Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCE1	0	genome.wustl.edu	37	4	146038513	146038513	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	4	146038513	146038513	A	G	SNP	ABCE1	NM_001040876.1	human	genbank	58_37c	+1	reviewed	missense	c.869	p.Y290C	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Fer4,HMMPfam_ABC_tran,HMMSmart_SM00382,HMMPfam_RLI,PatternScan_ABC_TRANSPORTER_1,PatternScan_4FE4S_FER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_4Fe-4S ferredoxins	-	no_errors
AOAH	0	genome.wustl.edu	37	7	36552787	36552788	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	7	36552787	36552788	-	G	INS	AOAH	ENST00000431169	human	ensembl	58_37c	-1	known	frame_shift_ins	c.1918_1917	p.Y639fs	0.000:0.000	NULL	HMMPfam_Lipase_GDSL,HMMPfam_SapB_2,HMMSmart_SM00741,superfamily_Saposin,PatternScan_EGF_1	-	no_errors
BIVM	0	genome.wustl.edu	37	13	103490993	103490993	+	Silent	SNP	A	A	G	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	13	103490993	103490993	A	G	SNP	BIVM	NM_017693.3	human	genbank	58_37c	+1	validated	silent	c.1122	p.K374	0.998	NULL	NULL	-	no_errors
CCDC6	0	genome.wustl.edu	37	10	61552827	61552827	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	10	61552827	61552827	G	A	SNP	CCDC6	NM_005436.3	human	genbank	58_37c	-1	validated	missense	c.1273	p.R425W	1.000	NULL	HMMPfam_DUF2046	-	no_errors
CDH1	0	genome.wustl.edu	37	16	68772218	68772218	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	16	68772218	68772218	C	T	SNP	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	nonsense	c.67	p.Q23*	0.982	superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CTU2	0	genome.wustl.edu	37	16	88780635	88780636	+	Frame_Shift_Ins	INS	-	-	GTGT	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	16	88780635	88780636	-	GTGT	INS	CTU2	NM_001012759.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1097_1098	p.T367fs	1.000:1.000	HMMPfam_DUF2392,superfamily_Adenine nucleotide alpha hydrolases-like	HMMPfam_DUF2392,superfamily_Adenine nucleotide alpha hydrolases-like	-	no_errors
EFCAB5	0	genome.wustl.edu	37	17	28378166	28378166	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	17	28378166	28378166	G	C	SNP	EFCAB5	NM_198529.3	human	genbank	58_37c	+1	validated	missense	c.1231	p.A411P	0.989	superfamily_EF-hand	PatternScan_EF_HAND_1,superfamily_EF-hand	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2627	2627	+	RNA	SNP	G	G	A	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	MT	2627	2627	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000219061	0	genome.wustl.edu	37	11	49854989	49854989	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	11	49854989	49854989	C	T	SNP	ENSG00000219061	ENST00000405176	human	ensembl	58_37c	-1	known	nonsense	c.1065	p.W355*	0.157	HMMPfam_SPRY	PatternScan_SERPIN,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
FLT4	0	genome.wustl.edu	37	5	180056385	180056385	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	5	180056385	180056385	T	C	SNP	FLT4	NM_182925.4	human	genbank	58_37c	-1	reviewed	missense	c.859	p.T287A	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin	-	no_errors
HPR	0	genome.wustl.edu	37	16	72107680	72107681	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	16	72107680	72107681	TG	-	DEL	HPR	ENST00000228226	human	ensembl	58_37c	+1	known	frame_shift_del	c.6_7	p.C6fs	0.035:0.032	NULL	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,superfamily_Complement control module/SCR domain	-	no_errors
HRNR	0	genome.wustl.edu	37	1	152186041	152186042	+	Frame_Shift_Ins	INS	-	-	GG	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	1	152186041	152186042	-	GG	INS	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	frame_shift_ins	c.8064_8063	p.L2688fs	0.000:0.000	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
IGHV3-53	0	genome.wustl.edu	37	14	107048690	107048690	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	14	107048690	107048690	G	A	SNP	IGHV3-53	ENST00000390627	human	ensembl	58_37c	-1	known	silent	c.330	p.A110	0.000	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon
LOC100287541	0	genome.wustl.edu	37	22	18842958	18842958	+	Missense_Mutation	SNP	G	G	T	rs146416647	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	22	18842958	18842958	G	T	SNP	LOC100287541	XM_002344189.1	human	genbank	58_37c	+1	model	missense	c.74	p.G25V	0.960	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
MARCO	0	genome.wustl.edu	37	2	119750834	119750834	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	2	119750834	119750834	C	A	SNP	MARCO	NM_006770.3	human	genbank	58_37c	+1	reviewed	missense	c.1387	p.L463M	1.000	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like	HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Collagen,HMMSmart_SM00202,superfamily_SRCR-like	-	no_errors
