Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
A2M	0	genome.wustl.edu	37	12	9242989	9242989	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	12	9242989	9242989	C	T	SNP	A2M	NM_000014.4	human	genbank	58_37c	-1	reviewed	silent	c.2559	p.R853	0.385	NULL	HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors
ADCK4	0	genome.wustl.edu	37	19	41209450	41209450	+	Silent	SNP	G	G	A	rs150264062	byFrequency	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	19	41209450	41209450	G	A	SNP	ADCK4	NM_024876.3	human	genbank	58_37c	-1	validated	silent	c.795	p.P265	0.001	HMMPfam_ABC1,superfamily_Protein kinase-like (PK-like)	HMMPfam_ABC1,superfamily_Protein kinase-like (PK-like)	-	no_errors
AGBL1	0	genome.wustl.edu	37	15	86940618	86940618	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	15	86940618	86940618	T	C	SNP	AGBL1	NM_152336.2	human	genbank	58_37c	+1	validated	missense	c.2258	p.I753T	1.000	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases	HMMPfam_Peptidase_M14,superfamily_ARM repeat,superfamily_Zn-dependent exopeptidases	-	no_errors
AKAP4	0	genome.wustl.edu	37	X	49957994	49957994	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	X	49957994	49957994	T	A	SNP	AKAP4	NM_003886.2	human	genbank	58_37c	-1	reviewed	missense	c.1370	p.D457V	0.070	HMMPfam_AKAP_110,HMMSmart_SM00807	HMMPfam_AKAP_110,HMMPfam_RII_binding_1,HMMSmart_SM00807	-	no_errors
ARHGAP39	0	genome.wustl.edu	37	8	145773342	145773344	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	8	145773342	145773344	CTG	-	DEL	ARHGAP39	NM_025251.1	human	genbank	58_37c	-1	validated	in_frame_del	c.1128_1126	p.Q376in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_MyTH4,HMMSmart_SM00139,HMMPfam_WW,HMMSmart_SM00456,superfamily_WW domain,superfamily_GTPase activation domain GAP	-	no_errors
ATF1	0	genome.wustl.edu	37	12	51207889	51207889	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	12	51207889	51207889	C	T	SNP	ATF1	NM_005171.3	human	genbank	58_37c	+1	validated	missense	c.425	p.T142I	0.927	NULL	HMMPfam_pKID,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1	-	no_errors
BET3L	0	genome.wustl.edu	37	6	116861558	116861558	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	6	116861558	116861558	T	C	SNP	BET3L	NM_001139444.2	human	genbank	58_37c	-1	validated	missense	c.208	p.S70G	0.994	HMMPfam_TRAPP	HMMPfam_TRAPP	-	no_errors
BTNL8	0	genome.wustl.edu	37	5	180335598	180335598	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	5	180335598	180335598	T	G	SNP	BTNL8	NM_001040462.2	human	genbank	58_37c	+1	validated	missense	c.62	p.V21G	0.867	HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00409,HMMPfam_SPRY,HMMSmart_SM00589,HMMPfam_V-set,HMMSmart_SM00449,superfamily_Immunoglobulin	-	no_errors
CATSPERB	0	genome.wustl.edu	37	14	92047329	92047329	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	14	92047329	92047329	C	T	SNP	CATSPERB	NM_024764.2	human	genbank	58_37c	-1	validated	silent	c.3255	p.P1085	0.000	NULL	NULL	-	no_errors
CD109	0	genome.wustl.edu	37	6	74466405	74466405	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	6	74466405	74466405	G	A	SNP	CD109	NM_133493.3	human	genbank	58_37c	+1	reviewed	missense	c.673	p.V225I	1.000	HMMPfam_A2M_N	HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors
CELF4	0	genome.wustl.edu	37	18	35145386	35145386	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	18	35145386	35145386	G	A	SNP	CELF4	NM_020180.3	human	genbank	58_37c	-1	reviewed	silent	c.219	p.L73	1.000	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
CHD1L	0	genome.wustl.edu	37	1	146758174	146758174	+	Missense_Mutation	SNP	G	G	C	rs142193146	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	146758174	146758174	G	C	SNP	CHD1L	NM_004284.3	human	genbank	58_37c	+1	validated	missense	c.2218	p.V740L	0.998	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CHRM2	0	genome.wustl.edu	37	7	136700646	136700646	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	136700646	136700646	A	G	SNP	CHRM2	NM_000739.2	human	genbank	58_37c	+1	reviewed	missense	c.1034	p.E345G	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
