Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACOT11	26027	genome.wustl.edu	37	1	55059698	55059698	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	55059698	55059698	C	G	SNP	ACOT11	NM_015547.2	human	genbank	58_37c	+1	reviewed	missense	c.457	p.R153G	1.000	superfamily_Thioesterase/thiol ester dehydrase-isomerase	HMMPfam_START,HMMSmart_SM00234,HMMPfam_4HBT,superfamily_Thioesterase/thiol ester dehydrase-isomerase,superfamily_Bet v1-like	-	no_errors
ACVR1C	130399	genome.wustl.edu	37	2	158406760	158406760	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	2	158406760	158406760	C	A	SNP	ACVR1C	NM_145259.2	human	genbank	58_37c	-1	validated	missense	c.689	p.R230I	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_Activin_recp,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Snake toxin-like	-	no_errors
AHCTF1	25909	genome.wustl.edu	37	1	247014111	247014111	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	247014111	247014111	C	A	SNP	AHCTF1	NM_015446.4	human	genbank	58_37c	-1	validated	missense	c.5197	p.D1733Y	0.030	NULL	PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
BCAS1	8537	genome.wustl.edu	37	20	52570137	52570137	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	20	52570137	52570137	G	T	SNP	BCAS1	NM_003657.2	human	genbank	58_37c	-1	reviewed	nonsense	c.1514	p.S505*	0.006	NULL	NULL	-	no_errors
BCAT1	586	genome.wustl.edu	37	12	24970952	24970952	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	12	24970952	24970952	A	G	SNP	BCAT1	NM_005504.6	human	genbank	58_37c	-1	reviewed	missense	c.1151	p.V384A	0.000	superfamily_Aminotrans_IV	HMMPfam_Aminotran_4,superfamily_Aminotrans_IV,PatternScan_AA_TRANSFER_CLASS_4	-	no_errors
BRAF	673	genome.wustl.edu	37	7	140476796	140476796	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	7	140476796	140476796	A	G	SNP	BRAF	NM_004333.4	human	genbank	58_37c	-1	reviewed	missense	c.1610	p.L537S	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,HMMPfam_RBD,HMMSmart_SM00455,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Ubiquitin-like,superfamily_Cysteine-rich domain	-	no_errors
C10orf47	254427	genome.wustl.edu	37	10	11908656	11908660	+	Frame_Shift_Del	DEL	CTCTG	CTCTG	-	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	CTCTG	CTCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	10	11908656	11908660	CTCTG	-	DEL	C10orf47	NM_153256.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.265_269	p.C90fs	1.000:1.000:0.996:0.996:0.960	NULL	NULL	-	no_errors
CACNA1B	774	genome.wustl.edu	37	9	140938304	140938304	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	9	140938304	140938304	G	A	SNP	CACNA1B	NM_000718.2	human	genbank	58_37c	+1	validated	missense	c.3365	p.R1122Q	0.998	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CACNA1F	778	genome.wustl.edu	37	X	49065116	49065116	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	X	49065116	49065116	C	T	SNP	CACNA1F	NM_005183.2	human	genbank	58_37c	-1	reviewed	missense	c.5015	p.R1672H	0.416	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CHRNB2	1141	genome.wustl.edu	37	1	154543672	154543672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	154543672	154543672	G	A	SNP	CHRNB2	NM_000748.2	human	genbank	58_37c	+1	reviewed	missense	c.373	p.G125S	1.000	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
CLUL1	27098	genome.wustl.edu	37	18	618062	618062	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	18	618062	618062	C	T	SNP	CLUL1	NM_014410.4	human	genbank	58_37c	+1	validated	missense	c.62	p.A21V	0.996	HMMPfam_Clusterin	HMMPfam_Clusterin,HMMSmart_CLb,HMMSmart_CLa	-	no_errors
COPG	22820	genome.wustl.edu	37	3	128996136	128996136	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	3	128996136	128996136	G	C	SNP	COPG	NM_016128.3	human	genbank	58_37c	+1	validated	splice_site	c.2495-1	e24-1	1.000	-	-	-	no_errors
