Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	filter
KLHL21	9903	broad.mit.edu	37	1	6659137	6659137	+	Missense_Mutation	SNP	G	A	A			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr1:6659137G>A	uc001aoa.2	-	2	1449	c.1397C>T	c.(1396-1398)GCG>GTG	p.A466V	KLHL21_uc001anz.1_Missense_Mutation_p.A466V|KLHL21_uc009vme.2_Missense_Mutation_p.A99V	NM_014851	NP_055666	Q9UJP4	KLH21_HUMAN	kelch-like 21	466	Kelch 4.				anaphase|cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex|cytoplasm|polar microtubule				central_nervous_system(1)	1	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;7.39e-28)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;1.36e-07)|COAD - Colon adenocarcinoma(227;1.4e-05)|Kidney(185;4.95e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000528)|KIRC - Kidney renal clear cell carcinoma(229;0.000927)|STAD - Stomach adenocarcinoma(132;0.0172)|READ - Rectum adenocarcinoma(331;0.0644)		GTTTAGAGTCGCAGTCTTGGG	0.592													3	21	---	---	---	---	PASS
USP48	84196	broad.mit.edu	37	1	22056252	22056252	+	Missense_Mutation	SNP	C	A	A			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr1:22056252C>A	uc001bfb.2	-	10	1483	c.1245G>T	c.(1243-1245)ATG>ATT	p.M415I	USP48_uc010odq.1_Missense_Mutation_p.M414I|USP48_uc009vqc.2_Missense_Mutation_p.M415I|USP48_uc001bfc.2_Missense_Mutation_p.M415I|USP48_uc001bfe.1_Missense_Mutation_p.M414I|USP48_uc001bff.2_Missense_Mutation_p.M415I	NM_032236	NP_115612	Q86UV5	UBP48_HUMAN	ubiquitin specific protease 48 isoform a	415					ubiquitin-dependent protein catabolic process	mitochondrion|nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)	2		Colorectal(325;3.46e-05)|all_lung(284;4.29e-05)|Lung NSC(340;4.66e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|OV - Ovarian serous cystadenocarcinoma(117;4.74e-26)|COAD - Colon adenocarcinoma(152;1.3e-05)|GBM - Glioblastoma multiforme(114;1.86e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000614)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00711)|Lung(427;0.0327)|READ - Rectum adenocarcinoma(331;0.0657)|LUSC - Lung squamous cell carcinoma(448;0.0753)		TATAAACCAACATATATGCAT	0.398													11	304	---	---	---	---	PASS
PLK3	1263	broad.mit.edu	37	1	45269352	45269352	+	Missense_Mutation	SNP	G	T	T			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr1:45269352G>T	uc001cmn.2	+	9	1253	c.1153G>T	c.(1153-1155)GCC>TCC	p.A385S	PLK3_uc001cmo.2_RNA	NM_004073	NP_004064	Q9H4B4	PLK3_HUMAN	polo-like kinase 3	385						membrane	ATP binding|protein binding|protein serine/threonine kinase activity				0	Acute lymphoblastic leukemia(166;0.155)					CCATCAGGATGCCAGGCCAGA	0.597													7	38	---	---	---	---	PASS
CC2D1B	200014	broad.mit.edu	37	1	52819213	52819213	+	Missense_Mutation	SNP	A	C	C			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr1:52819213A>C	uc001ctq.1	-	24	2693	c.2555T>G	c.(2554-2556)GTT>GGT	p.V852G	CC2D1B_uc001ctr.2_Missense_Mutation_p.V392G|CC2D1B_uc001cts.2_Intron	NM_032449	NP_115825	Q5T0F9	C2D1B_HUMAN	coiled-coil and C2 domain containing 1B	852										ovary(2)	2						GGGCTCCAGAACCAGCCAGTT	0.582													6	18	---	---	---	---	PASS
BRDT	676	broad.mit.edu	37	1	92446630	92446630	+	Missense_Mutation	SNP	C	T	T			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr1:92446630C>T	uc001dok.3	+	10	1994	c.1645C>T	c.(1645-1647)CCT>TCT	p.P549S	BRDT_uc001dol.3_Missense_Mutation_p.P549S|BRDT_uc010osz.1_Missense_Mutation_p.P553S|BRDT_uc009wdf.2_Missense_Mutation_p.P476S|BRDT_uc010ota.1_Missense_Mutation_p.P503S|BRDT_uc010otb.1_Missense_Mutation_p.P503S|BRDT_uc001dom.3_Missense_Mutation_p.P549S	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	549					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		CAATTCCAATCCTGATGAGAT	0.368													5	141	---	---	---	---	PASS
ASTN1	460	broad.mit.edu	37	1	176853612	176853612	+	Missense_Mutation	SNP	G	A	A	rs143440206	byFrequency	TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr1:176853612G>A	uc001glc.2	-	19	3301	c.3089C>T	c.(3088-3090)ACG>ATG	p.T1030M	ASTN1_uc001glb.1_Missense_Mutation_p.T1030M|ASTN1_uc001gld.1_Missense_Mutation_p.T1030M	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1038	Fibronectin type-III 1.				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CTCGTGAACCGTGGAGAGTCT	0.517													22	119	---	---	---	---	PASS