CHST15	0	genome.wustl.edu	37	10	125771954	125771954	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	10	125771954	125771954	A	T	SNP	CHST15	NM_015892.2	human	genbank	58_37c	-1	validated	missense	c.1390	p.W464R	1.000	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
COBLL1	0	genome.wustl.edu	37	2	165561493	165561493	+	Silent	SNP	C	C	T	rs138711091	byFrequency	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	2	165561493	165561493	C	T	SNP	COBLL1	NM_014900.3	human	genbank	58_37c	-1	validated	silent	c.1119	p.P373	0.001	NULL	HMMPfam_Cobl	-	no_errors
DARS2	0	genome.wustl.edu	37	1	173826805	173826805	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	173826805	173826805	T	A	SNP	DARS2	NM_018122.4	human	genbank	58_37c	+1	reviewed	missense	c.1900	p.S634T	0.397	superfamily_SSF55681	HMMPfam_GAD,HMMPfam_tRNA-synt_2,HMMPfam_tRNA_anti,superfamily_Nucleic_acid_OB,superfamily_SSF55261,superfamily_SSF55681	-	no_errors
DEFB129	0	genome.wustl.edu	37	20	210186	210186	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	20	210186	210186	G	A	SNP	DEFB129	NM_080831.2	human	genbank	58_37c	+1	validated	missense	c.326	p.S109N	0.000	NULL	NULL	-	no_errors
DGKD	0	genome.wustl.edu	37	2	234359581	234359581	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	2	234359581	234359581	G	A	SNP	DGKD	ENST00000430834	human	ensembl	58_37c	+1	known	missense	c.1034	p.R345H	0.003	NULL	HMMPfam_DAGK_cat,HMMSmart_SM00046	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
DIAPH3	0	genome.wustl.edu	37	13	60407364	60407364	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	13	60407364	60407364	C	T	SNP	DIAPH3	NM_001042517.1	human	genbank	58_37c	-1	validated	silent	c.2904	p.S968	0.000	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	PatternScan_RNASE_PANCREATIC,HMMSmart_SM00498,HMMPfam_Drf_DAD,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	-	no_errors
ENSG00000198804	0	genome.wustl.edu	37	MT	6094	6094	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	MT	6094	6094	T	C	SNP	ENSG00000198804	ENST00000361624	human	ensembl	58_37c	+1	known	missense	c.191	p.V64A	NULL	HMMPfam_COX1,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	mismatch_between_exon_seq_and_reference
ENSG00000198840	0	genome.wustl.edu	37	MT	10230	10230	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	MT	10230	10230	G	A	SNP	ENSG00000198840	ENST00000361227	human	ensembl	58_37c	+1	known	missense	c.172	p.V58M	NULL	HMMPfam_Oxidored_q4	HMMPfam_Oxidored_q4	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000198886	0	genome.wustl.edu	37	MT	11246	11246	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	MT	11246	11246	G	A	SNP	ENSG00000198886	ENST00000361381	human	ensembl	58_37c	+1	known	missense	c.487	p.A163T	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000198938	0	genome.wustl.edu	37	MT	9787	9787	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	MT	9787	9787	G	A	SNP	ENSG00000198938	ENST00000362079	human	ensembl	58_37c	+1	known	missense	c.581	p.G194D	NULL	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
FBXW10	0	genome.wustl.edu	37	17	18670066	18670066	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	17	18670066	18670066	G	C	SNP	FBXW10	NM_031456.3	human	genbank	58_37c	+1	validated	missense	c.1595	p.R532T	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,HMMPfam_F-box,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_F-box domain	-	no_errors
GOLGA6L5	0	genome.wustl.edu	37	15	85053254	85053254	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	15	85053254	85053254	T	C	SNP	GOLGA6L5	NR_003246.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.973	-	-	-	pseudogene
GOLIM4	0	genome.wustl.edu	37	3	167750551	167750551	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	3	167750551	167750551	C	G	SNP	GOLIM4	NM_014498.3	human	genbank	58_37c	-1	reviewed	missense	c.933	p.E311D	0.001	NULL	NULL	-	no_errors
