Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACTN2	0	genome.wustl.edu	37	1	236908040	236908040	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	1	236908040	236908040	G	A	SNP	ACTN2	NM_001103.2	human	genbank	58_37c	+1	reviewed	missense	c.1370	p.R457H	1.000	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMSmart_SM00054,HMMPfam_efhand_Ca_insen,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,HMMPfam_efhand,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431.1	human	genbank	58_37c	-1	reviewed	missense	c.49	p.E17K	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like	-	no_errors
ALG12	0	genome.wustl.edu	37	22	50304162	50304162	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	22	50304162	50304162	A	T	SNP	ALG12	NM_024105.3	human	genbank	58_37c	-1	reviewed	missense	c.389	p.F130Y	1.000	HMMPfam_Glyco_transf_22	HMMPfam_Glyco_transf_22	-	no_errors
ANKRD20A2	0	genome.wustl.edu	37	9	42368614	42368614	+	Missense_Mutation	SNP	A	A	G	rs71238561	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	9	42368614	42368614	A	G	SNP	ANKRD20A2	NM_001012421.1	human	genbank	58_37c	+1	validated	missense	c.200	p.H67R	0.207	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
COLQ	0	genome.wustl.edu	37	3	15531117	15531117	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	3	15531117	15531117	C	T	SNP	COLQ	NM_005677.3	human	genbank	58_37c	-1	reviewed	missense	c.134	p.R45H	0.961	NULL	HMMPfam_Collagen	-	no_errors
DSG3	0	genome.wustl.edu	37	18	29055684	29055684	+	Missense_Mutation	SNP	G	G	T	rs148716637	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	18	29055684	29055684	G	T	SNP	DSG3	NM_001944.2	human	genbank	58_37c	+1	reviewed	missense	c.2461	p.A821S	0.000	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
ELN	0	genome.wustl.edu	37	7	73471003	73471003	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	7	73471003	73471003	C	T	SNP	ELN	NM_000501.2	human	genbank	58_37c	+1	reviewed	silent	c.1317	p.P439	0.070	NULL	PatternScan_ENDONUCLEASE_III_2,PatternScan_HEXAPEP_TRANSFERASES	-	no_errors
ENSG00000201990	0	genome.wustl.edu	37	7	6043965	6043966	+	RNA	DEL	TG	TG	-	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	7	6043965	6043966	TG	-	DEL	ENSG00000201990	ENST00000365120	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.544:0.504	-	-	-	no_errors
ENSG00000245434	0	genome.wustl.edu	37	17	62075994	62075995	+	RNA	INS	-	-	A	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	17	62075994	62075995	-	A	INS	ENSG00000245434	ENST00000501158	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.000:0.003	-	-	-	no_errors
ENSG00000247397	0	genome.wustl.edu	37	8	12395939	12395939	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	8	12395939	12395939	C	T	SNP	ENSG00000247397	ENST00000500162	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.037	-	-	-	no_errors
FBXO11	0	genome.wustl.edu	37	2	48049368	48049368	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	2	48049368	48049368	T	C	SNP	FBXO11	NM_025133.3	human	genbank	58_37c	-1	reviewed	missense	c.1439	p.N480S	1.000	HMMSmart_PbH1,superfamily_Pectin_lyas_like,superfamily_SSF81383	HMMPfam_F-box,HMMSmart_FBOX,HMMPfam_zf-UBR,HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like,superfamily_SSF81383	-	no_errors
FLG	0	genome.wustl.edu	37	1	152285536	152285536	+	Nonsense_Mutation	SNP	G	G	T	rs145119819	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	1	152285536	152285536	G	T	SNP	FLG	NM_002016.1	human	genbank	58_37c	-1	reviewed	nonsense	c.1826	p.S609*	0.002	HMMPfam_Filaggrin	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