CPS1	1373	genome.wustl.edu	37	2	211471611	211471611	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	2	211471611	211471611	T	G	SNP	CPS1	NM_001122633.1	human	genbank	58_37c	+1	reviewed	missense	c.2156	p.I719S	1.000	HMMPfam_CPSase_L_D2,PatternScan_CPSASE_2,superfamily_Glutathione synthetase ATP-binding domain-like	HMMPfam_GATase,HMMPfam_CPSase_sm_chain,superfamily_Carbamoyl phosphate synthetase small subunit N-terminal domain,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,HMMPfam_CPSase_L_D3,superfamily_Carbamoyl phosphate synthetase large subunit connection domain,HMMPfam_CPSase_L_chain,HMMPfam_MGS,superfamily_PreATP-grasp domain,superfamily_Class I glutamine amidotransferase-like,superfamily_Methylglyoxal synthase-like,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
DNAH3	55567	genome.wustl.edu	37	16	20955961	20955961	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	16	20955961	20955961	G	T	SNP	DNAH3	NM_017539.1	human	genbank	58_37c	-1	provisional	missense	c.11368	p.L3790I	0.648	HMMPfam_Dynein_heavy	HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAH9	1770	genome.wustl.edu	37	17	11522985	11522985	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	17	11522985	11522985	G	T	SNP	DNAH9	NM_001372.3	human	genbank	58_37c	+1	reviewed	nonsense	c.1237	p.E413*	1.000	HMMPfam_DHC_N1	HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000221734	0	genome.wustl.edu	37	9	117554504	117554505	+	RNA	INS	-	-	AC	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	9	117554504	117554505	-	AC	INS	ENSG00000221734	ENST00000408807	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.007:0.007	-	-	-	no_errors
ENSG00000245415	0	genome.wustl.edu	37	19	51301334	51301334	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	19	51301334	51301334	G	A	SNP	C19orf48	NM_199249.1	human	genbank	58_37c	-1	validated	3_prime_untranslated_region	c.*18	NULL	0.000	-	-	-	no_errors
ERBB4	2066	genome.wustl.edu	37	2	212543900	212543900	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	2	212543900	212543900	C	T	SNP	ERBB4	NM_005235.2	human	genbank	58_37c	-1	reviewed	missense	c.1499	p.G500E	1.000	HMMSmart_SM00261,superfamily_L domain-like	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_YLP,HMMPfam_Furin-like,HMMSmart_SM00261,PatternScan_PROTEIN_KINASE_TYR,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_L domain-like	-	no_errors
EYS	346007	genome.wustl.edu	37	6	65301142	65301142	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	6	65301142	65301142	T	G	SNP	EYS	NM_001142800.1	human	genbank	58_37c	-1	reviewed	missense	c.4618	p.N1540H	1.000	superfamily_Concanavalin A-like lectins/glucanases	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
HAVCR1	26762	genome.wustl.edu	37	5	156464344	156464344	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	5	156464344	156464344	G	A	SNP	HAVCR1	NM_001099414.1	human	genbank	58_37c	-1	reviewed	missense	c.866	p.T289M	0.000	NULL	PatternScan_IG_MHC,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
ITGA1	3672	genome.wustl.edu	37	5	52216261	52216261	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	5	52216261	52216261	G	A	SNP	ITGA1	NM_181501.1	human	genbank	58_37c	+1	reviewed	missense	c.2255	p.R752Q	0.265	HMMPfam_Integrin_alpha2,superfamily_SSF69179	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF53300,superfamily_SSF69179,superfamily_SSF69318	-	no_errors
KDM3A	55818	genome.wustl.edu	37	2	86705821	86705821	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	2	86705821	86705821	T	G	SNP	KDM3A	NM_018433.5	human	genbank	58_37c	+1	reviewed	missense	c.2279	p.L760R	1.000	NULL	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like	-	no_errors
LCE6A	0	genome.wustl.edu	37	1	152816068	152816068	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	152816068	152816068	C	T	SNP	LCE6A	NM_001128600.1	human	genbank	58_37c	+1	validated	silent	c.72	p.N24	0.000	NULL	NULL	-	no_errors
