Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
LOC729991-MEF2B	4207	broad.mit.edu	36	19	19118365	19118366	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145785	exon7	c.768_769insC	p.P256fs	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1221159	1221160	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002458	exon31	c.6473_6474insC	p.I2158fs	.	.	.
KIAA0895L	653319	broad.mit.edu	36	16	65771969	65771970	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040715	exon2	c.46_47insC	p.S16fs	.	.	.
CDH15	1013	broad.mit.edu	36	16	87773428	87773429	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004933	exon2	c.146_147insC	p.I49fs	.	.	.
FAM193B	54540	broad.mit.edu	36	5	176896136	176896137	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190946	exon4	c.905_906insC	p.H302fs	.	.	.
SRRT	51593	broad.mit.edu	36	7	100322627	100322627	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128852	exon15	c.C1842T	p.Y614Y	.	.	.
LRRC17	10234	broad.mit.edu	36	7	102371976	102371976	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031692	exon4	c.G1012T	p.D338Y	.	.	.
DNAJC2	27000	broad.mit.edu	36	7	102744554	102744554	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001129887	exon11	c.A1227G	p.L409L	.	.	.
DNAJC2	27000	broad.mit.edu	36	7	102754260	102754260	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001129887	exon5	c.G538A	p.E180K	.	.	.
RELN	5649	broad.mit.edu	36	7	102947085	102947085	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005045	exon49	c.C7783A	p.L2595I	.	.	.
NAMPT	10135	broad.mit.edu	36	7	105696190	105696190	+	Silent	SNP	C	T	T	rs61740998	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005746	exon6	c.G699A	p.T233T	.	.	.
PRKAR2B	5577	broad.mit.edu	36	7	106497989	106497989	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002736	exon2	c.G335A	p.R112H	.	.	.
SLC26A4	5172	broad.mit.edu	36	7	107102776	107102776	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000441	exon6	c.C751A	p.L251I	.	.	.
DOCK4	9732	broad.mit.edu	36	7	111327726	111327726	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014705	exon15	c.C1420T	p.P474S	.	.	.
TMEM168	64418	broad.mit.edu	36	7	112211522	112211522	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022484	exon2	c.T595G	p.F199V	.	.	.
PPP1R3A	5506	broad.mit.edu	36	7	113306976	113306976	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002711	exon4	c.A1407C	p.K469N	.	.	.
PPP1R3A	5506	broad.mit.edu	36	7	113309391	113309391	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002711	exon3	c.G905A	p.R302Q	.	.	.
MDFIC	29969	broad.mit.edu	36	7	114406916	114406916	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199072	exon4	c.G664A	p.A222T	.	.	.
MET	4233	broad.mit.edu	36	7	116127012	116127012	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000245	exon2	c.C638T	p.S213L	.	.	.
CTTNBP2	83992	broad.mit.edu	36	7	117146924	117146924	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033427	exon21	c.C4514A	p.S1505Y	.	.	.
C7orf58	79974	broad.mit.edu	36	7	120554443	120554443	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024913	exon10	c.G1198T	p.E400X	.	.	.
HYAL4	23553	broad.mit.edu	36	7	123295760	123295760	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012269	exon3	c.G197T	p.R66I	.	.	.
SPAM1	6677	broad.mit.edu	36	7	123380970	123380970	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174044	exon3	c.A110C	p.N37T	.	.	.
GCC1	79571	broad.mit.edu	36	7	127011767	127011767	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024523	exon1	c.C706T	p.R236W	.	.	.
GCC1	79571	broad.mit.edu	36	7	127012003	127012003	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024523	exon1	c.G470T	p.R157I	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131538666	131538666	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020911	exon11	c.T2351C	p.V784A	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131843267	131843267	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181775	exon3	c.C726A	p.I242I	.	.	.
CALD1	800	broad.mit.edu	36	7	134295397	134295397	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033157	exon12	c.A1504C	p.N502H	.	.	.
DGKI	9162	broad.mit.edu	36	7	136730925	136730925	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004717	exon33	c.C3040A	p.L1014M	.	.	.
WEE2	494551	broad.mit.edu	36	7	141065342	141065342	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105558	exon4	c.G587T	p.R196I	.	.	.
OR9A4	130075	broad.mit.edu	36	7	141265237	141265237	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001656	exon1	c.C93A	p.F31L	.	.	.
OR9A4	130075	broad.mit.edu	36	7	141265701	141265701	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001656	exon1	c.A557C	p.K186T	.	.	.
TAS2R39	259285	broad.mit.edu	36	7	142591059	142591059	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176881	exon1	c.C426A	p.F142L	.	.	.
OR6B1	135946	broad.mit.edu	36	7	143332450	143332450	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005281	exon1	c.G428A	p.R143H	.	.	.
OR2A5	393046	broad.mit.edu	36	7	143378489	143378489	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012365	exon1	c.G62T	p.R21M	.	.	.
OR2A14	135941	broad.mit.edu	36	7	143457948	143457948	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001659	exon1	c.G810T	p.Q270H	.	.	.
OR2A7	401427	broad.mit.edu	36	7	143586845	143586845	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005328	exon1	c.G810T	p.K270N	.	.	.
C7orf33	202865	broad.mit.edu	36	7	147942113	147942113	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145304	exon2	c.C251A	p.A84D	.	.	.
GIMAP4	55303	broad.mit.edu	36	7	149900329	149900329	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018326	exon3	c.G238T	p.E80X	.	.	.
KCNH2	3757	broad.mit.edu	36	7	150278953	150278953	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172057	exon4	c.G1114A	p.D372N	.	.	.
SMARCD3	6604	broad.mit.edu	36	7	150570575	150570575	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003078	exon6	c.G465A	p.A155A	.	.	.
GALNTL5	168391	broad.mit.edu	36	7	151347669	151347669	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145292	exon9	c.G1182T	p.Q394H	.	.	.
TMEM195	392636	broad.mit.edu	36	7	15371713	15371713	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004320	exon12	c.G1214A	p.R405Q	.	.	.
CNPY1	285888	broad.mit.edu	36	7	154994450	154994450	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103176	exon2	c.G44T	p.R15I	.	.	.
MACC1	346389	broad.mit.edu	36	7	20167994	20167994	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182762	exon4	c.G17T	p.R6I	.	.	.
SP4	6671	broad.mit.edu	36	7	21436454	21436454	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003112	exon3	c.A1146G	p.G382G	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21785110	21785110	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003777	exon57	c.C9368A	p.S3123Y	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21901043	21901043	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003777	exon79	c.C12972T	p.I4324I	.	.	.
STK31	56164	broad.mit.edu	36	7	23838323	23838323	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122833	exon24	c.G2804C	p.R935T	.	.	.
MPP6	51678	broad.mit.edu	36	7	24656677	24656677	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016447	exon6	c.C472T	p.L158F	.	.	.
CBX3	11335	broad.mit.edu	36	7	26212573	26212573	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007276	exon3	c.G85T	p.E29X	.	.	.
GGCT	79017	broad.mit.edu	36	7	30506819	30506819	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199816	exon2	c.T145G	p.F49V	.	.	.
INMT	11185	broad.mit.edu	36	7	30761564	30761564	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006774	exon3	c.G364A	p.G122S	.	.	.
CCDC129	223075	broad.mit.edu	36	7	31648878	31648878	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194300	exon11	c.G1369T	p.D457Y	.	.	.
CCDC129	223075	broad.mit.edu	36	7	31649850	31649850	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194300	exon11	c.A2341G	p.K781E	.	.	.
HERPUD2	64224	broad.mit.edu	36	7	35644556	35644556	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022373	exon6	c.G546T	p.V182V	.	.	.
TXNDC3	51314	broad.mit.edu	36	7	37883116	37883116	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016616	exon12	c.C976A	p.L326I	.	.	.
SFRP4	6424	broad.mit.edu	36	7	37918342	37918342	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003014	exon4	c.G695A	p.R232Q	.	.	.
CDK13	8621	broad.mit.edu	36	7	40100505	40100505	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003718	exon14	c.G3940T	p.D1314Y	.	.	.
C7orf11	136647	broad.mit.edu	36	7	40139331	40139331	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138701	exon2	c.G392T	p.R131I	.	.	.
INHBA	3624	broad.mit.edu	36	7	41696637	41696637	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002192	exon3	c.G417T	p.E139D	.	.	.
GLI3	2737	broad.mit.edu	36	7	41970867	41970867	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000168	exon15	c.C4329A	p.F1443L	.	.	.
GLI3	2737	broad.mit.edu	36	7	41973918	41973918	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000168	exon14	c.C2232T	p.I744I	.	.	.
HECW1	23072	broad.mit.edu	36	7	43499234	43499234	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015052	exon19	c.C3367A	p.L1123I	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47802261	47802261	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138295	exon55	c.C8206T	p.L2736F	.	.	.
SUN3	256979	broad.mit.edu	36	7	48035048	48035048	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152782	exon2	c.A13G	p.T5A	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48285690	48285690	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152701	exon15	c.A5718C	p.K1906N	.	.	.
FIGNL1	63979	broad.mit.edu	36	7	50480619	50480619	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042762	exon4	c.C1861T	p.R621C	.	.	.
CCT6A	908	broad.mit.edu	36	7	56098244	56098244	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009186	exon13	c.G1433A	p.R478Q	.	.	.
ZNF479	90827	broad.mit.edu	36	7	57192536	57192536	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033273	exon5	c.A528C	p.K176N	.	.	.
USP42	84132	broad.mit.edu	36	7	6150281	6150281	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032172	exon9	c.C918T	p.I306I	.	.	.
ZNF107	51427	broad.mit.edu	36	7	63804443	63804443	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013746	exon5	c.G326T	p.C109F	.	.	.
ZNF92	168374	broad.mit.edu	36	7	64501628	64501628	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152626	exon4	c.G1166T	p.R389I	.	.	.
RABGEF1	27342	broad.mit.edu	36	7	65911413	65911413	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014504	exon9	c.G1183T	p.E395X	.	.	.
AUTS2	26053	broad.mit.edu	36	7	69869056	69869056	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015570	exon9	c.G1489A	p.E497K	.	.	.
BCL7B	9275	broad.mit.edu	36	7	72595894	72595894	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001707	exon3	c.C185T	p.S62L	.	.	.
CCDC146	57639	broad.mit.edu	36	7	76729441	76729441	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020879	exon9	c.C1054T	p.R352C	.	.	.
PTPN12	5782	broad.mit.edu	36	7	77038397	77038397	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002835	exon2	c.G166T	p.E56X	.	.	.
MAGI2	9863	broad.mit.edu	36	7	77836417	77836417	+	Nonsense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012301	exon7	c.T1095G	p.Y365X	.	.	.
ICA1	3382	broad.mit.edu	36	7	8134221	8134221	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004968	exon13	c.C1137A	p.I379I	.	.	.
CACNA2D1	781	broad.mit.edu	36	7	81431601	81431601	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000722	exon33	c.T2585G	p.F862C	.	.	.
CACNA2D1	781	broad.mit.edu	36	7	81474995	81474995	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000722	exon16	c.T1376G	p.V459G	.	.	.
PCLO	27445	broad.mit.edu	36	7	82272959	82272959	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033026	exon21	c.C14914A	p.L4972I	.	.	.
PCLO	27445	broad.mit.edu	36	7	82419368	82419368	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033026	exon5	c.A8837C	p.K2946T	.	.	.
PCLO	27445	broad.mit.edu	36	7	82423426	82423426	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033026	exon5	c.G4779A	p.K1593K	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84466742	84466742	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152754	exon17	c.C2284T	p.R762X	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84565070	84565070	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152754	exon2	c.A299C	p.K100T	.	.	.
ABCB4	5244	broad.mit.edu	36	7	86879261	86879261	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018849	exon23	c.C2808A	p.I936I	.	.	.
ABCB4	5244	broad.mit.edu	36	7	86911021	86911021	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018849	exon11	c.C1124A	p.P375H	.	.	.
ABCB1	5243	broad.mit.edu	36	7	87017138	87017138	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000927	exon14	c.G1519A	p.A507T	.	.	.
RUNDC3B	154661	broad.mit.edu	36	7	87283497	87283497	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134405	exon10	c.A1209C	p.L403F	.	.	.
NXPH1	30010	broad.mit.edu	36	7	8757555	8757555	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152745	exon3	c.T447C	p.F149F	.	.	.
ZNF804B	219578	broad.mit.edu	36	7	88685503	88685503	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181646	exon2	c.G207A	p.E69E	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91441166	91441166	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147185	exon2	c.G254T	p.R85I	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91564881	91564881	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147185	exon42	c.C10420A	p.L3474I	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92568762	92568762	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193307	exon2	c.C4585T	p.R1529C	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92570664	92570664	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193307	exon2	c.G2683T	p.E895X	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92571208	92571208	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193307	exon2	c.A2139G	p.R713R	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92599563	92599563	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152703	exon5	c.G3658T	p.E1220X	.	.	.
CALCR	799	broad.mit.edu	36	7	92928084	92928084	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001742	exon8	c.C633T	p.L211L	.	.	.
TFPI2	7980	broad.mit.edu	36	7	93356368	93356368	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006528	exon3	c.C375A	p.F125L	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98333421	98333421	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003496	exon8	c.G629A	p.R210Q	.	.	.
GJC3	349149	broad.mit.edu	36	7	99364444	99364444	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181538	exon1	c.G736A	p.D246N	.	.	.
COPS6	10980	broad.mit.edu	36	7	99526826	99526826	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006833	exon8	c.G679A	p.A227T	.	.	.
TASP1	55617	broad.mit.edu	36	20	13487737	13487737	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017714	exon8	c.G593T	p.R198I	.	.	.
TASP1	55617	broad.mit.edu	36	20	13552143	13552143	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017714	exon4	c.G232A	p.A78T	.	.	.
ESF1	51575	broad.mit.edu	36	20	13662414	13662414	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016649	exon10	c.T1904C	p.F635S	.	.	.
ESF1	51575	broad.mit.edu	36	20	13711225	13711225	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016649	exon2	c.T562G	p.L188V	.	.	.
SEL1L2	80343	broad.mit.edu	36	20	13795414	13795414	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025229	exon15	c.T1338G	p.I446M	.	.	.
KIF16B	55614	broad.mit.edu	36	20	16308507	16308507	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024704	exon19	c.G2140T	p.E714X	.	.	.
SEC23B	10483	broad.mit.edu	36	20	18444339	18444339	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032986	exon4	c.G325A	p.E109K	.	.	.
CRNKL1	51340	broad.mit.edu	36	20	19966119	19966119	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016652	exon14	c.C2227T	p.R743X	.	.	.
C20orf26	26074	broad.mit.edu	36	20	20226850	20226850	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015585	exon25	c.C3242T	p.A1081V	.	.	.
PLK1S1	55857	broad.mit.edu	36	20	21065112	21065112	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018474	exon3	c.A234C	p.Q78H	.	.	.
CPXM1	56265	broad.mit.edu	36	20	2727472	2727472	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184699	exon2	c.G240T	p.K80N	.	.	.
KIF3B	9371	broad.mit.edu	36	20	30362031	30362031	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004798	exon2	c.G790T	p.E264X	.	.	.
ASXL1	171023	broad.mit.edu	36	20	30484426	30484426	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015338	exon10	c.C1062A	p.F354L	.	.	.
ASXL1	171023	broad.mit.edu	36	20	30487276	30487276	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015338	exon12	c.A3100G	p.K1034E	.	.	.
DNMT3B	1789	broad.mit.edu	36	20	30847125	30847125	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175848	exon11	c.G1201A	p.A401T	.	.	.
TGM2	7052	broad.mit.edu	36	20	36193020	36193020	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004613	exon12	c.G1802A	p.R601H	.	.	.
TOP1	7150	broad.mit.edu	36	20	39178332	39178332	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003286	exon17	c.A1708C	p.T570P	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40534386	40534386	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133170	exon8	c.C1384A	p.L462I	.	.	.
RIMS4	140730	broad.mit.edu	36	20	42819800	42819800	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182970	exon4	c.C376T	p.R126W	.	.	.
SEMG2	6407	broad.mit.edu	36	20	43284467	43284467	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003008	exon2	c.C780T	p.L260L	.	.	.
ZNF334	55713	broad.mit.edu	36	20	44566347	44566347	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018102	exon4	c.C154A	p.H52N	.	.	.
SLC9A8	23315	broad.mit.edu	36	20	47889534	47889534	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015266	exon4	c.G339A	p.A113A	.	.	.
SLC9A8	23315	broad.mit.edu	36	20	47905494	47905494	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015266	exon8	c.C682A	p.L228I	.	.	.
PCNA	5111	broad.mit.edu	36	20	5047467	5047467	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002592	exon3	c.A267C	p.T89T	.	.	.
C20orf43	51507	broad.mit.edu	36	20	54483152	54483152	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016407	exon3	c.A176G	p.K59R	.	.	.
CTCFL	140690	broad.mit.edu	36	20	55524253	55524253	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080618	exon6	c.G1103A	p.R368H	.	.	.
PCK1	5105	broad.mit.edu	36	20	55572642	55572642	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002591	exon7	c.G973A	p.A325T	.	.	.
ZBP1	81030	broad.mit.edu	36	20	55618769	55618769	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160417	exon7	c.C932A	p.T311N	.	.	.
ZNF831	128611	broad.mit.edu	36	20	57202316	57202316	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178457	exon1	c.G2847T	p.E949D	.	.	.
C20orf177	63939	broad.mit.edu	36	20	57952478	57952478	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190826	exon5	c.G85A	p.A29T	.	.	.
CHGB	1114	broad.mit.edu	36	20	5851440	5851440	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001819	exon4	c.C650T	p.S217L	.	.	.
TAF4	6874	broad.mit.edu	36	20	60017597	60017597	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003185	exon5	c.A1790C	p.K597T	.	.	.
PRPF6	24148	broad.mit.edu	36	20	62084845	62084845	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012469	exon2	c.G73A	p.A25T	.	.	.
MYT1	4661	broad.mit.edu	36	20	62309669	62309669	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004535	exon7	c.G676A	p.E226K	.	.	.
TRAF3	7187	broad.mit.edu	36	14	102411741	102411741	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145725	exon5	c.G325T	p.E109X	.	.	.
MARK3	4140	broad.mit.edu	36	14	102988019	102988019	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128919	exon5	c.G358A	p.E120K	.	.	.
BAG5	9529	broad.mit.edu	36	14	103095940	103095940	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001015048	exon2	c.G1315A	p.D439N	.	.	.
BAG5	9529	broad.mit.edu	36	14	103096393	103096393	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001015048	exon2	c.G862T	p.E288X	.	.	.
OR4M1	441670	broad.mit.edu	36	14	19318600	19318600	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005500	exon1	c.C279A	p.S93S	.	.	.
OR4K2	390431	broad.mit.edu	36	14	19414481	19414481	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005501	exon1	c.C215A	p.S72Y	.	.	.
CHD8	57680	broad.mit.edu	36	14	20939065	20939065	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020920	exon22	c.T3342G	p.N1114K	.	.	.
MYH7	4625	broad.mit.edu	36	14	22968016	22968016	+	Silent	SNP	G	A	A	rs45508293	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000257	exon14	c.C1395T	p.F465F	.	.	.
MYH7	4625	broad.mit.edu	36	14	22969642	22969642	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000257	exon11	c.C966A	p.S322S	.	.	.
DHRS2	10202	broad.mit.edu	36	14	23178350	23178350	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005794	exon3	c.C263T	p.A88V	.	.	.
DHRS4L1	728635	broad.mit.edu	36	14	23589933	23589933	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001082488	exon10	c.C762T	p.I254I	.	.	.
TM9SF1	10548	broad.mit.edu	36	14	23732193	23732193	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014842	exon3	c.G468T	p.K156N	.	.	.
CHMP4A	29082	broad.mit.edu	36	14	23750817	23750817	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014169	exon2	c.G219A	p.E73E	.	.	.
NEDD8	4738	broad.mit.edu	36	14	23757254	23757254	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199823	exon3	c.G74A	p.R25Q	.	.	.
GZMB	3002	broad.mit.edu	36	14	24170993	24170993	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004131	exon4	c.C511T	p.R171X	.	.	.
HECTD1	25831	broad.mit.edu	36	14	30641908	30641908	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015382	exon41	c.T7515G	p.N2505K	.	.	.
ARHGAP5	394	broad.mit.edu	36	14	31632977	31632977	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001030055	exon2	c.T3351G	p.N1117K	.	.	.
SRP54	6729	broad.mit.edu	36	14	34538536	34538536	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003136	exon3	c.G100T	p.E34X	.	.	.
LRFN5	145581	broad.mit.edu	36	14	41426326	41426326	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152447	exon3	c.T748C	p.W250R	.	.	.
FAM179B	23116	broad.mit.edu	36	14	44550999	44550999	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015091	exon7	c.C3209A	p.S1070Y	.	.	.
FANCM	57697	broad.mit.edu	36	14	44687832	44687832	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020937	exon4	c.G802T	p.E268X	.	.	.
FANCM	57697	broad.mit.edu	36	14	44714088	44714088	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020937	exon14	c.T2381G	p.F794C	.	.	.
MDGA2	161357	broad.mit.edu	36	14	46394034	46394034	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182830	exon15	c.T1932C	p.N644N	.	.	.
KLHDC2	23588	broad.mit.edu	36	14	49314707	49314707	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014315	exon5	c.T529G	p.F177V	.	.	.
SDCCAG1	9147	broad.mit.edu	36	14	49362403	49362403	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004713	exon16	c.G1509T	p.K503N	.	.	.
SDCCAG1	9147	broad.mit.edu	36	14	49365657	49365657	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004713	exon13	c.G1097A	p.R366Q	.	.	.
FBXO34	55030	broad.mit.edu	36	14	54888195	54888195	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152231	exon2	c.G1334A	p.R445Q	.	.	.
C14orf101	54916	broad.mit.edu	36	14	56161998	56161998	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017799	exon12	c.A1544C	p.K515T	.	.	.
OTX2	5015	broad.mit.edu	36	14	56338811	56338811	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021728	exon5	c.C289T	p.R97X	.	.	.
SLC35F4	341880	broad.mit.edu	36	14	57125880	57125880	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080455	exon3	c.C502A	p.L168I	.	.	.
C14orf37	145407	broad.mit.edu	36	14	57668145	57668145	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001872	exon4	c.C1669A	p.L557M	.	.	.
ARID4A	5926	broad.mit.edu	36	14	57908366	57908366	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023000	exon24	c.C3518T	p.A1173V	.	.	.
DAAM1	23002	broad.mit.edu	36	14	58895870	58895870	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014992	exon22	c.A2558G	p.N853S	.	.	.
JKAMP	51528	broad.mit.edu	36	14	59024283	59024283	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098625	exon3	c.T217C	p.Y73H	.	.	.
JKAMP	51528	broad.mit.edu	36	14	59040337	59040337	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098625	exon7	c.C712A	p.L238I	.	.	.
SYT16	83851	broad.mit.edu	36	14	61532922	61532922	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031914	exon1	c.G432T	p.E144D	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62244917	62244917	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172375	exon10	c.C1832T	p.S611L	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62537886	62537886	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172376	exon4	c.G175T	p.E59X	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63517143	63517143	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015180	exon15	c.G1588T	p.E530X	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63589466	63589466	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015180	exon48	c.G9082T	p.E3028X	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63589693	63589693	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015180	exon48	c.G9309T	p.K3103N	.	.	.
FUT8	2530	broad.mit.edu	36	14	65258443	65258443	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178156	exon7	c.G1033T	p.E345X	.	.	.
SMOC1	64093	broad.mit.edu	36	14	69559758	69559758	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001034852	exon11	c.G1132A	p.D378N	.	.	.
ADAM21	8747	broad.mit.edu	36	14	69994453	69994453	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003813	exon1	c.A484C	p.N162H	.	.	.
HEATR4	399671	broad.mit.edu	36	14	73035531	73035531	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203309	exon12	c.C2212T	p.R738X	.	.	.
ACOT6	641372	broad.mit.edu	36	14	73156029	73156029	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037162	exon2	c.C357A	p.F119L	.	.	.
YLPM1	56252	broad.mit.edu	36	14	74352719	74352719	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019589	exon12	c.C5563T	p.R1855X	.	.	.
MLH3	27030	broad.mit.edu	36	14	74584356	74584356	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040108	exon2	c.G1756T	p.E586X	.	.	.
ACYP1	97	broad.mit.edu	36	14	74599971	74599971	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203488	exon2	c.A39C	p.E13D	.	.	.
FLVCR2	55640	broad.mit.edu	36	14	75171012	75171012	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017791	exon5	c.G1027T	p.E343X	.	.	.
ADCK1	57143	broad.mit.edu	36	14	77435343	77435343	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142545	exon5	c.G526T	p.D176Y	.	.	.
ADCK1	57143	broad.mit.edu	36	14	77461878	77461878	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142545	exon8	c.C823T	p.R275C	.	.	.
DIO2	1734	broad.mit.edu	36	14	79738992	79738992	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000793	exon3	c.G615A	p.P205P	.	.	.
FLRT2	23768	broad.mit.edu	36	14	85157783	85157783	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013231	exon2	c.C172T	p.P58S	.	.	.
PTPN21	11099	broad.mit.edu	36	14	88037433	88037433	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007039	exon7	c.A620C	p.Y207S	.	.	.
C14orf102	55051	broad.mit.edu	36	14	89838974	89838974	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017970	exon6	c.G1254A	p.W418X	.	.	.
C14orf102	55051	broad.mit.edu	36	14	89854126	89854126	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017970	exon2	c.T149C	p.V50A	.	.	.
TTC7B	145567	broad.mit.edu	36	14	90266177	90266177	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010854	exon5	c.A693G	p.K231K	.	.	.
TRIP11	9321	broad.mit.edu	36	14	91535450	91535450	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004239	exon13	c.T4779G	p.D1593E	.	.	.
ASB2	51676	broad.mit.edu	36	14	93487102	93487102	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016150	exon4	c.G732A	p.K244K	.	.	.
SERPINA6	866	broad.mit.edu	36	14	93850397	93850397	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001756	exon2	c.A342C	p.Q114H	.	.	.
SERPINA1	5265	broad.mit.edu	36	14	93919103	93919103	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127702	exon3	c.C225A	p.F75L	.	.	.
SERPINA4	5267	broad.mit.edu	36	14	94103326	94103326	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006215	exon3	c.C916T	p.R306W	.	.	.
SERPINA5	5104	broad.mit.edu	36	14	94123564	94123564	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000624	exon3	c.G112A	p.A38T	.	.	.
CLMN	79789	broad.mit.edu	36	14	94739743	94739743	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024734	exon9	c.T1696G	p.F566V	.	.	.
C14orf49	161176	broad.mit.edu	36	14	94991802	94991802	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152592	exon5	c.G802T	p.D268Y	.	.	.
SETD3	84193	broad.mit.edu	36	14	98949082	98949082	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032233	exon8	c.C808A	p.L270M	.	.	.
WDR25	79446	broad.mit.edu	36	14	99917056	99917056	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161476	exon2	c.G42A	p.A14A	.	.	.
