Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACTG1	0	genome.wustl.edu	37	17	79478402	79478402	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	17	79478402	79478402	T	C	SNP	ACTG1	NM_001614.2	human	genbank	58_37c	-1	reviewed	missense	c.614	p.E205G	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_1,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	-	no_errors
ANK1	0	genome.wustl.edu	37	8	41526060	41526060	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	8	41526060	41526060	C	A	SNP	ANK1	NM_001142446.1	human	genbank	58_37c	-1	reviewed	missense	c.5242	p.G1748C	0.953	NULL	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMSmart_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like	-	no_errors
ANKS6	0	genome.wustl.edu	37	9	101530484	101530484	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	9	101530484	101530484	T	A	SNP	ANKS6	NM_173551.3	human	genbank	58_37c	-1	provisional	missense	c.2021	p.K674I	0.934	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain	-	no_errors
APOOL	0	genome.wustl.edu	37	X	84329041	84329041	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	X	84329041	84329041	T	A	SNP	APOOL	NM_198450.4	human	genbank	58_37c	+1	validated	missense	c.524	p.I175N	0.967	HMMPfam_ApoO	HMMPfam_ApoO	-	no_errors
ARHGAP20	0	genome.wustl.edu	37	11	110451644	110451644	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	110451644	110451644	C	T	SNP	ARHGAP20	NM_020809.2	human	genbank	58_37c	-1	validated	missense	c.2026	p.A676T	0.000	NULL	HMMPfam_RA,HMMPfam_RhoGAP,HMMSmart_SM00324,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like	-	no_errors
ARHGAP31	0	genome.wustl.edu	37	3	119128524	119128524	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	3	119128524	119128524	G	C	SNP	ARHGAP31	NM_020754.2	human	genbank	58_37c	+1	reviewed	missense	c.1827	p.E609D	0.995	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	-	no_errors
ARHGEF10L	0	genome.wustl.edu	37	1	17991021	17991021	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	1	17991021	17991021	G	A	SNP	ARHGEF10L	NM_018125.3	human	genbank	58_37c	+1	validated	silent	c.2940	p.L980	1.000	superfamily_WD40 repeat-like	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),superfamily_WD40 repeat-like,superfamily_PH domain-like	-	no_errors
ASPM	0	genome.wustl.edu	37	1	197102711	197102711	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	1	197102711	197102711	G	T	SNP	ASPM	NM_018136.4	human	genbank	58_37c	-1	reviewed	missense	c.2188	p.L730I	0.926	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
BCMO1	0	genome.wustl.edu	37	16	81301669	81301669	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	16	81301669	81301669	A	T	SNP	BCMO1	NM_017429.2	human	genbank	58_37c	+1	reviewed	missense	c.776	p.K259M	1.000	HMMPfam_RPE65	HMMPfam_RPE65	-	no_errors
BPIL2	0	genome.wustl.edu	37	22	32853309	32853309	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	22	32853309	32853309	G	T	SNP	BPIL2	NM_174932.2	human	genbank	58_37c	-1	validated	missense	c.65	p.S22Y	0.011	NULL	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom,PatternScan_LBP_BPI_CETP	-	no_errors
BRD7P3	0	genome.wustl.edu	37	6	118823372	118823372	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	6	118823372	118823372	T	C	SNP	BRD7P3	NR_002730.2	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.850	-	-	-	pseudogene
C4BPA	0	genome.wustl.edu	37	1	207288791	207288791	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	1	207288791	207288791	G	A	SNP	C4BPA	NM_000715.3	human	genbank	58_37c	+1	reviewed	missense	c.359	p.R120H	0.008	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	-	no_errors
C4orf21	0	genome.wustl.edu	37	4	113544995	113544995	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	4	113544995	113544995	C	G	SNP	C4orf21	ENST00000505019	human	ensembl	58_37c	-1	known	missense	c.140	p.S47T	0.980	HMMPfam_DUF2439	HMMPfam_zf-GRF,HMMPfam_DUF2439,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
