Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ALDH5A1	0	genome.wustl.edu	37	6	24528350	24528350	+	Silent	SNP	G	G	C	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	6	24528350	24528350	G	C	SNP	ALDH5A1	NM_170740.1	human	genbank	58_37c	+1	reviewed	silent	c.1338	p.L446	0.497	HMMPfam_Aldedh,superfamily_ALDH-like	HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_ALDH-like	-	no_errors
ATP2A2	0	genome.wustl.edu	37	12	110780236	110780236	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	12	110780236	110780236	C	T	SNP	ATP2A2	NM_170665.3	human	genbank	58_37c	+1	reviewed	silent	c.2301	p.N767	0.974	superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
CLEC16A	0	genome.wustl.edu	37	16	11071088	11071088	+	Silent	SNP	G	G	T	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	16	11071088	11071088	G	T	SNP	CLEC16A	NM_015226.2	human	genbank	58_37c	+1	validated	silent	c.735	p.R245	0.998	NULL	PatternScan_C_TYPE_LECTIN_1,HMMPfam_FPL	-	no_errors
CRIPAK	0	genome.wustl.edu	37	4	1388378	1388379	+	Frame_Shift_Ins	INS	-	-	AC	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	4	1388378	1388379	-	AC	INS	CRIPAK	NM_175918.3	human	genbank	58_37c	+1	validated	frame_shift_ins	c.79_80	p.C27fs	0.696:0.833	NULL	HMMSmart_PostSET	-	no_errors
DPT	0	genome.wustl.edu	37	1	168683522	168683522	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	1	168683522	168683522	A	T	SNP	DPT	NM_001937.3	human	genbank	58_37c	-1	reviewed	missense	c.368	p.V123E	1.000	NULL	NULL	-	no_errors
DSPP	0	genome.wustl.edu	37	4	88537249	88537249	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	4	88537249	88537249	T	C	SNP	DSPP	ENST00000432448	human	ensembl	58_37c	+1	known	missense	c.1835	p.V612A	0.924	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_OPT,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_CitMHS,HMMPfam_C4dic_mal_tran,HMMPfam_OPT,HMMPfam_TerC,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1,HMMPfam_DUF2339	-	no_start_codon:no_stop_codon
EHD1	0	genome.wustl.edu	37	11	64645813	64645813	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	11	64645813	64645813	A	C	SNP	EHD1	NM_006795.2	human	genbank	58_37c	-1	reviewed	missense	c.124	p.F42V	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00027,HMMPfam_Dynamin_N,PatternScan_EF_HAND_1,superfamily_EF-hand,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ELFN2	0	genome.wustl.edu	37	22	37770887	37770887	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	22	37770887	37770887	G	A	SNP	ELFN2	NM_052906.3	human	genbank	58_37c	-1	validated	missense	c.688	p.R230W	0.296	HMMSmart_LRRCT	HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_FN3,superfamily_SSF52058	-	no_errors
ENSG00000205454	0	genome.wustl.edu	37	16	33020809	33020809	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	16	33020809	33020809	G	A	SNP	ENSG00000205454	ENST00000411420	human	ensembl	58_37c	+1	known	missense	c.217	p.D73N	0.034	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_start_codon:no_stop_codon
HDX	0	genome.wustl.edu	37	X	83723776	83723776	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	X	83723776	83723776	G	T	SNP	HDX	NM_144657.4	human	genbank	58_37c	-1	validated	missense	c.955	p.Q319K	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	no_errors
KIAA1632	0	genome.wustl.edu	37	18	43484051	43484051	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	18	43484051	43484051	C	T	SNP	KIAA1632	NM_020964.2	human	genbank	58_37c	-1	validated	missense	c.4361	p.R1454H	1.000	NULL	NULL	-	no_errors
LOC100129958	0	genome.wustl.edu	37	6	162989605	162989610	+	In_Frame_Del	DEL	AGGAGA	AGGAGA	-	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	AGGAGA	AGGAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	6	162989605	162989610	AGGAGA	-	DEL	LOC100129958	XM_001719102.1	human	genbank	58_37c	+1	model	in_frame_del	c.92_97	p.KE35in_frame_del	0.998:0.997:0.997:0.998:0.999:1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
LOC100133078	0	genome.wustl.edu	37	1	148247909	148247909	+	RNA	SNP	C	C	G	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	1	148247909	148247909	C	G	SNP	LOC100133078	XR_078734.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