CECR2	27443	broad.mit.edu	36	22	16358513	16358513	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031413	exon3	c.C353A	p.S118Y	.	.	.
CECR2	27443	broad.mit.edu	36	22	16402359	16402359	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031413	exon15	c.C2463T	p.R821R	.	.	.
CECR2	27443	broad.mit.edu	36	22	16408688	16408688	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031413	exon16	c.C3647A	p.S1216Y	.	.	.
IGLL1	3543	broad.mit.edu	36	22	22245765	22245765	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152855	exon2	c.C214A	p.Q72K	.	.	.
ZNF70	7621	broad.mit.edu	36	22	22416597	22416597	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021916	exon2	c.G731T	p.R244I	.	.	.
PIWIL3	440822	broad.mit.edu	36	22	23454201	23454201	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008496	exon15	c.G1875T	p.K625N	.	.	.
ADRBK2	157	broad.mit.edu	36	22	24389644	24389644	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005160	exon5	c.G414T	p.K138N	.	.	.
MTMR3	8897	broad.mit.edu	36	22	28751762	28751762	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153050	exon20	c.A3485G	p.D1162G	.	.	.
SLC35E4	339665	broad.mit.edu	36	22	29372901	29372901	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001479	exon2	c.C936T	p.Y312Y	.	.	.
MORC2	22880	broad.mit.edu	36	22	29658993	29658993	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014941	exon23	c.G2219A	p.R740H	.	.	.
SFI1	9814	broad.mit.edu	36	22	30257078	30257078	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014775	exon4	c.C301T	p.R101X	.	.	.
DEPDC5	9681	broad.mit.edu	36	22	30632008	30632008	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014662	exon41	c.T4382G	p.F1461C	.	.	.
YWHAH	7533	broad.mit.edu	36	22	30682269	30682269	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003405	exon2	c.G231T	p.K77N	.	.	.
LARGE	9215	broad.mit.edu	36	22	32487362	32487362	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133642	exon2	c.C102T	p.F34F	.	.	.
LARGE	9215	broad.mit.edu	36	22	32487441	32487441	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133642	exon2	c.G23A	p.R8K	.	.	.
MYH9	4627	broad.mit.edu	36	22	35020104	35020104	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002473	exon28	c.G3817A	p.D1273N	.	.	.
NCF4	4689	broad.mit.edu	36	22	35603801	35603801	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000631	exon10	c.C1010T	p.T337M	.	.	.
DMC1	11144	broad.mit.edu	36	22	37265332	37265332	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007068	exon9	c.C526T	p.R176C	.	.	.
PPPDE2	27351	broad.mit.edu	36	22	40330035	40330035	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015704	exon4	c.C249A	p.I83I	.	.	.
SEPT3	55964	broad.mit.edu	36	22	40720692	40720692	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019106	exon10	c.G1039A	p.D347N	.	.	.
TCF20	6942	broad.mit.edu	36	22	40940344	40940344	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005650	exon1	c.G912T	p.K304N	.	.	.
POLDIP3	84271	broad.mit.edu	36	22	41328914	41328914	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178136	exon2	c.C256T	p.R86X	.	.	.
TTLL1	25809	broad.mit.edu	36	22	41772479	41772479	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012263	exon10	c.A1023C	p.R341R	.	.	.
TTLL1	25809	broad.mit.edu	36	22	41801504	41801504	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012263	exon3	c.C33T	p.I11I	.	.	.
SMC1B	27127	broad.mit.edu	36	22	44173757	44173757	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148674	exon6	c.A995G	p.D332G	.	.	.
TBC1D22A	25771	broad.mit.edu	36	22	45665882	45665882	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014346	exon6	c.A765C	p.K255N	.	.	.
BRD1	23774	broad.mit.edu	36	22	48603870	48603870	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014577	exon1	c.G100A	p.A34T	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48895101	48895101	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164104	exon7	c.C1049T	p.S350L	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48906088	48906088	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164104	exon11	c.C1710T	p.V570V	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48915100	48915100	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164104	exon15	c.G1984T	p.E662X	.	.	.
ACR	49	broad.mit.edu	36	22	49529402	49529402	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001097	exon4	c.G613A	p.D205N	.	.	.
RGL3	57139	broad.mit.edu	36	19	11369132	11369132	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161616	exon17	c.C1906T	p.R636X	.	.	.
ZNF491	126069	broad.mit.edu	36	19	11778068	11778068	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152356	exon3	c.G300T	p.E100D	.	.	.
ZNF700	90592	broad.mit.edu	36	19	11920355	11920355	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144566	exon4	c.G516T	p.K172N	.	.	.
ZNF878	729747	broad.mit.edu	36	19	12016891	12016891	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080404	exon5	c.G466T	p.E156X	.	.	.
ZNF625	90589	broad.mit.edu	36	19	12117528	12117528	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145233	exon4	c.C505T	p.R169X	.	.	.
ZNF563	147837	broad.mit.edu	36	19	12294451	12294451	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145276	exon2	c.G78T	p.K26N	.	.	.
MAN2B1	4125	broad.mit.edu	36	19	12619323	12619323	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000528	exon22	c.G2754A	p.E918E	.	.	.
PRDX2	7001	broad.mit.edu	36	19	12771788	12771788	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005809	exon5	c.C396T	p.I132I	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13226981	13226981	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174080	exon29	c.C4686T	p.F1562F	.	.	.
RPS15	6209	broad.mit.edu	36	19	1391147	1391147	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018	exon3	c.G219A	p.P73P	.	.	.
PRKACA	5566	broad.mit.edu	36	19	14064926	14064926	+	Read-through	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002730	exon10	c.T1054C	p.X352Q	.	.	.
EMR3	84658	broad.mit.edu	36	19	14633866	14633866	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032571	exon4	c.C264T	p.V88V	.	.	.
OR7C2	26658	broad.mit.edu	36	19	14913891	14913891	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012377	exon1	c.C591T	p.I197I	.	.	.
NOTCH3	4854	broad.mit.edu	36	19	15137215	15137215	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000435	exon31	c.G5779A	p.A1927T	.	.	.
CYP4F22	126410	broad.mit.edu	36	19	15515824	15515824	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173483	exon9	c.G982A	p.E328K	.	.	.
CYP4F12	66002	broad.mit.edu	36	19	15655313	15655313	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023944	exon7	c.G658T	p.E220X	.	.	.
CALR3	125972	broad.mit.edu	36	19	16462326	16462326	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145046	exon3	c.G249A	p.P83P	.	.	.
TMEM38A	79041	broad.mit.edu	36	19	16652313	16652313	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024074	exon3	c.G387T	p.K129N	TMEM38A,central_nervous_system,brain,Substitution - coding silent,0	.	.
FAM129C	199786	broad.mit.edu	36	19	17525141	17525141	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173544	exon16	c.G1863A	p.V621V	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17617824	17617824	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080421	exon17	c.C2141A	p.T714N	.	.	.
ZNF506	440515	broad.mit.edu	36	19	19766706	19766706	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145404	exon3	c.A894G	p.K298K	.	.	.
ZNF506	440515	broad.mit.edu	36	19	19767181	19767181	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145404	exon3	c.C419A	p.S140Y	.	.	.
ZNF626	199777	broad.mit.edu	36	19	20599777	20599777	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001076675	exon4	c.G746T	p.R249I	.	.	.
ZNF714	148206	broad.mit.edu	36	19	21092394	21092394	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182515	exon5	c.C1084A	p.H362N	.	.	.
ZNF493	284443	broad.mit.edu	36	19	21399010	21399010	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175910	exon2	c.A1325G	p.H442R	.	.	.
ZNF429	353088	broad.mit.edu	36	19	21504366	21504366	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001415	exon2	c.G70A	p.A24T	.	.	.
ZNF429	353088	broad.mit.edu	36	19	21511357	21511357	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001415	exon4	c.G662T	p.R221I	.	.	.
ZNF100	163227	broad.mit.edu	36	19	21702028	21702028	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173531	exon5	c.G926T	p.R309I	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21946973	21946973	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007153	exon4	c.C2703A	p.F901L	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21949190	21949190	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007153	exon4	c.A486G	p.R162R	.	.	.
ZNF98	148198	broad.mit.edu	36	19	22366432	22366432	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098626	exon4	c.T1445C	p.V482A	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22732368	22732368	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080409	exon5	c.C1910A	p.T637N	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22732826	22732826	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080409	exon5	c.G1452T	p.K484N	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22733182	22733182	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080409	exon5	c.G1096T	p.E366X	.	.	.
ZNF91	7644	broad.mit.edu	36	19	23336623	23336623	+	Missense_Mutation	SNP	C	T	T	rs410211	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003430	exon4	c.G998A	p.R333H	.	.	.
ZNF675	171392	broad.mit.edu	36	19	23627993	23627993	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138330	exon4	c.A1582C	p.I528L	.	.	.
ZNF681	148213	broad.mit.edu	36	19	23719964	23719964	+	Silent	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138286	exon4	c.T228G	p.V76V	.	.	.
C19orf2	8725	broad.mit.edu	36	19	35169062	35169062	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003796	exon4	c.A265C	p.K89Q	.	.	.
GPATCH1	55094	broad.mit.edu	36	19	38292519	38292519	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018025	exon11	c.G1342T	p.E448X	.	.	.
ITGB1BP3	27231	broad.mit.edu	36	19	3892108	3892108	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170678	exon7	c.C435T	p.F145F	.	.	.
LSM14A	26065	broad.mit.edu	36	19	39391740	39391740	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114093	exon4	c.C482T	p.A161V	.	.	.
ZNF181	339318	broad.mit.edu	36	19	39924652	39924652	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145665	exon4	c.G1523T	p.R508I	.	.	.
ZNF599	148103	broad.mit.edu	36	19	39942242	39942242	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007248	exon4	c.G1304A	p.S435N	.	.	.
ZNF599	148103	broad.mit.edu	36	19	39943102	39943102	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007248	exon4	c.G444T	p.E148D	.	.	.
NPHS1	4868	broad.mit.edu	36	19	41031440	41031440	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004646	exon9	c.T1109C	p.V370A	.	.	.
ZFP14	57677	broad.mit.edu	36	19	41524076	41524076	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020917	exon5	c.C492T	p.I164I	.	.	.
ANKRD24	170961	broad.mit.edu	36	19	4168067	4168067	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133475	exon18	c.C1910T	p.A637V	.	.	.
ZNF382	84911	broad.mit.edu	36	19	41810104	41810104	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032825	exon5	c.G1465T	p.E489X	.	.	.
ZNF790	388536	broad.mit.edu	36	19	42001324	42001324	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206894	exon5	c.C1762A	p.L588I	.	.	.
ZNF568	374900	broad.mit.edu	36	19	42119572	42119572	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198539	exon5	c.C220T	p.R74X	.	.	.
ZNF585A	199704	broad.mit.edu	36	19	42334512	42334512	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199126	exon6	c.G1964A	p.R655Q	.	.	.
ZNF585A	199704	broad.mit.edu	36	19	42335249	42335249	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199126	exon6	c.G1227T	p.K409N	.	.	.
ZNF569	148266	broad.mit.edu	36	19	42595377	42595377	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152484	exon6	c.T2023C	p.S675P	.	.	.
ZNF569	148266	broad.mit.edu	36	19	42596425	42596425	+	Silent	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152484	exon6	c.T975G	p.P325P	.	.	.
ZNF793	390927	broad.mit.edu	36	19	42715107	42715107	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013659	exon6	c.T25C	p.S9P	.	.	.
ZNF571	51276	broad.mit.edu	36	19	42748358	42748358	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016536	exon4	c.G812T	p.R271I	.	.	.
ZNF540	163255	broad.mit.edu	36	19	42794355	42794355	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152606	exon5	c.C334T	p.R112C	.	.	.
ZNF540	163255	broad.mit.edu	36	19	42795570	42795570	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152606	exon5	c.C1549A	p.H517N	.	.	.
ZNF781	163115	broad.mit.edu	36	19	42852061	42852061	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152605	exon4	c.G829T	p.E277X	.	.	.
ZNF573	126231	broad.mit.edu	36	19	42922518	42922518	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172691	exon5	c.G707T	p.R236I	.	.	.
RYR1	6261	broad.mit.edu	36	19	43697568	43697568	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042723	exon64	c.A9535G	p.K3179E	.	.	.
DLL3	10683	broad.mit.edu	36	19	44683116	44683116	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203486	exon3	c.G373A	p.E125K	.	.	.
LGALS14	56891	broad.mit.edu	36	19	44889150	44889150	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020129	exon2	c.T89G	p.F30C	.	.	.
LYPD4	147719	broad.mit.edu	36	19	47033902	47033902	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173506	exon4	c.C485A	p.S162Y	.	.	.
ATP1A3	478	broad.mit.edu	36	19	47174266	47174266	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152296	exon13	c.C1683T	p.F561F	.	.	.
POU2F2	5452	broad.mit.edu	36	19	47318365	47318365	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002698	exon3	c.G100A	p.E34K	.	.	.
CEACAM8	1088	broad.mit.edu	36	19	47785599	47785599	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001816	exon3	c.C553A	p.L185I	.	.	.
PSG6	5675	broad.mit.edu	36	19	48221001	48221001	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002785	exon2	c.A112C	p.I38L	.	.	.
PSG4	5672	broad.mit.edu	36	19	48391070	48391070	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002780	exon4	c.G905A	p.R302K	.	.	.
ZNF404	342908	broad.mit.edu	36	19	49070011	49070011	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033719	exon2	c.A186G	p.V62V	.	.	.
ZNF224	7767	broad.mit.edu	36	19	49303236	49303236	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013398	exon6	c.G1083A	p.T361T	.	.	.
ZNF235	9310	broad.mit.edu	36	19	49484989	49484989	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004234	exon5	c.G439T	p.E147X	.	.	.
ZNF229	7772	broad.mit.edu	36	19	49625991	49625991	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014518	exon6	c.G805A	p.E269K	.	.	.
ZNF180	7733	broad.mit.edu	36	19	49672916	49672916	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013256	exon5	c.G1622T	p.R541I	.	.	.
PNMAL1	55228	broad.mit.edu	36	19	51665838	51665838	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018215	exon2	c.G295T	p.D99Y	.	.	.
ZC3H4	23211	broad.mit.edu	36	19	52289176	52289176	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015168	exon4	c.G383A	p.R128H	.	.	.
NAPA	8775	broad.mit.edu	36	19	52698543	52698543	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003827	exon2	c.G127A	p.E43K	.	.	.
PLA2G4C	8605	broad.mit.edu	36	19	53257078	53257078	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159323	exon14	c.G1246A	p.D416N	.	.	.
CCDC114	93233	broad.mit.edu	36	19	53493104	53493104	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144577	exon12	c.G1356A	p.P452P	.	.	.
LMTK3	114783	broad.mit.edu	36	19	53696450	53696450	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080434	exon10	c.G990T	p.E330D	.	.	.
KLK12	43849	broad.mit.edu	36	19	56224404	56224404	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145894	exon6	c.T713C	p.V238A	.	.	.
CD33	945	broad.mit.edu	36	19	56420423	56420423	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001772	exon2	c.T175G	p.Y59D	.	.	.
SIGLEC12	89858	broad.mit.edu	36	19	56692437	56692437	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033329	exon5	c.T1126C	p.Y376H	.	.	.
SIGLEC12	89858	broad.mit.edu	36	19	56695374	56695374	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033329	exon1	c.C66A	p.F22L	.	.	.
TMEM146	257062	broad.mit.edu	36	19	5696965	5696965	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152784	exon9	c.C699T	p.F233F	.	.	.
ZNF613	79898	broad.mit.edu	36	19	57139372	57139372	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024840	exon6	c.T316G	p.L106V	.	.	.
ZNF614	80110	broad.mit.edu	36	19	57211199	57211199	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025040	exon5	c.C1464T	p.C488C	.	.	.
ZNF836	162962	broad.mit.edu	36	19	57350133	57350133	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102657	exon5	c.G2615A	p.G872E	.	.	.
ZNF836	162962	broad.mit.edu	36	19	57350916	57350916	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102657	exon5	c.A1832C	p.K611T	.	.	.
ZNF610	162963	broad.mit.edu	36	19	57560915	57560915	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173530	exon6	c.C472T	p.R158C	.	.	.
ZNF578	147660	broad.mit.edu	36	19	57706990	57706990	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099694	exon6	c.A1544C	p.E515A	.	.	.
ZNF808	388558	broad.mit.edu	36	19	57750488	57750488	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039886	exon5	c.G2507A	p.R836H	.	.	.
ZNF611	81856	broad.mit.edu	36	19	57901536	57901536	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161501	exon5	c.G377T	p.R126I	.	.	.
ZNF28	7576	broad.mit.edu	36	19	57994846	57994846	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006969	exon4	c.G2064T	p.E688D	.	.	.
ZNF816	125893	broad.mit.edu	36	19	58146418	58146418	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031665	exon5	c.G422A	p.R141Q	.	.	.
ZNF415	55786	broad.mit.edu	36	19	58303983	58303983	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136038	exon4	c.G1127A	p.R376K	.	.	.
ZNF677	342926	broad.mit.edu	36	19	58432964	58432964	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182609	exon5	c.G828A	p.S276S	.	.	.
NLRP12	91662	broad.mit.edu	36	19	59005836	59005836	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144687	exon3	c.G889A	p.D297N	.	.	.
LILRA4	23547	broad.mit.edu	36	19	59536820	59536820	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012276	exon8	c.G1335T	p.E445D	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60144734	60144734	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139176	exon2	c.A158C	p.K53T	.	.	.
NLRP9	338321	broad.mit.edu	36	19	60933055	60933055	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176820	exon3	c.C1948A	p.L650I	.	.	.
NLRP11	204801	broad.mit.edu	36	19	60988891	60988891	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145007	exon12	c.A3014C	p.N1005T	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61062294	61062294	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_134444	exon3	c.G1723T	p.E575X	.	.	.
NLRP13	126204	broad.mit.edu	36	19	61113845	61113845	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176810	exon6	c.G2178T	p.E726D	NLRP13,lung,NS,Substitution - Missense,-2	.	.
ACSBG2	81616	broad.mit.edu	36	19	6133780	6133780	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030924	exon9	c.C925A	p.L309I	.	.	.
ZNF583	147949	broad.mit.edu	36	19	61626980	61626980	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159860	exon5	c.G1141A	p.E381K	.	.	.
ZNF583	147949	broad.mit.edu	36	19	61627458	61627458	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159860	exon5	c.G1619T	p.R540I	.	.	.
ZNF471	57573	broad.mit.edu	36	19	61728432	61728432	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020813	exon5	c.G1184T	p.R395I	.	.	.
ZNF471	57573	broad.mit.edu	36	19	61728768	61728768	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020813	exon5	c.G1520T	p.R507I	.	.	.
ZNF470	388566	broad.mit.edu	36	19	61780859	61780859	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001668	exon6	c.G1250T	p.R417I	.	.	.
ZNF470	388566	broad.mit.edu	36	19	61781531	61781531	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001668	exon6	c.G1922T	p.R641I	.	.	.
PEG3	5178	broad.mit.edu	36	19	62019027	62019027	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146186	exon7	c.C2595A	p.I865I	.	.	.
USP29	57663	broad.mit.edu	36	19	62333571	62333571	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020903	exon4	c.G1716T	p.E572D	.	.	.
USP29	57663	broad.mit.edu	36	19	62334605	62334605	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020903	exon4	c.C2750A	p.S917Y	.	.	.
ZIM3	114026	broad.mit.edu	36	19	62339210	62339210	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052882	exon5	c.G307T	p.E103X	.	.	.
ZNF547	284306	broad.mit.edu	36	19	62575022	62575022	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173631	exon3	c.G85A	p.D29N	.	.	.
ZNF749	388567	broad.mit.edu	36	19	62648139	62648139	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001023561	exon3	c.G1811T	p.R604I	.	.	.
ZIK1	284307	broad.mit.edu	36	19	62794087	62794087	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010879	exon4	c.C1096A	p.L366I	.	.	.
ZNF530	348327	broad.mit.edu	36	19	62809127	62809127	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020880	exon3	c.A422G	p.N141S	.	.	.
ZNF154	7710	broad.mit.edu	36	19	62905177	62905177	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085384	exon3	c.G952T	p.E318X	.	.	.
ZNF671	79891	broad.mit.edu	36	19	62923723	62923723	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024833	exon4	c.G1543T	p.E515X	.	.	.
ZNF544	27300	broad.mit.edu	36	19	63464361	63464361	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014480	exon7	c.G577T	p.E193X	.	.	.
ZNF584	201514	broad.mit.edu	36	19	63620017	63620017	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173548	exon4	c.G320A	p.R107K	.	.	.
MZF1	7593	broad.mit.edu	36	19	63772754	63772754	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198055	exon4	c.T592G	p.S198A	.	.	.
FBN3	84467	broad.mit.edu	36	19	8089824	8089824	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032447	exon25	c.T3294C	p.C1098C	.	.	.
PRAM1	84106	broad.mit.edu	36	19	8469890	8469890	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032152	exon2	c.G802A	p.A268T	.	.	.
MUC16	94025	broad.mit.edu	36	19	8909443	8909443	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon5	c.C33188A	p.S11063Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8911212	8911212	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon5	c.G31419T	p.E10473D	.	.	.
MUC16	94025	broad.mit.edu	36	19	8926503	8926503	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.T21943C	p.S7315P	.	.	.
MUC16	94025	broad.mit.edu	36	19	8934357	8934357	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.G14089T	p.D4697Y	.	.	.
ZNF560	147741	broad.mit.edu	36	19	9439100	9439100	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152476	exon10	c.G1523A	p.R508K	.	.	.
ZNF121	7675	broad.mit.edu	36	19	9538536	9538536	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008727	exon4	c.G253A	p.D85N	.	.	.
ZNF846	162993	broad.mit.edu	36	19	9729848	9729848	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077624	exon6	c.G905T	p.R302I	.	.	.
SNX31	169166	broad.mit.edu	36	8	101678153	101678153	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152628	exon10	c.C868A	p.L290I	.	.	.
ODF1	4956	broad.mit.edu	36	8	103633438	103633438	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024410	exon1	c.C307T	p.R103X	.	.	.
PRSS55	203074	broad.mit.edu	36	8	10424442	10424442	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001197020	exon2	c.C170A	p.S57Y	.	.	.
TRHR	7201	broad.mit.edu	36	8	110169693	110169693	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003301	exon1	c.C776T	p.S259F	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113718359	113718359	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198123	exon22	c.G3578A	p.R1193Q	.	.	.
DEFB136	613210	broad.mit.edu	36	8	11868969	11868969	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033018	exon2	c.C123A	p.F41L	.	.	.
TAF2	6873	broad.mit.edu	36	8	120883394	120883394	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003184	exon6	c.G613T	p.E205X	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121285166	121285166	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021110	exon9	c.C915A	p.I305I	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121414141	121414141	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021110	exon42	c.G4771A	p.A1591T	.	.	.
MRPL13	28998	broad.mit.edu	36	8	121506764	121506764	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014078	exon4	c.T269G	p.V90G	.	.	.
ANXA13	312	broad.mit.edu	36	8	124762759	124762759	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004306	exon11	c.G853T	p.A285S	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125103046	125103046	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039112	exon17	c.G2089A	p.E697K	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125182672	125182672	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039112	exon38	c.C5037A	p.F1679L	.	.	.
TATDN1	83940	broad.mit.edu	36	8	125576914	125576914	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146160	exon8	c.A503C	p.E168A	.	.	.
TATDN1	83940	broad.mit.edu	36	8	125590048	125590048	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146160	exon5	c.G311A	p.R104Q	.	.	.
DLC1	10395	broad.mit.edu	36	8	13001862	13001862	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182643	exon9	c.A2355C	p.S785S	.	.	.
ASAP1	50807	broad.mit.edu	36	8	131142268	131142268	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018482	exon27	c.C2931A	p.L977L	.	.	.
LRRC6	23639	broad.mit.edu	36	8	133742927	133742927	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012472	exon2	c.A139C	p.K47Q	.	.	.
DLC1	10395	broad.mit.edu	36	8	13401055	13401055	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182643	exon2	c.T897C	p.F299F	.	.	.
DLC1	10395	broad.mit.edu	36	8	13401687	13401687	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182643	exon2	c.G265T	p.D89Y	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139232769	139232769	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015912	exon13	c.T3131G	p.F1044C	.	.	.
SGCZ	137868	broad.mit.edu	36	8	14139559	14139559	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139167	exon4	c.G337A	p.D113N	.	.	.
FLJ43860	389690	broad.mit.edu	36	8	142550422	142550422	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207414	exon16	c.C1921T	p.L641L	.	.	.
CYP11B1	1584	broad.mit.edu	36	8	143955610	143955610	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001026213	exon3	c.G426T	p.L142F	.	.	.
C8orf31	286122	broad.mit.edu	36	8	144196014	144196014	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173687	exon3	c.C146A	p.S49Y	.	.	.
SGCZ	137868	broad.mit.edu	36	8	14456723	14456723	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139167	exon2	c.T123G	p.I41M	.	.	.
ZNF7	7553	broad.mit.edu	36	8	146038273	146038273	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003416	exon5	c.G977T	p.R326I	.	.	.
ZNF7	7553	broad.mit.edu	36	8	146038872	146038872	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003416	exon5	c.G1576A	p.E526K	.	.	.
TUSC3	7991	broad.mit.edu	36	8	15552607	15552607	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178234	exon3	c.G339A	p.A113A	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17555008	17555008	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001925	exon11	c.A3189G	p.E1063E	.	.	.
FGL1	2267	broad.mit.edu	36	8	17770725	17770725	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004467	exon6	c.T571G	p.F191V	.	.	.
PCM1	5108	broad.mit.edu	36	8	17874265	17874265	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006197	exon23	c.A3732C	p.L1244F	.	.	.
ATP6V1B2	526	broad.mit.edu	36	8	20114691	20114691	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001693	exon9	c.C922T	p.R308X	.	.	.
PIWIL2	55124	broad.mit.edu	36	8	22228543	22228543	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018068	exon18	c.G2148T	p.K716N	.	.	.
ADAM28	10863	broad.mit.edu	36	8	24243451	24243451	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021777	exon11	c.C981T	p.S327S	.	.	.
NEFL	4747	broad.mit.edu	36	8	24866353	24866353	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006158	exon4	c.G1520T	p.R507I	.	.	.
EBF2	64641	broad.mit.edu	36	8	25774770	25774770	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022659	exon12	c.C1136T	p.A379V	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3034857	3034857	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033225	exon34	c.G5383A	p.D1795N	.	.	.
TEX15	56154	broad.mit.edu	36	8	30820817	30820817	+	Nonsense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031271	exon1	c.T5259G	p.Y1753X	.	.	.
TEX15	56154	broad.mit.edu	36	8	30823707	30823707	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031271	exon1	c.A2369G	p.D790G	.	.	.
PURG	29942	broad.mit.edu	36	8	31009044	31009044	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001015508	exon1	c.C797A	p.S266Y	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3253017	3253017	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033225	exon14	c.G1883T	p.X628L	.	.	.
NRG1	3084	broad.mit.edu	36	8	32719749	32719749	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013957	exon7	c.T647G	p.F216C	.	.	.