C7orf30	0	genome.wustl.edu	37	7	23349135	23349135	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	7	23349135	23349135	G	C	SNP	C7orf30	NM_138446.1	human	genbank	58_37c	+1	predicted	silent	c.678	p.V226	0.000	NULL	HMMPfam_DUF143	-	no_errors
CAPN1	0	genome.wustl.edu	37	11	64953645	64953645	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	64953645	64953645	A	C	SNP	CAPN1	NM_005186.2	human	genbank	58_37c	+1	reviewed	missense	c.595	p.N199H	1.000	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001	PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C2,HMMPfam_Calpain_III,HMMSmart_CysPc,HMMSmart_calpain_III,superfamily_Peptidase_C2,HMMSmart_EFh,PatternScan_EF_HAND_1,superfamily_SSF47473,superfamily_SSF54001	-	no_errors
CCDC87	0	genome.wustl.edu	37	11	66358801	66358801	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	66358801	66358801	C	G	SNP	CCDC87	NM_018219.2	human	genbank	58_37c	-1	validated	missense	c.1686	p.K562N	0.000	NULL	NULL	-	no_errors
CDADC1	0	genome.wustl.edu	37	13	49830003	49830003	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	13	49830003	49830003	T	C	SNP	CDADC1	NM_030911.2	human	genbank	58_37c	+1	validated	missense	c.206	p.L69S	0.846	NULL	HMMPfam_dCMP_cyt_deam_1,PatternScan_CYT_DCMP_DEAMINASES,superfamily_Cytidine deaminase-like	-	no_errors
CDHR2	0	genome.wustl.edu	37	5	176017599	176017599	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	5	176017599	176017599	A	T	SNP	CDHR2	NM_017675.4	human	genbank	58_37c	+1	reviewed	missense	c.3450	p.K1150N	0.000	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CIB4	0	genome.wustl.edu	37	2	26806664	26806664	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	2	26806664	26806664	G	T	SNP	CIB4	NM_001029881.1	human	genbank	58_37c	-1	provisional	missense	c.431	p.T144K	0.003	HMMSmart_EFh,superfamily_SSF47473	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
CMYA5	0	genome.wustl.edu	37	5	79041083	79041083	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	5	79041083	79041083	G	T	SNP	CMYA5	NM_153610.3	human	genbank	58_37c	+1	validated	missense	c.10773	p.Q3591H	1.000	NULL	HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors
CPXM2	0	genome.wustl.edu	37	10	125528165	125528167	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	10	125528165	125528167	CAG	-	DEL	CPXM2	NM_198148.2	human	genbank	58_37c	-1	validated	in_frame_del	c.1176_1174	p.L392in_frame_del	1.000:1.000:1.000	HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Carboxypeptidase regulatory domain,superfamily_Galactose-binding domain-like,superfamily_Zn-dependent exopeptidases	-	no_errors
CROCCL1	0	genome.wustl.edu	37	1	16945008	16945008	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	1	16945008	16945008	G	A	SNP	CROCCL1	NR_026752.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
CTU2	0	genome.wustl.edu	37	16	88780635	88780636	+	Frame_Shift_Ins	INS	-	-	GTGT	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	16	88780635	88780636	-	GTGT	INS	CTU2	NM_001012759.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1097_1098	p.T367fs	1.000:1.000	HMMPfam_DUF2392,superfamily_Adenine nucleotide alpha hydrolases-like	HMMPfam_DUF2392,superfamily_Adenine nucleotide alpha hydrolases-like	-	no_errors
DEM1	0	genome.wustl.edu	37	1	40980239	40980269	+	Frame_Shift_Del	DEL	AGACAGTGTCAGCAGAAGCCTCAGGGTTCTC	AGACAGTGTCAGCAGAAGCCTCAGGGTTCTC	-	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	AGACAGTGTCAGCAGAAGCCTCAGGGTTCTC	AGACAGTGTCAGCAGAAGCCTCAGGGTTCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	1	40980239	40980269	AGACAGTGTCAGCAGAAGCCTCAGGGTTCTC	-	DEL	DEM1	NM_022774.1	human	genbank	58_37c	+1	provisional	frame_shift_del	c.23_53	p.V10fs	0.955:0.757:0.245:0.032:0.000:0.002:0.000:0.017:0.822:0.990:0.995:1.000:1.000:1.000:1.000:1.000:0.992:0.998:0.996:0.921:0.966:0.966:0.893:0.990:0.993:0.979:0.999:1.000:1.000:1.000:1.000	NULL	HMMPfam_Morph_protein1	-	no_errors