PLA2G4A	5321	broad.mit.edu	37	1	186915809	186915809	+	Silent	SNP	A	G	G			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr1:186915809A>G	uc001gsc.2	+	11	1279	c.1074A>G	c.(1072-1074)AAA>AAG	p.K358K	PLA2G4A_uc010pos.1_Silent_p.K298K	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	358	PLA2c.				phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	GCATGGCTAAATATGGTACTT	0.358													23	121	---	---	---	---	PASS
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48818948	48818948	+	Missense_Mutation	SNP	T	C	C			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr2:48818948T>C	uc010yol.1	+	2	2134	c.2087T>C	c.(2086-2088)GTC>GCC	p.V696A	STON1_uc002rwo.3_Missense_Mutation_p.V696A|STON1_uc010fbm.2_Missense_Mutation_p.V696A|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.V696A|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.V696A	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	696					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			GAGAGTGATGTCCAGCCACAG	0.463													8	67	---	---	---	---	PASS
XIRP2	129446	broad.mit.edu	37	2	168105389	168105389	+	Missense_Mutation	SNP	C	T	T			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr2:168105389C>T	uc002udx.2	+	8	7505	c.7487C>T	c.(7486-7488)TCT>TTT	p.S2496F	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.S2321F|XIRP2_uc010fpq.2_Missense_Mutation_p.S2274F|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2321					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TCTATTGACTCTGCAAACTGT	0.398													9	172	---	---	---	---	PASS
HYAL3	8372	broad.mit.edu	37	3	50332156	50332156	+	Missense_Mutation	SNP	C	A	A			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr3:50332156C>A	uc003czd.1	-	2	1151	c.878G>T	c.(877-879)GGG>GTG	p.G293V	HYAL3_uc003czc.1_Missense_Mutation_p.G293V|HYAL3_uc003cze.1_Missense_Mutation_p.G44V|HYAL3_uc003czf.1_Missense_Mutation_p.G44V|HYAL3_uc003czg.1_Missense_Mutation_p.G293V	NM_003549	NP_003540	O43820	HYAL3_HUMAN	hyaluronoglucosaminidase 3 precursor	293					carbohydrate metabolic process	extracellular region|lysosome	hyalurononglucosaminidase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		CAGGAACCTCCCAGATCTCCG	0.612													27	119	---	---	---	---	PASS
ANK2	287	broad.mit.edu	37	4	114161711	114161711	+	Missense_Mutation	SNP	G	A	A			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr4:114161711G>A	uc003ibe.3	+	8	864	c.764G>A	c.(763-765)CGG>CAG	p.R255Q	ANK2_uc003ibd.3_Missense_Mutation_p.R234Q|ANK2_uc003ibf.3_Missense_Mutation_p.R255Q|ANK2_uc003ibc.2_Missense_Mutation_p.R231Q|ANK2_uc011cgb.1_Missense_Mutation_p.R270Q	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	255	ANK 7.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CTTCTAAACCGGGGAGCTGCT	0.393													30	175	---	---	---	---	PASS
FAT4	79633	broad.mit.edu	37	4	126370709	126370709	+	Silent	SNP	C	T	T	rs139132509	byFrequency	TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr4:126370709C>T	uc003ifj.3	+	9	8538	c.8538C>T	c.(8536-8538)TCC>TCT	p.S2846S	FAT4_uc011cgp.1_Silent_p.S1144S|FAT4_uc003ifi.1_Silent_p.S324S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2846	Cadherin 27.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TTCGAGTTTCCGCACATGATT	0.388													39	203	---	---	---	---	PASS
ADRB2	154	broad.mit.edu	37	5	148206406	148206406	+	Silent	SNP	C	T	T			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr5:148206406C>T	uc003lpr.1	+	1	251	c.12C>T	c.(10-12)CCC>CCT	p.P4P	SH3TC2_uc003lpp.1_Intron	NM_000024	NP_000015	P07550	ADRB2_HUMAN	adrenergic, beta-2-, receptor, surface	4	Extracellular.				