GRINA	0	genome.wustl.edu	37	8	145066211	145066211	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	8	145066211	145066211	T	G	SNP	GRINA	NM_000837.1	human	genbank	58_37c	+1	validated	missense	c.658	p.F220V	1.000	HMMPfam_UPF0005	PatternScan_BI1,HMMPfam_UPF0005	-	no_errors
HBG1	0	genome.wustl.edu	37	11	5269581	5269582	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	11	5269581	5269582	-	A	INS	HBG1	ENST00000380256	human	ensembl	58_37c	-1	known	frame_shift_ins	c.450_449	p.P151fs	0.000:0.000	NULL	HMMPfam_Globin,superfamily_Globin-like	-	no_errors
HHLA2	0	genome.wustl.edu	37	3	108094632	108094632	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	3	108094632	108094632	G	T	SNP	HHLA2	NM_007072.2	human	genbank	58_37c	+1	provisional	missense	c.1144	p.D382Y	0.000	NULL	HMMPfam_C1-set,HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
IL1RAPL1	0	genome.wustl.edu	37	X	29301321	29301321	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	X	29301321	29301321	G	A	SNP	IL1RAPL1	NM_014271.3	human	genbank	58_37c	+1	reviewed	missense	c.349	p.A117T	0.985	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
KCNJ2	0	genome.wustl.edu	37	17	68171571	68171571	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	17	68171571	68171571	G	A	SNP	KCNJ2	NM_000891.2	human	genbank	58_37c	+1	reviewed	missense	c.391	p.A131T	0.999	HMMPfam_IRK,superfamily_Voltage-gated potassium channels	HMMPfam_IRK,HMMPfam_IRK_N,superfamily_E set domains,superfamily_Voltage-gated potassium channels	-	no_errors
KCNT2	0	genome.wustl.edu	37	1	196251440	196251440	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	196251440	196251440	C	A	SNP	KCNT2	NM_198503.2	human	genbank	58_37c	-1	validated	missense	c.2744	p.G915V	1.000	NULL	HMMPfam_BK_channel_a,HMMPfam_Ion_trans_2,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Voltage-gated potassium channels	-	no_errors
KIAA1967	0	genome.wustl.edu	37	8	22470552	22470552	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	8	22470552	22470552	C	T	SNP	KIAA1967	NM_021174.4	human	genbank	58_37c	+1	validated	missense	c.607	p.R203C	1.000	NULL	NULL	-	no_errors
L1CAM	0	genome.wustl.edu	37	X	153129922	153129922	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	X	153129922	153129922	A	G	SNP	L1CAM	NM_000425.3	human	genbank	58_37c	-1	reviewed	silent	c.3177	p.G1059	0.000	superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
LONP2	0	genome.wustl.edu	37	16	48304031	48304031	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	16	48304031	48304031	A	G	SNP	LONP2	NM_031490.2	human	genbank	58_37c	+1	provisional	missense	c.1087	p.K363E	1.000	superfamily_SSF52540	HMMPfam_LON,HMMSmart_AAA,HMMPfam_AAA,PatternScan_LON_SER,HMMPfam_Lon_C,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_SSF52540	-	no_errors
LRCH2	0	genome.wustl.edu	37	X	114414224	114414224	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	X	114414224	114414224	G	T	SNP	LRCH2	NM_020871.3	human	genbank	58_37c	-1	validated	missense	c.712	p.H238N	1.000	HMMPfam_LRR_1,superfamily_SSF52058	HMMPfam_LRR_1,HMMPfam_CH,HMMSmart_CH,HMMSmart_LRR_TYP,superfamily_Calponin-homology,superfamily_SSF52058	-	no_errors
LYRM5	0	genome.wustl.edu	37	12	25356905	25356908	+	Frame_Shift_Del	DEL	TTCT	TTCT	-	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	TTCT	TTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	12	25356905	25356908	TTCT	-	DEL	LYRM5	NM_001001660.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.15_18	p.S6fs	1.000:1.000:1.000:0.992	HMMPfam_Complex1_LYR	HMMPfam_Complex1_LYR	-	no_errors