FLJ39632	0	genome.wustl.edu	37	14	19887196	19887197	+	RNA	DEL	TT	TT	-	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	14	19887196	19887197	TT	-	DEL	FLJ39632	XR_015133.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.006:0.006	-	-	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29625924	29625925	+	In_Frame_Ins	INS	-	-	CTT	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	20	29625924	29625925	-	CTT	INS	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	in_frame_ins	c.168_169	p.57in_frame_insL	0.996:0.999	superfamily_Actin_crosslink,HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
HUWE1	0	genome.wustl.edu	37	X	53561598	53561598	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	X	53561598	53561598	C	T	SNP	HUWE1	NM_031407.4	human	genbank	58_37c	-1	reviewed	missense	c.12710	p.R4237H	1.000	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	HMMPfam_UBA,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WWE,superfamily_UBA-like,HMMPfam_DUF908,HMMPfam_DUF913,HMMSmart_SM00165,superfamily_ARM repeat	-	no_errors
JTB	0	genome.wustl.edu	37	1	153949695	153949705	+	Frame_Shift_Del	DEL	GGGGGAGGCCA	GGGGGAGGCCA	-	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	GGGGGAGGCCA	GGGGGAGGCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	1	153949695	153949705	GGGGGAGGCCA	-	DEL	JTB	NM_006694.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.34_24	p.L10fs	0.309:0.309:0.620:0.899:0.971:0.989:1.000:1.000:1.000:0.984:0.968	NULL	HMMPfam_JTB	-	no_errors
JTB	0	genome.wustl.edu	37	1	153949711	153949712	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	1	153949711	153949712	CC	-	DEL	JTB	NM_006694.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.18_17	p.G6fs	0.997:0.986	NULL	HMMPfam_JTB	-	no_errors
KIF17	0	genome.wustl.edu	37	1	21011622	21011623	+	Splice_Site	INS	-	-	GACA	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	1	21011622	21011623	-	GACA	INS	KIF17	ENST00000321188	human	ensembl	58_37c	-1	known	splice_site_ins	c.54+1_54+1	e1+1	0.000:0.000	-	-	-	no_start_codon
KRTAP5-5	0	genome.wustl.edu	37	11	1651094	1651094	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	11	1651094	1651094	A	G	SNP	KRTAP5-5	NM_001001480.2	human	genbank	58_37c	+1	validated	silent	c.24	p.G8	0.920	NULL	PatternScan_2FE2S_FER_1,PatternScan_MOLYBDOPTERIN_PROK_1	-	no_errors
LAG3	0	genome.wustl.edu	37	12	6882468	6882468	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	12	6882468	6882468	C	T	SNP	LAG3	NM_002286.5	human	genbank	58_37c	+1	reviewed	nonsense	c.169	p.R57*	0.003	HMMSmart_IG	HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
LOC100289323	0	genome.wustl.edu	37	14	36417444	36417444	+	Silent	SNP	C	C	T	rs143795907	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	14	36417444	36417444	C	T	SNP	LOC100289323	XM_002343272.1	human	genbank	58_37c	+1	model	silent	c.162	p.D54	0.000	NULL	NULL	-	no_errors
LOC100289323	0	genome.wustl.edu	37	14	36417446	36417446	+	Missense_Mutation	SNP	C	C	T	rs146503940	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	14	36417446	36417446	C	T	SNP	LOC100289323	XM_002343272.1	human	genbank	58_37c	+1	model	missense	c.164	p.T55M	0.001	NULL	NULL	-	no_errors
LRRC37A3	0	genome.wustl.edu	37	17	62892159	62892159	+	Missense_Mutation	SNP	G	G	T	rs17857225	byCluster	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	17	62892159	62892159	G	T	SNP	LRRC37A3	NM_199340.2	human	genbank	58_37c	-1	provisional	missense	c.1217	p.A406D	0.000	NULL	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
MACF1	0	genome.wustl.edu	37	1	39775287	39775287	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	1	39775287	39775287	G	A	SNP	MACF1	ENST00000372900	human	ensembl	58_37c	+1	known	missense	c.3181	p.A1061T	0.645	NULL	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