activation of transmembrane receptor protein tyrosine kinase activity|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|endosome to lysosome transport|positive regulation of MAPKKK cascade|receptor-mediated endocytosis	endosome|integral to plasma membrane|lysosome|receptor complex	beta2-adrenergic receptor activity|norepinephrine binding|potassium channel regulator activity|protein homodimerization activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Alprenolol(DB00866)|Arformoterol(DB01274)|Bambuterol(DB01408)|Bisoprolol(DB00612)|Bitolterol(DB00901)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Clenbuterol(DB01407)|Desipramine(DB01151)|Epinephrine(DB00668)|Fenoterol(DB01288)|Formoterol(DB00983)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Nadolol(DB01203)|Norepinephrine(DB00368)|Orciprenaline(DB00816)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Pirbuterol(DB01291)|Procaterol(DB01366)|Propranolol(DB00571)|Pseudoephedrine(DB00852)|Ritodrine(DB00867)|Salbutamol(DB01001)|Salmeterol(DB00938)|Terbutaline(DB00871)|Timolol(DB00373)	TGGGGCAACCCGGGAACGGCA	0.726													7	88	---	---	---	---	PASS
APOBEC2	10930	broad.mit.edu	37	6	41029415	41029415	+	Silent	SNP	G	A	A	rs140342245	by1000genomes	TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr6:41029415G>A	uc003opl.2	+	2	627	c.480G>A	c.(478-480)CCG>CCA	p.P160P	UNC5CL_uc010jxe.1_Intron|APOBEC2_uc010jxf.2_RNA	NM_006789	NP_006780	Q9Y235	ABEC2_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	160					DNA demethylation|mRNA processing		cytidine deaminase activity|RNA binding|zinc ion binding				0	Ovarian(28;0.0418)|Colorectal(47;0.196)					GGGAGGAGCCGGAGATCCAGG	0.537													34	143	---	---	---	---	PASS
ZNF292	23036	broad.mit.edu	37	6	87969899	87969899	+	Silent	SNP	A	G	G			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr6:87969899A>G	uc003plm.3	+	8	6593	c.6552A>G	c.(6550-6552)CAA>CAG	p.Q2184Q		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	2184	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		GAATTTTCCAAGCAATTACTG	0.363													8	449	---	---	---	---	PASS
PLEKHG1	57480	broad.mit.edu	37	6	151161999	151161999	+	Missense_Mutation	SNP	A	C	C			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr6:151161999A>C	uc003qny.1	+	17	4437	c.4125A>C	c.(4123-4125)AAA>AAC	p.K1375N	PLEKHG1_uc011eem.1_Missense_Mutation_p.K1434N	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	1375					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		TAAGGGAAAAATTTCAGTGTC	0.363													28	195	---	---	---	---	PASS
C7orf28B	221960	broad.mit.edu	37	7	6865862	6865862	+	Splice_Site	SNP	G	C	C	rs141173433	by1000genomes	TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr7:6865862G>C	uc003sqx.1	-	1	1	c.-32_splice	c.e1-1		C7orf28B_uc011jxd.1_Splice_Site|C7orf28B_uc003sqy.1_Splice_Site	NM_198097	NP_932765	P86791	CCZ1_HUMAN	hypothetical protein LOC221960							lysosomal membrane					0		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)		AGCCTCCCACGGCCCGCCCAG	0.582													3	6	---	---	---	---	PASS
LOC729156	729156	broad.mit.edu	37	7	66296183	66296183	+	RNA	SNP	G	A	A			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr7:66296183G>A	uc003tvj.1	-	7		c.684C>T				NR_003934				Homo sapiens cDNA FLJ36054 fis, clone TESTI2018290.												0						CATTTCTTACGTGTCAGCATC	0.567													6	39	---	---	---	---	PASS
LAT2	7462	broad.mit.edu	37	7	73630358	73630358	+	Missense_Mutation	SNP	T	G	G			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr7:73630358T>G	uc003uag.2	+	3	603	c.53T>G	c.(52-54)TTG>TGG	p.L18W	RFC2_uc011kfa.1_Intron|LAT2_uc003uah.2_Missense_Mutation_p.L18W|LAT2_uc003uai.2_Missense_Mutation_p.L18W|LAT2_uc010lbo.2_RNA	NM_032464	NP_115853	Q9GZY6	NTAL_HUMAN	linker for activation of T cells family member	18	Helical; Signal-anchor for type III membrane protein; (Potential).				B cell activation|B cell receptor signaling pathway|calcium-mediated signaling|mast cell degranulation	integral to membrane|intracellular|membrane raft|plasma membrane	SH2 domain binding				0						CTGGTGCTGTTGGGGGTGGCA	0.637													6	43	---	---	---	---	PASS
ABCB4	5244	broad.mit.edu	37	7	87104731	87104731	+	Silent	SNP	C	T	T			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr7:87104731C>T	uc003uiv.1	-	2	127	c.51G>A	c.(49-51)GCG>GCA	p.A17A	ABCB4_uc003uiw.1_Silent_p.A17A|ABCB4_uc003uix.1_Silent_p.A17A|ABCB4_uc003uiy.2_Silent_p.A17A	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	17	Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					AGTCGCCCTCCGCGCTCGTGG	0.577													13	93	---	---	---	---	PASS