LOC100288755	0	genome.wustl.edu	37	21	9865843	9865843	+	RNA	SNP	C	C	A	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	21	9865843	9865843	C	A	SNP	LOC100288755	XR_078568.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.031	-	-	-	pseudogene
LOC283685	0	genome.wustl.edu	37	15	23685300	23685301	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	15	23685300	23685301	TT	-	DEL	LOC283685	XM_002343322.1	human	genbank	58_37c	-1	model	frame_shift_del	c.1877_1876	p.K626fs	0.104:0.092	NULL	NULL	-	no_errors
LOC400986	0	genome.wustl.edu	37	2	96619735	96619735	+	Silent	SNP	A	A	G	rs2190034	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	2	96619735	96619735	A	G	SNP	LOC400986	XM_001717763.2	human	genbank	58_37c	-1	model	silent	c.210	p.D70	0.000	NULL	NULL	-	no_errors
LOC729057	0	genome.wustl.edu	37	22	16123224	16123224	+	RNA	SNP	C	C	A	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	22	16123224	16123224	C	A	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
MAP3K1	0	genome.wustl.edu	37	5	56177010	56177011	+	Frame_Shift_Ins	INS	-	-	ATAG	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	5	56177010	56177011	-	ATAG	INS	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.2280_2281	p.L763fs	0.954:0.994	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MST1P9	0	genome.wustl.edu	37	1	17083714	17083714	+	RNA	SNP	G	G	A	rs145347758	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	1	17083714	17083714	G	A	SNP	MST1P9	NR_002729.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.416	-	-	-	pseudogene
MUC2	0	genome.wustl.edu	37	11	1092800	1092800	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	11	1092800	1092800	T	G	SNP	MUC2	NM_002457.2	human	genbank	58_37c	+1	reviewed	missense	c.4619	p.I1540S	0.002	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_EGF_1,HMMPfam_C8	-	no_errors
MYCBPAP	0	genome.wustl.edu	37	17	48594830	48594830	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	17	48594830	48594830	C	A	SNP	MYCBPAP	ENST00000452039	human	ensembl	58_37c	+1	known	missense	c.510	p.S170R	0.000	NULL	NULL	-	no_stop_codon
NAV1	0	genome.wustl.edu	37	1	201757631	201757631	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	1	201757631	201757631	C	T	SNP	NAV1	NM_020443.4	human	genbank	58_37c	+1	reviewed	missense	c.3031	p.R1011C	1.000	NULL	HMMSmart_AAA,PatternScan_PPASE,superfamily_SSF52540	-	no_errors
NCOA3	0	genome.wustl.edu	37	20	46279837	46279839	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	20	46279837	46279839	CAG	-	DEL	NCOA3	NM_181659.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3763_3765	p.Q1258in_frame_del	0.584:0.607:0.598	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_DUF1518,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
NCOR1	0	genome.wustl.edu	37	17	16029431	16029435	+	Frame_Shift_Del	DEL	TTTCT	TTTCT	-	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	TTTCT	TTTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	17	16029431	16029435	TTTCT	-	DEL	NCOR1	NM_006311.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1599_1595	p.K532fs	1.000:1.000:1.000:1.000:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
NIPAL4	0	genome.wustl.edu	37	5	156899736	156899736	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	5	156899736	156899736	C	T	SNP	NIPAL4	NM_001099287.1	human	genbank	58_37c	+1	reviewed	missense	c.1169	p.T390I	1.000	HMMPfam_DUF803	HMMPfam_DUF803,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors
NSA2	0	genome.wustl.edu	37	5	74066543	74066544	+	Missense_Mutation	DNP	AA	AA	GC	rs151085943	byFrequency	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	5	74066543	74066544	AA	GC	DNP	NSA2	NM_014886.3	human	genbank	58_37c	+1	provisional	missense	c.430_431	p.K144A	1.000:1.000	HMMPfam_Ribosomal_S8e	HMMPfam_Ribosomal_S8e	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952075	178952075	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	3	178952075	178952075	A	T	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3130	p.N1044Y	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLB1	0	genome.wustl.edu	37	2	28796125	28796125	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	2	28796125	28796125	C	A	SNP	PLB1	ENST00000404858	human	ensembl	58_37c	+1	known	missense	c.1415	p.P472Q	0.001	HMMPfam_Lipase_GDSL,superfamily_SGNH hydrolase	HMMPfam_Lipase_GDSL,PatternScan_LIPASE_GDSL_SER,superfamily_SGNH hydrolase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