NRG1	3084	broad.mit.edu	36	8	32740307	32740307	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159996	exon8	c.A836G	p.N279S	.	.	.
FUT10	84750	broad.mit.edu	36	8	33430436	33430436	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032664	exon3	c.G216A	p.R72R	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36781937	36781937	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031836	exon4	c.C444A	p.F148L	.	.	.
IDO1	3620	broad.mit.edu	36	8	39895535	39895535	+	Missense_Mutation	SNP	G	T	T	rs12545878	by-cluster,by-hapmap	TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002164	exon4	c.G348T	p.K116N	.	.	.
ZMAT4	79698	broad.mit.edu	36	8	40674001	40674001	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024645	exon4	c.C269T	p.A90V	.	.	.
GINS4	84296	broad.mit.edu	36	8	41516595	41516595	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032336	exon6	c.C399A	p.F133L	.	.	.
ANK1	286	broad.mit.edu	36	8	41666968	41666968	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020475	exon33	c.G4038A	p.A1346A	.	.	.
AP3M2	10947	broad.mit.edu	36	8	42134764	42134764	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134296	exon4	c.G422A	p.R141Q	.	.	.
CHRNB3	1142	broad.mit.edu	36	8	42706093	42706093	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000749	exon5	c.C486T	p.F162F	.	.	.
CHRNA6	8973	broad.mit.edu	36	8	42730609	42730609	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004198	exon5	c.C890A	p.S297Y	.	.	.
C8orf42	157695	broad.mit.edu	36	8	434561	434561	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175075	exon2	c.A145G	p.T49A	.	.	.
SNAI2	6591	broad.mit.edu	36	8	49995211	49995211	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003068	exon2	c.C422T	p.S141F	.	.	.
AGPAT5	55326	broad.mit.edu	36	8	6602107	6602107	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018361	exon8	c.T885G	p.F295L	.	.	.
MTFR1	9650	broad.mit.edu	36	8	66782032	66782032	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145838	exon4	c.C652T	p.R218W	.	.	.
DNAJC5B	85479	broad.mit.edu	36	8	67126388	67126388	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033105	exon3	c.G52T	p.E18X	.	.	.
TRIM55	84675	broad.mit.edu	36	8	67225222	67225222	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_184085	exon7	c.G952T	p.E318X	.	.	.
ARFGEF1	10565	broad.mit.edu	36	8	68340820	68340820	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006421	exon14	c.G2098T	p.E700X	.	.	.
CPA6	57094	broad.mit.edu	36	8	68497415	68497415	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020361	exon11	c.G1192A	p.E398K	.	.	.
NCOA2	10499	broad.mit.edu	36	8	71219452	71219452	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006540	exon13	c.A2791C	p.N931H	.	.	.
SPAG11B	10407	broad.mit.edu	36	8	7307741	7307741	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058200	exon2	c.G112T	p.E38X	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77779271	77779271	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024721	exon2	c.C393T	p.I131I	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77930567	77930567	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024721	exon10	c.G8855A	p.R2952Q	.	.	.
SLC7A13	157724	broad.mit.edu	36	8	87311290	87311290	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138817	exon1	c.A333C	p.Q111H	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88954930	88954930	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152418	exon1	c.C386A	p.S129Y	.	.	.
PPP1R3B	79660	broad.mit.edu	36	8	9036023	9036023	+	Silent	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024607	exon2	c.T549G	p.T183T	.	.	.
TMEM64	169200	broad.mit.edu	36	8	91707226	91707226	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146273	exon2	c.G836A	p.R279Q	.	.	.
TMEM55A	55529	broad.mit.edu	36	8	92078122	92078122	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018710	exon6	c.G566A	p.R189Q	.	.	.
RUNX1T1	862	broad.mit.edu	36	8	93067552	93067552	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198626	exon10	c.G1255A	p.V419I	.	.	.
RBM12B	389677	broad.mit.edu	36	8	94817664	94817664	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203390	exon3	c.G151T	p.E51X	.	.	.
PTDSS1	9791	broad.mit.edu	36	8	97401696	97401696	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014754	exon10	c.G1120A	p.D374N	.	.	.
PGCP	10404	broad.mit.edu	36	8	97866393	97866393	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016134	exon2	c.G92T	p.R31M	.	.	.
PGCP	10404	broad.mit.edu	36	8	97866704	97866704	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016134	exon2	c.C403A	p.L135I	.	.	.
MATN2	4147	broad.mit.edu	36	8	99088986	99088986	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030583	exon10	c.C1554T	p.S518S	.	.	.
C8orf47	203111	broad.mit.edu	36	8	99170730	99170730	+	Missense_Mutation	SNP	G	T	T	rs35339824	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173549	exon2	c.G309T	p.K103N	.	.	.
POP1	10940	broad.mit.edu	36	8	99222236	99222236	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145860	exon11	c.G1538A	p.R513Q	.	.	.
POP1	10940	broad.mit.edu	36	8	99237798	99237798	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145860	exon15	c.G2402A	p.S801N	.	.	.
KCNS2	3788	broad.mit.edu	36	8	99509611	99509611	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020697	exon2	c.G228T	p.E76D	.	.	.
CDC14A	8556	broad.mit.edu	36	1	100591931	100591931	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033312	exon2	c.G75T	p.R25S	.	.	.
CDC14A	8556	broad.mit.edu	36	1	100722585	100722585	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033312	exon11	c.G1127A	p.R376Q	.	.	.
VCAM1	7412	broad.mit.edu	36	1	100972820	100972820	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199834	exon8	c.G1781A	p.R594Q	.	.	.
S1PR1	1901	broad.mit.edu	36	1	101477618	101477618	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001400	exon2	c.A490G	p.I164V	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103125091	103125091	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001854	exon63	c.C4718T	p.S1573L	.	.	.
AMY2B	280	broad.mit.edu	36	1	103918031	103918031	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020978	exon6	c.A692C	p.N231T	.	.	.
SORT1	6272	broad.mit.edu	36	1	109711613	109711613	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002959	exon3	c.T380C	p.L127S	.	.	.
CSF1	1435	broad.mit.edu	36	1	110267753	110267753	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172210	exon6	c.A987G	p.G329G	.	.	.
RBM15	64783	broad.mit.edu	36	1	110685138	110685138	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022768	exon1	c.G1588A	p.E530K	.	.	.
MTOR	2475	broad.mit.edu	36	1	11091949	11091949	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004958	exon56	c.C7513T	p.R2505X	FRAP1,kidney,NS,Substitution - Missense,+1	.	.
KCNA3	3738	broad.mit.edu	36	1	111017526	111017526	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002232	exon1	c.C1429T	p.P477S	.	.	.
SYT6	148281	broad.mit.edu	36	1	114482072	114482072	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_205848	exon3	c.G384T	p.K128N	.	.	.
AMPD1	270	broad.mit.edu	36	1	115020129	115020129	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000036	exon11	c.G1506T	p.K502N	.	.	.
NRAS	4893	broad.mit.edu	36	1	115058052	115058052	+	Missense_Mutation	SNP	T	C	C	rs11554290	by-hapmap	TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002524	exon3	c.A182G	p.Q61R	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1	.	.
TSHB	7252	broad.mit.edu	36	1	115378253	115378253	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000549	exon3	c.C299A	p.A100D	.	.	.
CASQ2	845	broad.mit.edu	36	1	116077066	116077066	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001232	exon5	c.C585A	p.F195L	.	.	.
FBXO6	26270	broad.mit.edu	36	1	11651469	11651469	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018438	exon2	c.G167A	p.R56H	.	.	.
CD101	9398	broad.mit.edu	36	1	117361610	117361610	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004258	exon5	c.A1604C	p.K535T	.	.	.
CD101	9398	broad.mit.edu	36	1	117366107	117366107	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004258	exon7	c.G2407T	p.E803X	.	.	.
TBX15	6913	broad.mit.edu	36	1	119267700	119267700	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152380	exon5	c.G425A	p.R142H	.	.	.
NOTCH2	4853	broad.mit.edu	36	1	120264498	120264498	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024408	exon30	c.C5356T	p.R1786X	.	.	.
PRDM2	7799	broad.mit.edu	36	1	13980189	13980189	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007257	exon3	c.A2709C	p.E903D	.	.	.
LIX1L	128077	broad.mit.edu	36	1	144198725	144198725	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153713	exon2	c.G357T	p.K119N	.	.	.
ARNT	405	broad.mit.edu	36	1	149056515	149056515	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001197325	exon15	c.A1479C	p.T493T	.	.	.
SETDB1	9869	broad.mit.edu	36	1	149181722	149181722	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145415	exon6	c.C607T	p.R203X	.	.	.
POGZ	23126	broad.mit.edu	36	1	149650823	149650823	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145796	exon10	c.C1543T	p.R515W	.	.	.
TCHHL1	126637	broad.mit.edu	36	1	150324470	150324470	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008536	exon3	c.C2312A	p.S771Y	.	.	.
TCHHL1	126637	broad.mit.edu	36	1	150326594	150326594	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008536	exon3	c.A188G	p.D63G	.	.	.
TCHH	7062	broad.mit.edu	36	1	150348023	150348023	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007113	exon2	c.T4294A	p.F1432I	.	.	.
RPTN	126638	broad.mit.edu	36	1	150395035	150395035	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122965	exon3	c.T1164C	p.S388S	.	.	.
LCE3B	353143	broad.mit.edu	36	1	150853108	150853108	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178433	exon1	c.C198T	p.C66C	.	.	.
LCE1B	353132	broad.mit.edu	36	1	151051828	151051828	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178349	exon1	c.C282T	p.G94G	.	.	.
CRTC2	200186	broad.mit.edu	36	1	152191716	152191716	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181715	exon8	c.C657T	p.N219N	.	.	.
SLC39A1	27173	broad.mit.edu	36	1	152201413	152201413	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014437	exon4	c.C225T	p.F75F	.	.	.
TPM3	7170	broad.mit.edu	36	1	152409799	152409799	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001043351	exon6	c.G544T	p.E182X	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153716313	153716313	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018489	exon3	c.C2972A	p.T991N	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153716687	153716687	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018489	exon3	c.A2598G	p.P866P	.	.	.
YY1AP1	55249	broad.mit.edu	36	1	153897296	153897296	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198906	exon11	c.G1247A	p.G416D	.	.	.
RIT1	6016	broad.mit.edu	36	1	154136941	154136941	+	Silent	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006912	exon6	c.T522G	p.V174V	.	.	.
ARHGEF11	9826	broad.mit.edu	36	1	155179191	155179191	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198236	exon33	c.C3241T	p.R1081W	.	.	.
FCRL5	83416	broad.mit.edu	36	1	155760853	155760853	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031281	exon10	c.T2079G	p.F693L	.	.	.
FCRL2	79368	broad.mit.edu	36	1	155983159	155983159	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030764	exon12	c.G1518T	p.K506N	.	.	.
OR10T2	128360	broad.mit.edu	36	1	156635799	156635799	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004475	exon1	c.C82T	p.L28F	.	.	.
OR6Y1	391112	broad.mit.edu	36	1	156783757	156783757	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005189	exon1	c.C763A	p.L255I	.	.	.
OR10Z1	128368	broad.mit.edu	36	1	156842911	156842911	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004478	exon1	c.C59A	p.S20Y	.	.	.
MNDA	4332	broad.mit.edu	36	1	157078588	157078588	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002432	exon2	c.A21C	p.K7N	.	.	.
AGMAT	79814	broad.mit.edu	36	1	15782452	15782452	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024758	exon2	c.G298T	p.E100X	.	.	.
IGSF9	57549	broad.mit.edu	36	1	158163779	158163779	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135050	exon21	c.G3520A	p.E1174K	.	.	.
PEX19	5824	broad.mit.edu	36	1	158516604	158516604	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002857	exon6	c.A651C	p.K217N	.	.	.
FCGR3A	2214	broad.mit.edu	36	1	159784861	159784861	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127595	exon4	c.A293G	p.D98G	.	.	.
NOS1AP	9722	broad.mit.edu	36	1	160603632	160603632	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126060	exon2	c.C387T	p.C129C	.	.	.
C1orf226	400793	broad.mit.edu	36	1	160619691	160619691	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085375	exon2	c.T413C	p.L138P	.	.	.
DDR2	4921	broad.mit.edu	36	1	160997663	160997663	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014796	exon10	c.C894A	p.I298I	.	.	.
DDR2	4921	broad.mit.edu	36	1	161012190	161012190	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014796	exon16	c.G1981T	p.D661Y	.	.	.
CDK11A	728642	broad.mit.edu	36	1	1625154	1625154	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024011	exon17	c.C1880T	p.S627L	.	.	.
ALDH9A1	223	broad.mit.edu	36	1	163916531	163916531	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000696	exon5	c.C606A	p.V202V	.	.	.
POU2F1	5451	broad.mit.edu	36	1	165635104	165635104	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002697	exon12	c.A1327C	p.K443Q	.	.	.
RCSD1	92241	broad.mit.edu	36	1	165925959	165925959	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052862	exon4	c.C248T	p.S83L	.	.	.
ADCY10	55811	broad.mit.edu	36	1	166072369	166072369	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167749	exon20	c.C2652A	p.F884L	.	.	.
ADCY10	55811	broad.mit.edu	36	1	166132550	166132550	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167749	exon4	c.A187G	p.N63D	.	.	.
GPR161	23432	broad.mit.edu	36	1	166321566	166321566	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153832	exon8	c.G1417A	p.E473K	.	.	.
BLZF1	8548	broad.mit.edu	36	1	167614369	167614369	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003666	exon4	c.C646T	p.R216X	.	.	.
F5	2153	broad.mit.edu	36	1	167778504	167778504	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000130	exon13	c.G2448T	p.K816N	.	.	.
F5	2153	broad.mit.edu	36	1	167792714	167792714	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000130	exon6	c.C746T	p.A249V	.	.	.
F5	2153	broad.mit.edu	36	1	167818377	167818377	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000130	exon2	c.C166A	p.L56I	.	.	.
SELP	6403	broad.mit.edu	36	1	167852978	167852978	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003005	exon3	c.C393T	p.C131C	.	.	.
SELE	6401	broad.mit.edu	36	1	167969359	167969359	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000450	exon2	c.C19A	p.L7I	.	.	.
C1orf129	80133	broad.mit.edu	36	1	169207587	169207587	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025063	exon8	c.G555A	p.S185S	.	.	.
BAT2L2	23215	broad.mit.edu	36	1	169776495	169776495	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015172	exon16	c.T3260G	p.F1087C	.	.	.
DNM3	26052	broad.mit.edu	36	1	170268217	170268217	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015569	exon5	c.G642A	p.T214T	.	.	.
C1orf9	51430	broad.mit.edu	36	1	170811295	170811295	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014283	exon11	c.A1172C	p.K391T	.	.	.
C1orf9	51430	broad.mit.edu	36	1	170845693	170845693	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014283	exon24	c.G3436T	p.D1146Y	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171742793	171742793	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178527	exon25	c.T3050G	p.F1017C	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171809074	171809074	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178527	exon9	c.T916G	p.F306V	.	.	.
PADI1	29943	broad.mit.edu	36	1	17439818	17439818	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013358	exon15	c.C1734T	p.Y578Y	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	174792625	174792625	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020318	exon2	c.G544T	p.E182X	.	.	.
ASTN1	460	broad.mit.edu	36	1	175112347	175112347	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004319	exon21	c.G3412A	p.D1138N	.	.	.
C1orf49	84066	broad.mit.edu	36	1	176752412	176752412	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170723	exon5	c.G256A	p.E86K	.	.	.
ACBD6	84320	broad.mit.edu	36	1	178649158	178649158	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032360	exon5	c.C539T	p.S180L	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179972122	179972122	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000721	exon22	c.G3351T	p.K1117N	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180011863	180011863	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000721	exon38	c.C5143A	p.L1715I	.	.	.
GLUL	2752	broad.mit.edu	36	1	180620207	180620207	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002065	exon8	c.C1078A	p.L360I	.	.	.
RNASEL	6041	broad.mit.edu	36	1	180812116	180812116	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021133	exon6	c.A1937C	p.K646T	.	.	.
C1orf14	81626	broad.mit.edu	36	1	181175096	181175096	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030933	exon5	c.A914C	p.K305T	.	.	.
APOBEC4	403314	broad.mit.edu	36	1	181883993	181883993	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203454	exon2	c.C547T	p.R183W	.	.	.
GLT25D2	23127	broad.mit.edu	36	1	182205046	182205046	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015101	exon5	c.C812T	p.A271V	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184348687	184348687	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031935	exon72	c.G11110A	p.E3704K	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184363850	184363850	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031935	exon83	c.C12708A	p.F4236L	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184366394	184366394	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031935	exon85	c.A13172G	p.E4391G	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184373583	184373583	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031935	exon89	c.C13780A	p.L4594I	.	.	.
PRG4	10216	broad.mit.edu	36	1	184544322	184544322	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127709	exon5	c.G2569A	p.E857K	.	.	.
C1orf27	54953	broad.mit.edu	36	1	184627487	184627487	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164246	exon7	c.G556T	p.G186C	.	.	.
PLA2G4A	5321	broad.mit.edu	36	1	185129886	185129886	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024420	exon5	c.G298T	p.E100X	.	.	.
PLA2G4A	5321	broad.mit.edu	36	1	185168599	185168599	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024420	exon8	c.G640A	p.E214K	.	.	.
RGS21	431704	broad.mit.edu	36	1	190601763	190601763	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039152	exon5	c.C345A	p.I115I	.	.	.
RGS2	5997	broad.mit.edu	36	1	191046774	191046774	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002923	exon4	c.C315A	p.F105L	.	.	.
TROVE2	6738	broad.mit.edu	36	1	191311701	191311701	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001173524	exon3	c.C709T	p.R237C	.	.	.
CDC73	79577	broad.mit.edu	36	1	191371335	191371335	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024529	exon5	c.G416A	p.R139Q	.	.	.
KCNT2	343450	broad.mit.edu	36	1	194562473	194562473	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198503	exon19	c.A2273G	p.N758S	.	.	.
ZBTB41	360023	broad.mit.edu	36	1	195424075	195424075	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194314	exon4	c.C1516T	p.R506W	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196952515	196952515	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080921	exon10	c.C884A	p.S295X	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196977708	196977708	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080921	exon21	c.C2002T	p.L668F	.	.	.
KIF14	9928	broad.mit.edu	36	1	198850128	198850128	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014875	exon4	c.A1396C	p.I466L	.	.	.
IPO9	55705	broad.mit.edu	36	1	200106560	200106560	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018085	exon18	c.G2360A	p.R787H	.	.	.
PPP1R12B	4660	broad.mit.edu	36	1	200666485	200666485	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167857	exon7	c.C925T	p.R309X	.	.	.
MYBPH	4608	broad.mit.edu	36	1	201411094	201411094	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004997	exon2	c.G324A	p.E108E	.	.	.
SLC41A1	254428	broad.mit.edu	36	1	204045863	204045863	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173854	exon2	c.C330T	p.G110G	.	.	.
C4BPA	722	broad.mit.edu	36	1	205384677	205384677	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000715	exon12	c.G1786T	p.E596X	.	.	.
CR2	1380	broad.mit.edu	36	1	205715047	205715047	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001006658	exon14	c.A2579C	p.K860T	.	.	.
CR1	1378	broad.mit.edu	36	1	205820569	205820569	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000651	exon31	c.T5204C	p.V1735A	.	.	.
KCNH1	3756	broad.mit.edu	36	1	208923249	208923249	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002238	exon11	c.C2886A	p.S962R	.	.	.
INTS7	25896	broad.mit.edu	36	1	210260141	210260141	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199812	exon3	c.G317T	p.R106I	.	.	.
ANGEL2	90806	broad.mit.edu	36	1	211245247	211245247	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144567	exon5	c.A885C	p.K295N	.	.	.
CENPF	1063	broad.mit.edu	36	1	212881428	212881428	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016343	exon12	c.A3124C	p.K1042Q	.	.	.
CENPF	1063	broad.mit.edu	36	1	212892893	212892893	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016343	exon16	c.G8260T	p.E2754X	.	.	.
CENPF	1063	broad.mit.edu	36	1	212896989	212896989	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016343	exon18	c.A8576G	p.E2859G	.	.	.
CENPF	1063	broad.mit.edu	36	1	212897086	212897086	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016343	exon18	c.G8673A	p.Q2891Q	.	.	.
KCTD3	51133	broad.mit.edu	36	1	213817990	213817990	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016121	exon6	c.G340T	p.E114X	.	.	.
USH2A	7399	broad.mit.edu	36	1	213868951	213868951	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206933	exon71	c.G15347A	p.R5116H	.	.	.
USH2A	7399	broad.mit.edu	36	1	214286422	214286422	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206933	exon32	c.G6299A	p.G2100D	.	.	.
USH2A	7399	broad.mit.edu	36	1	214486789	214486789	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206933	exon13	c.G2570T	p.G857V	.	.	.
ESRRG	2104	broad.mit.edu	36	1	214759171	214759171	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206595	exon7	c.A1009G	p.K337E	.	.	.
MIA3	375056	broad.mit.edu	36	1	220902286	220902286	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198551	exon26	c.G5251A	p.D1751N	.	.	.
CAPN2	824	broad.mit.edu	36	1	221998516	221998516	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001748	exon3	c.A399C	p.E133D	.	.	.
DEGS1	8560	broad.mit.edu	36	1	222444337	222444337	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003676	exon2	c.G518A	p.R173Q	.	.	.
PRSS38	339501	broad.mit.edu	36	1	226100428	226100428	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183062	exon5	c.G877T	p.E293X	.	.	.
WNT3A	89780	broad.mit.edu	36	1	226305173	226305173	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033131	exon3	c.C507T	p.F169F	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226504445	226504445	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052843	exon14	c.G4190A	p.R1397Q	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226549296	226549296	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052843	exon43	c.C11588T	p.S3863F	.	.	.
NUP133	55746	broad.mit.edu	36	1	227708428	227708428	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018230	exon2	c.G283A	p.A95T	.	.	.
KIAA1383	54627	broad.mit.edu	36	1	231007536	231007536	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019090	exon1	c.A144C	p.Q48H	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231460520	231460520	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014801	exon5	c.C1711T	p.P571S	.	.	.
KDM1A	23028	broad.mit.edu	36	1	23229712	23229712	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009999	exon2	c.C515T	p.S172L	.	.	.
LYST	1130	broad.mit.edu	36	1	234021643	234021643	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000081	exon12	c.G4522T	p.D1508Y	.	.	.
HEATR1	55127	broad.mit.edu	36	1	234821944	234821944	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018072	exon11	c.C1394A	p.S465Y	.	.	.
RYR2	6262	broad.mit.edu	36	1	235930324	235930324	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001035	exon65	c.C9301T	p.L3101L	.	.	.
RYR2	6262	broad.mit.edu	36	1	236060533	236060533	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001035	exon103	c.G14736T	p.E4912D	.	.	.
FMN2	56776	broad.mit.edu	36	1	238353163	238353163	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020066	exon2	c.G1677A	p.E559E	.	.	.
KMO	8564	broad.mit.edu	36	1	239779630	239779630	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003679	exon3	c.G155T	p.R52I	.	.	.
WDR64	128025	broad.mit.edu	36	1	239917415	239917415	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144625	exon7	c.T839C	p.V280A	.	.	.
CEP170	9859	broad.mit.edu	36	1	241394267	241394267	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042405	exon12	c.C3324A	p.I1108I	.	.	.
C1orf101	257044	broad.mit.edu	36	1	242802375	242802375	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173807	exon11	c.T1628G	p.F543C	.	.	.
VN1R5	317705	broad.mit.edu	36	1	245486577	245486577	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173858	exon1	c.G581A	p.G194D	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245678351	245678351	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004895	exon9	c.T3033G	p.N1011K	.	.	.
TRIM58	25893	broad.mit.edu	36	1	246090622	246090622	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015431	exon2	c.G501T	p.K167N	.	.	.
OR2T33	391195	broad.mit.edu	36	1	246502817	246502817	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004695	exon1	c.A923G	p.N308S	.	.	.
OR2T33	391195	broad.mit.edu	36	1	246503305	246503305	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004695	exon1	c.G435A	p.S145S	.	.	.
OR2T4	127074	broad.mit.edu	36	1	246592502	246592502	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004696	exon1	c.C997A	p.L333M	.	.	.
OR2T1	26696	broad.mit.edu	36	1	246637022	246637022	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030904	exon1	c.C1104A	p.V368V	.	.	.
MAN1C1	57134	broad.mit.edu	36	1	25885594	25885594	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020379	exon2	c.G617A	p.G206D	.	.	.
PAFAH2	5051	broad.mit.edu	36	1	26188531	26188531	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000437	exon3	c.C239T	p.A80V	.	.	.
DHDDS	79947	broad.mit.edu	36	1	26659181	26659181	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024887	exon8	c.G724A	p.E242K	.	.	.
ARID1A	8289	broad.mit.edu	36	1	26978941	26978941	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006015	exon20	c.C5965T	p.R1989X	.	.	.
PIGV	55650	broad.mit.edu	36	1	26993235	26993235	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017837	exon3	c.C123T	p.F41F	.	.	.
C1orf38	9473	broad.mit.edu	36	1	28079071	28079071	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105556	exon3	c.G565T	p.D189Y	.	.	.
PRDM16	63976	broad.mit.edu	36	1	3318494	3318494	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022114	exon9	c.C1873A	p.L625M	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33981536	33981536	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052896	exon14	c.A1985G	p.H662R	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37119003	37119003	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000831	exon3	c.C369A	p.S123S	.	.	.
MACF1	23499	broad.mit.edu	36	1	39531875	39531875	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012090	exon19	c.C2166A	p.F722L	.	.	.
MACF1	23499	broad.mit.edu	36	1	39562525	39562525	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012090	exon35	c.C4325T	p.A1442V	.	.	.
MACF1	23499	broad.mit.edu	36	1	39565546	39565546	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012090	exon37	c.T4563C	p.L1521L	.	.	.
MACF1	23499	broad.mit.edu	36	1	39573661	39573661	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033044	exon1	c.T4134G	p.N1378K	.	.	.
MACF1	23499	broad.mit.edu	36	1	39589254	39589254	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012090	exon39	c.G4990A	p.A1664T	.	.	.
RLF	6018	broad.mit.edu	36	1	40477288	40477288	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012421	exon8	c.G4327T	p.E1443X	.	.	.
RLF	6018	broad.mit.edu	36	1	40477798	40477798	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012421	exon8	c.G4837A	p.E1613K	.	.	.
TMCO2	127391	broad.mit.edu	36	1	40489746	40489746	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008740	exon2	c.G442A	p.V148I	.	.	.
KCNQ4	9132	broad.mit.edu	36	1	41073283	41073283	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004700	exon12	c.C1671T	p.D557D	.	.	.
ZMYND12	84217	broad.mit.edu	36	1	42674775	42674775	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032257	exon5	c.A621C	p.G207G	.	.	.
KDM4A	9682	broad.mit.edu	36	1	43927287	43927287	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014663	exon13	c.C1971A	p.F657L	.	.	.