FAM154A	158297	broad.mit.edu	37	9	18928742	18928742	+	Missense_Mutation	SNP	G	A	A			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr9:18928742G>A	uc003zni.1	-	4	1011	c.733C>T	c.(733-735)CGG>TGG	p.R245W	FAM154A_uc010mip.1_Missense_Mutation_p.R53W	NM_153707	NP_714918	Q8IYX7	F154A_HUMAN	hypothetical protein LOC158297	245										pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.53e-16)		ATCAGGCCCCGGTAGGATTGT	0.532													21	92	---	---	---	---	PASS
ZNF462	58499	broad.mit.edu	37	9	109746677	109746677	+	Missense_Mutation	SNP	G	C	C			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr9:109746677G>C	uc004bcz.2	+	10	7332	c.7043G>C	c.(7042-7044)CGG>CCG	p.R2348P	ZNF462_uc010mto.2_Missense_Mutation_p.R2257P|ZNF462_uc004bda.2_Missense_Mutation_p.R2256P|ZNF462_uc011lvz.1_Missense_Mutation_p.R305P|uc004bdc.1_Intron	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	2348	C2H2-type 26.				transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						AGCCACCTTCGGGATGAGCAT	0.527													20	104	---	---	---	---	PASS
KCNMA1	3778	broad.mit.edu	37	10	78647070	78647070	+	Missense_Mutation	SNP	C	A	A			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr10:78647070C>A	uc001jxn.2	-	28	3842	c.3665G>T	c.(3664-3666)AGG>ATG	p.R1222M	KCNMA1_uc001jxj.2_Missense_Mutation_p.R1168M|KCNMA1_uc001jxk.1_Missense_Mutation_p.R840M|KCNMA1_uc009xrt.1_Missense_Mutation_p.R1013M|KCNMA1_uc001jxl.1_Missense_Mutation_p.R847M|KCNMA1_uc001jxo.2_Missense_Mutation_p.R1205M|KCNMA1_uc001jxm.2_Missense_Mutation_p.R1164M|KCNMA1_uc001jxq.2_Missense_Mutation_p.R1194M|uc001jxp.2_5'Flank	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	1222	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	CCGGGACTCCCTGGACTTGGG	0.552													13	327	---	---	---	---	PASS
CSNK2A1P	283106	broad.mit.edu	37	11	11373509	11373509	+	Silent	SNP	G	A	A			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr11:11373509G>A	uc001mjp.2	-	1	1396	c.1158C>T	c.(1156-1158)GCC>GCT	p.A386A	GALNTL4_uc001mjo.2_Intron	NM_177559	NP_808227			casein kinase II alpha 1 subunit isoform a												0						GAGCGCCAGTGGCAGCTGGAA	0.622													7	12	---	---	---	---	PASS
OR4A16	81327	broad.mit.edu	37	11	55110845	55110845	+	Missense_Mutation	SNP	A	G	G			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr11:55110845A>G	uc010rie.1	+	1	169	c.169A>G	c.(169-171)ATG>GTG	p.M57V		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						GGGCTCCCTAATGTACTTCTT	0.408													9	257	---	---	---	---	PASS
FOLR3	2352	broad.mit.edu	37	11	71850178	71850178	+	Silent	SNP	G	T	T			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr11:71850178G>T	uc001ory.1	+	3	518	c.468G>T	c.(466-468)GGG>GGT	p.G156G	FOLR3_uc001orx.1_Silent_p.G114G			P41439	FOLR3_HUMAN	SubName: Full=FOLR3 protein; Flags: Fragment;	112					folic acid transport	extracellular region|extrinsic to membrane|membrane fraction	folic acid binding|receptor activity				0					Folic Acid(DB00158)	CCAACCTGGGGCCCTGGATCC	0.562													6	48	---	---	---	---	PASS
FKBP4	2288	broad.mit.edu	37	12	2912357	2912357	+	Missense_Mutation	SNP	C	G	G			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr12:2912357C>G	uc001qkz.2	+	10	1511	c.1313C>G	c.(1312-1314)ACA>AGA	p.T438R		NM_002014	NP_002005	Q02790	FKBP4_HUMAN	FK506 binding protein 52	438					negative regulation of microtubule polymerization or depolymerization|negative regulation of neuron projection development|protein folding	axonal growth cone|cytosol|membrane|microtubule|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity|protein binding, bridging				0			OV - Ovarian serous cystadenocarcinoma(31;0.00105)		Dimethyl sulfoxide(DB01093)	CCCACTGACACAGAGATGAAG	0.557													2	14	---	---	---	---	PASS
Unknown	0	broad.mit.edu	37	12	9713413	9713413	+	RNA	SNP	A	G	G			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr12:9713413A>G	uc001qwb.1	+	5		c.608A>G								Homo sapiens mRNA; cDNA DKFZp686A1124 (from clone DKFZp686A1124).																		TGTATTACAGACTCAGTGCTC	0.358													3	8	---	---	---	---	PASS