DLG2	0	genome.wustl.edu	37	11	83344318	83344318	+	Missense_Mutation	SNP	T	T	C	rs143978460	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	83344318	83344318	T	C	SNP	DLG2	NM_001142699.1	human	genbank	58_37c	-1	reviewed	missense	c.1876	p.N626D	1.000	superfamily_SH3-domain,superfamily_PDZ domain-like	PatternScan_SERPIN,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,HMMPfam_L27_1,HMMPfam_PDZ_assoc,HMMPfam_Gua_kin_assoc_C,HMMPfam_MAGUK_N_PEST,PatternScan_GUANYLATE_KINASE_1,superfamily_L27 domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAH14	0	genome.wustl.edu	37	1	225306960	225306960	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	1	225306960	225306960	T	G	SNP	DNAH14	NM_001373.1	human	genbank	58_37c	+1	validated	missense	c.4130	p.V1377G	1.000	HMMPfam_DHC_N2	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_RVT_thumb,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNM1	0	genome.wustl.edu	37	9	131010957	131010957	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	9	131010957	131010957	C	A	SNP	DNM1	NM_004408.2	human	genbank	58_37c	+1	reviewed	missense	c.2001	p.D667E	1.000	HMMPfam_GED,HMMSmart_SM00302	HMMPfam_Dynamin_M,HMMPfam_Dynamin_N,HMMSmart_SM00053,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GED,HMMSmart_SM00302,PatternScan_DYNAMIN,superfamily_PH domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DSCAM	0	genome.wustl.edu	37	21	41725667	41725667	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	21	41725667	41725667	G	T	SNP	DSCAM	NM_001389.3	human	genbank	58_37c	-1	validated	missense	c.659	p.P220Q	1.000	superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
DST	0	genome.wustl.edu	37	6	56485202	56485202	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	6	56485202	56485202	A	C	SNP	DST	NM_001723.5	human	genbank	58_37c	-1	reviewed	silent	c.3630	p.A1210	0.000	NULL	HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF75399	-	no_errors
DYNC2H1	0	genome.wustl.edu	37	11	103074420	103074420	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	103074420	103074420	A	T	SNP	DYNC2H1	NM_001080463.1	human	genbank	58_37c	+1	reviewed	missense	c.8226	p.E2742D	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EFCAB3	0	genome.wustl.edu	37	17	60493497	60493497	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	17	60493497	60493497	T	C	SNP	EFCAB3	NM_001144933.1	human	genbank	58_37c	+1	validated	missense	c.1280	p.F427S	1.000	NULL	PatternScan_EF_HAND_1,superfamily_EF-hand	-	no_errors
ENSG00000198763	0	genome.wustl.edu	37	MT	4584	4584	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	MT	4584	4584	G	A	SNP	ENSG00000198763	ENST00000361453	human	ensembl	58_37c	+1	known	missense	c.115	p.A39T	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1,HMMPfam_NADH_dehy_S2_C	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
EPT1	0	genome.wustl.edu	37	2	26587719	26587719	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	2	26587719	26587719	C	T	SNP	EPT1	ENST00000407686	human	ensembl	58_37c	+1	known	missense	c.146	p.A49V	1.000	NULL	HMMPfam_CDP-OH_P_transf,PatternScan_CDP_ALCOHOL_P_TRANSF	-	no_errors
FAM182B	0	genome.wustl.edu	37	20	25754187	25754187	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	20	25754187	25754187	C	G	SNP	FAM182B	NR_026714.2	human	genbank	58_37c	-1	predicted	rna	NULL	NULL	0.003	-	-	-	no_errors
FCGBP	0	genome.wustl.edu	37	19	40357561	40357561	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	19	40357561	40357561	C	A	SNP	FCGBP	NM_003890.2	human	genbank	58_37c	-1	validated	missense	c.15752	p.G5251V	0.000	HMMPfam_VWD,HMMSmart_VWD	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors
