Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AHCTF1	0	genome.wustl.edu	37	1	247016578	247016578	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	1	247016578	247016578	C	T	SNP	AHCTF1	NM_015446.4	human	genbank	58_37c	-1	validated	missense	c.4378	p.G1460S	0.102	NULL	PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
APBA1	0	genome.wustl.edu	37	9	72073092	72073092	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	9	72073092	72073092	A	C	SNP	APBA1	NM_001163.3	human	genbank	58_37c	-1	reviewed	missense	c.1495	p.L499V	1.000	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729	-	no_errors
C7orf63	0	genome.wustl.edu	37	7	89938682	89938683	+	Splice_Site	INS	-	-	T	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	7	89938682	89938683	-	T	INS	C7orf63	NM_001039706.2	human	genbank	58_37c	+1	validated	splice_site_ins	c.2517+1_2517+1	e21+1	1.000:1.000	-	-	-	no_errors
COQ5	0	genome.wustl.edu	37	12	120966842	120966842	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	12	120966842	120966842	C	A	SNP	COQ5	NM_032314.3	human	genbank	58_37c	-1	validated	missense	c.103	p.G35W	0.000	NULL	HMMPfam_Ubie_methyltran,PatternScan_UBIE_1,PatternScan_UBIE_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
CYSLTR2	0	genome.wustl.edu	37	13	49281768	49281768	+	Missense_Mutation	SNP	C	C	T	rs148425155	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	13	49281768	49281768	C	T	SNP	CYSLTR2	NM_020377.2	human	genbank	58_37c	+1	reviewed	missense	c.815	p.T272M	0.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
ENSG00000198804	0	genome.wustl.edu	37	MT	5949	5949	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	MT	5949	5949	G	A	SNP	ENSG00000198804	ENST00000361624	human	ensembl	58_37c	+1	known	nonsense	c.46	p.G16*	NULL	HMMPfam_COX1,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	mismatch_between_exon_seq_and_reference
ENSG00000209082	0	genome.wustl.edu	37	MT	3242	3242	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	MT	3242	3242	G	A	SNP	ENSG00000209082	ENST00000386347	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
FAM120A	0	genome.wustl.edu	37	9	96238607	96238607	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	9	96238607	96238607	T	C	SNP	FAM120A	NM_014612.3	human	genbank	58_37c	+1	validated	missense	c.791	p.L264P	1.000	NULL	superfamily_PIN domain-like	-	no_errors
HS6ST1	0	genome.wustl.edu	37	2	129075877	129075877	+	Missense_Mutation	SNP	G	G	T	rs61738292	byFrequency	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	2	129075877	129075877	G	T	SNP	HS6ST1	NM_004807.2	human	genbank	58_37c	-1	reviewed	missense	c.261	p.D87E	1.000	HMMPfam_HS6ST	HMMPfam_HS6ST	-	no_errors
KCNA4	0	genome.wustl.edu	37	11	30033418	30033418	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	11	30033418	30033418	G	A	SNP	KCNA4	NM_002233.2	human	genbank	58_37c	-1	reviewed	missense	c.808	p.R270W	1.000	HMMSmart_SM00225,superfamily_POZ domain	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,HMMPfam_K_channel_TID,superfamily_Voltage-gated potassium channels	-	no_errors
KLHL31	0	genome.wustl.edu	37	6	53519409	53519409	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	6	53519409	53519409	A	C	SNP	KLHL31	NM_001003760.4	human	genbank	58_37c	-1	validated	missense	c.662	p.I221R	0.954	HMMPfam_BACK	HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_Kelch_2,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
KRAS	0	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	byCluster	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	12	25398284	25398284	C	T	SNP	KRAS	NM_033360.2	human	genbank	58_37c	-1	reviewed	missense	c.35	p.G12D	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC441666	0	genome.wustl.edu	37	10	42833133	42833135	+	RNA	DEL	ATT	ATT	-	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	ATT	ATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	10	42833133	42833135	ATT	-	DEL	LOC441666	NR_024380.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.966:0.250:0.047	-	-	-	pseudogene
NCOR2	0	genome.wustl.edu	37	12	124824739	124824740	+	Frame_Shift_Ins	INS	-	-	GCCG	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	12	124824739	124824740	-	GCCG	INS	NCOR2	NM_006312.3	human	genbank	58_37c	-1	validated	frame_shift_ins	c.5521_5520	p.S1840fs	1.000:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLA2G1B	0	genome.wustl.edu	37	12	120763747	120763747	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	12	120763747	120763747	C	A	SNP	PLA2G1B	NM_000928.2	human	genbank	58_37c	-1	validated	silent	c.111	p.G37	0.028	HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,superfamily_PhospholipaseA2	HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,PatternScan_PA2_HIS,PatternScan_PA2_ASP,superfamily_PhospholipaseA2	-	no_errors
PPP1R12B	0	genome.wustl.edu	37	1	202411672	202411672	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	1	202411672	202411672	T	C	SNP	PPP1R12B	NM_032105.2	human	genbank	58_37c	+1	reviewed	missense	c.1639	p.S547P	0.996	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
SLC41A3	0	genome.wustl.edu	37	3	125769871	125769871	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	3	125769871	125769871	A	G	SNP	SLC41A3	NM_001008485.1	human	genbank	58_37c	-1	validated	missense	c.296	p.V99A	0.805	NULL	HMMPfam_MgtE,PatternScan_PEROXIDASE_2	-	no_errors
STAB2	0	genome.wustl.edu	37	12	104100710	104100710	+	Silent	SNP	C	C	T	rs148549353	byFrequency	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	12	104100710	104100710	C	T	SNP	STAB2	NM_017564.9	human	genbank	58_37c	+1	reviewed	silent	c.4137	p.S1379	0.000	HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2	HMMPfam_Xlink,HMMSmart_LINK,PatternScan_LINK_1,HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1,HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_EGF_alliinase,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_C-type_lectin_fold,superfamily_SSF57196	-	no_errors
TBX3	0	genome.wustl.edu	37	12	115120669	115120669	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	12	115120669	115120669	A	G	SNP	TBX3	NM_016569.3	human	genbank	58_37c	-1	reviewed	missense	c.337	p.W113R	1.000	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_1	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
ZNF747	0	genome.wustl.edu	37	16	30545573	30545573	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	16	30545573	30545573	C	T	SNP	ZNF747	NM_023931.2	human	genbank	58_37c	-1	provisional	missense	c.428	p.G143E	0.967	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	-	no_errors