MT1M	0	genome.wustl.edu	37	16	56666647	56666647	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	16	56666647	56666647	G	A	SNP	MT1M	NM_176870.2	human	genbank	58_37c	+1	validated	missense	c.4	p.D2N	0.967	HMMPfam_Metallothio,superfamily_Metallothionein_sfam	HMMPfam_Metallothio,superfamily_Metallothionein_sfam,PatternScan_METALLOTHIONEIN_VRT	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100612955	100612956	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	100612955	100612956	-	CTG	INS	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	in_frame_ins	c.52_53	p.19in_frame_insA	0.000:0.000	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MUC17	0	genome.wustl.edu	37	7	100681604	100681604	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	100681604	100681604	C	A	SNP	MUC17	NM_001040105.1	human	genbank	58_37c	+1	provisional	missense	c.6907	p.P2303T	0.596	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
MUC20	0	genome.wustl.edu	37	3	195452814	195452814	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	3	195452814	195452814	C	T	SNP	MUC20	NM_152673.2	human	genbank	58_37c	+1	reviewed	missense	c.827	p.T276M	0.002	NULL	NULL	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1266156	1266156	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	11	1266156	1266156	G	C	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	missense	c.8055	p.Q2685H	0.001	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MYO5B	0	genome.wustl.edu	37	18	47518741	47518741	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	18	47518741	47518741	G	T	SNP	MYO5B	NM_001080467.2	human	genbank	58_37c	-1	reviewed	missense	c.673	p.Q225K	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NGLY1	0	genome.wustl.edu	37	3	25792650	25792650	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	3	25792650	25792650	C	T	SNP	NGLY1	ENST00000280699	human	ensembl	58_37c	-1	known	missense	c.571	p.G191S	0.999	NULL	HMMSmart_SM00580,HMMPfam_PUB	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
OMA1	0	genome.wustl.edu	37	1	58999654	58999654	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	58999654	58999654	C	T	SNP	OMA1	NM_145243.3	human	genbank	58_37c	-1	provisional	missense	c.982	p.E328K	1.000	HMMPfam_Peptidase_M48,PatternScan_ZINC_PROTEASE	HMMPfam_Peptidase_M48,PatternScan_ZINC_PROTEASE	-	no_errors
OPHN1	0	genome.wustl.edu	37	X	67417078	67417078	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	X	67417078	67417078	A	G	SNP	OPHN1	NM_002547.2	human	genbank	58_37c	-1	reviewed	missense	c.1054	p.S352P	0.997	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	HMMPfam_RhoGAP,HMMSmart_RhoGAP,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,superfamily_SSF50729	-	no_errors
PCLO	0	genome.wustl.edu	37	7	82784526	82784526	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	82784526	82784526	T	C	SNP	PCLO	NM_033026.5	human	genbank	58_37c	-1	validated	silent	c.1431	p.A477	0.010	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_zf-piccolo,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
PDCD6IP	0	genome.wustl.edu	37	3	33905540	33905540	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	3	33905540	33905540	A	G	SNP	PDCD6IP	NM_013374.4	human	genbank	58_37c	+1	validated	silent	c.2163	p.S721	0.196	NULL	HMMPfam_BRO1	-	no_errors
PGR	0	genome.wustl.edu	37	11	100922227	100922227	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	11	100922227	100922227	C	A	SNP	PGR	NM_000926.4	human	genbank	58_37c	-1	reviewed	missense	c.2285	p.G762V	0.995	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain	HMMPfam_Prog_receptor,HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
PKP2	0	genome.wustl.edu	37	12	32949226	32949226	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	12	32949226	32949226	T	C	SNP	PKP2	NM_004572.3	human	genbank	58_37c	-1	reviewed	missense	c.2306	p.E769G	1.000	superfamily_ARM repeat	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat	-	no_errors
PMS1	0	genome.wustl.edu	37	2	190682787	190682787	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	2	190682787	190682787	A	T	SNP	PMS1	NM_000534.4	human	genbank	58_37c	+1	reviewed	nonsense	c.463	p.R155*	1.000	superfamily_ATP_bd_ATPase	HMMPfam_HMG_box,HMMSmart_HMG,HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase,superfamily_HMG-box,HMMPfam_DNA_mis_repair,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal_S5_D2-typ_fold	-	no_errors