MAVS	0	genome.wustl.edu	37	20	3835301	3835301	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	20	3835301	3835301	G	A	SNP	MAVS	NM_020746.3	human	genbank	58_37c	+1	validated	silent	c.30	p.K10	0.286	NULL	NULL	-	no_errors
MED24	0	genome.wustl.edu	37	17	38189359	38189359	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	17	38189359	38189359	C	T	SNP	MED24	NM_014815.3	human	genbank	58_37c	-1	reviewed	missense	c.772	p.G258S	1.000	NULL	NULL	-	no_errors
MED24	0	genome.wustl.edu	37	17	38189431	38189431	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	17	38189431	38189431	C	G	SNP	MED24	NM_014815.3	human	genbank	58_37c	-1	reviewed	missense	c.700	p.E234Q	1.000	NULL	NULL	-	no_errors
MED24	0	genome.wustl.edu	37	17	38189690	38189690	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	17	38189690	38189690	C	G	SNP	MED24	NM_014815.3	human	genbank	58_37c	-1	reviewed	missense	c.579	p.E193D	0.980	NULL	NULL	-	no_errors
MIR548N	0	genome.wustl.edu	37	7	34980439	34980439	+	RNA	SNP	A	A	C	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	7	34980439	34980439	A	C	SNP	MIR548N	ENST00000408742	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors
MT-CYB	0	genome.wustl.edu	37	MT	15159	15159	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	MT	15159	15159	T	C	SNP	MT-CYB	ENST00000361789	human	ensembl	58_37c	+1	known	missense	c.413	p.M138T	NULL	HMMPfam_Cytochrom_B_N,superfamily_Transmembr_di-haem_cytochrome	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
MT-CYB	0	genome.wustl.edu	37	MT	15745	15745	+	Silent	SNP	C	T	T	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	MT	15745	15745	C	T	SNP	MT-CYB	ENST00000361789	human	ensembl	58_37c	+1	known	silent	c.999	p.L333	NULL	HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
MUC16	0	genome.wustl.edu	37	19	9038120	9038120	+	Silent	SNP	T	T	A	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	19	9038120	9038120	T	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	silent	c.36156	p.T12052	0.021	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195505801	195505801	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	3	195505801	195505801	G	A	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.12266	p.A4089V	0.000	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NBPF9	0	genome.wustl.edu	37	1	144823868	144823868	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	1	144823868	144823868	T	G	SNP	NBPF9	NM_001037675.2	human	genbank	58_37c	+1	predicted	missense	c.1164	p.C388W	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
NES	0	genome.wustl.edu	37	1	156639358	156639358	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	1	156639358	156639358	T	C	SNP	NES	NM_006617.1	human	genbank	58_37c	-1	reviewed	missense	c.4622	p.N1541S	0.263	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
NQO2	0	genome.wustl.edu	37	6	3019762	3019762	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	6	3019762	3019762	G	C	SNP	NQO2	NM_000904.3	human	genbank	58_37c	+1	validated	missense	c.569	p.S190T	0.918	HMMPfam_Flavodoxin_2,superfamily_Flavoproteins	HMMPfam_Flavodoxin_2,superfamily_Flavoproteins	-	no_errors
OTOF	0	genome.wustl.edu	37	2	26697524	26697524	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	2	26697524	26697524	C	T	SNP	OTOF	NM_194248.2	human	genbank	58_37c	-1	reviewed	missense	c.3145	p.G1049S	1.000	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI	-	no_errors
PIN1L	0	genome.wustl.edu	37	1	70385302	70385302	+	RNA	SNP	G	G	A	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	1	70385302	70385302	G	A	SNP	PIN1L	NR_023916.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.733	-	-	-	pseudogene
PIWIL3	0	genome.wustl.edu	37	22	25158416	25158416	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	22	25158416	25158416	C	T	SNP	PIWIL3	NM_001008496.2	human	genbank	58_37c	-1	validated	silent	c.51	p.E17	0.000	NULL	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_RNaseH_fold,superfamily_SSF101690	-	no_errors
POM121L1P	0	genome.wustl.edu	37	22	22977744	22977744	+	RNA	SNP	G	G	A	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	22	22977744	22977744	G	A	SNP	POM121L1P	NR_024591.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
PRDM1	0	genome.wustl.edu	37	6	106536124	106536124	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	6	106536124	106536124	G	A	SNP	PRDM1	NM_001198.3	human	genbank	58_37c	+1	reviewed	missense	c.91	p.E31K	0.998	NULL	HMMPfam_SET,HMMSmart_SET,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667,superfamily_SSF82199	-	no_errors