SLC6A9	6536	broad.mit.edu	36	1	44248996	44248996	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201649	exon3	c.G395A	p.R132H	.	.	.
KIF2C	11004	broad.mit.edu	36	1	44985655	44985655	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006845	exon3	c.G178T	p.D60Y	.	.	.
IPP	3652	broad.mit.edu	36	1	45952719	45952719	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005897	exon8	c.T1317G	p.I439M	.	.	.
IPP	3652	broad.mit.edu	36	1	45979205	45979205	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005897	exon3	c.C679T	p.R227X	.	.	.
CYP4Z1	199974	broad.mit.edu	36	1	47356187	47356187	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178134	exon12	c.T1512G	p.V504V	.	.	.
TTC39A	22996	broad.mit.edu	36	1	51547543	51547543	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144832	exon6	c.C478A	p.R160R	.	.	.
EPS15	2060	broad.mit.edu	36	1	51706810	51706810	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001981	exon5	c.C232T	p.R78C	.	.	.
ZFYVE9	9372	broad.mit.edu	36	1	52476668	52476668	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007324	exon4	c.G991T	p.E331X	.	.	.
C8A	731	broad.mit.edu	36	1	57146256	57146256	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000562	exon9	c.C1262A	p.S421Y	.	.	.
DAB1	1600	broad.mit.edu	36	1	57307635	57307635	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021080	exon10	c.G649T	p.E217X	.	.	.
NFIA	4774	broad.mit.edu	36	1	61326574	61326574	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145512	exon3	c.C328A	p.P110T	.	.	.
USP1	7398	broad.mit.edu	36	1	62688564	62688564	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017416	exon9	c.A1682C	p.K561T	.	.	.
ATG4C	84938	broad.mit.edu	36	1	63102387	63102387	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178221	exon11	c.G1346T	p.R449I	.	.	.
PGM1	5236	broad.mit.edu	36	1	63892669	63892669	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172818	exon10	c.C1597T	p.R533W	.	.	.
ROR1	4919	broad.mit.edu	36	1	64416319	64416319	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005012	exon9	c.C2007A	p.F669L	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64867628	64867628	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020925	exon5	c.C367A	p.L123I	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64902771	64902771	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020925	exon15	c.C1944A	p.F648L	.	.	.
LEPR	3953	broad.mit.edu	36	1	65875019	65875019	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002303	exon20	c.C3231A	p.I1077I	.	.	.
IL23R	149233	broad.mit.edu	36	1	67496771	67496771	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144701	exon11	c.A1262G	p.N421S	.	.	.
IL12RB2	3595	broad.mit.edu	36	1	67565032	67565032	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001559	exon4	c.T391C	p.S131P	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70276599	70276599	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020794	exon19	c.C2390T	p.S797L	.	.	.
LRRIQ3	127255	broad.mit.edu	36	1	74279698	74279698	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105659	exon7	c.C1505A	p.A502D	.	.	.
LRRIQ3	127255	broad.mit.edu	36	1	74347825	74347825	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105659	exon5	c.C708T	p.S236S	.	.	.
LRRIQ3	127255	broad.mit.edu	36	1	74421044	74421044	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105659	exon3	c.G339T	p.K113N	.	.	.
TNNI3K	51086	broad.mit.edu	36	1	74488948	74488948	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199327	exon6	c.G543T	p.K181N	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74811059	74811059	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002912	exon14	c.C2923A	p.L975I	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74845139	74845139	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002912	exon10	c.C1223A	p.S408Y	.	.	.
ACADM	34	broad.mit.edu	36	1	75970941	75970941	+	De_novo_Start_OutOfFrame	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000016	exon3	c.T143G	p.F48C	.	.	.
MSH4	4438	broad.mit.edu	36	1	76127581	76127581	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002440	exon16	c.G2165A	p.R722K	.	.	.
USP33	23032	broad.mit.edu	36	1	77966846	77966846	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015017	exon11	c.A950C	p.D317A	.	.	.
PER3	8863	broad.mit.edu	36	1	7809195	7809195	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016831	exon16	c.G2002T	p.E668X	.	.	.
PER3	8863	broad.mit.edu	36	1	7812488	7812488	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016831	exon18	c.T2867G	p.V956G	.	.	.
PTGFR	5737	broad.mit.edu	36	1	78731812	78731812	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000959	exon2	c.C796A	p.L266M	.	.	.
RPF1	80135	broad.mit.edu	36	1	84734235	84734235	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025065	exon7	c.G782A	p.R261H	.	.	.
MCOLN3	55283	broad.mit.edu	36	1	85260632	85260632	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018298	exon10	c.A1135C	p.T379P	.	.	.
WDR63	126820	broad.mit.edu	36	1	85319679	85319679	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145172	exon4	c.T278G	p.I93S	.	.	.
ZNHIT6	54680	broad.mit.edu	36	1	85944577	85944577	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170670	exon4	c.C655T	p.R219X	.	.	.
COL24A1	255631	broad.mit.edu	36	1	86363480	86363480	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152890	exon3	c.A1127C	p.N376T	.	.	.
ODF2L	57489	broad.mit.edu	36	1	86592815	86592815	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020729	exon16	c.G1705T	p.E569X	.	.	.
CLCA1	1179	broad.mit.edu	36	1	86711795	86711795	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001285	exon2	c.C270T	p.D90D	.	.	.
CLCA1	1179	broad.mit.edu	36	1	86732654	86732654	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001285	exon11	c.T1877G	p.V626G	.	.	.
GBP7	388646	broad.mit.edu	36	1	89370647	89370647	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207398	exon11	c.T1690G	p.F564V	.	.	.
HFM1	164045	broad.mit.edu	36	1	91554060	91554060	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017975	exon28	c.T3040G	p.F1014V	.	.	.
HFM1	164045	broad.mit.edu	36	1	91591293	91591293	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017975	exon15	c.C1734A	p.I578I	.	.	.
BRDT	676	broad.mit.edu	36	1	92202823	92202823	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207189	exon3	c.C244T	p.R82C	.	.	.
EPHX4	253152	broad.mit.edu	36	1	92280973	92280973	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173567	exon3	c.C323A	p.S108Y	.	.	.
ALG14	199857	broad.mit.edu	36	1	95303050	95303050	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144988	exon2	c.C248A	p.S83Y	.	.	.
DPYD	1806	broad.mit.edu	36	1	97336732	97336732	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000110	exon21	c.C2667A	p.I889I	.	.	.
LPPR4	9890	broad.mit.edu	36	1	99544235	99544235	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014839	exon7	c.G1373A	p.R458Q	.	.	.
NMNAT1	64802	broad.mit.edu	36	1	9965242	9965242	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022787	exon5	c.G736T	p.E246X	.	.	.
ELF3	1999	broad.mit.edu	36	1	200249689	200249689	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-3892-01	TCGA-AG-3892-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114309	exon8	c.915delC	p.F305fs	.	.	.
MMP13	4322	broad.mit.edu	36	11	102320240	102320240	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002427	exon10	c.C1381T	p.R461C	.	.	.
AASDHPPT	60496	broad.mit.edu	36	11	105467347	105467347	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015423	exon4	c.T626C	p.I209T	.	.	.
GUCY1A2	2977	broad.mit.edu	36	11	106354658	106354658	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000855	exon3	c.G384T	p.K128N	.	.	.
CWF19L2	143884	broad.mit.edu	36	11	106805176	106805176	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152434	exon8	c.A992C	p.K331T	.	.	.
ATM	472	broad.mit.edu	36	11	107657033	107657033	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000051	exon24	c.C3504T	p.C1168C	.	.	.
ATM	472	broad.mit.edu	36	11	107707855	107707855	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000051	exon52	c.T7669G	p.L2557V	.	.	.
EXPH5	23086	broad.mit.edu	36	11	107890168	107890168	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015065	exon6	c.C1276T	p.R426C	.	.	.
PPP2R1B	5519	broad.mit.edu	36	11	111123941	111123941	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181699	exon11	c.A1346C	p.E449A	.	.	.
ALG9	79796	broad.mit.edu	36	11	111216734	111216734	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077691	exon10	c.T514G	p.L172V	.	.	.
C11orf57	55216	broad.mit.edu	36	11	111458638	111458638	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001082969	exon6	c.A614C	p.K205T	.	.	.
ZW10	9183	broad.mit.edu	36	11	113114238	113114238	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004724	exon13	c.C1842T	p.D614D	.	.	.
ZBTB16	7704	broad.mit.edu	36	11	113440052	113440052	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006006	exon2	c.G820T	p.E274X	.	.	.
RNF214	257160	broad.mit.edu	36	11	116614820	116614820	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077239	exon3	c.C401A	p.S134Y	.	.	.
RNF214	257160	broad.mit.edu	36	11	116615780	116615780	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077239	exon4	c.G672T	p.K224N	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116815803	116815803	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020693	exon22	c.C4102T	p.R1368W	.	.	.
TMPRSS13	84000	broad.mit.edu	36	11	117284573	117284573	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077263	exon9	c.G1246A	p.A416T	.	.	.
IL10RA	3587	broad.mit.edu	36	11	117364411	117364411	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001558	exon2	c.G172T	p.E58X	.	.	.
SCN2B	6327	broad.mit.edu	36	11	117544013	117544013	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004588	exon3	c.G445T	p.E149X	.	.	.
MPZL2	10205	broad.mit.edu	36	11	117636006	117636006	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144765	exon4	c.G557T	p.R186I	.	.	.
MLL	4297	broad.mit.edu	36	11	117881712	117881712	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005933	exon27	c.T9886C	p.F3296L	.	.	.
VPS11	55823	broad.mit.edu	36	11	118449751	118449751	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021729	exon7	c.C1117T	p.R373X	.	.	.
MCAM	4162	broad.mit.edu	36	11	118686361	118686361	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006500	exon15	c.G1819A	p.E607K	.	.	.
USP2	9099	broad.mit.edu	36	11	118733424	118733424	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_171997	exon10	c.G961T	p.E321X	.	.	.
USP47	55031	broad.mit.edu	36	11	11926121	11926121	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017944	exon20	c.T2941G	p.L981V	.	.	.
SC5DL	6309	broad.mit.edu	36	11	120683196	120683196	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006918	exon5	c.T665G	p.F222C	.	.	.
CRTAM	56253	broad.mit.edu	36	11	122243936	122243936	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019604	exon9	c.G970A	p.E324K	.	.	.
OR10G9	219870	broad.mit.edu	36	11	123399029	123399029	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001953	exon1	c.G100A	p.V34M	.	.	.
OR8D2	283160	broad.mit.edu	36	11	123694483	123694483	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002918	exon1	c.C821A	p.S274Y	.	.	.
ROBO4	54538	broad.mit.edu	36	11	124270678	124270678	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019055	exon6	c.C921T	p.S307S	.	.	.
BARX2	8538	broad.mit.edu	36	11	128826318	128826318	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003658	exon4	c.G651A	p.E217E	.	.	.
TMEM45B	120224	broad.mit.edu	36	11	129232550	129232550	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138788	exon5	c.T703G	p.S235A	.	.	.
APLP2	334	broad.mit.edu	36	11	129484690	129484690	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001642	exon2	c.C262A	p.L88I	.	.	.
ZBTB44	29068	broad.mit.edu	36	11	129636533	129636533	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014155	exon2	c.C446A	p.S149Y	.	.	.
SNX19	399979	broad.mit.edu	36	11	130254800	130254800	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014758	exon10	c.T2775G	p.I925M	.	.	.
GLB1L3	112937	broad.mit.edu	36	11	133656537	133656537	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080407	exon4	c.A419G	p.N140S	.	.	.
PDE3B	5140	broad.mit.edu	36	11	14839435	14839435	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000922	exon14	c.C2833T	p.R945X	.	.	.
SOX6	55553	broad.mit.edu	36	11	16028023	16028023	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033326	exon11	c.G1289A	p.R430Q	.	.	.
ABCC8	6833	broad.mit.edu	36	11	17382652	17382652	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000352	exon28	c.C3540A	p.Y1180X	.	.	.
KCNC1	3746	broad.mit.edu	36	11	17714440	17714440	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004976	exon1	c.C315A	p.C105X	.	.	.
MRGPRX4	117196	broad.mit.edu	36	11	18152112	18152112	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054032	exon1	c.A733G	p.N245D	.	.	.
LDHA	3939	broad.mit.edu	36	11	18377590	18377590	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135239	exon3	c.G163A	p.E55K	.	.	.
ANO5	203859	broad.mit.edu	36	11	22199254	22199254	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142649	exon5	c.C213T	p.F71F	.	.	.
ANO3	63982	broad.mit.edu	36	11	26577819	26577819	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031418	exon17	c.C1818A	p.I606I	.	.	.
ANO3	63982	broad.mit.edu	36	11	26617347	26617347	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031418	exon21	c.C2124A	p.F708L	.	.	.
BBOX1	8424	broad.mit.edu	36	11	27103802	27103802	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003986	exon8	c.C862T	p.R288C	.	.	.
LGR4	55366	broad.mit.edu	36	11	27346811	27346811	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018490	exon18	c.T2035G	p.F679V	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29990551	29990551	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002233	exon2	c.G251T	p.R84M	.	.	.
FSHB	2488	broad.mit.edu	36	11	30211918	30211918	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000510	exon3	c.G385T	p.E129X	.	.	.
MPPED2	744	broad.mit.edu	36	11	30473465	30473465	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001584	exon3	c.G490A	p.D164N	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33584938	33584938	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012194	exon13	c.C4164T	p.N1388N	.	.	.
ELF5	2001	broad.mit.edu	36	11	34459055	34459055	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001422	exon6	c.G511A	p.D171N	.	.	.
TRIM44	54765	broad.mit.edu	36	11	35713553	35713553	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017583	exon4	c.G991A	p.D331N	.	.	.
RAG1	5896	broad.mit.edu	36	11	36551577	36551577	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000448	exon2	c.G147T	p.K49N	.	.	.
RAG1	5896	broad.mit.edu	36	11	36554323	36554323	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000448	exon2	c.G2893T	p.E965X	.	.	.
LRRC4C	57689	broad.mit.edu	36	11	40093335	40093335	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020929	exon2	c.G1084T	p.D362Y	.	.	.
ACCSL	390110	broad.mit.edu	36	11	44026239	44026239	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031854	exon1	c.A77G	p.Y26C	.	.	.
CHST1	8534	broad.mit.edu	36	11	45628305	45628305	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003654	exon4	c.G745A	p.D249N	.	.	.
PHF21A	51317	broad.mit.edu	36	11	45913850	45913850	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001101802	exon17	c.A1698G	p.K566K	.	.	.
PHF21A	51317	broad.mit.edu	36	11	45914628	45914628	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001101802	exon16	c.C1674T	p.Y558Y	.	.	.
DDB2	1643	broad.mit.edu	36	11	47216066	47216066	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000107	exon8	c.G1126A	p.D376N	.	.	.
ACP2	53	broad.mit.edu	36	11	47223863	47223863	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001131064	exon4	c.G396A	p.P132P	.	.	.
NUP160	23279	broad.mit.edu	36	11	47790333	47790333	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015231	exon17	c.A2100C	p.R700R	.	.	.
OR4X1	390113	broad.mit.edu	36	11	48242192	48242192	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004726	exon1	c.G204T	p.E68D	.	.	.
OR51T1	401665	broad.mit.edu	36	11	4860189	4860189	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004759	exon1	c.C565A	p.L189I	.	.	.
OR52A5	390054	broad.mit.edu	36	11	5110256	5110256	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005160	exon1	c.T193G	p.L65V	.	.	.
OR4C46	119749	broad.mit.edu	36	11	51372601	51372601	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004703	exon1	c.C744A	p.F248L	.	.	.
OR51V1	283111	broad.mit.edu	36	11	5178456	5178456	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004760	exon1	c.G51A	p.T17T	.	.	.
HBB	3043	broad.mit.edu	36	11	5204572	5204572	+	Missense_Mutation	SNP	G	T	T	rs35755331	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000518	exon2	c.C126A	p.F42L	.	.	.
HBD	3045	broad.mit.edu	36	11	5211986	5211986	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000519	exon2	c.C126A	p.F42L	.	.	.
OR4A16	81327	broad.mit.edu	36	11	54867496	54867496	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005274	exon1	c.G244T	p.D82Y	.	.	.
OR52H1	390067	broad.mit.edu	36	11	5523292	5523292	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005289	exon1	c.G38A	p.S13N	.	.	.
OR5F1	338674	broad.mit.edu	36	11	55518638	55518638	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003697	exon1	c.C40A	p.L14I	.	.	.
OR8K3	219473	broad.mit.edu	36	11	55843297	55843297	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005202	exon1	c.A939G	p.X313X	.	.	.
OR8K1	390157	broad.mit.edu	36	11	55870127	55870127	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002907	exon1	c.A37G	p.T13A	.	.	.
OR5M1	390168	broad.mit.edu	36	11	56136715	56136715	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004740	exon1	c.T840G	p.F280L	.	.	.
SERPING1	710	broad.mit.edu	36	11	57124214	57124214	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000062	exon3	c.C338A	p.S113Y	.	.	.
MED19	219541	broad.mit.edu	36	11	57229252	57229252	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153450	exon2	c.G243A	p.T81T	.	.	.
OR5B12	390191	broad.mit.edu	36	11	57963457	57963457	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004733	exon1	c.C744A	p.I248I	.	.	.
OR52E6	390078	broad.mit.edu	36	11	5819185	5819185	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005167	exon1	c.T519G	p.H173Q	.	.	.
OR52E4	390081	broad.mit.edu	36	11	5863032	5863032	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005165	exon1	c.G934T	p.E312X	.	.	.
OR5AN1	390195	broad.mit.edu	36	11	58889179	58889179	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004729	exon1	c.C672T	p.I224I	.	.	.
MS4A2	2206	broad.mit.edu	36	11	59617579	59617579	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000139	exon5	c.C509T	p.T170I	.	.	.
MS4A7	58475	broad.mit.edu	36	11	59913584	59913584	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206938	exon4	c.C350T	p.S117L	.	.	.
MS4A14	84689	broad.mit.edu	36	11	59924483	59924483	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032597	exon3	c.G298A	p.D100N	.	.	.
TUT1	64852	broad.mit.edu	36	11	62099184	62099184	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022830	exon9	c.C2697A	p.F899L	.	.	.
RTN3	10313	broad.mit.edu	36	11	63244990	63244990	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201428	exon2	c.G2383T	p.E795X	.	.	.
PYGM	5837	broad.mit.edu	36	11	64276013	64276013	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164716	exon12	c.G1463A	p.R488Q	.	.	.
FAU	2197	broad.mit.edu	36	11	64644796	64644796	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001997	exon5	c.A335G	p.Y112C	.	.	.
ACTN3	89	broad.mit.edu	36	11	66075633	66075633	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001104	exon3	c.T321G	p.V107V	.	.	.
RBM4	5936	broad.mit.edu	36	11	66164085	66164085	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198843	exon2	c.C327T	p.I109I	.	.	.
PPP6R3	55291	broad.mit.edu	36	11	68082614	68082614	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164164	exon9	c.G736T	p.E246X	.	.	.
IGHMBP2	3508	broad.mit.edu	36	11	68441826	68441826	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002180	exon7	c.G959A	p.R320Q	.	.	.
MRGPRD	116512	broad.mit.edu	36	11	68504446	68504446	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198923	exon1	c.C586T	p.L196L	.	.	.
ZNF214	7761	broad.mit.edu	36	11	6978285	6978285	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013249	exon3	c.G1205A	p.R402Q	.	.	.
OR2AT4	341152	broad.mit.edu	36	11	74477878	74477878	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005285	exon1	c.G529A	p.A177T	.	.	.
PAK1	5058	broad.mit.edu	36	11	76732575	76732575	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002576	exon10	c.T935G	p.I312S	.	.	.
RAB30	27314	broad.mit.edu	36	11	82385988	82385988	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014488	exon3	c.G19T	p.D7Y	.	.	.
SYTL2	54843	broad.mit.edu	36	11	85116594	85116594	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032943	exon8	c.T1452C	p.R484R	.	.	.
CCDC83	220047	broad.mit.edu	36	11	85299999	85299999	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173556	exon8	c.G700T	p.E234X	.	.	.
NOX4	50507	broad.mit.edu	36	11	88775192	88775192	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016931	exon9	c.T796G	p.F266V	.	.	.
FOLH1B	219595	broad.mit.edu	36	11	89046950	89046950	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153696	exon6	c.G349T	p.E117X	.	.	.
SCUBE2	57758	broad.mit.edu	36	11	9025637	9025637	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020974	exon16	c.G1844A	p.R615H	.	.	.
FAT3	120114	broad.mit.edu	36	11	92255931	92255931	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008781	exon23	c.G12661A	p.V4221I	.	.	.
CCDC67	159989	broad.mit.edu	36	11	92810447	92810447	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181645	exon14	c.C1729A	p.L577I	.	.	.
C11orf54	28970	broad.mit.edu	36	11	93128138	93128138	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014039	exon6	c.T445G	p.C149G	.	.	.
MRE11A	4361	broad.mit.edu	36	11	93843439	93843439	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005591	exon9	c.G863A	p.R288H	.	.	.
PIWIL4	143689	broad.mit.edu	36	11	93990843	93990843	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152431	exon17	c.A2090G	p.D697G	.	.	.
ENDOD1	23052	broad.mit.edu	36	11	94501769	94501769	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015036	exon2	c.G881A	p.R294Q	.	.	.
MAML2	84441	broad.mit.edu	36	11	95351778	95351778	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032427	exon5	c.C3453A	p.I1151I	.	.	.
CCDC82	79780	broad.mit.edu	36	11	95726496	95726496	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024725	exon10	c.T1597G	p.F533V	.	.	.
CCDC82	79780	broad.mit.edu	36	11	95756254	95756254	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024725	exon5	c.A818C	p.D273A	.	.	.
CNTN5	53942	broad.mit.edu	36	11	99220867	99220867	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175566	exon4	c.G129T	p.K43N	.	.	.
CNTN5	53942	broad.mit.edu	36	11	99221037	99221037	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175566	exon5	c.G188A	p.R63Q	.	.	.
GRIK2	2898	broad.mit.edu	36	6	101953958	101953958	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021956	exon1	c.T84G	p.Y28X	.	.	.
GRIK2	2898	broad.mit.edu	36	6	102610093	102610093	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021956	exon15	c.T2507G	p.F836C	.	.	.
GRIK2	2898	broad.mit.edu	36	6	102623061	102623061	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021956	exon16	c.T2709C	p.G903G	.	.	.
BVES	11149	broad.mit.edu	36	6	105671289	105671289	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007073	exon6	c.G796T	p.D266Y	.	.	.
BVES	11149	broad.mit.edu	36	6	105688137	105688137	+	Nonsense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007073	exon2	c.T9G	p.Y3X	.	.	.
BEND3	57673	broad.mit.edu	36	6	107526474	107526474	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080450	exon4	c.G214A	p.V72M	.	.	.
SCML4	256380	broad.mit.edu	36	6	108148719	108148719	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198081	exon6	c.C854T	p.A285V	.	.	.
NR2E1	7101	broad.mit.edu	36	6	108609490	108609490	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003269	exon8	c.G937A	p.A313T	.	.	.
CDC40	51362	broad.mit.edu	36	6	110640145	110640145	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015891	exon7	c.C844A	p.H282N	.	.	.
SLC22A16	85413	broad.mit.edu	36	6	110870326	110870326	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033125	exon4	c.C997T	p.P333S	.	.	.
RFPL4B	442247	broad.mit.edu	36	6	112778237	112778237	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013734	exon3	c.G634T	p.D212Y	.	.	.
FRK	2444	broad.mit.edu	36	6	116396500	116396500	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002031	exon3	c.G562A	p.E188K	.	.	.
RFX6	222546	broad.mit.edu	36	6	117347124	117347124	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173560	exon11	c.G1154A	p.R385Q	.	.	.
RFX6	222546	broad.mit.edu	36	6	117352528	117352528	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173560	exon15	c.C1559A	p.S520Y	.	.	.
MCM9	254394	broad.mit.edu	36	6	119286724	119286724	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153255	exon3	c.C572T	p.S191L	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119343197	119343197	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024581	exon10	c.G2106T	p.Q702H	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119374223	119374223	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024581	exon6	c.G1603T	p.E535X	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119387587	119387587	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024581	exon2	c.C250A	p.L84I	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121619097	121619097	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152730	exon16	c.G1767A	p.S589S	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121642055	121642055	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152730	exon15	c.T1644C	p.H548H	.	.	.
FABP7	2173	broad.mit.edu	36	6	123146592	123146592	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001446	exon4	c.G380A	p.R127H	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129836092	129836092	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079823	exon52	c.G7341A	p.E2447E	.	.	.
L3MBTL3	84456	broad.mit.edu	36	6	130431182	130431182	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032438	exon12	c.G1015T	p.E339X	.	.	.
ENPP1	5167	broad.mit.edu	36	6	132249551	132249551	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006208	exon24	c.C2601T	p.S867S	.	.	.
STX7	8417	broad.mit.edu	36	6	132835170	132835170	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003569	exon4	c.G193T	p.E65X	.	.	.
TAAR5	9038	broad.mit.edu	36	6	132951530	132951530	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003967	exon1	c.G989A	p.R330H	.	.	.
SGK1	6446	broad.mit.edu	36	6	134680282	134680282	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143676	exon1	c.A10G	p.K4E	.	.	.
AHI1	54806	broad.mit.edu	36	6	135720993	135720993	+	Silent	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017651	exon23	c.T3135G	p.P1045P	.	.	.
MAP7	9053	broad.mit.edu	36	6	136735405	136735405	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198614	exon9	c.C869T	p.S290L	.	.	.
SIRT5	23408	broad.mit.edu	36	6	13696557	13696557	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193267	exon4	c.G131A	p.R44Q	.	.	.
ECT2L	345930	broad.mit.edu	36	6	139248347	139248347	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077706	exon17	c.G2040T	p.M680I	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143134925	143134925	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006734	exon5	c.C2644T	p.R882W	.	.	.
PEX3	8504	broad.mit.edu	36	6	143841981	143841981	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003630	exon10	c.C894A	p.F298L	.	.	.
LTV1	84946	broad.mit.edu	36	6	144225928	144225928	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032860	exon10	c.C1129T	p.R377X	.	.	.
UTRN	7402	broad.mit.edu	36	6	144884869	144884869	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007124	exon39	c.C5602T	p.L1868F	.	.	.
SASH1	23328	broad.mit.edu	36	6	148888152	148888152	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015278	exon11	c.G1242A	p.T414T	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152779477	152779477	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033071	exon41	c.C5809A	p.L1937I	.	.	.
RGS17	26575	broad.mit.edu	36	6	153374504	153374504	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012419	exon5	c.G531A	p.Q177Q	.	.	.
TAGAP	117289	broad.mit.edu	36	6	159377169	159377169	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054114	exon10	c.C1874T	p.A625V	.	.	.
WTAP	9589	broad.mit.edu	36	6	160080015	160080015	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004906	exon3	c.C34T	p.R12X	.	.	.
TCP1	6950	broad.mit.edu	36	6	160120067	160120067	+	Read-through	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030752	exon12	c.A1671C	p.X557C	.	.	.