FCGBP	0	genome.wustl.edu	37	19	40430361	40430361	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	19	40430361	40430361	C	T	SNP	FCGBP	NM_003890.2	human	genbank	58_37c	-1	validated	missense	c.1582	p.V528M	0.999	HMMPfam_VWD,HMMSmart_VWD	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29632643	29632643	+	Missense_Mutation	SNP	T	T	C	rs143379667	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	20	29632643	29632643	T	C	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	missense	c.458	p.L153P	1.000	HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29632662	29632662	+	Missense_Mutation	SNP	G	G	T	rs1803594	by2Hit2Allele	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	20	29632662	29632662	G	T	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	missense	c.477	p.E159D	0.647	HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
FUS	0	genome.wustl.edu	37	16	31195247	31195247	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	16	31195247	31195247	T	A	SNP	FUS	NM_004960.3	human	genbank	58_37c	+1	reviewed	missense	c.259	p.S87T	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_RNA-binding domain RBD,superfamily_Znf265 first zinc-finger domain	-	no_errors
GBAP	0	genome.wustl.edu	37	1	155187164	155187164	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	1	155187164	155187164	C	G	SNP	GBAP	ENST00000368374	human	ensembl	58_37c	-1	known	missense	c.89	p.G30A	1.000	HMMPfam_Glyco_hydro_30,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_30,superfamily_(Trans)glycosidases,superfamily_Glycosyl hydrolase domain	-	no_errors
GPC6	0	genome.wustl.edu	37	13	94197607	94197607	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	13	94197607	94197607	A	T	SNP	GPC6	NM_005708.3	human	genbank	58_37c	+1	reviewed	missense	c.252	p.E84D	1.000	HMMPfam_Glypican	HMMPfam_Glypican,PatternScan_GLYPICAN	-	no_errors
GPR110	0	genome.wustl.edu	37	6	46982477	46982477	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	6	46982477	46982477	G	A	SNP	GPR110	NM_153840.2	human	genbank	58_37c	-1	validated	silent	c.867	p.S289	0.086	NULL	HMMPfam_SEA,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,superfamily_SEA domain	-	no_errors
GUCY1B3	0	genome.wustl.edu	37	4	156723562	156723562	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	4	156723562	156723562	A	G	SNP	GUCY1B3	NM_000857.2	human	genbank	58_37c	+1	validated	missense	c.1244	p.K415R	1.000	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_HNOB,superfamily_H-NOX domain,HMMPfam_HNOBA,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
HCRTR2	0	genome.wustl.edu	37	6	55145230	55145230	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	6	55145230	55145230	A	T	SNP	HCRTR2	NM_001526.3	human	genbank	58_37c	+1	reviewed	missense	c.1093	p.N365Y	1.000	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,HMMPfam_Orexin_rec2,superfamily_SSF81321	-	no_errors
HSPA4	0	genome.wustl.edu	37	5	132439997	132440011	+	Splice_Site	DEL	AAAAATGCAGAGCAG	AAAAATGCAGAGCAG	-	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	AAAAATGCAGAGCAG	AAAAATGCAGAGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	5	132439997	132440011	AAAAATGCAGAGCAG	-	DEL	HSPA4	ENST00000321956	human	ensembl	58_37c	+1	known	splice_site_del	c.331-15_331-1	e6-1	0.987:0.965:0.914:0.217:0.074:0.034:0.044:0.046:0.037:0.997:1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors
LILRA6	0	genome.wustl.edu	37	19	54745621	54745621	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	19	54745621	54745621	G	A	SNP	LILRA6	NM_024318.2	human	genbank	58_37c	-1	validated	silent	c.489	p.L163	0.000	superfamily_SSF48726	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
LOC100287226	0	genome.wustl.edu	37	19	22497963	22497963	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	19	22497963	22497963	A	G	SNP	LOC100287226	XM_002343636.1	human	genbank	58_37c	+1	model	missense	c.1345	p.K449E	0.137	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC100287759	0	genome.wustl.edu	37	9	66454784	66454784	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	9	66454784	66454784	A	G	SNP	LOC100287759	XM_002342919.1	human	genbank	58_37c	-1	model	silent	c.171	p.P57	0.043	NULL	NULL	-	no_errors