DNM1L	10059	broad.mit.edu	37	12	32871615	32871615	+	Missense_Mutation	SNP	A	G	G			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr12:32871615A>G	uc001rld.2	+	7	819	c.658A>G	c.(658-660)ATG>GTG	p.M220V	DNM1L_uc010skf.1_RNA|DNM1L_uc010skg.1_Intron|DNM1L_uc001rle.2_Missense_Mutation_p.M220V|DNM1L_uc001rlf.2_Missense_Mutation_p.M220V|DNM1L_uc010skh.1_Missense_Mutation_p.M286V|DNM1L_uc001rlg.2_Missense_Mutation_p.M286V|DNM1L_uc001rlh.2_Missense_Mutation_p.M273V|DNM1L_uc010ski.1_Intron	NM_012062	NP_036192	O00429	DNM1L_HUMAN	dynamin 1-like isoform 1	220	GTPase domain.				cellular component disassembly involved in apoptosis|mitochondrial fragmentation involved in apoptosis|mitochondrial membrane organization|positive regulation of mitochondrial fission	cis-Golgi network|cytosol|endomembrane system|endoplasmic reticulum|mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2	Lung NSC(5;2.15e-06)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					ACTTGATCTCATGGATGCGGG	0.388													14	312	---	---	---	---	PASS
DIS3	22894	broad.mit.edu	37	13	73337740	73337740	+	Missense_Mutation	SNP	G	T	T			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr13:73337740G>T	uc001vix.3	-	16	2350	c.1976C>A	c.(1975-1977)ACA>AAA	p.T659K	DIS3_uc001viy.3_Missense_Mutation_p.T629K|DIS3_uc001viz.2_RNA	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a	659					CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding			central_nervous_system(1)	1		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)		CATGGAATTTGTTTCCCTGCC	0.318										Multiple Myeloma(4;0.011)			8	46	---	---	---	---	PASS
UGGT2	55757	broad.mit.edu	37	13	96579562	96579562	+	Missense_Mutation	SNP	A	G	G			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr13:96579562A>G	uc001vmt.2	-	18	2176	c.2006T>C	c.(2005-2007)ATT>ACT	p.I669T		NM_020121	NP_064506	Q9NYU1	UGGG2_HUMAN	UDP-glucose ceramide glucosyltransferase-like 2	669					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity			ovary(2)|central_nervous_system(1)	3						TAGAAAATCAATTGCATTCGT	0.303													6	154	---	---	---	---	PASS
RALGAPA1	253959	broad.mit.edu	37	14	36039876	36039876	+	Silent	SNP	T	G	G			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr14:36039876T>G	uc001wti.2	-	38	6316	c.5925A>C	c.(5923-5925)ACA>ACC	p.T1975T	RALGAPA1_uc010amp.2_RNA|RALGAPA1_uc001wtj.2_Silent_p.T1975T|RALGAPA1_uc010tpv.1_Silent_p.T1988T|RALGAPA1_uc010tpw.1_Silent_p.T2022T	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	1975	Minimal domain that binds to TCF3/E12 (By similarity).|Rap-GAP.				activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity	p.T1975R(1)		ovary(3)|breast(1)	4						CATTTATAGCTGTTGCTCTAA	0.363													4	66	---	---	---	---	PASS
C14orf149	112849	broad.mit.edu	37	14	59942813	59942813	+	Missense_Mutation	SNP	T	G	G			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr14:59942813T>G	uc001xee.1	-	3	837	c.798A>C	c.(796-798)GAA>GAC	p.E266D		NM_144581	NP_653182	Q96EM0	PRCM_HUMAN	proline racemase-like	266							proline racemase activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.14)	L-Proline(DB00172)	TTAATACCTGTTCATCTGCAA	0.348													8	362	---	---	---	---	PASS
GOLGA8DP	100132979	broad.mit.edu	37	15	22709152	22709152	+	Missense_Mutation	SNP	G	T	T			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr15:22709152G>T	uc010axw.2	-	11	1245	c.347C>A	c.(346-348)GCG>GAG	p.A116E	GOLGA8DP_uc010axx.2_Missense_Mutation_p.A116E|uc010tzw.1_5'Flank	NM_001012423	NP_001012423			golgi autoantigen, golgin subfamily a, 8E												0						GGCCTGGAGCGCTCCTGCCAC	0.607													4	91	---	---	---	---	PASS