MAS1	4142	broad.mit.edu	36	6	160248339	160248339	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002377	exon1	c.A362G	p.Y121C	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160388919	160388919	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000876	exon17	c.G2335A	p.D779N	.	.	.
MAP3K4	4216	broad.mit.edu	36	6	161447583	161447583	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006724	exon19	c.C3754T	p.R1252X	.	.	.
PARK2	5071	broad.mit.edu	36	6	162395128	162395128	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004562	exon5	c.C603T	p.C201C	.	.	.
C6orf118	168090	broad.mit.edu	36	6	165643048	165643048	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144980	exon1	c.G18A	p.E6E	.	.	.
KIF25	3834	broad.mit.edu	36	6	168183612	168183612	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030615	exon6	c.G513A	p.S171S	.	.	.
HIST1H2BB	3018	broad.mit.edu	36	6	26151567	26151567	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021062	exon1	c.C298T	p.R100C	.	.	.
HFE	3077	broad.mit.edu	36	6	26199183	26199183	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139004	exon2	c.G212A	p.R71Q	.	.	.
BTN3A2	11118	broad.mit.edu	36	6	26478768	26478768	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001197249	exon4	c.T547C	p.S183P	.	.	.
ZSCAN16	80345	broad.mit.edu	36	6	28201446	28201446	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025231	exon2	c.C246T	p.D82D	.	.	.
ZKSCAN4	387032	broad.mit.edu	36	6	28321555	28321555	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019110	exon5	c.G956A	p.R319Q	.	.	.
GPX6	257202	broad.mit.edu	36	6	28580160	28580160	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182701	exon5	c.A554C	p.K185T	.	.	.
OR12D2	26529	broad.mit.edu	36	6	29473127	29473127	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013936	exon1	c.C672A	p.F224L	.	.	.
ZFP57	346171	broad.mit.edu	36	6	29751188	29751188	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001109809	exon3	c.A306C	p.E102D	.	.	.
HLA-G	3135	broad.mit.edu	36	6	29904453	29904453	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002127	exon4	c.C498T	p.I166I	.	.	.
C6orf136	221545	broad.mit.edu	36	6	30726777	30726777	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161376	exon3	c.G1045A	p.D349N	.	.	.
TUBB2A	7280	broad.mit.edu	36	6	3099139	3099139	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001069	exon4	c.A1295G	p.E432G	.	.	.
MSH5	4439	broad.mit.edu	36	6	31836461	31836461	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025259	exon20	c.T1879G	p.F627V	.	.	.
NEU1	4758	broad.mit.edu	36	6	31937102	31937102	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000434	exon3	c.C457A	p.L153I	.	.	.
RDBP	7936	broad.mit.edu	36	6	32030827	32030827	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002904	exon6	c.C392A	p.S131Y	.	.	.
TNXB	7148	broad.mit.edu	36	6	32154977	32154977	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019105	exon11	c.C4186G	p.Q1396E	.	.	.
TNXB	7148	broad.mit.edu	36	6	32173834	32173834	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019105	exon2	c.T120C	p.P40P	.	.	.
HLA-DQA2	3118	broad.mit.edu	36	6	32820984	32820984	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020056	exon2	c.A153C	p.E51D	.	.	.
PSMB8	5696	broad.mit.edu	36	6	32916719	32916719	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004159	exon6	c.C814A	p.Q272K	.	.	.
HLA-DMB	3109	broad.mit.edu	36	6	33014557	33014557	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002118	exon2	c.G219A	p.A73A	.	.	.
HLA-DPB1	3115	broad.mit.edu	36	6	33156458	33156458	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002121	exon2	c.C132A	p.C44X	.	.	.
COL11A2	1302	broad.mit.edu	36	6	33251382	33251382	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080681	exon28	c.G2065A	p.G689R	.	.	.
RXRB	6257	broad.mit.edu	36	6	33273631	33273631	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021976	exon4	c.G706T	p.D236Y	.	.	.
RPS18	6222	broad.mit.edu	36	6	33352195	33352195	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022551	exon6	c.A433G	p.T145A	.	.	.
RGL2	5863	broad.mit.edu	36	6	33367917	33367917	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004761	exon18	c.A2274G	p.G758G	.	.	.
TAPBP	6892	broad.mit.edu	36	6	33380183	33380183	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172208	exon5	c.T1079C	p.V360A	.	.	.
KIFC1	3833	broad.mit.edu	36	6	33482400	33482400	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002263	exon9	c.T1881C	p.S627S	.	.	.
PPARD	5467	broad.mit.edu	36	6	35501716	35501716	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171818	exon9	c.T1208C	p.M403T	.	.	.
PI16	221476	broad.mit.edu	36	6	37037286	37037286	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153370	exon3	c.G475A	p.E159K	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38918646	38918646	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001371	exon33	c.G4183T	p.D1395Y	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38997222	38997222	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001371	exon69	c.G9973T	p.V3325L	.	.	.
DNAH8	1769	broad.mit.edu	36	6	39027225	39027225	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001371	exon80	c.A11751G	p.G3917G	.	.	.
GLP1R	2740	broad.mit.edu	36	6	39161675	39161675	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002062	exon13	c.C1240T	p.R414W	.	.	.
KCNK16	83795	broad.mit.edu	36	6	39392115	39392115	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135106	exon5	c.C743T	p.A248V	.	.	.
ZNF318	24149	broad.mit.edu	36	6	43414975	43414975	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014345	exon10	c.C4739G	p.A1580G	.	.	.
XPO5	57510	broad.mit.edu	36	6	43624041	43624041	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020750	exon18	c.G1995A	p.Q665Q	.	.	.
CAPN11	11131	broad.mit.edu	36	6	44256320	44256320	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007058	exon16	c.C1689A	p.V563V	.	.	.
CYP39A1	51302	broad.mit.edu	36	6	46728128	46728128	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016593	exon1	c.G151T	p.E51X	.	.	.
TDRD6	221400	broad.mit.edu	36	6	46764926	46764926	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010870	exon1	c.C1102T	p.R368X	.	.	.
GPR110	266977	broad.mit.edu	36	6	47096465	47096465	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153840	exon7	c.G572T	p.R191I	.	.	.
PGK2	5232	broad.mit.edu	36	6	49861672	49861672	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138733	exon1	c.C1188T	p.G396G	.	.	.
PGK2	5232	broad.mit.edu	36	6	49862814	49862814	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138733	exon1	c.G46T	p.G16W	.	.	.
TFAP2D	83741	broad.mit.edu	36	6	50794764	50794764	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172238	exon3	c.C540T	p.G180G	.	.	.
GSTA5	221357	broad.mit.edu	36	6	52806934	52806934	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153699	exon5	c.G378T	p.E126D	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56031938	56031938	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030820	exon29	c.T2670C	p.G890G	.	.	.
DST	667	broad.mit.edu	36	6	56528113	56528113	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015548	exon41	c.A7256G	p.E2419G	.	.	.
BAI3	577	broad.mit.edu	36	6	69741876	69741876	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001704	exon10	c.C1657A	p.L553I	.	.	.
FAM135A	57579	broad.mit.edu	36	6	71241930	71241930	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001162529	exon4	c.A254G	p.D85G	.	.	.
EEF1A1	1915	broad.mit.edu	36	6	74284605	74284605	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001402	exon7	c.A1133C	p.K378T	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75882341	75882341	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004370	exon49	c.G7576A	p.A2526T	.	.	.
LCA5	167691	broad.mit.edu	36	6	80253737	80253737	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181714	exon9	c.G1797T	p.E599D	.	.	.
LCA5	167691	broad.mit.edu	36	6	80260178	80260178	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181714	exon5	c.G729A	p.S243S	.	.	.
LCA5	167691	broad.mit.edu	36	6	80279699	80279699	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181714	exon4	c.G669T	p.K223N	.	.	.
ELOVL4	6785	broad.mit.edu	36	6	80685891	80685891	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022726	exon5	c.C634A	p.L212I	.	.	.
IBTK	25998	broad.mit.edu	36	6	82977941	82977941	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015525	exon14	c.C2359A	p.L787I	.	.	.
CYB5R4	51167	broad.mit.edu	36	6	84701097	84701097	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016230	exon11	c.C879A	p.F293L	.	.	.
SYNCRIP	10492	broad.mit.edu	36	6	86381371	86381371	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159675	exon10	c.G1589A	p.R530H	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88022873	88022873	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015021	exon8	c.C2807T	p.A936V	.	.	.
C6orf165	154313	broad.mit.edu	36	6	88180334	88180334	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031743	exon4	c.C280T	p.R94X	.	.	.
C6orf165	154313	broad.mit.edu	36	6	88182157	88182157	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031743	exon5	c.G318T	p.E106D	.	.	.
RARS2	57038	broad.mit.edu	36	6	88297358	88297358	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020320	exon9	c.G634A	p.E212K	.	.	.
AKIRIN2	55122	broad.mit.edu	36	6	88448164	88448164	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018064	exon2	c.G272A	p.R91Q	.	.	.
RNGTT	8732	broad.mit.edu	36	6	89707599	89707599	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003800	exon2	c.G84A	p.K28K	.	.	.
PNRC1	10957	broad.mit.edu	36	6	89850436	89850436	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006813	exon2	c.G786A	p.S262S	.	.	.
RRAGD	58528	broad.mit.edu	36	6	90145665	90145665	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021244	exon4	c.C756A	p.I252I	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90633438	90633438	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001137667	exon8	c.T3708A	p.N1236K	.	.	.
EPHA7	2045	broad.mit.edu	36	6	94177163	94177163	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004440	exon3	c.G609T	p.K203N	.	.	.
EPHA7	2045	broad.mit.edu	36	6	94177544	94177544	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004440	exon3	c.C228A	p.V76V	.	.	.
KIAA0776	23376	broad.mit.edu	36	6	97079928	97079928	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015323	exon4	c.G287T	p.R96I	.	.	.
USP45	85015	broad.mit.edu	36	6	99998167	99998167	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080481	exon15	c.C2068A	p.H690N	.	.	.
MYH13	8735	broad.mit.edu	36	17	10168070	10168070	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003802	exon23	c.G2928T	p.E976D	.	.	.
MYH2	4620	broad.mit.edu	36	17	10384720	10384720	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100112	exon11	c.G924T	p.T308T	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11496857	11496857	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001372	exon14	c.G2408T	p.R803I	.	.	.
ZNF624	57547	broad.mit.edu	36	17	16467736	16467736	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020787	exon6	c.T1189G	p.F397V	.	.	.
FLII	2314	broad.mit.edu	36	17	18092748	18092748	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002018	exon18	c.G2031T	p.E677D	.	.	.
KCNJ12	3768	broad.mit.edu	36	17	21260276	21260276	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021012	exon3	c.G1029A	p.S343S	.	.	.
SRR	63826	broad.mit.edu	36	17	2171356	2171356	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021947	exon5	c.G406T	p.E136X	.	.	.
TSR1	55720	broad.mit.edu	36	17	2184749	2184749	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018128	exon5	c.C748T	p.R250W	.	.	.
METT10D	79066	broad.mit.edu	36	17	2291565	2291565	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024086	exon7	c.C767T	p.A256V	.	.	.
EFCAB5	374786	broad.mit.edu	36	17	25320160	25320160	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145053	exon4	c.T248G	p.L83R	.	.	.
CPD	1362	broad.mit.edu	36	17	25813575	25813575	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199775	exon20	c.T3137G	p.I1046R	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26185964	26185964	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024857	exon2	c.A739C	p.N247H	.	.	.
C17orf42	79736	broad.mit.edu	36	17	26250568	26250568	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024683	exon4	c.G828T	p.M276I	.	.	.
NF1	4763	broad.mit.edu	36	17	26581017	26581017	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000267	exon22	c.A2889C	p.Q963H	.	.	.
EVI2B	2124	broad.mit.edu	36	17	26655506	26655506	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006495	exon2	c.T1248G	p.D416E	.	.	.
EVI2B	2124	broad.mit.edu	36	17	26656154	26656154	+	Nonsense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006495	exon2	c.T600G	p.Y200X	.	.	.
SUZ12	23512	broad.mit.edu	36	17	27334133	27334133	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015355	exon9	c.G920A	p.R307H	.	.	.
C17orf75	64149	broad.mit.edu	36	17	27683054	27683054	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022344	exon10	c.T1032G	p.H344Q	.	.	.
MYO1D	4642	broad.mit.edu	36	17	28118862	28118862	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015194	exon7	c.G736A	p.E246K	.	.	.
CCT6B	10693	broad.mit.edu	36	17	30293617	30293617	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193529	exon6	c.A773C	p.K258T	.	.	.
SLFN5	162394	broad.mit.edu	36	17	30615411	30615411	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144975	exon4	c.G1235A	p.R412H	.	.	.
SLFN11	91607	broad.mit.edu	36	17	30703854	30703854	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001104589	exon6	c.G2340T	p.K780N	.	.	.
SLFN13	146857	broad.mit.edu	36	17	30792090	30792090	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144682	exon6	c.A2331C	p.T777T	.	.	.
GAS2L2	246176	broad.mit.edu	36	17	31097335	31097335	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139285	exon6	c.G1294A	p.A432T	.	.	.
GPR179	440435	broad.mit.edu	36	17	33739329	33739329	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004334	exon11	c.G3649T	p.E1217X	.	.	.
TRPV3	162514	broad.mit.edu	36	17	3374349	3374349	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145068	exon13	c.G1636T	p.E546X	.	.	.
FBXO47	494188	broad.mit.edu	36	17	34372639	34372639	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008777	exon2	c.T166G	p.L56V	.	.	.
PLXDC1	57125	broad.mit.edu	36	17	34488923	34488923	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020405	exon10	c.G1010A	p.R337H	.	.	.
CDK12	51755	broad.mit.edu	36	17	34919488	34919488	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016507	exon7	c.C2614T	p.Q872X	.	.	.
IKZF3	22806	broad.mit.edu	36	17	35202501	35202501	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183230	exon4	c.A375G	p.L125L	.	.	.
TOP2A	7153	broad.mit.edu	36	17	35810340	35810340	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001067	exon22	c.A2766C	p.E922D	.	.	.
CCR7	1236	broad.mit.edu	36	17	35965497	35965497	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001838	exon3	c.C160T	p.R54W	.	.	.
KRT37	8688	broad.mit.edu	36	17	36834015	36834015	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003770	exon1	c.G287A	p.G96D	.	.	.
KRT9	3857	broad.mit.edu	36	17	36978156	36978156	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000226	exon6	c.C1178T	p.A393V	.	.	.
TTC25	83538	broad.mit.edu	36	17	37348448	37348448	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031421	exon6	c.C738T	p.Y246Y	.	.	.
DHX58	79132	broad.mit.edu	36	17	37510579	37510579	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024119	exon10	c.G1384T	p.E462X	.	.	.
RND2	8153	broad.mit.edu	36	17	38433674	38433674	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005440	exon4	c.G371A	p.R124Q	.	.	.
ZZEF1	23140	broad.mit.edu	36	17	3909284	3909284	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015113	exon31	c.C4933T	p.R1645X	.	.	.
NAGS	162417	broad.mit.edu	36	17	39441442	39441442	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153006	exon7	c.G1552A	p.A518T	.	.	.
MAP3K14	9020	broad.mit.edu	36	17	40722394	40722394	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003954	exon3	c.A317C	p.K106T	.	.	.
MAPT	4137	broad.mit.edu	36	17	41395563	41395563	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016834	exon2	c.C24T	p.F8F	.	.	.
CDC27	996	broad.mit.edu	36	17	42571111	42571111	+	Missense_Mutation	SNP	G	A	A	rs2871714	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114091	exon13	c.C1715T	p.S572L	.	.	.
ITGB3	3690	broad.mit.edu	36	17	42716952	42716952	+	Missense_Mutation	SNP	G	A	A	rs5917	by-cluster,by-frequency,by-hapmap	TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000212	exon4	c.G506A	p.R169Q	.	.	.
C17orf57	124989	broad.mit.edu	36	17	42793850	42793850	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152347	exon10	c.A769G	p.I257V	.	.	.
MYST2	11143	broad.mit.edu	36	17	45230854	45230854	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007067	exon4	c.G515A	p.R172H	.	.	.
TOB1	10140	broad.mit.edu	36	17	46295589	46295589	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005749	exon1	c.A789C	p.K263N	.	.	.
SPAG9	9043	broad.mit.edu	36	17	46426213	46426213	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003971	exon18	c.T2267G	p.V756G	.	.	.
GP1BA	2811	broad.mit.edu	36	17	4777270	4777270	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000173	exon2	c.G591A	p.E197E	.	.	.
KIF2B	84643	broad.mit.edu	36	17	49256812	49256812	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032559	exon1	c.G1419T	p.K473N	.	.	.
ZFP3	124961	broad.mit.edu	36	17	4936273	4936273	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153018	exon2	c.G750T	p.E250D	.	.	.
USP6	9098	broad.mit.edu	36	17	4992670	4992670	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004505	exon22	c.A2527G	p.T843A	.	.	.
STXBP4	252983	broad.mit.edu	36	17	50479455	50479455	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178509	exon12	c.T952G	p.L318V	.	.	.
NUP88	4927	broad.mit.edu	36	17	5249240	5249240	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002532	exon6	c.C905T	p.A302V	.	.	.
MPO	4353	broad.mit.edu	36	17	53708036	53708036	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000250	exon8	c.G1231A	p.E411K	.	.	.
NLRP1	22861	broad.mit.edu	36	17	5402526	5402526	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033007	exon4	c.C2214T	p.F738F	.	.	.
NLRP1	22861	broad.mit.edu	36	17	5402853	5402853	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033007	exon4	c.C1887A	p.F629L	.	.	.
PPM1E	22843	broad.mit.edu	36	17	54404983	54404983	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014906	exon6	c.G1125T	p.K375N	.	.	.
PPM1E	22843	broad.mit.edu	36	17	54412700	54412700	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014906	exon7	c.G1794T	p.K598N	.	.	.
C17orf71	55181	broad.mit.edu	36	17	54642925	54642925	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018149	exon1	c.C731G	p.A244G	.	.	.
C17orf71	55181	broad.mit.edu	36	17	54643123	54643123	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018149	exon1	c.G929T	p.R310I	.	.	.
USP32	84669	broad.mit.edu	36	17	55615538	55615538	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032582	exon31	c.T3893G	p.I1298S	.	.	.
DCAF7	10238	broad.mit.edu	36	17	59009564	59009564	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005828	exon2	c.T140C	p.V47A	.	.	.
DDX42	11325	broad.mit.edu	36	17	59240730	59240730	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203499	exon11	c.C1231T	p.R411X	.	.	.
FTSJ3	117246	broad.mit.edu	36	17	59256221	59256221	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017647	exon8	c.C630A	p.F210L	.	.	.
GH1	2688	broad.mit.edu	36	17	59349482	59349482	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022560	exon2	c.G127A	p.A43T	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59376689	59376689	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000334	exon19	c.G3483T	p.M1161I	.	.	.
CCDC45	90799	broad.mit.edu	36	17	59958497	59958497	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138363	exon14	c.C1567T	p.R523C	.	.	.
RGS9	8787	broad.mit.edu	36	17	60634527	60634527	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003835	exon16	c.C1229A	p.S410Y	.	.	.
NOL11	25926	broad.mit.edu	36	17	63164232	63164232	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015462	exon12	c.T1365G	p.C455W	.	.	.
BPTF	2186	broad.mit.edu	36	17	63346601	63346601	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182641	exon13	c.G5437A	p.E1813K	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64392082	64392082	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007168	exon26	c.T3480C	p.F1160F	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64498610	64498610	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080283	exon29	c.G3800A	p.R1267K	.	.	.
KIAA0753	9851	broad.mit.edu	36	17	6467096	6467096	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014804	exon6	c.C934T	p.R312W	.	.	.
ABCA10	10349	broad.mit.edu	36	17	64695541	64695541	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080282	exon20	c.C2206A	p.L736I	.	.	.
TEKT1	83659	broad.mit.edu	36	17	6644956	6644956	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053285	exon7	c.A883C	p.N295H	.	.	.
GPS2	2874	broad.mit.edu	36	17	7158347	7158347	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004489	exon4	c.C304T	p.R102X	.	.	.
ST6GALNAC2	10610	broad.mit.edu	36	17	72086446	72086446	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006456	exon2	c.C173T	p.S58F	.	.	.
TNRC6C	57690	broad.mit.edu	36	17	73600769	73600769	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018996	exon16	c.C4131A	p.I1377I	.	.	.
FXR2	9513	broad.mit.edu	36	17	7437508	7437508	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004860	exon12	c.G1268A	p.R423Q	.	.	.
SHBG	6462	broad.mit.edu	36	17	7476022	7476022	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040	exon6	c.G816T	p.E272D	.	.	.
RPTOR	57521	broad.mit.edu	36	17	76318972	76318972	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020761	exon5	c.C525T	p.I175I	.	.	.
RPTOR	57521	broad.mit.edu	36	17	76410670	76410670	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020761	exon8	c.C965T	p.T322I	.	.	.
KRBA2	124751	broad.mit.edu	36	17	8215425	8215425	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213597	exon1	c.T153G	p.N51K	.	.	.
NDEL1	81565	broad.mit.edu	36	17	8304107	8304107	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025579	exon8	c.G848A	p.R283Q	.	.	.
NDEL1	81565	broad.mit.edu	36	17	8307370	8307370	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025579	exon9	c.A952C	p.K318Q	.	.	.
STX8	9482	broad.mit.edu	36	17	9412499	9412499	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004853	exon2	c.G31A	p.D11N	.	.	.
POTED	317754	broad.mit.edu	36	21	13904894	13904894	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174981	exon1	c.C474T	p.I158I	.	.	.
LIPI	149998	broad.mit.edu	36	21	14480187	14480187	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198996	exon3	c.A570C	p.G190G	.	.	.
SAMSN1	64092	broad.mit.edu	36	21	14804605	14804605	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022136	exon5	c.G458A	p.R153Q	.	.	.
CXADR	1525	broad.mit.edu	36	21	17846051	17846051	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001338	exon3	c.G324A	p.T108T	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18588466	18588466	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002772	exon21	c.C2478T	p.C826C	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21629723	21629723	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004540	exon7	c.G765T	p.E255D	.	.	.
ADAMTS5	11096	broad.mit.edu	36	21	27228871	27228871	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007038	exon4	c.G1474A	p.D492N	.	.	.
RWDD2B	10069	broad.mit.edu	36	21	29300808	29300808	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016940	exon5	c.G761A	p.R254H	.	.	.
RWDD2B	10069	broad.mit.edu	36	21	29302662	29302662	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016940	exon2	c.G219T	p.K73N	.	.	.
CLDN8	9073	broad.mit.edu	36	21	30509829	30509829	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199328	exon1	c.A286G	p.M96V	.	.	.
CLDN8	9073	broad.mit.edu	36	21	30510096	30510096	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199328	exon1	c.G19T	p.E7X	.	.	.
KRTAP24-1	643803	broad.mit.edu	36	21	30577060	30577060	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085455	exon1	c.G62T	p.R21I	.	.	.
KRTAP13-3	337960	broad.mit.edu	36	21	30719979	30719979	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181622	exon1	c.C123A	p.C41X	.	.	.
SFRS15	57466	broad.mit.edu	36	21	31987603	31987603	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145444	exon11	c.G1343A	p.R448Q	.	.	.
SYNJ1	8867	broad.mit.edu	36	21	32950892	32950892	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003895	exon21	c.G2888T	p.S963I	.	.	.
GCFC1	94104	broad.mit.edu	36	21	33029226	33029226	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016631	exon18	c.A2660C	p.K887T	.	.	.
DNAJC28	54943	broad.mit.edu	36	21	33782943	33782943	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040192	exon2	c.G628T	p.E210X	.	.	.
TTC3	7267	broad.mit.edu	36	21	37382018	37382018	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001894	exon3	c.G160T	p.D54Y	.	.	.
TTC3	7267	broad.mit.edu	36	21	37445011	37445011	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001894	exon25	c.G2233T	p.E745X	.	.	.
TTC3	7267	broad.mit.edu	36	21	37486303	37486303	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001894	exon41	c.T5136G	p.I1712M	.	.	.
BRWD1	54014	broad.mit.edu	36	21	39500069	39500069	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033656	exon37	c.T4199G	p.I1400S	.	.	.
TMPRSS2	7113	broad.mit.edu	36	21	41791922	41791922	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135099	exon2	c.G120T	p.L40F	.	.	.
UMODL1	89766	broad.mit.edu	36	21	42409117	42409117	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199527	exon13	c.G2596A	p.A866T	.	.	.
UBASH3A	53347	broad.mit.edu	36	21	42711675	42711675	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001895	exon6	c.G820A	p.E274K	.	.	.
CLEC16A	23274	broad.mit.edu	36	16	10978593	10978593	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015226	exon7	c.C739T	p.R247W	.	.	.
PRM1	5619	broad.mit.edu	36	16	11282511	11282511	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002761	exon1	c.G86A	p.S29N	.	.	.
RSL1D1	26156	broad.mit.edu	36	16	11849071	11849071	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015659	exon3	c.T339G	p.F113L	.	.	.
MYH11	4629	broad.mit.edu	36	16	15759232	15759232	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040114	exon14	c.G1549A	p.D517N	.	.	.
TMC5	79838	broad.mit.edu	36	16	19359419	19359419	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105248	exon3	c.G558T	p.K186N	.	.	.
GDE1	51573	broad.mit.edu	36	16	19429674	19429674	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016641	exon3	c.C531T	p.G177G	.	.	.
PDILT	204474	broad.mit.edu	36	16	20281257	20281257	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174924	exon10	c.C1386A	p.F462L	.	.	.
ERN2	10595	broad.mit.edu	36	16	23629820	23629820	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033266	exon2	c.G258T	p.E86D	.	.	.
CACNG3	10368	broad.mit.edu	36	16	24280305	24280305	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006539	exon4	c.G568T	p.E190X	.	.	.
RBBP6	5930	broad.mit.edu	36	16	24489123	24489123	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018703	exon16	c.C3509T	p.A1170V	.	.	.
ZKSCAN2	342357	broad.mit.edu	36	16	25165838	25165838	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012981	exon5	c.C1180T	p.R394X	.	.	.
HS3ST4	9951	broad.mit.edu	36	16	26054562	26054562	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006040	exon2	c.G863T	p.R288I	.	.	.
SEZ6L2	26470	broad.mit.edu	36	16	29814659	29814659	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201575	exon4	c.G535A	p.E179K	.	.	.
ZNF200	7752	broad.mit.edu	36	16	3214571	3214571	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003454	exon5	c.A510T	p.E170D	.	.	.
ABCC11	85320	broad.mit.edu	36	16	46802413	46802413	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145186	exon11	c.G1555T	p.E519X	.	.	.
LONP2	83752	broad.mit.edu	36	16	46943097	46943097	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031490	exon15	c.C2442T	p.N814N	.	.	.
N4BP1	9683	broad.mit.edu	36	16	47152730	47152730	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153029	exon2	c.T1325G	p.F442C	.	.	.