LIG1	3978	genome.wustl.edu	37	19	48620916	48620916	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	19	48620916	48620916	G	C	SNP	LIG1	NM_000234.1	human	genbank	58_37c	-1	reviewed	missense	c.2562	p.I854M	1.000	NULL	HMMPfam_DNA_ligase_A_N,HMMPfam_DNA_ligase_A_C,HMMPfam_DNA_ligase_A_M,PatternScan_DNA_LIGASE_A2,PatternScan_DNA_LIGASE_A1,superfamily_DNA ligase/mRNA capping enzyme catalytic domain	-	no_errors
LOC100131669	0	genome.wustl.edu	37	18	42643576	42643576	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	18	42643576	42643576	C	G	SNP	LOC100131669	XM_001715120.1	human	genbank	58_37c	-1	model	missense	c.158	p.G53A	0.950	NULL	NULL	-	no_errors
LOC100288017	0	genome.wustl.edu	37	21	14568634	14568634	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	21	14568634	14568634	G	A	SNP	LOC100288017	XM_002343737.1	human	genbank	58_37c	+1	model	silent	c.267	p.A89	0.024	NULL	NULL	-	no_errors
LOC100288554	0	genome.wustl.edu	37	4	9423986	9423986	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	4	9423986	9423986	C	T	SNP	LOC100288554	XM_002342446.1	human	genbank	58_37c	+1	model	missense	c.95	p.P32L	0.208	NULL	HMMPfam_Defensin_beta,superfamily_Defensin-like	-	no_errors
MIR154	0	genome.wustl.edu	37	14	101526096	101526096	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	14	101526096	101526096	T	C	SNP	MIR154	ENST00000385243	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.053	-	-	-	no_errors
MORF4L2	9643	genome.wustl.edu	37	X	102931122	102931122	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	X	102931122	102931122	C	A	SNP	MORF4L2	NM_001142418.1	human	genbank	58_37c	-1	validated	silent	c.834	p.V278	1.000	NULL	HMMPfam_MRG	-	no_errors
NCCRP1	342897	genome.wustl.edu	37	19	39690990	39690990	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	19	39690990	39690990	G	T	SNP	NCCRP1	NM_001001414.1	human	genbank	58_37c	+1	provisional	nonsense	c.553	p.E185*	0.988	HMMPfam_FBA,superfamily_Gal_bind_like	HMMPfam_FBA,superfamily_Gal_bind_like	-	no_errors
OR6Y1	391112	genome.wustl.edu	37	1	158517488	158517488	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	158517488	158517488	G	C	SNP	OR6Y1	NM_001005189.1	human	genbank	58_37c	-1	provisional	silent	c.408	p.R136	0.379	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCDH15	65217	genome.wustl.edu	37	10	55944938	55944938	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	10	55944938	55944938	G	A	SNP	PCDH15	NM_001142763.1	human	genbank	58_37c	-1	reviewed	missense	c.1411	p.L471F	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
PPP1R10	5514	genome.wustl.edu	37	6	30571347	30571347	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	6	30571347	30571347	C	T	SNP	PPP1R10	NM_002714.2	human	genbank	58_37c	-1	reviewed	missense	c.1669	p.V557I	0.999	NULL	HMMPfam_zf-CCCH,HMMSmart_SM00356,HMMSmart_SM00509	-	no_errors
PSMC4	5704	genome.wustl.edu	37	19	40480708	40480708	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	19	40480708	40480708	G	A	SNP	PSMC4	NM_006503.2	human	genbank	58_37c	+1	reviewed	missense	c.646	p.A216T	1.000	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RB1CC1	9821	genome.wustl.edu	37	8	53569190	53569190	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	8	53569190	53569190	T	A	SNP	RB1CC1	NM_014781.4	human	genbank	58_37c	-1	reviewed	nonsense	c.3199	p.K1067*	1.000	NULL	HMMPfam_ATG11,superfamily_SSF54236	-	no_errors
RWDD2A	112611	genome.wustl.edu	37	6	83905471	83905471	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	6	83905471	83905471	T	A	SNP	RWDD2A	NM_033411.3	human	genbank	58_37c	+1	validated	missense	c.359	p.V120E	0.812	HMMPfam_RWD,HMMSmart_RWD,superfamily_UBQ-conjugat/RWD-like	HMMPfam_RWD,HMMSmart_RWD,HMMPfam_DUF1115,superfamily_UBQ-conjugat/RWD-like	-	no_errors