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42133437	42133437	+	Missense_Mutation	SNP	G	A	A			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr15:42133437G>A	uc010bco.2	+	6	502	c.401G>A	c.(400-402)CGT>CAT	p.R134H	JMJD7-PLA2G4B_uc001zoo.3_Missense_Mutation_p.R365H|JMJD7-PLA2G4B_uc010bcn.2_Missense_Mutation_p.R365H|JMJD7-PLA2G4B_uc001zoq.3_Translation_Start_Site|JMJD7-PLA2G4B_uc001zor.1_5'Flank	NM_001114633	NP_001108105	P0C869	PA24B_HUMAN	phospholipase A2, group IVB	134					arachidonic acid metabolic process|calcium-mediated signaling|glycerophospholipid catabolic process|inflammatory response|parturition	cytosol|early endosome membrane|extracellular region|mitochondrial membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|calcium-dependent phospholipid binding|lysophospholipase activity			large_intestine(1)	1						AGGGCTGACCGTGGCGAGTGG	0.652													25	197	---	---	---	---	PASS
WDR72	256764	broad.mit.edu	37	15	54006701	54006701	+	Missense_Mutation	SNP	G	T	T			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr15:54006701G>T	uc002acj.2	-	6	563	c.521C>A	c.(520-522)TCT>TAT	p.S174Y	WDR72_uc010bfi.1_Missense_Mutation_p.S174Y	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	174	WD 3.									lung(1)|skin(1)	2				all cancers(107;0.0511)		CACCAAGAGAGAATCTTCTGT	0.383													14	119	---	---	---	---	PASS
AQP9	366	broad.mit.edu	37	15	58465386	58465386	+	Missense_Mutation	SNP	G	A	A	rs143617963	by1000genomes	TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr15:58465386G>A	uc002aez.2	+	3	715	c.358G>A	c.(358-360)GTC>ATC	p.V120I	ALDH1A2_uc010ugw.1_Intron|AQP9_uc010ugx.1_Missense_Mutation_p.V55I	NM_020980	NP_066190	O43315	AQP9_HUMAN	aquaporin 9	120	Helical; (Potential).				cellular response to cAMP|excretion|immune response|metabolic process|response to mercury ion|response to osmotic stress|water homeostasis	integral to plasma membrane|intracellular membrane-bounded organelle	amine transmembrane transporter activity|carboxylic acid transmembrane transporter activity|glycerol channel activity|porin activity|purine base transmembrane transporter activity|pyrimidine base transmembrane transporter activity|water channel activity			ovary(1)	1				GBM - Glioblastoma multiforme(80;0.16)		GGCTGCAACCGTCTTTGGCAT	0.463													8	346	---	---	---	---	PASS
ISLR2	57611	broad.mit.edu	37	15	74426317	74426317	+	Missense_Mutation	SNP	G	A	A			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr15:74426317G>A	uc002axd.2	+	4	1991	c.1222G>A	c.(1222-1224)GTC>ATC	p.V408I	ISLR2_uc002axe.2_Missense_Mutation_p.V408I|ISLR2_uc010bjg.2_Missense_Mutation_p.V408I|ISLR2_uc010bjf.2_Missense_Mutation_p.V408I	NM_001130136	NP_001123608	Q6UXK2	ISLR2_HUMAN	immunoglobulin superfamily containing	408	Extracellular (Potential).				positive regulation of axon extension	cell surface|integral to membrane|plasma membrane					0						GGGCAACAGCGTCCTGCCTTC	0.662													3	19	---	---	---	---	PASS
GOLGA6L10	647042	broad.mit.edu	37	15	82635098	82635098	+	RNA	SNP	G	T	T			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr15:82635098G>T	uc002bgx.2	-	5		c.482C>A						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						TAAATGTTTTGTTTTTTTTTT	0.318													4	19	---	---	---	---	PASS
SDF2	6388	broad.mit.edu	37	17	26982405	26982405	+	Missense_Mutation	SNP	C	T	T			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr17:26982405C>T	uc002hbw.2	-	2	287	c.248G>A	c.(247-249)GGA>GAA	p.G83E	SDF2_uc002hbx.2_RNA	NM_006923	NP_008854	Q99470	SDF2_HUMAN	stromal cell-derived factor 2 precursor	83	MIR 2.				protein glycosylation	extracellular space|membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity				0	Lung NSC(42;0.00431)					GATGGGGGTTCCCCTCTCACA	0.552													8	189	---	---	---	---	PASS
KRT14	3861	broad.mit.edu	37	17	39742898	39742898	+	Silent	SNP	G	A	A	rs11551758	byFrequency	TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr17:39742898G>A	uc002hxf.1	-	1	250	c.189C>T	c.(187-189)TAC>TAT	p.Y63Y	JUP_uc010wfs.1_Intron|KRT14_uc010cxp.1_Silent_p.C63C	NM_000526	NP_000517	P02533	K1C14_HUMAN	keratin 14	63	Head.				epidermis development|hemidesmosome assembly|intermediate filament bundle assembly	cytosol|keratin filament|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(1)	1		Breast(137;0.000307)				CCCCCAGCCCGCAGGCTCCCC	0.527													2	2	---	---	---	---	PASS