N4BP1	9683	broad.mit.edu	36	16	47153473	47153473	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153029	exon2	c.G582A	p.E194E	.	.	.
UBN1	29855	broad.mit.edu	36	16	4850872	4850872	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016936	exon6	c.T878G	p.F293C	.	.	.
NOD2	64127	broad.mit.edu	36	16	49302299	49302299	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022162	exon4	c.C976A	p.L326I	.	.	.
CHD9	80205	broad.mit.edu	36	16	51884348	51884348	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025134	exon29	c.A5393G	p.N1798S	.	.	.
NLRC5	84166	broad.mit.edu	36	16	55673020	55673020	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032206	exon48	c.T5486C	p.I1829T	.	.	.
RSPRY1	89970	broad.mit.edu	36	16	55804418	55804418	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133368	exon5	c.T550G	p.L184V	.	.	.
TSNAXIP1	55815	broad.mit.edu	36	16	66415997	66415997	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018430	exon6	c.G330T	p.R110S	.	.	.
CDH1	999	broad.mit.edu	36	16	67414808	67414808	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004360	exon13	c.G1942T	p.E648X	.	.	.
COG4	25839	broad.mit.edu	36	16	69109050	69109050	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015386	exon3	c.C349T	p.R117C	.	.	.
SF3B3	23450	broad.mit.edu	36	16	69139831	69139831	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012426	exon11	c.C1387T	p.R463C	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69776304	69776304	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032821	exon3	c.G226A	p.E76K	.	.	.
ZNF23	7571	broad.mit.edu	36	16	70040194	70040194	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145911	exon6	c.G1235T	p.R412I	.	.	.
ADAMTS18	170692	broad.mit.edu	36	16	75911336	75911336	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199355	exon16	c.G2443A	p.A815T	.	.	.
ADAMTS18	170692	broad.mit.edu	36	16	75945222	75945222	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199355	exon10	c.A1523C	p.D508A	.	.	.
CDH13	1012	broad.mit.edu	36	16	82077746	82077746	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001257	exon7	c.G945A	p.A315A	.	.	.
ATP2C2	9914	broad.mit.edu	36	16	83013775	83013775	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014861	exon9	c.G814T	p.E272X	.	.	.
FAM92B	339145	broad.mit.edu	36	16	83693426	83693426	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198491	exon6	c.T546G	p.F182L	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87876530	87876530	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013275	exon9	c.C3921T	p.S1307S	.	.	.
PRDM7	11105	broad.mit.edu	36	16	88654344	88654344	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098173	exon9	c.C1139T	p.A380V	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9765158	9765158	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134408	exon13	c.C3744T	p.I1248I	.	.	.
SEH1L	81929	broad.mit.edu	36	18	12974076	12974076	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013437	exon8	c.G957T	p.L319F	.	.	.
RNMT	8731	broad.mit.edu	36	18	13721605	13721605	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003799	exon3	c.T89G	p.F30C	.	.	.
MC5R	4161	broad.mit.edu	36	18	13815953	13815953	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005913	exon1	c.G189T	p.K63N	.	.	.
ROCK1	6093	broad.mit.edu	36	18	16944793	16944793	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005406	exon1	c.A77C	p.N26T	.	.	.
ESCO1	114799	broad.mit.edu	36	18	17407780	17407780	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052911	exon4	c.G1023T	p.L341F	.	.	.
ZNF521	25925	broad.mit.edu	36	18	21058541	21058541	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015461	exon4	c.G3339T	p.T1113T	.	.	.
CHST9	83539	broad.mit.edu	36	18	22751264	22751264	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031422	exon6	c.C289A	p.L97I	.	.	.
DSC1	1823	broad.mit.edu	36	18	26968671	26968671	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004948	exon12	c.G1738T	p.E580X	.	.	.
DSG4	147409	broad.mit.edu	36	18	27226224	27226224	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134453	exon8	c.C928A	p.L310I	.	.	.
FAM59A	64762	broad.mit.edu	36	18	28121436	28121436	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022751	exon4	c.C1122T	p.Y374Y	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29578229	29578229	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030632	exon12	c.C4419A	p.V1473V	.	.	.
ZSCAN30	100101467	broad.mit.edu	36	18	31087935	31087935	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001112734	exon4	c.G962T	p.R321I	.	.	.
MOCOS	55034	broad.mit.edu	36	18	32047364	32047364	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017947	exon7	c.G1256A	p.R419Q	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40785725	40785725	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015559	exon4	c.C2422A	p.L808I	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41713163	41713163	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020964	exon33	c.A5682G	p.I1894M	.	.	.
TCEB3B	51224	broad.mit.edu	36	18	42814388	42814388	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016427	exon1	c.G1246A	p.E416K	.	.	.
KATNAL2	83473	broad.mit.edu	36	18	42838716	42838716	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031303	exon4	c.A229C	p.N77H	.	.	.
MBD2	8932	broad.mit.edu	36	18	49985391	49985391	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015832	exon2	c.G677A	p.R226Q	.	.	.
C18orf54	162681	broad.mit.edu	36	18	50154599	50154599	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173529	exon7	c.C993A	p.F331L	.	.	.
CCDC68	80323	broad.mit.edu	36	18	50726085	50726085	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143829	exon11	c.G880T	p.E294X	.	.	.
TCF4	6925	broad.mit.edu	36	18	51088152	51088152	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083962	exon11	c.T830G	p.L277R	.	.	.
NARS	4677	broad.mit.edu	36	18	53424957	53424957	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004539	exon10	c.T1026C	p.C342C	.	.	.
ATP8B1	5205	broad.mit.edu	36	18	53470291	53470291	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005603	exon26	c.C3373A	p.L1125I	.	.	.
MC4R	4160	broad.mit.edu	36	18	56190201	56190201	+	Missense_Mutation	SNP	A	C	C	rs13447330	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005912	exon1	c.T362G	p.I121S	.	.	.
CDH20	28316	broad.mit.edu	36	18	57354807	57354807	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031891	exon7	c.C1373A	p.S458Y	.	.	.
TNFRSF11A	8792	broad.mit.edu	36	18	58166437	58166437	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003839	exon2	c.A132G	p.G44G	.	.	.
SERPINB12	89777	broad.mit.edu	36	18	59383704	59383704	+	Missense_Mutation	SNP	G	T	T	rs34833530	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080474	exon6	c.G692T	p.R231I	.	.	.
SERPINB13	5275	broad.mit.edu	36	18	59412676	59412676	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012397	exon6	c.G580T	p.E194X	.	.	.
RTTN	25914	broad.mit.edu	36	18	65968832	65968832	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173630	exon15	c.G2047A	p.E683K	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6949369	6949369	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005559	exon54	c.G7749A	p.A2583A	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70472686	70472686	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146190	exon1	c.G723T	p.Q241H	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70473377	70473377	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146190	exon1	c.G1414A	p.D472N	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70473904	70473904	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146190	exon1	c.G1941T	p.K647N	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70904629	70904629	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017757	exon8	c.C5964T	p.A1988A	.	.	.
LRRC30	339291	broad.mit.edu	36	18	7221358	7221358	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105581	exon1	c.G222T	p.Q74H	.	.	.
ADNP2	22850	broad.mit.edu	36	18	75995040	75995040	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014913	exon4	c.T753G	p.I251M	.	.	.
PTPRM	5797	broad.mit.edu	36	18	7878350	7878350	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002845	exon3	c.G443T	p.S148I	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9245359	9245359	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015208	exon9	c.G2094T	p.E698D	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9265530	9265530	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015208	exon11	c.C5772A	p.L1924L	.	.	.
FANCD2	2177	broad.mit.edu	36	3	10051388	10051388	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033084	exon5	c.G283T	p.E95X	.	.	.
C3orf26	84319	broad.mit.edu	36	3	101377888	101377888	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167924	exon9	c.T641G	p.F214C	.	.	.
NIT2	56954	broad.mit.edu	36	3	101547164	101547164	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020202	exon5	c.G382A	p.E128K	.	.	.
IMPG2	50939	broad.mit.edu	36	3	102446272	102446272	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016247	exon13	c.G1593A	p.L531L	.	.	.
SENP7	57337	broad.mit.edu	36	3	102529275	102529275	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020654	exon23	c.C2940T	p.C980C	.	.	.
RG9MTD1	54931	broad.mit.edu	36	3	102766404	102766404	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017819	exon2	c.G89T	p.R30I	.	.	.
ATP2B2	491	broad.mit.edu	36	3	10417759	10417759	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001683	exon5	c.A659G	p.D220G	.	.	.
MORC1	27136	broad.mit.edu	36	3	110300981	110300981	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014429	exon6	c.G337T	p.D113Y	.	.	.
DPPA2	151871	broad.mit.edu	36	3	110506057	110506057	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138815	exon7	c.C809T	p.S270F	.	.	.
PLCXD2	257068	broad.mit.edu	36	3	112909898	112909898	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153268	exon2	c.G599A	p.R200Q	.	.	.
TMPRSS7	344805	broad.mit.edu	36	3	113275871	113275871	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042575	exon12	c.G1327T	p.D443Y	.	.	.
CD200R1	131450	broad.mit.edu	36	3	114149406	114149406	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138939	exon2	c.G123A	p.E41E	.	.	.
GTPBP8	29083	broad.mit.edu	36	3	114198508	114198508	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014170	exon4	c.G646T	p.E216X	.	.	.
ZBTB20	26137	broad.mit.edu	36	3	115553341	115553341	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164343	exon11	c.G55A	p.E19K	.	.	.
ARHGAP31	57514	broad.mit.edu	36	3	120603386	120603386	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020754	exon10	c.G1097A	p.R366Q	.	.	.
ARHGAP31	57514	broad.mit.edu	36	3	120615714	120615714	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020754	exon12	c.G2248A	p.A750T	.	.	.
GPR156	165829	broad.mit.edu	36	3	121368752	121368752	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168271	exon9	c.C2250A	p.F750L	.	.	.
RABL3	285282	broad.mit.edu	36	3	121907598	121907598	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173825	exon4	c.C322T	p.R108C	.	.	.
POLQ	10721	broad.mit.edu	36	3	122713437	122713437	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199420	exon10	c.G1598A	p.R533Q	.	.	.
POLQ	10721	broad.mit.edu	36	3	122734530	122734530	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199420	exon6	c.G957T	p.V319V	.	.	.
FBXO40	51725	broad.mit.edu	36	3	122823339	122823339	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016298	exon3	c.T373C	p.L125L	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122899117	122899117	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004487	exon13	c.A2928G	p.E976E	.	.	.
CSTA	1475	broad.mit.edu	36	3	123539095	123539095	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005213	exon2	c.G78A	p.Q26Q	.	.	.
PARP9	83666	broad.mit.edu	36	3	123754001	123754001	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146103	exon5	c.A1061C	p.K354T	.	.	.
SEMA5B	54437	broad.mit.edu	36	3	124117138	124117138	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031702	exon14	c.T1827G	p.D609E	.	.	.
ADCY5	111	broad.mit.edu	36	3	124519564	124519564	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183357	exon11	c.G2347A	p.V783M	.	.	.
MYLK	4638	broad.mit.edu	36	3	124858704	124858704	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053025	exon24	c.G4247A	p.S1416N	.	.	.
TSEN2	80746	broad.mit.edu	36	3	12549176	12549176	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025265	exon12	c.C1354T	p.R452X	.	.	.
KALRN	8997	broad.mit.edu	36	3	125676251	125676251	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003947	exon26	c.A4077G	p.G1359G	.	.	.
UMPS	7372	broad.mit.edu	36	3	125939735	125939735	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000373	exon3	c.A941C	p.K314T	.	.	.
HEG1	57493	broad.mit.edu	36	3	126172304	126172304	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020733	exon17	c.G4028A	p.R1343Q	.	.	.
CHST13	166012	broad.mit.edu	36	3	127737865	127737865	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152889	exon2	c.G159T	p.Q53H	.	.	.
C3orf25	90288	broad.mit.edu	36	3	130605919	130605919	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207307	exon7	c.G1267T	p.D423Y	.	.	.
TRH	7200	broad.mit.edu	36	3	131178381	131178381	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007117	exon3	c.G361T	p.D121Y	.	.	.
ASTE1	28990	broad.mit.edu	36	3	132217810	132217810	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014065	exon5	c.C1577T	p.A526V	.	.	.
DNAJC13	23317	broad.mit.edu	36	3	133692443	133692443	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015268	exon32	c.G3481T	p.D1161Y	.	.	.
TF	7018	broad.mit.edu	36	3	134959330	134959330	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001063	exon8	c.G898T	p.E300X	.	.	.
EPHB1	2047	broad.mit.edu	36	3	136381479	136381479	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004441	exon10	c.T1847C	p.V616A	.	.	.
MSL2	55167	broad.mit.edu	36	3	137353388	137353388	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018133	exon2	c.G1025A	p.R342Q	.	.	.
STAG1	10274	broad.mit.edu	36	3	137704243	137704243	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005862	exon8	c.A745C	p.R249R	.	.	.
A4GNT	51146	broad.mit.edu	36	3	139326010	139326010	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016161	exon3	c.G809A	p.R270H	.	.	.
PIK3CB	5291	broad.mit.edu	36	3	139916063	139916063	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006219	exon7	c.G1239A	p.T413T	.	.	.
GK5	256356	broad.mit.edu	36	3	143417219	143417219	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039547	exon2	c.A153C	p.E51D	.	.	.
XRN1	54464	broad.mit.edu	36	3	143513170	143513170	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019001	exon42	c.C4994A	p.S1665Y	.	.	.
ATR	545	broad.mit.edu	36	3	143751675	143751675	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184	exon14	c.C2965T	p.R989C	.	.	.
SR140	23350	broad.mit.edu	36	3	144215901	144215901	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080415	exon4	c.G281A	p.R94Q	.	.	.
PLSCR4	57088	broad.mit.edu	36	3	147400484	147400484	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020353	exon6	c.G430T	p.D144Y	.	.	.
PLSCR4	57088	broad.mit.edu	36	3	147401536	147401536	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020353	exon5	c.C373A	p.L125I	.	.	.
HPS3	84343	broad.mit.edu	36	3	150372615	150372615	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032383	exon17	c.C2931A	p.F977L	.	.	.
CP	1356	broad.mit.edu	36	3	150409847	150409847	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000096	exon4	c.G622T	p.E208X	.	.	.
GPR87	53836	broad.mit.edu	36	3	152495435	152495435	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023915	exon3	c.C289T	p.R97X	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152638755	152638755	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178145	exon2	c.G365T	p.R122I	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152639017	152639017	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178145	exon2	c.G103T	p.E35X	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152646560	152646560	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178822	exon4	c.G3899T	p.S1300I	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152649308	152649308	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178822	exon4	c.C1151T	p.S384F	.	.	.
SUCNR1	56670	broad.mit.edu	36	3	153081666	153081666	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033050	exon3	c.G645T	p.K215N	.	.	.
METTL6	131965	broad.mit.edu	36	3	15430643	15430643	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152396	exon5	c.C562T	p.R188C	.	.	.
MME	4311	broad.mit.edu	36	3	156342591	156342591	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000902	exon11	c.C1075A	p.L359I	.	.	.
LEKR1	389170	broad.mit.edu	36	3	158228703	158228703	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004316	exon12	c.G1486T	p.E496X	.	.	.
CCNL1	57018	broad.mit.edu	36	3	158350011	158350011	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020307	exon9	c.G1090T	p.E364X	.	.	.
MFSD1	64747	broad.mit.edu	36	3	160009726	160009726	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022736	exon6	c.G652T	p.E218X	.	.	.
SCHIP1	29970	broad.mit.edu	36	3	160453275	160453275	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001197113	exon3	c.A140G	p.E47G	.	.	.
IFT80	57560	broad.mit.edu	36	3	161556525	161556525	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190242	exon7	c.T336G	p.F112L	.	.	.
ZBBX	79740	broad.mit.edu	36	3	168498879	168498879	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024687	exon18	c.G1787T	p.R596I	.	.	.
SERPINI1	5274	broad.mit.edu	36	3	169025737	169025737	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122752	exon9	c.C1165A	p.L389I	.	.	.
SLC2A2	6514	broad.mit.edu	36	3	172198502	172198502	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000340	exon11	c.A1459G	p.T487A	.	.	.
SLC2A2	6514	broad.mit.edu	36	3	172205849	172205849	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000340	exon7	c.C882A	p.L294L	.	.	.
SLC2A2	6514	broad.mit.edu	36	3	172206567	172206567	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000340	exon6	c.T634G	p.L212V	.	.	.
TNIK	23043	broad.mit.edu	36	3	172395087	172395087	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161565	exon5	c.T338C	p.V113A	.	.	.
TBC1D5	9779	broad.mit.edu	36	3	17390987	17390987	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134380	exon12	c.T802G	p.F268V	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180430594	180430594	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006218	exon19	c.C2775T	p.D925D	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184430161	184430161	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015078	exon17	c.G2032A	p.E678K	.	.	.
ECE2	9718	broad.mit.edu	36	3	185490742	185490742	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014693	exon14	c.A1911C	p.E637D	.	.	.
TBCCD1	55171	broad.mit.edu	36	3	187758950	187758950	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134415	exon3	c.A442C	p.N148H	.	.	.
ATP13A5	344905	broad.mit.edu	36	3	194563070	194563070	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198505	exon4	c.G435T	p.E145D	.	.	.
ATP13A4	84239	broad.mit.edu	36	3	194642061	194642061	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032279	exon20	c.T2327C	p.I776T	.	.	.
OPA1	4976	broad.mit.edu	36	3	194857592	194857592	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130832	exon21	c.T1989G	p.F663L	.	.	.
GP5	2814	broad.mit.edu	36	3	195599791	195599791	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004488	exon2	c.G510A	p.E170E	.	.	.
TFRC	7037	broad.mit.edu	36	3	197283335	197283335	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003234	exon5	c.C520T	p.R174C	.	.	.
EFHB	151651	broad.mit.edu	36	3	19899155	19899155	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144715	exon12	c.G2219T	p.R740I	.	.	.
ZNF385D	79750	broad.mit.edu	36	3	21440513	21440513	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024697	exon7	c.G900A	p.P300P	.	.	.
ZNF385D	79750	broad.mit.edu	36	3	21581083	21581083	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024697	exon3	c.G263T	p.R88I	.	.	.
NR1D2	9975	broad.mit.edu	36	3	23984439	23984439	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005126	exon7	c.A1464C	p.E488D	.	.	.
RARB	5915	broad.mit.edu	36	3	25477696	25477696	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000965	exon2	c.A166G	p.T56A	.	.	.
RARB	5915	broad.mit.edu	36	3	25586292	25586292	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000965	exon4	c.C488T	p.S163L	.	.	.
OXSM	54995	broad.mit.edu	36	3	25807708	25807708	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017897	exon2	c.C193T	p.R65C	.	.	.
SLC4A7	9497	broad.mit.edu	36	3	27473150	27473150	+	Nonsense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003615	exon1	c.T29G	p.L10X	.	.	.
IL5RA	3568	broad.mit.edu	36	3	3093234	3093234	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000564	exon11	c.C1072A	p.L358I	.	.	.
STT3B	201595	broad.mit.edu	36	3	31596353	31596353	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178862	exon3	c.A472C	p.N158H	.	.	.
CCR4	1233	broad.mit.edu	36	3	32970918	32970918	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005508	exon2	c.C1000A	p.L334I	.	.	.
ARPP21	10777	broad.mit.edu	36	3	35705870	35705870	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016300	exon7	c.G474T	p.K158N	.	.	.
ARPP21	10777	broad.mit.edu	36	3	35755950	35755950	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016300	exon17	c.C1782T	p.I594I	.	.	.
LRRFIP2	9209	broad.mit.edu	36	3	37107970	37107970	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134369	exon7	c.G403T	p.E135X	.	.	.
EXOG	9941	broad.mit.edu	36	3	38540474	38540474	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145464	exon5	c.G574A	p.E192K	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38620274	38620274	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099405	exon12	c.A1823G	p.D608G	.	.	.
LRRN1	57633	broad.mit.edu	36	3	3862326	3862326	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020873	exon2	c.G1001A	p.R334Q	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38863880	38863880	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014139	exon26	c.G4685A	p.R1562Q	.	.	.
GORASP1	64689	broad.mit.edu	36	3	39114731	39114731	+	Read-through	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031899	exon9	c.A1323C	p.X441Y	.	.	.
CSRNP1	64651	broad.mit.edu	36	3	39160751	39160751	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033027	exon4	c.C661T	p.R221W	.	.	.
MYRIP	25924	broad.mit.edu	36	3	40206686	40206686	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015460	exon10	c.G1393A	p.E465K	.	.	.
ZNF620	253639	broad.mit.edu	36	3	40532904	40532904	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175888	exon5	c.G815T	p.R272I	.	.	.
CHL1	10752	broad.mit.edu	36	3	406154	406154	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006614	exon20	c.G2467T	p.D823Y	.	.	.
CTNNB1	1499	broad.mit.edu	36	3	41250653	41250653	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098210	exon10	c.G1544A	p.R515Q	.	.	.
ULK4	54986	broad.mit.edu	36	3	41952377	41952377	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017886	exon4	c.G298T	p.E100X	.	.	.
CCDC13	152206	broad.mit.edu	36	3	42762439	42762439	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144719	exon7	c.A805C	p.I269L	.	.	.
CCBP2	1238	broad.mit.edu	36	3	42881748	42881748	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001296	exon3	c.A750C	p.K250N	.	.	.
C3orf23	285343	broad.mit.edu	36	3	44409427	44409427	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173826	exon6	c.C649T	p.R217C	.	.	.
TGM4	7047	broad.mit.edu	36	3	44918324	44918324	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003241	exon8	c.A868G	p.T290A	.	.	.
CDCP1	64866	broad.mit.edu	36	3	45128829	45128829	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022842	exon3	c.C405T	p.I135I	.	.	.
CCR9	10803	broad.mit.edu	36	3	45917322	45917322	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006641	exon2	c.T2C	p.M1T	.	.	.
PRSS42	339906	broad.mit.edu	36	3	46849630	46849630	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182702	exon3	c.G442T	p.V148F	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4697294	4697294	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099952	exon25	c.C2998T	p.R1000X	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4707962	4707962	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099952	exon32	c.C3936A	p.F1312L	.	.	.
SETD2	29072	broad.mit.edu	36	3	47137853	47137853	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014159	exon3	c.A3277C	p.S1093R	.	.	.
IMPDH2	3615	broad.mit.edu	36	3	49037381	49037381	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000884	exon11	c.C1247A	p.S416Y	.	.	.
LAMB2	3913	broad.mit.edu	36	3	49141486	49141486	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002292	exon13	c.A1702C	p.I568L	.	.	.
RHOA	387	broad.mit.edu	36	3	49372767	49372767	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001664	exon5	c.T461G	p.F154C	.	.	.
RBM5	10181	broad.mit.edu	36	3	50126435	50126435	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005778	exon19	c.G1666T	p.E556X	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51102817	51102817	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004947	exon9	c.C667A	p.L223I	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51226594	51226594	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004947	exon14	c.T1087C	p.S363P	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51290196	51290196	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004947	exon26	c.C2753T	p.A918V	.	.	.
ITIH3	3699	broad.mit.edu	36	3	52816021	52816021	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002217	exon19	c.G2121T	p.K707N	.	.	.
LRTM1	57408	broad.mit.edu	36	3	54933697	54933697	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020678	exon2	c.T593G	p.F198C	.	.	.
CCDC66	285331	broad.mit.edu	36	3	56576053	56576053	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001141947	exon6	c.C746A	p.T249N	.	.	.
C3orf14	57415	broad.mit.edu	36	3	62294100	62294100	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020685	exon5	c.G383A	p.R128Q	.	.	.
TMF1	7110	broad.mit.edu	36	3	69161775	69161775	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007114	exon11	c.A2475C	p.K825N	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78771590	78771590	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002941	exon22	c.C3031T	p.R1011C	.	.	.
EPHA3	2042	broad.mit.edu	36	3	89531258	89531258	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005233	exon7	c.C1532T	p.A511V	.	.	.
STX19	415117	broad.mit.edu	36	3	95216119	95216119	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001850	exon2	c.T685G	p.L229V	.	.	.
OR5K3	403277	broad.mit.edu	36	3	99592823	99592823	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005516	exon1	c.C624A	p.I208I	.	.	.
MYBPC1	4604	broad.mit.edu	36	12	100584664	100584664	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206820	exon21	c.A2293C	p.K765Q	.	.	.
OLR1	4973	broad.mit.edu	36	12	10215880	10215880	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002543	exon1	c.A64T	p.K22X	.	.	.
STAB2	55576	broad.mit.edu	36	12	102573205	102573205	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017564	exon14	c.C1598A	p.S533Y	.	.	.
STAB2	55576	broad.mit.edu	36	12	102578666	102578666	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017564	exon17	c.G1864A	p.D622N	.	.	.
POLR3B	55703	broad.mit.edu	36	12	105381402	105381402	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018082	exon23	c.G2587A	p.D863N	.	.	.
BTBD11	121551	broad.mit.edu	36	12	106438423	106438423	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018072	exon2	c.C1165A	p.L389I	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107128151	107128151	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014653	exon4	c.C621T	p.C207C	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107142676	107142676	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014653	exon5	c.G713A	p.R238H	.	.	.
FOXN4	121643	broad.mit.edu	36	12	108207567	108207567	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213596	exon8	c.G826A	p.D276N	.	.	.
TAS2R10	50839	broad.mit.edu	36	12	10869397	10869397	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023921	exon1	c.A739C	p.I247L	.	.	.
ATP2A2	488	broad.mit.edu	36	12	109263147	109263147	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170665	exon14	c.G2062T	p.E688X	.	.	.
MYL2	4633	broad.mit.edu	36	12	109837945	109837945	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000432	exon3	c.C126T	p.G42G	.	.	.
RPL6	6128	broad.mit.edu	36	12	111328176	111328176	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024662	exon6	c.T578G	p.F193C	.	.	.
PLBD2	196463	broad.mit.edu	36	12	112306322	112306322	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159727	exon7	c.G987T	p.K329N	.	.	.
RBM19	9904	broad.mit.edu	36	12	112881494	112881494	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016196	exon5	c.G477A	p.S159S	.	.	.
MED13L	23389	broad.mit.edu	36	12	115159724	115159724	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015335	exon2	c.A242C	p.K81T	.	.	.
FBXO21	23014	broad.mit.edu	36	12	116094688	116094688	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015002	exon7	c.C984A	p.F328L	.	.	.
KSR2	283455	broad.mit.edu	36	12	116890281	116890281	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173598	exon1	c.G76T	p.E26X	.	.	.
VSIG10	54621	broad.mit.edu	36	12	116996113	116996113	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019086	exon5	c.C993T	p.C331C	.	.	.
CIT	11113	broad.mit.edu	36	12	118643556	118643556	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007174	exon28	c.C3547T	p.R1183W	.	.	.
CLIP1	6249	broad.mit.edu	36	12	121391687	121391687	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198240	exon9	c.G1879A	p.E627K	.	.	.
ZCCHC8	55596	broad.mit.edu	36	12	121532100	121532100	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017612	exon10	c.C940T	p.R314C	.	.	.