SCPEP1	59342	genome.wustl.edu	37	17	55058560	55058560	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	17	55058560	55058560	T	A	SNP	SCPEP1	NM_021626.2	human	genbank	58_37c	+1	validated	missense	c.194	p.F65Y	1.000	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases	HMMPfam_Peptidase_S10,PatternScan_CARBOXYPEPT_SER_SER,superfamily_alpha/beta-Hydrolases	-	no_errors
SFMBT2	57713	genome.wustl.edu	37	10	7244480	7244480	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	10	7244480	7244480	T	G	SNP	SFMBT2	NM_001029880.1	human	genbank	58_37c	-1	provisional	missense	c.1449	p.Q483H	1.000	superfamily_Tudor/PWWP/MBT	HMMSmart_SM00454,HMMPfam_MBT,HMMSmart_SM00561,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_Tudor/PWWP/MBT	-	no_errors
SLC35D1	23169	genome.wustl.edu	37	1	67507959	67507959	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	67507959	67507959	G	C	SNP	SLC35D1	NM_015139.2	human	genbank	58_37c	-1	reviewed	missense	c.689	p.P230R	1.000	NULL	HMMPfam_TPT	-	no_errors
SLC44A5	204962	genome.wustl.edu	37	1	75708648	75708648	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	75708648	75708648	G	C	SNP	SLC44A5	NM_152697.4	human	genbank	58_37c	-1	validated	missense	c.394	p.Q132E	1.000	NULL	HMMPfam_DUF580	-	no_errors
SPEG	10290	genome.wustl.edu	37	2	220354392	220354392	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	2	220354392	220354392	A	C	SNP	SPEG	NM_005876.4	human	genbank	58_37c	+1	validated	silent	c.8652	p.P2884	0.971	NULL	HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Immunoglobulin	-	no_errors
SULT1E1	6783	genome.wustl.edu	37	4	70715248	70715248	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	4	70715248	70715248	C	T	SNP	SULT1E1	NM_005420.2	human	genbank	58_37c	-1	reviewed	missense	c.403	p.A135T	0.994	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TMCO4	255104	genome.wustl.edu	37	1	20009551	20009551	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	20009551	20009551	G	A	SNP	TMCO4	NM_181719.4	human	genbank	58_37c	-1	validated	silent	c.1887	p.P629	0.912	NULL	HMMPfam_DUF726	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578402	7578402	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	17	7578402	7578402	G	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.528	p.C176*	0.998	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
USH2A	7399	genome.wustl.edu	37	1	215953312	215953312	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	215953312	215953312	C	T	SNP	USH2A	NM_206933.2	human	genbank	58_37c	-1	reviewed	silent	c.10812	p.V3604	0.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
USP33	23032	genome.wustl.edu	37	1	78194177	78194177	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	78194177	78194177	T	A	SNP	USP33	NM_015017.3	human	genbank	58_37c	-1	validated	missense	c.1031	p.N344I	0.999	HMMPfam_UCH,superfamily_Cysteine proteinases	HMMPfam_UCH,HMMPfam_zf-UBP,HMMSmart_SM00290,HMMSmart_SM00695,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
ZEB1	6935	genome.wustl.edu	37	10	31810768	31810768	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	10	31810768	31810768	G	A	SNP	ZEB1	NM_030751.5	human	genbank	58_37c	+1	reviewed	silent	c.2505	p.T835	0.878	NULL	HMMSmart_HOX,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1,superfamily_SSF57667	-	no_errors
ZNF217	7764	genome.wustl.edu	37	20	52192498	52192498	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	20	52192498	52192498	A	G	SNP	ZNF217	NM_006526.2	human	genbank	58_37c	-1	validated	silent	c.2805	p.N935	0.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF365	22891	genome.wustl.edu	37	10	64425930	64425930	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	10	64425930	64425930	T	C	SNP	ZNF365	NM_199451.2	human	genbank	58_37c	+1	reviewed	missense	c.1262	p.L421P	0.000	NULL	HMMSmart_ZnF_C2H2	-	no_errors