POM121	0	genome.wustl.edu	37	7	72418986	72418986	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	72418986	72418986	T	A	SNP	POM121	ENST00000395270	human	ensembl	58_37c	+1	known	missense	c.2977	p.S993T	0.000	NULL	NULL	-	no_errors
RELN	0	genome.wustl.edu	37	7	103214716	103214716	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	103214716	103214716	G	A	SNP	RELN	NM_005045.3	human	genbank	58_37c	-1	reviewed	missense	c.4334	p.P1445L	0.998	NULL	HMMPfam_Reeler,HMMSmart_EGF,superfamily_Sialidase,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF57196	-	no_errors
RPRD1A	0	genome.wustl.edu	37	18	33606996	33606996	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	18	33606996	33606996	G	A	SNP	RPRD1A	NM_018170.3	human	genbank	58_37c	-1	provisional	missense	c.656	p.A219V	1.000	NULL	HMMSmart_SM00582,HMMPfam_DUF618,superfamily_ENTH/VHS domain	-	no_errors
RPTOR	0	genome.wustl.edu	37	17	78897383	78897383	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	17	78897383	78897383	G	A	SNP	RPTOR	NM_020761.2	human	genbank	58_37c	+1	reviewed	silent	c.2718	p.P906	0.028	NULL	HMMPfam_HEAT,HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40	-	no_errors
RYR2	0	genome.wustl.edu	37	1	237948029	237948029	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	237948029	237948029	G	A	SNP	RYR2	NM_001035.2	human	genbank	58_37c	+1	reviewed	silent	c.13017	p.Q4339	1.000	HMMPfam_RR_TM4-6	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SEC23B	0	genome.wustl.edu	37	20	18507143	18507143	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	20	18507143	18507143	G	C	SNP	SEC23B	NM_006363.4	human	genbank	58_37c	+1	reviewed	missense	c.961	p.D321H	1.000	HMMPfam_Sec23_trunk,superfamily_SSF53300,superfamily_SSF81995	HMMPfam_zf-Sec23_Sec24,superfamily_Znf_Sec23_Sec24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Sec23_helical,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,superfamily_SSF53300,superfamily_SSF81995,superfamily_SSF82754	-	no_errors
SEMA5B	0	genome.wustl.edu	37	3	122630348	122630348	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	3	122630348	122630348	G	A	SNP	SEMA5B	ENST00000451541	human	ensembl	58_37c	-1	known	missense	c.218	p.P73L	0.489	NULL	HMMPfam_TSP_1,superfamily_TSP-1 type 1 repeat	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SEMG2	0	genome.wustl.edu	37	20	43851246	43851246	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	20	43851246	43851246	A	C	SNP	SEMG2	NM_003008.2	human	genbank	58_37c	+1	reviewed	missense	c.973	p.K325Q	0.002	HMMPfam_Semenogelin	HMMPfam_Semenogelin	-	no_errors
SLC25A11	0	genome.wustl.edu	37	17	4841331	4841331	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	17	4841331	4841331	T	C	SNP	SLC25A11	NM_003562.4	human	genbank	58_37c	-1	validated	missense	c.776	p.Y259C	1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
SPPL3	0	genome.wustl.edu	37	12	121222339	121222339	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	12	121222339	121222339	G	C	SNP	SPPL3	NM_139015.3	human	genbank	58_37c	-1	validated	missense	c.248	p.S83C	1.000	HMMSmart_SM00730,HMMPfam_Peptidase_A22B	HMMSmart_SM00730,HMMPfam_Peptidase_A22B	-	no_errors
ST3GAL2	0	genome.wustl.edu	37	16	70432295	70432295	+	Missense_Mutation	SNP	G	G	A	rs149280914	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	16	70432295	70432295	G	A	SNP	ST3GAL2	NM_006927.3	human	genbank	58_37c	-1	reviewed	missense	c.139	p.R47W	1.000	NULL	HMMPfam_Glyco_transf_29	-	no_errors
STK35	0	genome.wustl.edu	37	20	2097914	2097914	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	20	2097914	2097914	T	G	SNP	STK35	NM_080836.3	human	genbank	58_37c	+1	reviewed	missense	c.1096	p.S366A	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