LRP6	4040	broad.mit.edu	36	12	12208502	12208502	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002336	exon9	c.G2024A	p.R675Q	.	.	.
SBNO1	55206	broad.mit.edu	36	12	122376816	122376816	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018183	exon13	c.C1708T	p.R570W	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122982189	122982189	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207437	exon74	c.G12616T	p.E4206X	.	.	.
BRI3BP	140707	broad.mit.edu	36	12	124075561	124075561	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080626	exon3	c.G388A	p.G130S	.	.	.
CDKN1B	1027	broad.mit.edu	36	12	12763064	12763064	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004064	exon2	c.G514T	p.E172X	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129456705	129456705	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015347	exon17	c.G2962T	p.V988F	.	.	.
POLE	5426	broad.mit.edu	36	12	131759920	131759920	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006231	exon14	c.C1376T	p.S459F	.	.	.
ZNF140	7699	broad.mit.edu	36	12	132193269	132193269	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003440	exon5	c.A1333C	p.N445H	.	.	.
GUCY2C	2984	broad.mit.edu	36	12	14670073	14670073	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004963	exon21	c.A2293C	p.I765L	.	.	.
ART4	420	broad.mit.edu	36	12	14885226	14885226	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021071	exon2	c.G273T	p.K91N	.	.	.
GYS2	2998	broad.mit.edu	36	12	21624559	21624559	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021957	exon2	c.A287T	p.N96I	.	.	.
CASC1	55259	broad.mit.edu	36	12	25167456	25167456	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001082972	exon10	c.A1208C	p.K403T	.	.	.
KRAS	3845	broad.mit.edu	36	12	25269973	25269973	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon4	c.G292T	p.E98X	.	.	.
RASSF8	11228	broad.mit.edu	36	12	26099552	26099552	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007211	exon3	c.T9C	p.L3L	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26702269	26702269	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002223	exon17	c.G1948T	p.E650X	.	.	.
TMTC1	83857	broad.mit.edu	36	12	29799909	29799909	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193451	exon4	c.C731T	p.S244L	.	.	.
CAPRIN2	65981	broad.mit.edu	36	12	30758001	30758001	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002259	exon16	c.A2736C	p.A912A	.	.	.
DDX11	1663	broad.mit.edu	36	12	31135932	31135932	+	Missense_Mutation	SNP	C	T	T	rs71447578	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004399	exon10	c.C1102T	p.P368S	.	.	.
DENND5B	160518	broad.mit.edu	36	12	31431983	31431983	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144973	exon21	c.C3646T	p.R1216C	.	.	.
DNM1L	10059	broad.mit.edu	36	12	32757500	32757500	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012062	exon6	c.G547A	p.A183T	.	.	.
SYT10	341359	broad.mit.edu	36	12	33424082	33424082	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198992	exon6	c.G1452A	p.M484I	.	.	.
KIF21A	55605	broad.mit.edu	36	12	38012402	38012402	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001173465	exon19	c.G2824A	p.G942R	.	.	.
ABCD2	225	broad.mit.edu	36	12	38284064	38284064	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005164	exon5	c.G1417T	p.D473Y	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39613933	39613933	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175038	exon8	c.G938T	p.R313I	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39624234	39624234	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175038	exon13	c.T1645G	p.F549V	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42111453	42111453	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025003	exon22	c.T3210C	p.S1070S	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42119992	42119992	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025003	exon17	c.G2438A	p.R813Q	.	.	.
PUS7L	83448	broad.mit.edu	36	12	42434820	42434820	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098615	exon2	c.A496C	p.I166L	.	.	.
SLC38A4	55089	broad.mit.edu	36	12	45448363	45448363	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018018	exon16	c.C1539T	p.V513V	.	.	.
AKAP3	10566	broad.mit.edu	36	12	4607524	4607524	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006422	exon4	c.C805T	p.R269X	.	.	.
C12orf54	121273	broad.mit.edu	36	12	47174885	47174885	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152319	exon8	c.T280G	p.L94V	.	.	.
C12orf41	54934	broad.mit.edu	36	12	47335020	47335020	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017822	exon9	c.G1318T	p.E440X	.	.	.
MLL2	8085	broad.mit.edu	36	12	47731517	47731517	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003482	exon10	c.A2216G	p.E739G	.	.	.
KRT83	3889	broad.mit.edu	36	12	50997048	50997048	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002282	exon5	c.C777T	p.I259I	.	.	.
KRT5	3852	broad.mit.edu	36	12	51195850	51195850	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000424	exon8	c.C1473A	p.I491I	.	.	.
TARBP2	6895	broad.mit.edu	36	12	52184835	52184835	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004178	exon6	c.G519T	p.M173I	.	.	.
ITGA7	3679	broad.mit.edu	36	12	54374508	54374508	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144997	exon17	c.G2064A	p.E688E	.	.	.
CNPY2	10330	broad.mit.edu	36	12	54991061	54991061	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014255	exon5	c.C453A	p.F151L	.	.	.
HSD17B6	8630	broad.mit.edu	36	12	55467272	55467272	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003725	exon5	c.G833A	p.R278Q	.	.	.
LRP1	4035	broad.mit.edu	36	12	55878688	55878688	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002332	exon60	c.T9644G	p.F3215C	.	.	.
MARS	4141	broad.mit.edu	36	12	56195093	56195093	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004990	exon17	c.G2189A	p.G730D	.	.	.
SLC16A7	9194	broad.mit.edu	36	12	58455047	58455047	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004731	exon4	c.A704C	p.K235T	.	.	.
SLC16A7	9194	broad.mit.edu	36	12	58455452	58455452	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004731	exon4	c.G1109T	p.R370I	.	.	.
VWF	7450	broad.mit.edu	36	12	5975600	5975600	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000552	exon35	c.G5892A	p.Q1964Q	.	.	.
VWF	7450	broad.mit.edu	36	12	5992937	5992937	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000552	exon32	c.G5591A	p.G1864D	.	.	.
LTBR	4055	broad.mit.edu	36	12	6369580	6369580	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002342	exon9	c.G843A	p.P281P	.	.	.
NCAPD2	9918	broad.mit.edu	36	12	6497069	6497069	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014865	exon12	c.A1367C	p.K456T	.	.	.
GRIP1	23426	broad.mit.edu	36	12	65072527	65072527	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178074	exon18	c.G2136T	p.K712N	.	.	.
CHD4	1108	broad.mit.edu	36	12	6577498	6577498	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001273	exon12	c.G1715A	p.R572Q	.	.	.
CHD4	1108	broad.mit.edu	36	12	6577706	6577706	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001273	exon11	c.C1629A	p.F543L	.	.	.
MDM1	56890	broad.mit.edu	36	12	67003214	67003214	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017440	exon5	c.G707T	p.R236I	.	.	.
NUP107	57122	broad.mit.edu	36	12	67411720	67411720	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020401	exon22	c.T1952G	p.F651C	.	.	.
NUP107	57122	broad.mit.edu	36	12	67412775	67412775	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020401	exon23	c.G2090A	p.R697K	.	.	.
BEST3	144453	broad.mit.edu	36	12	68335112	68335112	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152439	exon6	c.C1210A	p.L404I	.	.	.
BEST3	144453	broad.mit.edu	36	12	68377727	68377727	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032735	exon2	c.C119T	p.A40V	.	.	.
PTPRR	5801	broad.mit.edu	36	12	69434346	69434346	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002849	exon5	c.A630C	p.K210N	.	.	.
C1S	716	broad.mit.edu	36	12	7047717	7047717	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201442	exon12	c.G1568A	p.R523Q	.	.	.
TRHDE	29953	broad.mit.edu	36	12	71149845	71149845	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013381	exon4	c.G1221T	p.E407D	.	.	.
CD163	9332	broad.mit.edu	36	12	7529054	7529054	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203416	exon11	c.G2684T	p.C895F	.	.	.
NAV3	89795	broad.mit.edu	36	12	76924665	76924665	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014903	exon8	c.G1216T	p.G406X	.	.	.
NAV3	89795	broad.mit.edu	36	12	77106595	77106595	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014903	exon32	c.G5896A	p.D1966N	.	.	.
NAV3	89795	broad.mit.edu	36	12	77115201	77115201	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014903	exon34	c.C6269A	p.A2090D	.	.	.
PPFIA2	8499	broad.mit.edu	36	12	80363596	80363596	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003625	exon6	c.G440A	p.R147Q	.	.	.
WNK1	65125	broad.mit.edu	36	12	806558	806558	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184985	exon3	c.G1022A	p.R341Q	.	.	.
CLEC4A	50856	broad.mit.edu	36	12	8169513	8169513	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194450	exon2	c.G172A	p.A58T	.	.	.
FAM90A1	55138	broad.mit.edu	36	12	8265762	8265762	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018088	exon7	c.C1318T	p.R440C	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83809883	83809883	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018057	exon2	c.G148T	p.D50Y	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	84016809	84016809	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032165	exon13	c.G3115T	p.E1039X	.	.	.
MGAT4C	25834	broad.mit.edu	36	12	84901572	84901572	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013244	exon6	c.A155C	p.D52A	.	.	.
AICDA	57379	broad.mit.edu	36	12	8649173	8649173	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020661	exon3	c.C332T	p.A111V	.	.	.
C12orf50	160419	broad.mit.edu	36	12	86905818	86905818	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152589	exon9	c.A757G	p.T253A	.	.	.
DUSP6	1848	broad.mit.edu	36	12	88268504	88268504	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001946	exon2	c.C830A	p.S277Y	.	.	.
POC1B	282809	broad.mit.edu	36	12	88384727	88384727	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172240	exon9	c.T983C	p.I328T	.	.	.
RAD52	5893	broad.mit.edu	36	12	893507	893507	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_134424	exon11	c.G1009A	p.D337N	.	.	.
C12orf12	196477	broad.mit.edu	36	12	89871747	89871747	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152638	exon1	c.G904A	p.E302K	.	.	.
DCN	1634	broad.mit.edu	36	12	90063998	90063998	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001920	exon8	c.C1048T	p.R350C	.	.	.
FGD6	55785	broad.mit.edu	36	12	94012569	94012569	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018351	exon15	c.C3530T	p.A1177V	.	.	.
CD69	969	broad.mit.edu	36	12	9800250	9800250	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001781	exon2	c.C97A	p.H33N	.	.	.
OR4F15	390649	broad.mit.edu	36	15	100176328	100176328	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001674	exon1	c.G416T	p.R139I	.	.	.
OR4M2	390538	broad.mit.edu	36	15	19870217	19870217	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004719	exon1	c.C278A	p.S93Y	.	.	.
OR4N4	283694	broad.mit.edu	36	15	19883853	19883853	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005241	exon1	c.A17C	p.N6T	.	.	.
GABRB3	2562	broad.mit.edu	36	15	24344125	24344125	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021912	exon9	c.G1330A	p.D444N	.	.	.
HERC2	8924	broad.mit.edu	36	15	26188002	26188002	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004667	exon11	c.A1433C	p.N478T	.	.	.
TJP1	7082	broad.mit.edu	36	15	27798426	27798426	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175610	exon20	c.C2972T	p.S991F	.	.	.
MTMR10	54893	broad.mit.edu	36	15	29056415	29056415	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017762	exon3	c.A157C	p.K53Q	.	.	.
ARHGAP11A	9824	broad.mit.edu	36	15	30713496	30713496	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199357	exon10	c.C1306T	p.R436C	.	.	.
FMN1	342184	broad.mit.edu	36	15	30878306	30878306	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103184	exon15	c.C3452A	p.S1151Y	.	.	.
FMN1	342184	broad.mit.edu	36	15	31048577	31048577	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103184	exon4	c.G1948A	p.A650T	.	.	.
RYR3	6263	broad.mit.edu	36	15	31742403	31742403	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon35	c.T5380G	p.L1794V	.	.	.
RYR3	6263	broad.mit.edu	36	15	31834624	31834624	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon58	c.G8466A	p.K2822K	.	.	.
RYR3	6263	broad.mit.edu	36	15	31859770	31859770	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon65	c.G9204A	p.E3068E	.	.	.
CHRM5	1133	broad.mit.edu	36	15	32142594	32142594	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012125	exon3	c.T384C	p.R128R	.	.	.
SLC12A6	9990	broad.mit.edu	36	15	32334766	32334766	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042497	exon6	c.G820T	p.E274X	.	.	.
ZNF770	54989	broad.mit.edu	36	15	33062195	33062195	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014106	exon3	c.C733T	p.R245W	.	.	.
ZNF770	54989	broad.mit.edu	36	15	33062666	33062666	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014106	exon3	c.C262T	p.R88C	.	.	.
C15orf41	84529	broad.mit.edu	36	15	34737337	34737337	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130010	exon5	c.G285A	p.A95A	.	.	.
MEIS2	4212	broad.mit.edu	36	15	34976127	34976127	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170676	exon10	c.C1030T	p.R344X	.	.	.
FAM98B	283742	broad.mit.edu	36	15	36553072	36553072	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173611	exon5	c.A606G	p.E202E	.	.	.
FSIP1	161835	broad.mit.edu	36	15	37697303	37697303	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152597	exon11	c.C1624G	p.L542V	.	.	.
BUB1B	701	broad.mit.edu	36	15	38276166	38276166	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001211	exon9	c.T1187G	p.M396R	.	.	.
DISP2	85455	broad.mit.edu	36	15	38449594	38449594	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033510	exon8	c.G3989A	p.R1330Q	.	.	.
C15orf23	90417	broad.mit.edu	36	15	38473040	38473040	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033286	exon9	c.A901C	p.N301H	.	.	.
C15orf57	90416	broad.mit.edu	36	15	38636804	38636804	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080792	exon3	c.C304T	p.R102X	.	.	.
CASC5	57082	broad.mit.edu	36	15	38701297	38701297	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170589	exon11	c.G1621A	p.E541K	.	.	.
SPTBN5	51332	broad.mit.edu	36	15	39934416	39934416	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016642	exon56	c.C9369A	p.G3123G	.	.	.
VPS39	23339	broad.mit.edu	36	15	40266801	40266801	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015289	exon7	c.C494A	p.S165Y	.	.	.
HAUS2	55142	broad.mit.edu	36	15	40637719	40637719	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018097	exon2	c.C125A	p.S42Y	.	.	.
CDAN1	146059	broad.mit.edu	36	15	40808571	40808571	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138477	exon19	c.C2587T	p.R863C	.	.	.
TMEM62	80021	broad.mit.edu	36	15	41213829	41213829	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024956	exon2	c.T263A	p.I88N	.	.	.
TGM5	9333	broad.mit.edu	36	15	41332291	41332291	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004245	exon5	c.C574T	p.R192C	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41526946	41526946	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005657	exon13	c.G2731T	p.E911X	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41557176	41557176	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005657	exon8	c.G847T	p.E283X	.	.	.
PDIA3	2923	broad.mit.edu	36	15	41846398	41846398	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005313	exon8	c.C1026A	p.F342L	.	.	.
ELL3	80237	broad.mit.edu	36	15	41853695	41853695	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025165	exon9	c.C1015T	p.R339W	.	.	.
EIF3J	8669	broad.mit.edu	36	15	42630926	42630926	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003758	exon4	c.A208C	p.K70Q	.	.	.
SPG11	80208	broad.mit.edu	36	15	42677795	42677795	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025137	exon23	c.G3961T	p.E1321X	.	.	.
SPG11	80208	broad.mit.edu	36	15	42713089	42713089	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025137	exon8	c.C1641A	p.F547L	.	.	.
B2M	567	broad.mit.edu	36	15	42794933	42794933	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004048	exon2	c.T88C	p.Y30H	.	.	.
B2M	567	broad.mit.edu	36	15	42795073	42795073	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004048	exon2	c.C228A	p.F76L	.	.	.
TRIM69	140691	broad.mit.edu	36	15	42846948	42846948	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182985	exon7	c.G1189T	p.E397X	.	.	.
SORD	6652	broad.mit.edu	36	15	43152984	43152984	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003104	exon9	c.C1038A	p.I346I	.	.	.
DUOX2	50506	broad.mit.edu	36	15	43183464	43183464	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014080	exon20	c.C2640A	p.F880L	.	.	.
FBN1	2200	broad.mit.edu	36	15	46675816	46675816	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000138	exon6	c.G494A	p.R165Q	.	.	.
CEP152	22995	broad.mit.edu	36	15	46835850	46835850	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001194998	exon20	c.G2887T	p.E963X	.	.	.
CEP152	22995	broad.mit.edu	36	15	46875603	46875603	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001194998	exon6	c.A587C	p.K196T	.	.	.
CEP152	22995	broad.mit.edu	36	15	46885078	46885078	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001194998	exon2	c.G61A	p.E21K	.	.	.
C15orf33	196951	broad.mit.edu	36	15	47669364	47669364	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152647	exon4	c.G238A	p.A80T	.	.	.
C15orf33	196951	broad.mit.edu	36	15	47690738	47690738	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152647	exon3	c.A71C	p.K24T	.	.	.
SLC27A2	11001	broad.mit.edu	36	15	48306632	48306632	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159629	exon6	c.C1263A	p.F421L	.	.	.
HDC	3067	broad.mit.edu	36	15	48321869	48321869	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002112	exon12	c.G1869T	p.M623I	.	.	.
HDC	3067	broad.mit.edu	36	15	48322030	48322030	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002112	exon12	c.T1708C	p.F570L	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48678620	48678620	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017672	exon22	c.G3154T	p.E1052X	.	.	.
GLDN	342035	broad.mit.edu	36	15	49479701	49479701	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181789	exon7	c.A838C	p.N280H	.	.	.
LEO1	123169	broad.mit.edu	36	15	50026799	50026799	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138792	exon11	c.G1878T	p.K626N	.	.	.
MYO5C	55930	broad.mit.edu	36	15	50324936	50324936	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018728	exon18	c.C2085A	p.F695L	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52586677	52586677	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080534	exon21	c.A5372G	p.E1791G	.	.	.
PRTG	283659	broad.mit.edu	36	15	53763361	53763361	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173814	exon3	c.G458A	p.R153Q	.	.	.
RNF111	54778	broad.mit.edu	36	15	57135330	57135330	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017610	exon4	c.G1165T	p.E389X	.	.	.
RNF111	54778	broad.mit.edu	36	15	57146569	57146569	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017610	exon6	c.G1681T	p.E561X	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60043359	60043359	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017684	exon30	c.G3169A	p.E1057K	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60092603	60092603	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017684	exon9	c.G623A	p.R208Q	.	.	.
LACTB	114294	broad.mit.edu	36	15	61220917	61220917	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032857	exon6	c.G1504T	p.E502X	.	.	.
HERC1	8925	broad.mit.edu	36	15	61715243	61715243	+	Silent	SNP	G	A	A	rs2228509	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003922	exon65	c.C12384T	p.I4128I	.	.	.
ZNF609	23060	broad.mit.edu	36	15	62757412	62757412	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015042	exon5	c.C3447A	p.Y1149X	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63769940	63769940	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144823	exon23	c.C4043A	p.S1348X	.	.	.
TIPIN	54962	broad.mit.edu	36	15	64428502	64428502	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017858	exon6	c.G425A	p.R142Q	.	.	.
IQCH	64799	broad.mit.edu	36	15	65451750	65451750	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031715	exon9	c.C1001T	p.T334M	.	.	.
SKOR1	390598	broad.mit.edu	36	15	65911698	65911698	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031807	exon7	c.G2488A	p.E830K	.	.	.
PIAS1	8554	broad.mit.edu	36	15	66256036	66256036	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016166	exon11	c.A1471C	p.N491H	.	.	.
ITGA11	22801	broad.mit.edu	36	15	66441010	66441010	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004439	exon5	c.C444A	p.F148L	.	.	.
CORO2B	10391	broad.mit.edu	36	15	66798821	66798821	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006091	exon11	c.C1187A	p.S396Y	.	.	.
CLK3	1198	broad.mit.edu	36	15	72705344	72705344	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130028	exon7	c.C1243A	p.L415I	.	.	.
CYP1A2	1544	broad.mit.edu	36	15	72829480	72829480	+	Silent	SNP	C	T	T	rs71541923	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000761	exon2	c.C348T	p.L116L	.	.	.
C15orf27	123591	broad.mit.edu	36	15	74217124	74217124	+	De_novo_Start_OutOfFrame	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152335	exon3	c.T60G	p.I20M	.	.	.
SGK269	79834	broad.mit.edu	36	15	75194373	75194373	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024776	exon6	c.T4421G	p.F1474C	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77064413	77064413	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002891	exon24	c.C3453A	p.V1151V	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77126178	77126178	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002891	exon5	c.C843T	p.I281I	.	.	.
BCL2A1	597	broad.mit.edu	36	15	78050105	78050105	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004049	exon1	c.G412T	p.G138X	.	.	.
BCL2A1	597	broad.mit.edu	36	15	78050170	78050170	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004049	exon1	c.A347C	p.K116T	.	.	.
TMC3	342125	broad.mit.edu	36	15	79441684	79441684	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080532	exon4	c.T326G	p.F109C	.	.	.
FAM154B	283726	broad.mit.edu	36	15	80362123	80362123	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008226	exon3	c.G862T	p.D288Y	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82430309	82430309	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207517	exon20	c.C2560T	p.R854W	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82485135	82485135	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207517	exon27	c.T4599C	p.P1533P	.	.	.
ZSCAN2	54993	broad.mit.edu	36	15	82965945	82965945	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181877	exon3	c.C1515T	p.S505S	.	.	.
PLIN1	5346	broad.mit.edu	36	15	88021721	88021721	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002666	exon2	c.G4A	p.A2T	.	.	.
ANPEP	290	broad.mit.edu	36	15	88149349	88149349	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001150	exon4	c.C861T	p.F287F	.	.	.
TTLL13	440307	broad.mit.edu	36	15	88597561	88597561	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029964	exon4	c.C375T	p.C125C	.	.	.
BLM	641	broad.mit.edu	36	15	89142473	89142473	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000057	exon17	c.T3260G	p.F1087C	.	.	.
UNC45A	55898	broad.mit.edu	36	15	89283983	89283983	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039675	exon8	c.A400G	p.T134A	.	.	.
CHD2	1106	broad.mit.edu	36	15	91346502	91346502	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001271	exon33	c.A4229C	p.D1410A	.	.	.
LASS3	204219	broad.mit.edu	36	15	98833820	98833820	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178842	exon9	c.G603T	p.K201N	.	.	.
LASS3	204219	broad.mit.edu	36	15	98848581	98848581	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178842	exon5	c.G252T	p.E84D	.	.	.
ASB7	140460	broad.mit.edu	36	15	99006177	99006177	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198243	exon6	c.T944G	p.F315C	.	.	.
PCSK6	5046	broad.mit.edu	36	15	99789169	99789169	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138322	exon4	c.G534A	p.S178S	.	.	.
ADH6	130	broad.mit.edu	36	4	100345185	100345185	+	Read-through	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000672	exon8	c.G1023T	p.L341F	.	.	.
ADH1B	125	broad.mit.edu	36	4	100459028	100459028	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000668	exon2	c.G57T	p.K19N	.	.	.
BANK1	55024	broad.mit.edu	36	4	103165455	103165455	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017935	exon9	c.G1360T	p.E454X	.	.	.
NHEDC1	150159	broad.mit.edu	36	4	104130473	104130473	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139173	exon3	c.A144C	p.P48P	.	.	.
CENPE	1062	broad.mit.edu	36	4	104288060	104288060	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001813	exon29	c.T4036G	p.S1346A	.	.	.
TET2	54790	broad.mit.edu	36	4	106374974	106374974	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017628	exon3	c.C426T	p.S142S	.	.	.
PPA2	27068	broad.mit.edu	36	4	106564925	106564925	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006903	exon6	c.C445A	p.L149I	.	.	.
CFI	3426	broad.mit.edu	36	4	110902153	110902153	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000204	exon4	c.C627T	p.F209F	.	.	.
ALPK1	80216	broad.mit.edu	36	4	113571464	113571464	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025144	exon11	c.G1312A	p.E438K	.	.	.
LARP7	51574	broad.mit.edu	36	4	113787491	113787491	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016648	exon5	c.T483G	p.S161S	.	.	.
ANK2	287	broad.mit.edu	36	4	114451974	114451974	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020977	exon24	c.G2663A	p.R888Q	.	.	.
ANK2	287	broad.mit.edu	36	4	114458316	114458316	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020977	exon25	c.C2698T	p.R900X	.	.	.
ANK2	287	broad.mit.edu	36	4	114495305	114495305	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001148	exon38	c.C6082T	p.R2028W	.	.	.
NDST3	9348	broad.mit.edu	36	4	119195035	119195035	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004784	exon2	c.C522A	p.S174R	.	.	.
METTL14	57721	broad.mit.edu	36	4	119835054	119835054	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020961	exon6	c.T428G	p.F143C	.	.	.
C4orf31	79625	broad.mit.edu	36	4	122176872	122176872	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024574	exon4	c.T1704C	p.C568C	.	.	.
TNIP3	79931	broad.mit.edu	36	4	122287758	122287758	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128843	exon9	c.T631G	p.F211V	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123341639	123341639	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015312	exon13	c.G1406A	p.R469Q	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123502644	123502644	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015312	exon84	c.C14810A	p.S4937Y	.	.	.
ADAD1	132612	broad.mit.edu	36	4	123536901	123536901	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139243	exon7	c.G643T	p.E215X	.	.	.
ANKRD50	57182	broad.mit.edu	36	4	125812327	125812327	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167882	exon3	c.C1018T	p.R340X	.	.	.
FAT4	79633	broad.mit.edu	36	4	126609229	126609229	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024582	exon11	c.G12012A	p.T4004T	.	.	.
FAT4	79633	broad.mit.edu	36	4	126632273	126632273	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024582	exon17	c.A14846C	p.D4949A	.	.	.
HSPA4L	22824	broad.mit.edu	36	4	128939266	128939266	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014278	exon4	c.G381T	p.E127D	.	.	.
SCLT1	132320	broad.mit.edu	36	4	130077420	130077420	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144643	exon18	c.C1669T	p.R557C	.	.	.
SCLT1	132320	broad.mit.edu	36	4	130132775	130132775	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144643	exon9	c.T683G	p.L228R	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13180743	13180743	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148894	exon26	c.C9146T	p.A3049V	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134303582	134303582	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032961	exon4	c.G2798A	p.G933D	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138669384	138669384	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019035	exon2	c.A2528G	p.Y843C	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138672433	138672433	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019035	exon1	c.G260T	p.S87I	.	.	.
SMARCA5	8467	broad.mit.edu	36	4	144667061	144667061	+	Silent	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003601	exon6	c.A799C	p.R267R	.	.	.
GYPE	2996	broad.mit.edu	36	4	145017398	145017398	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002102	exon3	c.T197C	p.V66A	.	.	.
PRMT10	90826	broad.mit.edu	36	4	148779285	148779285	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138364	exon12	c.G2386T	p.E796X	.	.	.
C1QTNF7	114905	broad.mit.edu	36	4	15053315	15053315	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031911	exon3	c.G664A	p.D222N	.	.	.