POLA1	0	genome.wustl.edu	37	X	24722586	24722586	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	X	24722586	24722586	G	T	SNP	POLA1	NM_016937.3	human	genbank	58_37c	+1	reviewed	nonsense	c.328	p.G110*	1.000	NULL	HMMPfam_DNA_pol_B_exo,HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_RNaseH_fold,HMMPfam_zf-DNA_Pol,PatternScan_DNA_POLYMERASE_B,superfamily_SSF56672,superfamily_SSF90234	-	no_errors
POTEM	0	genome.wustl.edu	37	14	19990641	19990641	+	Silent	SNP	C	C	T	rs138327719	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	14	19990641	19990641	C	T	SNP	POTEM	NM_001145442.1	human	genbank	58_37c	-1	provisional	silent	c.1434	p.K478	0.978	NULL	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
RYR3	0	genome.wustl.edu	37	15	33954810	33954810	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	15	33954810	33954810	G	A	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	silent	c.5079	p.T1693	0.223	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SF1	0	genome.wustl.edu	37	11	64535092	64535092	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	11	64535092	64535092	C	T	SNP	SF1	NM_004630.3	human	genbank	58_37c	-1	reviewed	silent	c.1293	p.P431	1.000	NULL	HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
SNRNP200	0	genome.wustl.edu	37	2	96959238	96959238	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	2	96959238	96959238	G	T	SNP	SNRNP200	NM_014014.3	human	genbank	58_37c	-1	reviewed	missense	c.1852	p.H618N	1.000	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_Sec63,HMMPfam_DEAD,HMMSmart_SM00487,HMMSmart_SM00611,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SOS1	0	genome.wustl.edu	37	2	39239446	39239446	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	2	39239446	39239446	G	A	SNP	SOS1	NM_005633.3	human	genbank	58_37c	-1	reviewed	silent	c.2211	p.I737	1.000	HMMSmart_SM00229,superfamily_Ras GEF	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_RasGEF,HMMSmart_SM00147,HMMPfam_Histone,superfamily_Ras GEF,superfamily_Histone-fold,PatternScan_RASGEF,superfamily_PH domain-like	-	no_errors
TPSB2	0	genome.wustl.edu	37	16	1279438	1279438	+	Missense_Mutation	SNP	C	T	T	rs1141968	byCluster	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	16	1279438	1279438	C	T	SNP	TPSB2	NM_024164.5	human	genbank	58_37c	-1	reviewed	missense	c.253	p.A85T	0.000	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TREM1	0	genome.wustl.edu	37	6	41250151	41250151	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	6	41250151	41250151	G	T	SNP	TREM1	NM_018643.2	human	genbank	58_37c	-1	provisional	missense	c.388	p.R130S	0.058	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
TRIM64B	0	genome.wustl.edu	37	11	89608899	89608899	+	Missense_Mutation	SNP	T	T	G	rs77843834	byFrequency	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	11	89608899	89608899	T	G	SNP	TRIM64B	ENST00000329862	human	ensembl	58_37c	-1	known	missense	c.287	p.E96A	0.000	HMMPfam_zf-B_box,HMMSmart_BBOX,superfamily_SSF57850	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
UHRF1BP1L	0	genome.wustl.edu	37	12	100452034	100452034	+	Silent	SNP	T	T	A	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	12	100452034	100452034	T	A	SNP	UHRF1BP1L	NM_015054.1	human	genbank	58_37c	-1	validated	silent	c.3021	p.S1007	0.297	NULL	NULL	-	no_errors
UNC80	0	genome.wustl.edu	37	2	210681761	210681761	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	2	210681761	210681761	G	A	SNP	UNC80	NM_032504.1	human	genbank	58_37c	+1	validated	silent	c.1464	p.T488	0.173	NULL	NULL	-	no_errors
ZNF384	0	genome.wustl.edu	37	12	6777070	6777072	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	12	6777070	6777072	TGC	-	DEL	ZNF384	NM_001135734.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1544_1542	p.Q516in_frame_del	0.291:0.350:0.379	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