LOC120364	0	genome.wustl.edu	37	11	110659328	110659328	+	Silent	SNP	A	G	G	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	110659328	110659328	A	G	SNP	LOC120364	XM_062025.5	human	genbank	58_37c	-1	model	silent	c.372	p.Y124	1.000	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
LOC646090	0	genome.wustl.edu	37	15	20482141	20482141	+	RNA	SNP	A	A	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	15	20482141	20482141	A	T	SNP	LOC646090	XR_017120.3	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
LOC653061	0	genome.wustl.edu	37	15	23602727	23602727	+	Silent	SNP	C	C	T	rs4293343	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	15	23602727	23602727	C	T	SNP	LOC653061	XM_002343324.1	human	genbank	58_37c	+1	model	silent	c.282	p.S94	0.943	NULL	NULL	-	no_errors
LOC727803	0	genome.wustl.edu	37	12	77378263	77378263	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	12	77378263	77378263	C	T	SNP	LOC727803	XR_015131.3	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC729944	0	genome.wustl.edu	37	11	78095401	78095401	+	RNA	SNP	A	A	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	78095401	78095401	A	T	SNP	LOC729944	XR_078439.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.002	-	-	-	pseudogene
MAP1A	0	genome.wustl.edu	37	15	43815340	43815340	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	15	43815340	43815340	A	G	SNP	MAP1A	NM_002373.5	human	genbank	58_37c	+1	reviewed	missense	c.1669	p.K557E	0.969	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
MSRA	0	genome.wustl.edu	37	8	10285663	10285663	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	8	10285663	10285663	T	C	SNP	MSRA	NM_012331.3	human	genbank	58_37c	+1	reviewed	silent	c.549	p.L183	0.690	HMMPfam_PMSR,superfamily_Peptide methionine sulfoxide reductase	HMMPfam_PMSR,superfamily_Peptide methionine sulfoxide reductase	-	no_errors
MST1P9	0	genome.wustl.edu	37	1	17087542	17087546	+	Splice_Site	DEL	GTGCT	GTGCT	-	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	GTGCT	GTGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	1	17087542	17087546	GTGCT	-	DEL	MST1P9	ENST00000389184	human	ensembl	58_37c	-1	known	splice_site_del	c.NULL	NULL	0.993:0.992:0.992:0.992:0.993	-	-	-	no_coding_region:pseudogene
MYH9	0	genome.wustl.edu	37	22	36680272	36680272	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	22	36680272	36680272	G	A	SNP	MYH9	NM_002473.4	human	genbank	58_37c	-1	reviewed	nonsense	c.5632	p.Q1878*	1.000	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_Regulator of G-protein signaling RGS,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NBPF9	0	genome.wustl.edu	37	1	144828548	144828548	+	Missense_Mutation	SNP	G	G	A	rs2938627	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	1	144828548	144828548	G	A	SNP	NBPF9	ENST00000338347	human	ensembl	58_37c	+1	known	missense	c.1594	p.G532S	0.000	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_start_codon
NEUROG3	0	genome.wustl.edu	37	10	71332562	71332562	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	10	71332562	71332562	G	T	SNP	NEUROG3	NM_020999.3	human	genbank	58_37c	-1	reviewed	missense	c.238	p.Q80K	0.996	superfamily_HLH_basic	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
NF1	0	genome.wustl.edu	37	17	29527502	29527503	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	17	29527502	29527503	AG	-	DEL	NF1	NM_001042492.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.951_952	p.E318fs	0.909:1.000	NULL	HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP	-	no_errors
NLRP10	0	genome.wustl.edu	37	11	7982328	7982328	+	Silent	SNP	T	T	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	7982328	7982328	T	A	SNP	NLRP10	NM_176821.3	human	genbank	58_37c	-1	reviewed	silent	c.831	p.L277	0.000	HMMPfam_NACHT,superfamily_SSF52540	HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52540	-	no_errors