TNN	0	genome.wustl.edu	37	1	175052955	175052955	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	175052955	175052955	A	C	SNP	TNN	NM_022093.1	human	genbank	58_37c	+1	validated	missense	c.1118	p.N373T	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00181,superfamily_Fibronectin type III,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	rs121912666	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	17	7578190	7578190	T	C	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.659	p.Y220C	0.998	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRIP12	0	genome.wustl.edu	37	2	230661314	230661315	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	2	230661314	230661315	-	A	INS	TRIP12	NM_004238.1	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.3584_3583	p.S1195fs	1.000:1.000	NULL	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WWE,superfamily_ARM-type_fold	-	no_errors
TRIT1	0	genome.wustl.edu	37	1	40307439	40307439	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	40307439	40307439	G	C	SNP	TRIT1	NM_017646.4	human	genbank	58_37c	-1	validated	missense	c.1381	p.Q461E	0.000	NULL	HMMPfam_IPPT,HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TRRAP	0	genome.wustl.edu	37	7	98528347	98528347	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	98528347	98528347	T	C	SNP	TRRAP	NM_003496.2	human	genbank	58_37c	+1	validated	missense	c.3485	p.V1162A	1.000	superfamily_ARM repeat	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_COPPER_BLUE,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,superfamily_Protein prenylyltransferase,superfamily_TPR-like	-	no_errors
UBA6	0	genome.wustl.edu	37	4	68494810	68494810	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	4	68494810	68494810	C	G	SNP	UBA6	NM_018227.5	human	genbank	58_37c	-1	validated	missense	c.2379	p.Q793H	0.991	HMMPfam_UBACT,superfamily_Activating enzymes of the ubiquitin-like proteins	HMMPfam_UBACT,HMMPfam_ThiF,superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_UBA_e1_C,HMMPfam_UBA_e1_thiolCys	-	no_errors
WBP11P1	0	genome.wustl.edu	37	18	30092243	30092243	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	18	30092243	30092243	C	G	SNP	WBP11P1	NR_003558.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
WDR17	0	genome.wustl.edu	37	4	177072997	177072997	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	4	177072997	177072997	C	G	SNP	WDR17	NM_170710.4	human	genbank	58_37c	+1	reviewed	missense	c.2411	p.S804C	1.000	NULL	HMMSmart_WD40,superfamily_Amine_DH_B_like,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ZFC3H1	0	genome.wustl.edu	37	12	72009006	72009006	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	12	72009006	72009006	A	C	SNP	ZFC3H1	NM_144982.4	human	genbank	58_37c	-1	validated	silent	c.5235	p.P1745	0.999	NULL	HMMSmart_SM00386,HMMPfam_zf-C3H1,superfamily_Protein prenylyltransferase	-	no_errors
ZKSCAN1	0	genome.wustl.edu	37	7	99631435	99631435	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	99631435	99631435	A	G	SNP	ZKSCAN1	NM_003439.1	human	genbank	58_37c	+1	validated	missense	c.1307	p.N436S	0.254	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF121	0	genome.wustl.edu	37	19	9677328	9677328	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	19	9677328	9677328	C	T	SNP	ZNF121	NM_001008727.2	human	genbank	58_37c	-1	validated	missense	c.461	p.R154K	0.001	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF274	0	genome.wustl.edu	37	19	58698334	58698334	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	19	58698334	58698334	G	C	SNP	ZNF274	ENST00000424679	human	ensembl	58_37c	+1	known	missense	c.181	p.D61H	1.000	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF335	0	genome.wustl.edu	37	20	44598176	44598176	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	20	44598176	44598176	A	G	SNP	ZNF335	NM_022095.3	human	genbank	58_37c	-1	reviewed	missense	c.356	p.V119A	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF804A	0	genome.wustl.edu	37	2	185803708	185803708	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	2	185803708	185803708	G	T	SNP	ZNF804A	NM_194250.1	human	genbank	58_37c	+1	provisional	silent	c.3585	p.L1195	1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