POTEC	388468	broad.mit.edu	37	18	14513764	14513764	+	Missense_Mutation	SNP	C	T	T			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr18:14513764C>T	uc010dln.2	-	10	1884	c.1430G>A	c.(1429-1431)CGG>CAG	p.R477Q	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	477										skin(3)	3						AAGTTGTTTCCGGGTATCATT	0.358													5	109	---	---	---	---	PASS
ESCO1	114799	broad.mit.edu	37	18	19154390	19154390	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr18:19154390T>A	uc002kth.1	-	4	1349	c.415A>T	c.(415-417)AGA>TGA	p.R139*	ESCO1_uc002kti.1_RNA	NM_052911	NP_443143	Q5FWF5	ESCO1_HUMAN	establishment of cohesion 1 homolog 1	139					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding				0						TGAATTTCTCTACTGCGTAAC	0.373													14	860	---	---	---	---	PASS
ADNP2	22850	broad.mit.edu	37	18	77895268	77895268	+	Missense_Mutation	SNP	G	A	A			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr18:77895268G>A	uc002lnw.2	+	4	2427	c.1972G>A	c.(1972-1974)GGC>AGC	p.G658S		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	658					cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		TTCCATGCCCGGCATGCCCTC	0.632													3	69	---	---	---	---	PASS
FBN3	84467	broad.mit.edu	37	19	8176568	8176568	+	Missense_Mutation	SNP	G	A	A	rs149551378	byFrequency	TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr19:8176568G>A	uc002mjf.2	-	31	4069	c.4048C>T	c.(4048-4050)CGC>TGC	p.R1350C		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1350	EGF-like 20; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent	p.R1350H(1)		ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						AAGCCCTGGCGGCAGGTGCAG	0.632													12	43	---	---	---	---	PASS
ZNF845	91664	broad.mit.edu	37	19	53855284	53855284	+	Silent	SNP	G	A	A			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr19:53855284G>A	uc010ydv.1	+	4	1473	c.1356G>A	c.(1354-1356)TCG>TCA	p.S452S	ZNF845_uc010ydw.1_Silent_p.S452S	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	452	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTTTCAAATCGAACCTTGAAA	0.398													5	164	---	---	---	---	PASS
LILRB5	10990	broad.mit.edu	37	19	54754760	54754760	+	Missense_Mutation	SNP	C	T	T	rs112549096	byFrequency	TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr19:54754760C>T	uc002qex.2	-	13	1774	c.1663G>A	c.(1663-1665)GCC>ACC	p.A555T	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_3'UTR|LILRB5_uc002qey.2_Missense_Mutation_p.A556T|LILRB5_uc002qez.2_Missense_Mutation_p.A456T|LILRB5_uc002qfa.1_3'UTR	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	555	ITIM motif 1.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TGTAGCTGGGCGTAGGTCACA	0.652													8	73	---	---	---	---	PASS
N6AMT1	29104	broad.mit.edu	37	21	30255333	30255333	+	Silent	SNP	A	G	G			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr21:30255333A>G	uc002ymo.1	-	2	221	c.195T>C	c.(193-195)TCT>TCC	p.S65S	N6AMT1_uc002ymp.1_Silent_p.S65S|N6AMT1_uc002ymq.1_RNA	NM_013240	NP_037372	Q9Y5N5	HEMK2_HUMAN	N-6 adenine-specific DNA methyltransferase 1	65					positive regulation of cell growth	protein complex	nucleic acid binding|protein binding|protein methyltransferase activity				0						GGCCTATCATAGAGGCTAGGA	0.333													24	125	---	---	---	---	PASS
PIGA	5277	broad.mit.edu	37	X	15342939	15342939	+	Missense_Mutation	SNP	T	C	C			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chrX:15342939T>C	uc004cwr.2	-	5	1136	c.1036A>G	c.(1036-1038)ATT>GTT	p.I346V	PIGA_uc010neu.2_Intron|PIGA_uc004cwq.2_Missense_Mutation_p.I31V|PIGA_uc010nev.2_Missense_Mutation_p.I177V|PIGA_uc004cws.2_Missense_Mutation_p.I31V|PIGA_uc011miq.1_Missense_Mutation_p.I112V	NM_002641	NP_002632	P37287	PIGA_HUMAN	phosphatidylinositol	346	Cytoplasmic (Potential).				C-terminal protein lipidation|positive regulation of metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity|protein binding				0	Hepatocellular(33;0.183)					TCACATAAAATAATAAGGTTT	0.383													5	118	---	---	---	---	PASS