NLRP11	0	genome.wustl.edu	37	19	56320356	56320356	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	19	56320356	56320356	C	T	SNP	NLRP11	NM_145007.3	human	genbank	58_37c	-1	validated	silent	c.1620	p.T540	0.000	NULL	PatternScan_CU2_MONOOXYGENASE_1,HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like	-	no_errors
NTRK2	0	genome.wustl.edu	37	9	87366922	87366922	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	9	87366922	87366922	G	A	SNP	NTRK2	NM_006180.3	human	genbank	58_37c	+1	reviewed	missense	c.1318	p.A440T	1.000	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_LRR_1,PatternScan_RECEPTOR_TYR_KIN_II,HMMSmart_IGc2,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
ODZ4	0	genome.wustl.edu	37	11	78387425	78387425	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	78387425	78387425	G	T	SNP	ODZ4	NM_001098816.2	human	genbank	58_37c	-1	validated	silent	c.5268	p.V1756	1.000	superfamily_TolB_C	HMMPfam_NHL,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_TolB_C,superfamily_SSF57196	-	no_errors
ONECUT1	0	genome.wustl.edu	37	15	53081031	53081031	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	15	53081031	53081031	A	G	SNP	ONECUT1	NM_004498.1	human	genbank	58_37c	-1	provisional	missense	c.1051	p.W351R	1.000	HMMPfam_CUT	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like	-	no_errors
OR5M10	0	genome.wustl.edu	37	11	56344846	56344847	+	Missense_Mutation	DNP	TT	TT	AG	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	56344846	56344847	TT	AG	DNP	OR5M10	NM_001004741.1	human	genbank	58_37c	-1	provisional	missense	c.352_351	p.M118L	0.996:0.000	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR5M11	0	genome.wustl.edu	37	11	56310459	56310459	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	56310459	56310459	G	T	SNP	OR5M11	NM_001005245.1	human	genbank	58_37c	-1	provisional	missense	c.275	p.S92Y	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PGBD1	0	genome.wustl.edu	37	6	28269872	28269872	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	6	28269872	28269872	G	A	SNP	PGBD1	NM_032507.3	human	genbank	58_37c	+1	reviewed	silent	c.2241	p.S747	0.089	NULL	HMMPfam_SCAN,HMMSmart_SCAN	-	no_errors
PIGR	0	genome.wustl.edu	37	1	207104865	207104865	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	1	207104865	207104865	T	C	SNP	PIGR	NM_002644.3	human	genbank	58_37c	-1	reviewed	missense	c.2176	p.K726E	0.000	NULL	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
PIK3C2A	0	genome.wustl.edu	37	11	17118747	17118747	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	17118747	17118747	G	C	SNP	PIK3C2A	NM_002645.2	human	genbank	58_37c	-1	validated	missense	c.4183	p.Q1395E	1.000	HMMSmart_SM00146	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI3K_rbd,HMMSmart_SM00144,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_PI3Ka,HMMSmart_SM00145,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_PI3K_C2,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_Ubiquitin-like	-	no_errors
PIWIL4	0	genome.wustl.edu	37	11	94322383	94322383	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	94322383	94322383	G	T	SNP	PIWIL4	NM_152431.2	human	genbank	58_37c	+1	validated	silent	c.1011	p.V337	0.281	HMMPfam_PAZ,superfamily_PAZ domain	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like,superfamily_PAZ domain	-	no_errors
PLAC8	0	genome.wustl.edu	37	4	84015928	84015928	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	4	84015928	84015928	T	C	SNP	PLAC8	NM_001130715.1	human	genbank	58_37c	-1	validated	missense	c.260	p.D87G	1.000	HMMPfam_PLAC8	HMMPfam_PLAC8	-	no_errors
PRKD3	0	genome.wustl.edu	37	2	37543569	37543573	+	Frame_Shift_Del	DEL	CTTAG	CTTAG	-	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	CTTAG	CTTAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	2	37543569	37543573	CTTAG	-	DEL	PRKD3	NM_005813.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.99_95	p.P32fs	0.997:0.996:0.994:0.917:1.000	NULL	HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	no_errors