MLL3	0	genome.wustl.edu	37	7	152012425	152012425	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	7	152012425	152012425	T	G	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	splice_site	c.390-2	e4-2	1.000	-	-	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100612955	100612956	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	7	100612955	100612956	-	CTG	INS	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	in_frame_ins	c.52_53	p.19in_frame_insA	0.000:0.000	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
NETO1	0	genome.wustl.edu	37	18	70526127	70526127	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	18	70526127	70526127	T	C	SNP	NETO1	NM_138966.2	human	genbank	58_37c	-1	reviewed	missense	c.403	p.I135V	1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module	-	no_errors
NOS3	0	genome.wustl.edu	37	7	150698507	150698507	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	7	150698507	150698507	C	T	SNP	NOS3	NM_000603.4	human	genbank	58_37c	+1	reviewed	silent	c.1422	p.R474	1.000	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain	HMMPfam_NAD_binding_1,HMMPfam_FAD_binding_1,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,superfamily_Flavoproteins,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
NSD1	0	genome.wustl.edu	37	5	176637903	176637903	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	5	176637903	176637903	G	T	SNP	NSD1	NM_022455.4	human	genbank	58_37c	+1	reviewed	missense	c.2503	p.G835C	0.993	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00249,HMMSmart_SM00508,HMMSmart_SM00570,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT,superfamily_SET domain	-	no_errors
NUMA1	0	genome.wustl.edu	37	11	71726685	71726685	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	11	71726685	71726685	G	A	SNP	NUMA1	NM_006185.2	human	genbank	58_37c	-1	validated	nonsense	c.1864	p.Q622*	1.000	NULL	superfamily_Prefoldin	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLCE1	0	genome.wustl.edu	37	10	96018782	96018782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	10	96018782	96018782	G	A	SNP	PLCE1	NM_016341.3	human	genbank	58_37c	+1	reviewed	missense	c.3689	p.R1230H	1.000	superfamily_EF-hand	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RA,HMMSmart_SM00314,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand	-	no_errors
PTGDR	0	genome.wustl.edu	37	14	52735144	52735144	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	14	52735144	52735144	C	T	SNP	PTGDR	NM_000953.2	human	genbank	58_37c	+1	reviewed	silent	c.612	p.S204	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
R3HDML	0	genome.wustl.edu	37	20	42965927	42965927	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	20	42965927	42965927	C	T	SNP	R3HDML	NM_178491.2	human	genbank	58_37c	+1	provisional	silent	c.130	p.L44	0.000	superfamily_SCP-like_extracellular	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular,PatternScan_CRISP_1,PatternScan_CRISP_2	-	no_errors
SCN3A	0	genome.wustl.edu	37	2	165947251	165947251	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	2	165947251	165947251	C	T	SNP	SCN3A	NM_006922.3	human	genbank	58_37c	-1	reviewed	silent	c.5412	p.A1804	0.046	NULL	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_SSF81324	-	no_errors
SRP68	0	genome.wustl.edu	37	17	74041393	74041393	+	Silent	SNP	A	A	T	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	17	74041393	74041393	A	T	SNP	SRP68	NM_014230.2	human	genbank	58_37c	-1	reviewed	silent	c.1374	p.T458	0.106	NULL	superfamily_TPR-like	-	no_errors
UBA1	0	genome.wustl.edu	37	X	47073947	47073947	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	X	47073947	47073947	A	G	SNP	UBA1	NM_003334.3	human	genbank	58_37c	+1	reviewed	silent	c.2952	p.K984	1.000	HMMPfam_UBA_e1_C	HMMPfam_UBACT,HMMPfam_ThiF,superfamily_MoeB,PatternScan_UBIQUITIN_ACTIVAT_1,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBA_e1_C,HMMPfam_UBA_e1_thiolCys	-	no_errors