PRKCSH	0	genome.wustl.edu	37	19	11558341	11558343	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	19	11558341	11558343	GAG	-	DEL	PRKCSH	NM_002743.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.937_939	p.E316in_frame_del	0.997:0.999:0.994	NULL	PatternScan_ER_TARGET,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich,superfamily_Man6php_recept,HMMPfam_PRKCSH,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
RADIL	0	genome.wustl.edu	37	7	4917234	4917234	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	7	4917234	4917234	A	C	SNP	RADIL	NM_018059.4	human	genbank	58_37c	-1	validated	splice_site	c.535+2	e1+2	1.000	-	-	-	no_errors
RAP1GDS1	0	genome.wustl.edu	37	4	99355161	99355161	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	4	99355161	99355161	A	G	SNP	RAP1GDS1	NM_001100426.1	human	genbank	58_37c	+1	validated	missense	c.1518	p.I506M	1.000	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat	-	no_errors
SHISA9	0	genome.wustl.edu	37	16	13010598	13010598	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	16	13010598	13010598	A	G	SNP	SHISA9	NM_001145204.2	human	genbank	58_37c	+1	validated	missense	c.740	p.E247G	1.000	NULL	NULL	-	no_errors
SLC6A19	0	genome.wustl.edu	37	5	1216682	1216682	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	5	1216682	1216682	C	T	SNP	SLC6A19	ENST00000452116	human	ensembl	58_37c	+1	known	nonsense	c.805	p.R269*	0.955	NULL	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1	-	no_errors
SPHKAP	0	genome.wustl.edu	37	2	228884249	228884249	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	2	228884249	228884249	A	C	SNP	SPHKAP	NM_001142644.1	human	genbank	58_37c	-1	validated	missense	c.1321	p.S441A	0.080	NULL	HMMPfam_AKAP_110	-	no_errors
SYNGR1	0	genome.wustl.edu	37	22	39777822	39777823	+	In_Frame_Ins	INS	-	-	CAA	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	22	39777822	39777823	-	CAA	INS	SYNGR1	NM_004711.4	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.605_606	p.203in_frame_insN	0.999:0.002	NULL	HMMPfam_MARVEL,PatternScan_TONB_DEPENDENT_REC_1	-	no_errors
TANK	0	genome.wustl.edu	37	2	162087536	162087536	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	2	162087536	162087536	C	T	SNP	TANK	NM_004180.2	human	genbank	58_37c	+1	reviewed	missense	c.575	p.A192V	0.131	NULL	NULL	-	no_errors
TIMM50	0	genome.wustl.edu	37	19	39980425	39980425	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	19	39980425	39980425	A	C	SNP	TIMM50	NM_001001563.1	human	genbank	58_37c	+1	validated	missense	c.1336	p.T446P	0.997	NULL	HMMPfam_NIF,HMMSmart_CPDc,superfamily_SSF56784	-	no_errors
TRIL	0	genome.wustl.edu	37	7	28997596	28997597	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	7	28997596	28997597	-	C	INS	TRIL	NM_014817.3	human	genbank	58_37c	-1	validated	frame_shift_ins	c.67_66	p.P22fs	0.011:0.009	NULL	HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	-	pseudogene
USP32	0	genome.wustl.edu	37	17	58288421	58288421	+	Missense_Mutation	SNP	C	C	T	rs146577219	byFrequency	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	17	58288421	58288421	C	T	SNP	USP32	NM_032582.3	human	genbank	58_37c	-1	validated	missense	c.2377	p.E793K	1.000	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,HMMSmart_EFh,HMMSmart_DUSP,HMMPfam_DUF1055,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473,superfamily_SSF54001	-	no_errors
VAV1	0	genome.wustl.edu	37	19	6850694	6850694	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	19	6850694	6850694	G	A	SNP	VAV1	NM_005428.2	human	genbank	58_37c	+1	reviewed	missense	c.2143	p.V715I	1.000	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_SH2,HMMSmart_SH2,PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_CH,HMMSmart_CH,HMMPfam_PH,HMMSmart_PH,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_Calponin-homology,superfamily_SSF50729,superfamily_SSF55550,superfamily_SSF57889	-	no_errors
VPS13B	0	genome.wustl.edu	37	8	100789055	100789055	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	8	100789055	100789055	A	G	SNP	VPS13B	NM_017890.3	human	genbank	58_37c	+1	reviewed	missense	c.7375	p.T2459A	1.000	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
ZFR	0	genome.wustl.edu	37	5	32364331	32364331	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	5	32364331	32364331	C	T	SNP	ZFR	NM_016107.3	human	genbank	58_37c	-1	validated	silent	c.2886	p.Q962	1.000	HMMPfam_DZF,HMMSmart_DZF	HMMSmart_ZnF_U1,HMMPfam_DZF,HMMSmart_DZF,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZPBP2	0	genome.wustl.edu	37	17	38031506	38031506	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	17	38031506	38031506	G	A	SNP	ZPBP2	NM_199321.2	human	genbank	58_37c	+1	validated	splice_site	c.709-1	e7-1	1.000	-	-	-	no_errors