RNASEH2C	0	genome.wustl.edu	37	11	65487853	65487866	+	Frame_Shift_Del	DEL	CCCGTAGACAGCGG	CCCGTAGACAGCGG	-	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	CCCGTAGACAGCGG	CCCGTAGACAGCGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	65487853	65487866	CCCGTAGACAGCGG	-	DEL	RNASEH2C	NM_032193.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.208_195	p.C67fs	0.993:0.842:0.851:0.840:0.767:0.822:0.799:0.002:0.000:0.000:0.077:0.991:1.000:1.000	HMMPfam_RNase_H1_sml	HMMPfam_RNase_H1_sml	-	no_errors
ROBO2	0	genome.wustl.edu	37	3	77614243	77614243	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	3	77614243	77614243	T	A	SNP	ROBO2	NM_002942.3	human	genbank	58_37c	+1	reviewed	missense	c.1821	p.S607R	0.996	HMMPfam_fn3,superfamily_Fibronectin type III	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
RP1	0	genome.wustl.edu	37	8	55540278	55540279	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	8	55540278	55540279	-	T	INS	RP1	NM_006269.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.3836_3837	p.P1282fs	0.000:0.000	NULL	HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837	-	no_errors
SACS	0	genome.wustl.edu	37	13	23913912	23913912	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	13	23913912	23913912	C	T	SNP	SACS	NM_014363.4	human	genbank	58_37c	-1	reviewed	missense	c.4103	p.S1368N	1.000	NULL	HMMPfam_ubiquitin,superfamily_Chaperone J-domain,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HEPN,HMMSmart_SM00748,superfamily_Ubiquitin-like,superfamily_Nucleotidyltransferase substrate binding subunit/domain	-	no_errors
SBK2	0	genome.wustl.edu	37	19	56047657	56047657	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	19	56047657	56047657	G	T	SNP	SBK2	NM_001101401.1	human	genbank	58_37c	-1	provisional	missense	c.5	p.P2H	0.238	NULL	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
SCML1	0	genome.wustl.edu	37	X	17770041	17770042	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	X	17770041	17770042	AG	-	DEL	SCML1	NM_001037540.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.810_811	p.D271fs	0.000:0.999	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain	-	no_errors
SERPINE2	0	genome.wustl.edu	37	2	224847402	224847402	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	2	224847402	224847402	T	C	SNP	SERPINE2	NM_001136530.1	human	genbank	58_37c	-1	validated	missense	c.1017	p.I339M	1.000	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
SHPRH	0	genome.wustl.edu	37	6	146247363	146247363	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	6	146247363	146247363	G	A	SNP	SHPRH	NM_001042683.2	human	genbank	58_37c	-1	validated	missense	c.3298	p.R1100C	0.996	NULL	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00184,HMMSmart_SM00249,HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00487,PatternScan_ZF_RING_1,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_""Winged helix"" DNA-binding domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_RING/U-box"	-	no_errors
SLC43A2	0	genome.wustl.edu	37	17	1486583	1486583	+	Missense_Mutation	SNP	G	G	T	rs145630054	byFrequency	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	17	1486583	1486583	G	T	SNP	SLC43A2	NM_152346.1	human	genbank	58_37c	-1	provisional	missense	c.1265	p.T422N	1.000	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SRCAP	0	genome.wustl.edu	37	16	30723194	30723197	+	Frame_Shift_Del	DEL	CATT	CATT	-	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	CATT	CATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	16	30723194	30723197	CATT	-	DEL	SRCAP	NM_006662.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.1531_1534	p.H511fs	0.051:0.029:0.007:0.723	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,HMMPfam_AT_hook,HMMSmart_SM00384,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SSPO	0	genome.wustl.edu	37	7	149481184	149481184	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	7	149481184	149481184	A	G	SNP	SSPO	ENST00000378016	human	ensembl	58_37c	+1	known	missense	c.2666	p.Y889C	0.431	HMMSmart_SM00214,superfamily_PMP inhibitors	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,PatternScan_BPTI_KUNITZ_1,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_Galactose-binding domain-like,PatternScan_EGF_1,HMMPfam_C8,PatternScan_GLYCO_HORMONE_BETA_1,HMMPfam_TIL	-	no_errors