ATRX	546	broad.mit.edu	37	X	76940433	76940433	+	Missense_Mutation	SNP	A	C	C			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chrX:76940433A>C	uc004ecp.3	-	8	892	c.660T>G	c.(658-660)TGT>TGG	p.C220W	ATRX_uc004ecq.3_Missense_Mutation_p.C182W|ATRX_uc004eco.3_Missense_Mutation_p.C5W|ATRX_uc004ecr.2_Missense_Mutation_p.C181W|ATRX_uc010nlx.1_Missense_Mutation_p.C220W|ATRX_uc010nly.1_Missense_Mutation_p.C165W	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	220	ADD.|PHD-type; atypical.		C -> R (in ATRX).|C -> Y (in MRXSHF1).		DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTACCTACCTACATTGTTCAT	0.323			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						4	134	---	---	---	---	PASS
HTATSF1	27336	broad.mit.edu	37	X	135593930	135593930	+	Missense_Mutation	SNP	T	G	G			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chrX:135593930T>G	uc004ezw.2	+	10	2448	c.2026T>G	c.(2026-2028)TCA>GCA	p.S676A	HTATSF1_uc004ezx.2_Missense_Mutation_p.S676A	NM_001163280	NP_001156752	O43719	HTSF1_HUMAN	HIV-1 Tat specific factor 1	676	Asp/Glu-rich (acidic).|Mediates interaction with the P-TEFb complex.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|viral genome replication	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GTTTGAAGAGTCAGATGACAA	0.403													6	66	---	---	---	---	PASS
DISP1	84976	broad.mit.edu	37	1	223178140	223178162	+	Frame_Shift_Del	DEL	TTGGACCACAGGGTACCTGTGGT	-	-			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr1:223178140_223178162delTTGGACCACAGGGTACCTGTGGT	uc001hnu.1	+	8	3548_3570	c.3401_3423delTTGGACCACAGGGTACCTGTGGT	c.(3400-3423)CTTGGACCACAGGGTACCTGTGGTfs	p.L1134fs		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	1134_1141					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TGCCGGTGCCTTGGACCACAGGGTACCTGTGGTCAGATTCCTT	0.480													186	8	---	---	---	---	
MSTN	2660	broad.mit.edu	37	2	190925125	190925125	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr2:190925125delC	uc002urp.2	-	2	543	c.410delG	c.(409-411)TGTfs	p.C137fs		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	137					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			AAAGAAGCAACATTTGGGTTT	0.328													160	10	---	---	---	---	
FNBP4	23360	broad.mit.edu	37	11	47788664	47788669	+	In_Frame_Del	DEL	GGTGGT	-	-	rs59413596		TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr11:47788664_47788669delGGTGGT	uc009ylv.2	-	1	325_330	c.172_177delACCACC	c.(172-177)ACCACCdel	p.TT58del	FNBP4_uc001ngj.2_5'UTR|FNBP4_uc001ngl.2_RNA	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	58_59										ovary(1)	1						CAGTCACCGCGGTGGTGGTGGTCGTC	0.748													3	3	---	---	---	---	
ZDHHC20	253832	broad.mit.edu	37	13	21987884	21987895	+	In_Frame_Del	DEL	GTTCCTTTTCAG	-	-			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr13:21987884_21987895delGTTCCTTTTCAG	uc001uob.2	-	4	379_390	c.266_277delCTGAAAAGGAAC	c.(265-279)TCTGAAAAGGAACGT>TGT	p.89_93SEKER>C	ZDHHC20_uc001uod.2_RNA|ZDHHC20_uc001uoc.2_RNA|ZDHHC20_uc001uoe.2_RNA|ZDHHC20_uc010tcs.1_In_Frame_Del_p.26_30SEKER>C	NM_153251	NP_694983	Q5W0Z9	ZDH20_HUMAN	zinc finger, DHHC-type containing 20	89_93						integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)	1		all_cancers(29;8.1e-16)|all_epithelial(30;3.63e-14)|all_lung(29;2.04e-13)|Lung SC(185;0.0367)		all cancers(112;0.000268)|Epithelial(112;0.000735)|OV - Ovarian serous cystadenocarcinoma(117;0.00517)|Lung(94;0.171)		TTTTCATAACGTTCCTTTTCAGAATTGGACAA	0.302													83	8	---	---	---	---	
C16orf74	404550	broad.mit.edu	37	16	85743879	85743881	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr16:85743879_85743881delGCT	uc002fjc.3	-	3	237_239	c.61_63delAGC	c.(61-63)AGCdel	p.S21del		NM_206967	NP_996850	Q96GX8	CP074_HUMAN	MGC17624 protein	21											0						CCTCGTCGTGGCTGCTGCTGCTG	0.635													4	3	---	---	---	---	
C22orf43	51233	broad.mit.edu	37	22	23959767	23959769	+	In_Frame_Del	DEL	CAT	-	-			TCGA-EJ-5508-01A-02D-1576-08	TCGA-EJ-5508-10A-01D-1577-08									Somatic	Phase_I	Capture				Illumina GAIIx	275b578d-a786-4fdc-a995-5ab0505d68ee	1e2392d3-82f0-4f1e-b949-a0a634c87743	g.chr22:23959767_23959769delCAT	uc002zxf.2	-	7	789_791	c.512_514delATG	c.(511-516)GATGCC>GCC	p.D171del		NM_016449	NP_057533	Q6PGQ1	CV043_HUMAN	hypothetical protein LOC51233	171	Asp-rich.									skin(1)	1						CTTACCTGGGcatcatcatcatc	0.261													218	8	---	---	---	---	