SUPT7L	0	genome.wustl.edu	37	2	27883995	27883996	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	2	27883995	27883996	TC	-	DEL	SUPT7L	NM_014860.1	human	genbank	58_37c	-1	provisional	frame_shift_del	c.275_274	p.E92fs	1.000:1.000	NULL	HMMPfam_Bromo_TP,HMMSmart_SM00576	-	no_errors
TCEAL3	0	genome.wustl.edu	37	X	102864236	102864236	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	X	102864236	102864236	G	A	SNP	TCEAL3	NM_001006933.1	human	genbank	58_37c	+1	reviewed	missense	c.244	p.G82S	0.821	HMMPfam_TFA	HMMPfam_TFA	-	no_errors
TH	0	genome.wustl.edu	37	11	2192959	2192959	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	2192959	2192959	C	G	SNP	TH	NM_199292.2	human	genbank	58_37c	-1	reviewed	missense	c.58	p.E20Q	1.000	NULL	PatternScan_BIOPTERIN_HYDROXYL,HMMPfam_Biopterin_H,superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains,superfamily_ACT-like	-	no_errors
TMEM115	0	genome.wustl.edu	37	3	50392897	50392897	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	3	50392897	50392897	T	C	SNP	TMEM115	NM_007024.4	human	genbank	58_37c	-1	validated	silent	c.933	p.E311	0.985	NULL	HMMPfam_DUF1751	-	no_errors
TOP3B	0	genome.wustl.edu	37	22	22318572	22318572	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	22	22318572	22318572	A	T	SNP	TOP3B	ENST00000457270	human	ensembl	58_37c	-1	known	missense	c.443	p.L148H	0.032	superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00437,HMMPfam_Topoisom_bac	PatternScan_TOPOISOMERASE_I_PROK,superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00437,HMMPfam_Topoisom_bac	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TP53	0	genome.wustl.edu	37	17	7577082	7577082	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	17	7577082	7577082	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.856	p.E286K	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TUBA1A	0	genome.wustl.edu	37	12	49580453	49580453	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	12	49580453	49580453	G	A	SNP	TUBA1A	NM_006009.2	human	genbank	58_37c	-1	reviewed	missense	c.167	p.T56M	1.000	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like	HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like	-	no_errors
UMODL1	0	genome.wustl.edu	37	21	43543099	43543099	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	21	43543099	43543099	G	C	SNP	UMODL1	NM_173568.3	human	genbank	58_37c	+1	validated	missense	c.3370	p.E1124Q	0.992	HMMPfam_Zona_pellucida,HMMSmart_SM00241	HMMPfam_SEA,PatternScan_ASX_HYDROXYL,HMMPfam_Zona_pellucida,HMMSmart_SM00241,HMMSmart_SM00179,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_WAP,HMMSmart_SM00217,superfamily_Elafin-like,superfamily_Fibronectin type III,HMMPfam_EMI,HMMPfam_EGF_CA,PatternScan_4_DISULFIDE_CORE,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
VWF	0	genome.wustl.edu	37	12	6122772	6122772	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	12	6122772	6122772	T	C	SNP	VWF	NM_000552.3	human	genbank	58_37c	-1	reviewed	missense	c.5495	p.D1832G	0.913	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_VWA,HMMSmart_SM00327,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL,superfamily_vWA-like	-	no_errors
ZC3H13	0	genome.wustl.edu	37	13	46549603	46549604	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	13	46549603	46549604	CT	-	DEL	ZC3H13	NM_015070.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.2283_2282	p.E761fs	0.882:0.999	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF90229	-	no_errors