LRBA	987	broad.mit.edu	36	4	151993137	151993137	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006726	exon23	c.G3175A	p.A1059T	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153552365	153552365	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033632	exon2	c.G41A	p.R14Q	.	.	.
TMEM154	201799	broad.mit.edu	36	4	153793338	153793338	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152680	exon2	c.T256G	p.L86V	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154752997	154752997	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015196	exon26	c.G3559A	p.V1187I	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154777046	154777046	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015196	exon35	c.C4698T	p.V1566V	.	.	.
TLR2	7097	broad.mit.edu	36	4	154844009	154844009	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003264	exon3	c.G500T	p.R167I	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155438796	155438796	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017639	exon18	c.G4755T	p.Q1585H	.	.	.
RBM46	166863	broad.mit.edu	36	4	155939698	155939698	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144979	exon4	c.G934T	p.E312X	.	.	.
GUCY1B3	2983	broad.mit.edu	36	4	156936037	156936037	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000857	exon7	c.C821T	p.T274I	.	.	.
GRIA2	2891	broad.mit.edu	36	4	158476440	158476440	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083620	exon10	c.G1293A	p.T431T	.	.	.
GRIA2	2891	broad.mit.edu	36	4	158503528	158503528	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083620	exon15	c.G2393A	p.R798Q	.	.	.
TMEM144	55314	broad.mit.edu	36	4	159353337	159353337	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018342	exon3	c.G68A	p.G23D	.	.	.
PPID	5481	broad.mit.edu	36	4	159859850	159859850	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005038	exon3	c.A265C	p.N89H	.	.	.
FNIP2	57600	broad.mit.edu	36	4	160036397	160036397	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020840	exon16	c.A3196C	p.S1066R	.	.	.
RAPGEF2	9693	broad.mit.edu	36	4	160483789	160483789	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014247	exon15	c.G2644A	p.E882K	.	.	.
PALLD	23022	broad.mit.edu	36	4	170082787	170082787	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016081	exon19	c.C3290T	p.A1097V	.	.	.
NEK1	4750	broad.mit.edu	36	4	170748475	170748475	+	Missense_Mutation	SNP	G	T	T	rs56850122	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199400	exon5	c.C373A	p.L125I	.	.	.
GALNTL6	442117	broad.mit.edu	36	4	174109862	174109862	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001034845	exon10	c.G1249A	p.A417T	.	.	.
SCRG1	11341	broad.mit.edu	36	4	174549027	174549027	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007281	exon2	c.T114C	p.C38C	.	.	.
GLRA3	8001	broad.mit.edu	36	4	175801547	175801547	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042543	exon9	c.C1315A	p.L439I	.	.	.
GPM6A	2823	broad.mit.edu	36	4	176809980	176809980	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201591	exon4	c.T540A	p.F180L	.	.	.
VEGFC	7424	broad.mit.edu	36	4	177846002	177846002	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005429	exon5	c.G778T	p.E260X	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183839985	183839985	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080477	exon10	c.C1859A	p.S620Y	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183912610	183912610	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080477	exon21	c.T4096C	p.L1366L	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183950636	183950636	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080477	exon25	c.C5817A	p.F1939L	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183950930	183950930	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080477	exon25	c.G6111A	p.T2037T	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183951053	183951053	+	Silent	SNP	G	A	A	rs61746883	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080477	exon25	c.G6234A	p.T2078T	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183951706	183951706	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080477	exon25	c.C6887T	p.S2296L	.	.	.
MLF1IP	79682	broad.mit.edu	36	4	185853533	185853533	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024629	exon13	c.T1160G	p.L387R	.	.	.
SLIT2	9353	broad.mit.edu	36	4	20152292	20152292	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004787	exon20	c.G2095T	p.E699X	.	.	.
SLIT2	9353	broad.mit.edu	36	4	20229652	20229652	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004787	exon37	c.C4512T	p.F1504F	.	.	.
PI4K2B	55300	broad.mit.edu	36	4	24863063	24863063	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018323	exon2	c.G291T	p.M97I	.	.	.
RBPJ	3516	broad.mit.edu	36	4	26016906	26016906	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203284	exon4	c.G68A	p.R23Q	.	.	.
RBPJ	3516	broad.mit.edu	36	4	26040655	26040655	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203284	exon10	c.T923C	p.I308T	.	.	.
NOP14	8602	broad.mit.edu	36	4	2929197	2929197	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003703	exon2	c.C264T	p.F88F	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35802946	35802946	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015230	exon22	c.G3679T	p.A1227S	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35855891	35855891	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015230	exon9	c.T1810G	p.F604V	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35865577	35865577	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015230	exon8	c.G1569A	p.S523S	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35890490	35890490	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015230	exon5	c.G1056T	p.K352N	.	.	.
TLR10	81793	broad.mit.edu	36	4	38451681	38451681	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030956	exon4	c.A1926G	p.E642E	.	.	.
UGDH	7358	broad.mit.edu	36	4	39199413	39199413	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184700	exon2	c.G115T	p.E39X	.	.	.
SLC30A9	10463	broad.mit.edu	36	4	41782860	41782860	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006345	exon18	c.G1667A	p.R556Q	.	.	.
SHISA3	152573	broad.mit.edu	36	4	42097924	42097924	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080505	exon2	c.G416A	p.R139H	.	.	.
ZNF721	170960	broad.mit.edu	36	4	426610	426610	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133474	exon3	c.G1646T	p.R549I	.	.	.
LYAR	55646	broad.mit.edu	36	4	4321236	4321236	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145725	exon9	c.C927A	p.F309L	.	.	.
ATP10D	57205	broad.mit.edu	36	4	47209538	47209538	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020453	exon2	c.G224A	p.R75Q	.	.	.
CNGA1	1259	broad.mit.edu	36	4	47633277	47633277	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000087	exon11	c.A1991C	p.K664T	.	.	.
CNGA1	1259	broad.mit.edu	36	4	47637561	47637561	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000087	exon10	c.G640A	p.D214N	.	.	.
TEC	7006	broad.mit.edu	36	4	47842250	47842250	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003215	exon13	c.C1185T	p.V395V	.	.	.
TEC	7006	broad.mit.edu	36	4	47867065	47867065	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003215	exon5	c.A411C	p.E137D	.	.	.
USP46	64854	broad.mit.edu	36	4	53159619	53159619	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022832	exon8	c.C931T	p.R311C	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54822077	54822077	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006206	exon3	c.A108G	p.E36E	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54839317	54839317	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006206	exon15	c.C2034A	p.F678L	.	.	.
REST	5978	broad.mit.edu	36	4	57472113	57472113	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193508	exon2	c.G552T	p.K184N	.	.	.
CRMP1	1400	broad.mit.edu	36	4	5881135	5881135	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001313	exon12	c.C1443T	p.R481R	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62362155	62362155	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015236	exon6	c.C1229A	p.S410Y	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62586097	62586097	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015236	exon21	c.T3441C	p.S1147S	.	.	.
EPHA5	2044	broad.mit.edu	36	4	65962724	65962724	+	Silent	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004439	exon7	c.T1560G	p.S520S	.	.	.
TMPRSS11F	389208	broad.mit.edu	36	4	68613029	68613029	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207407	exon8	c.C984T	p.F328F	.	.	.
TMPRSS11F	389208	broad.mit.edu	36	4	68613192	68613192	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207407	exon8	c.G821A	p.R274Q	.	.	.
TMPRSS11B	132724	broad.mit.edu	36	4	68777174	68777174	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182502	exon9	c.G970T	p.E324X	.	.	.
UGT2B17	7367	broad.mit.edu	36	4	69113979	69113979	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077	exon2	c.G779A	p.R260Q	.	.	.
UGT2B7	7364	broad.mit.edu	36	4	69997203	69997203	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001074	exon1	c.T376C	p.F126L	.	.	.
UGT2A1	10941	broad.mit.edu	36	4	70547321	70547321	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006798	exon1	c.A631C	p.R211R	.	.	.
ENAM	10117	broad.mit.edu	36	4	71727461	71727461	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031889	exon9	c.T1454G	p.F485C	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73633394	73633394	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014243	exon3	c.C169A	p.L57I	.	.	.
ALB	213	broad.mit.edu	36	4	74498038	74498038	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000477	exon8	c.C881T	p.S294L	.	.	.
ALB	213	broad.mit.edu	36	4	74504217	74504217	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000477	exon13	c.G1782T	p.E594D	.	.	.
ART3	419	broad.mit.edu	36	4	77222593	77222593	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001179	exon3	c.G662T	p.R221I	.	.	.
CCDC158	339965	broad.mit.edu	36	4	77466135	77466135	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042784	exon22	c.C3056T	p.S1019F	.	.	.
CNOT6L	246175	broad.mit.edu	36	4	78882391	78882391	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144571	exon8	c.C800A	p.S267X	.	.	.
C4orf22	255119	broad.mit.edu	36	4	82085100	82085100	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152770	exon5	c.C589A	p.L197I	.	.	.
BMP3	651	broad.mit.edu	36	4	82186629	82186629	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001201	exon2	c.C1030T	p.R344W	.	.	.
THAP9	79725	broad.mit.edu	36	4	84046695	84046695	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024672	exon3	c.G471T	p.K157N	.	.	.
ACOX3	8310	broad.mit.edu	36	4	8449676	8449676	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003501	exon9	c.C944T	p.A315V	.	.	.
ACOX3	8310	broad.mit.edu	36	4	8452276	8452276	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003501	exon8	c.C780T	p.F260F	.	.	.
AGPAT9	84803	broad.mit.edu	36	4	84721827	84721827	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032717	exon3	c.C297A	p.F99L	.	.	.
CDS1	1040	broad.mit.edu	36	4	85757828	85757828	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001263	exon4	c.A430C	p.T144P	.	.	.
CDS1	1040	broad.mit.edu	36	4	85774036	85774036	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001263	exon7	c.C642T	p.F214F	.	.	.
MAPK10	5602	broad.mit.edu	36	4	87242142	87242142	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138981	exon2	c.C58T	p.R20X	.	.	.
AFF1	4299	broad.mit.edu	36	4	88271980	88271980	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166693	exon18	c.C3113A	p.S1038X	.	.	.
ABCG2	9429	broad.mit.edu	36	4	89237749	89237749	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004827	exon13	c.G1527T	p.M509I	.	.	.
ABCG2	9429	broad.mit.edu	36	4	89241417	89241417	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004827	exon11	c.G1356T	p.K452N	.	.	.
HERC6	55008	broad.mit.edu	36	4	89548731	89548731	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017912	exon11	c.A1306G	p.T436A	.	.	.
HERC3	8916	broad.mit.edu	36	4	89818247	89818247	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014606	exon19	c.T2135C	p.V712A	.	.	.
FAM13A	10144	broad.mit.edu	36	4	90078270	90078270	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014883	exon5	c.A751G	p.I251V	.	.	.
FAM190A	401145	broad.mit.edu	36	4	91448893	91448893	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145065	exon2	c.G435T	p.K145N	.	.	.
SLC2A9	56606	broad.mit.edu	36	4	9445699	9445699	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001290	exon12	c.C1236A	p.F412L	.	.	.
SMARCAD1	56916	broad.mit.edu	36	4	95418821	95418821	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128429	exon18	c.G2210A	p.R737Q	.	.	.
BMPR1B	658	broad.mit.edu	36	4	96288996	96288996	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001203	exon11	c.A1151G	p.D384G	.	.	.
UNC5C	8633	broad.mit.edu	36	4	96325268	96325268	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003728	exon13	c.G2239A	p.D747N	.	.	.
PDHA2	5161	broad.mit.edu	36	4	96981118	96981118	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005390	exon1	c.A794C	p.K265T	.	.	.
C4orf37	285555	broad.mit.edu	36	4	99274598	99274598	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174952	exon2	c.G145T	p.E49X	.	.	.
RAP1GDS1	5910	broad.mit.edu	36	4	99483317	99483317	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100428	exon3	c.G120A	p.T40T	.	.	.
XKRX	402415	broad.mit.edu	36	X	100056130	100056130	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_212559	exon3	c.C1203A	p.F401L	.	.	.
DRP2	1821	broad.mit.edu	36	X	100383979	100383979	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001939	exon8	c.G838T	p.E280X	.	.	.
TAF7L	54457	broad.mit.edu	36	X	100420664	100420664	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168474	exon7	c.G478T	p.E160X	.	.	.
WWC3	55841	broad.mit.edu	36	X	10045339	10045339	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015691	exon11	c.G1240A	p.D414N	.	.	.
GPRASP1	9737	broad.mit.edu	36	X	101799421	101799421	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099411	exon3	c.C3924A	p.F1308L	.	.	.
TMEM31	203562	broad.mit.edu	36	X	102855196	102855196	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182541	exon3	c.C121T	p.R41X	.	.	.
PLP1	5354	broad.mit.edu	36	X	102927315	102927315	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199478	exon2	c.C153A	p.F51L	.	.	.
ESX1	80712	broad.mit.edu	36	X	103385532	103385532	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153448	exon2	c.G465T	p.E155D	.	.	.
NRK	203447	broad.mit.edu	36	X	105053838	105053838	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198465	exon18	c.G2683A	p.A895T	.	.	.
NRK	203447	broad.mit.edu	36	X	105077109	105077109	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198465	exon26	c.G4350T	p.K1450N	.	.	.
SERPINA7	6906	broad.mit.edu	36	X	105167103	105167103	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000354	exon2	c.G603T	p.V201V	.	.	.
CLDN2	9075	broad.mit.edu	36	X	106058329	106058329	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020384	exon2	c.G215A	p.G72D	.	.	.
GUCY2F	2986	broad.mit.edu	36	X	108560197	108560197	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001522	exon8	c.G1786A	p.E596K	.	.	.
CHRDL1	91851	broad.mit.edu	36	X	109811493	109811493	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143981	exon10	c.C1029A	p.F343L	.	.	.
CHRDL1	91851	broad.mit.edu	36	X	109889616	109889616	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143981	exon4	c.G230A	p.R77Q	.	.	.
ARHGAP6	395	broad.mit.edu	36	X	11070299	11070299	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013423	exon12	c.C1623T	p.S541S	.	.	.
ARHGAP6	395	broad.mit.edu	36	X	11072281	11072281	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013423	exon11	c.A1307C	p.D436A	.	.	.
AGTR2	186	broad.mit.edu	36	X	115218025	115218025	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000686	exon3	c.G464T	p.R155I	.	.	.
SLC6A14	11254	broad.mit.edu	36	X	115499591	115499591	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007231	exon10	c.C1359T	p.G453G	.	.	.
KLHL13	90293	broad.mit.edu	36	X	116927408	116927408	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168300	exon5	c.G1232A	p.R411Q	.	.	.
DOCK11	139818	broad.mit.edu	36	X	117661456	117661456	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144658	exon40	c.T4269G	p.L1423L	.	.	.
KIAA1210	57481	broad.mit.edu	36	X	118123019	118123019	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020721	exon7	c.G1032T	p.K344N	.	.	.
KIAA1210	57481	broad.mit.edu	36	X	118168449	118168449	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020721	exon1	c.C122T	p.A41V	.	.	.
UPF3B	65109	broad.mit.edu	36	X	118855969	118855969	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080632	exon10	c.C1081T	p.R361X	.	.	.
UPF3B	65109	broad.mit.edu	36	X	118856470	118856470	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080632	exon9	c.G895T	p.E299X	.	.	.
RNF113A	7737	broad.mit.edu	36	X	118889220	118889220	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006978	exon1	c.G385A	p.D129N	.	.	.
FAM70A	55026	broad.mit.edu	36	X	119278773	119278773	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001104545	exon7	c.C706T	p.P236S	.	.	.
FAM70A	55026	broad.mit.edu	36	X	119322266	119322266	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001104545	exon2	c.A167T	p.N56I	.	.	.
LAMP2	3920	broad.mit.edu	36	X	119465813	119465813	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002294	exon5	c.C652A	p.P218T	.	.	.
STAG2	10735	broad.mit.edu	36	X	122992611	122992611	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042750	exon5	c.C243T	p.N81N	.	.	.
DCAF12L2	340578	broad.mit.edu	36	X	125126299	125126299	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013628	exon1	c.G1290A	p.A430A	.	.	.
FRMPD4	9758	broad.mit.edu	36	X	12630048	12630048	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014728	exon10	c.C1068T	p.I356I	.	.	.
TLR7	51284	broad.mit.edu	36	X	12814242	12814242	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016562	exon3	c.C694A	p.L232I	.	.	.
SMARCA1	6594	broad.mit.edu	36	X	128442758	128442758	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003069	exon18	c.G2303A	p.R768H	.	.	.
SMARCA1	6594	broad.mit.edu	36	X	128477638	128477638	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003069	exon4	c.G443A	p.R148H	.	.	.
OCRL	4952	broad.mit.edu	36	X	128537648	128537648	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001587	exon17	c.C1807T	p.P603S	.	.	.
XPNPEP2	7512	broad.mit.edu	36	X	128713910	128713910	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003399	exon10	c.C925T	p.R309C	.	.	.
ELF4	2000	broad.mit.edu	36	X	129028628	129028628	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001421	exon9	c.A1741G	p.T581A	.	.	.
AIFM1	9131	broad.mit.edu	36	X	129101475	129101475	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145812	exon8	c.G822T	p.K274N	.	.	.
ZNF280C	55609	broad.mit.edu	36	X	129166987	129166987	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017666	exon17	c.G2126A	p.R709H	.	.	.
ZNF280C	55609	broad.mit.edu	36	X	129189365	129189365	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017666	exon11	c.A1220C	p.K407T	.	.	.
ZNF280C	55609	broad.mit.edu	36	X	129208542	129208542	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017666	exon3	c.G150A	p.E50E	.	.	.
ENOX2	10495	broad.mit.edu	36	X	129599007	129599007	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182314	exon12	c.C1275T	p.L425L	.	.	.
ARHGAP36	158763	broad.mit.edu	36	X	130046009	130046009	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144967	exon5	c.C695T	p.A232V	.	.	.
FRMD7	90167	broad.mit.edu	36	X	131040401	131040401	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194277	exon12	c.C1325A	p.S442Y	.	.	.
MBNL3	55796	broad.mit.edu	36	X	131352783	131352783	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170704	exon5	c.G256T	p.E86X	.	.	.
USP26	83844	broad.mit.edu	36	X	131987344	131987344	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031907	exon1	c.C2571T	p.Y857Y	.	.	.
USP26	83844	broad.mit.edu	36	X	131988154	131988154	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031907	exon1	c.A1761C	p.S587S	.	.	.
USP26	83844	broad.mit.edu	36	X	131989504	131989504	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031907	exon1	c.G411T	p.E137D	.	.	.
GPC3	2719	broad.mit.edu	36	X	132558277	132558277	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164618	exon7	c.C1382A	p.S461Y	.	.	.
CCDC160	347475	broad.mit.edu	36	X	133207473	133207473	+	Read-through	SNP	A	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001101357	exon2	c.A977T	p.X326L	.	.	.
PLAC1	10761	broad.mit.edu	36	X	133528255	133528255	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021796	exon3	c.T124G	p.F42V	.	.	.
FAM122B	159090	broad.mit.edu	36	X	133750935	133750935	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170756	exon4	c.G262T	p.E88X	.	.	.
ZNF449	203523	broad.mit.edu	36	X	134308830	134308830	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152695	exon2	c.G121A	p.A41T	.	.	.
SAGE1	55511	broad.mit.edu	36	X	134821553	134821553	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018666	exon18	c.G2296A	p.D766N	.	.	.
MAP7D3	79649	broad.mit.edu	36	X	135135828	135135828	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001173517	exon12	c.C1940T	p.A647V	.	.	.
GPR112	139378	broad.mit.edu	36	X	135256173	135256173	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153834	exon6	c.C2642A	p.S881Y	.	.	.
GPR112	139378	broad.mit.edu	36	X	135257472	135257472	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153834	exon6	c.C3941T	p.S1314L	.	.	.
HTATSF1	27336	broad.mit.edu	36	X	135412655	135412655	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014500	exon5	c.G623A	p.G208D	.	.	.
GPR101	83550	broad.mit.edu	36	X	135941391	135941391	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054021	exon1	c.G109A	p.V37M	.	.	.
OFD1	8481	broad.mit.edu	36	X	13674421	13674421	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003611	exon7	c.G580A	p.E194K	.	.	.
OFD1	8481	broad.mit.edu	36	X	13674822	13674822	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003611	exon8	c.G657T	p.L219F	.	.	.
MCF2	4168	broad.mit.edu	36	X	138506461	138506461	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099855	exon22	c.A2370C	p.E790D	.	.	.
ATP11C	286410	broad.mit.edu	36	X	138712114	138712114	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010986	exon7	c.C615A	p.I205I	.	.	.
CSF2RA	1438	broad.mit.edu	36	X	1388404	1388404	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172246	exon11	c.C1056A	p.I352I	.	.	.
MAGEC3	139081	broad.mit.edu	36	X	140797171	140797171	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138702	exon4	c.C832A	p.L278I	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140821039	140821039	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005462	exon4	c.G183T	p.E61D	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140821524	140821524	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005462	exon4	c.G668T	p.S223I	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140823734	140823734	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005462	exon4	c.C2878T	p.L960F	.	.	.
SLITRK4	139065	broad.mit.edu	36	X	142544922	142544922	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173078	exon2	c.G1669T	p.E557X	.	.	.
SLITRK2	84631	broad.mit.edu	36	X	144713784	144713784	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144006	exon3	c.G2149T	p.E717X	.	.	.
AFF2	2334	broad.mit.edu	36	X	147845784	147845784	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002025	exon11	c.C2509T	p.R837C	.	.	.
MOSPD2	158747	broad.mit.edu	36	X	14825156	14825156	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152581	exon5	c.G352T	p.D118Y	.	.	.
TMEM185A	84548	broad.mit.edu	36	X	148498307	148498307	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032508	exon3	c.G226T	p.E76X	.	.	.
TMEM185A	84548	broad.mit.edu	36	X	148500772	148500772	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032508	exon2	c.C214T	p.R72X	.	.	.
MTMR1	8776	broad.mit.edu	36	X	149669875	149669875	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003828	exon13	c.G1558A	p.E520K	.	.	.
CNGA2	1260	broad.mit.edu	36	X	150662376	150662376	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005140	exon7	c.C745T	p.R249C	.	.	.
MAGEA3	4102	broad.mit.edu	36	X	151686189	151686189	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005362	exon3	c.G634T	p.E212X	.	.	.
PIGA	5277	broad.mit.edu	36	X	15249636	15249636	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020473	exon5	c.T666C	p.D222D	.	.	.
L1CAM	3897	broad.mit.edu	36	X	152783516	152783516	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143963	exon21	c.C2985T	p.G995G	.	.	.
FIGF	2277	broad.mit.edu	36	X	15286215	15286215	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004469	exon3	c.G323T	p.R108I	.	.	.
TKTL1	8277	broad.mit.edu	36	X	153202428	153202428	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145933	exon8	c.T1142C	p.I381T	.	.	.
DKC1	1736	broad.mit.edu	36	X	153656735	153656735	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001363	exon13	c.C1331T	p.T444I	.	.	.
F8	2157	broad.mit.edu	36	X	153811550	153811550	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000132	exon14	c.A3709G	p.T1237A	.	.	.
RAB39B	116442	broad.mit.edu	36	X	154143611	154143611	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_171998	exon2	c.G313C	p.E105Q	.	.	.
SPRY3	10251	broad.mit.edu	36	X	154657068	154657068	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005840	exon2	c.G341A	p.R114Q	.	.	.
MAP7D2	256714	broad.mit.edu	36	X	19938893	19938893	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168465	exon16	c.C2271T	p.I757I	.	.	.
RPS6KA3	6197	broad.mit.edu	36	X	20132108	20132108	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004586	exon4	c.C278A	p.A93D	.	.	.
CNKSR2	22866	broad.mit.edu	36	X	21519092	21519092	+	Silent	SNP	T	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168649	exon14	c.T1542A	p.I514I	.	.	.
ACOT9	23597	broad.mit.edu	36	X	23661252	23661252	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037171	exon4	c.G149A	p.R50Q	.	.	.
CXorf58	254158	broad.mit.edu	36	X	23866649	23866649	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152761	exon8	c.C850A	p.L284M	.	.	.
KLHL15	80311	broad.mit.edu	36	X	23917051	23917051	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030624	exon4	c.T723G	p.F241L	.	.	.
POLA1	5422	broad.mit.edu	36	X	24661848	24661848	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016937	exon17	c.G1809T	p.E603D	.	.	.
IL1RAPL1	11141	broad.mit.edu	36	X	29211041	29211041	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014271	exon3	c.C148T	p.R50X	.	.	.
IL1RAPL1	11141	broad.mit.edu	36	X	29324416	29324416	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014271	exon4	c.A483C	p.E161D	.	.	.
TAB3	257397	broad.mit.edu	36	X	30774660	30774660	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152787	exon8	c.G1733T	p.R578I	.	.	.
DMD	1756	broad.mit.edu	36	X	31372659	31372659	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004021	exon17	c.C1564T	p.R522X	.	.	.
DMD	1756	broad.mit.edu	36	X	32271284	32271284	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004011	exon12	c.C1604A	p.S535Y	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3250135	3250135	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015419	exon5	c.G3591A	p.E1197E	.	.	.
DMD	1756	broad.mit.edu	36	X	32572303	32572303	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004006	exon11	c.C1198A	p.L400I	.	.	.
FAM47A	158724	broad.mit.edu	36	X	34060121	34060121	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203408	exon1	c.G196A	p.E66K	.	.	.
CXorf22	170063	broad.mit.edu	36	X	35903886	35903886	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152632	exon15	c.C2648T	p.A883V	.	.	.
XK	7504	broad.mit.edu	36	X	37472345	37472345	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021083	exon3	c.C1026A	p.I342I	.	.	.
CYBB	1536	broad.mit.edu	36	X	37536186	37536186	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000397	exon4	c.C271T	p.R91X	.	.	.
RPGR	6103	broad.mit.edu	36	X	38043293	38043293	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000328	exon10	c.C1105T	p.R369C	.	.	.
MID1IP1	58526	broad.mit.edu	36	X	38549261	38549261	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098791	exon2	c.G118A	p.D40N	.	.	.
BCOR	54880	broad.mit.edu	36	X	39799572	39799572	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001123383	exon12	c.C4632A	p.F1544L	.	.	.
USP9X	8239	broad.mit.edu	36	X	40881100	40881100	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039590	exon6	c.A535C	p.N179H	.	.	.
EFHC2	80258	broad.mit.edu	36	X	43979612	43979612	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025184	exon9	c.C1306T	p.R436C	.	.	.
ZNF673	55634	broad.mit.edu	36	X	46217239	46217239	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017776	exon6	c.G349A	p.E117K	.	.	.
ZNF674	641339	broad.mit.edu	36	X	46244458	46244458	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190417	exon6	c.A1495C	p.K499Q	.	.	.
PHF16	9767	broad.mit.edu	36	X	46802564	46802564	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014735	exon11	c.G1613T	p.R538I	.	.	.
CDK16	5127	broad.mit.edu	36	X	46968829	46968829	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006201	exon3	c.C304T	p.R102C	.	.	.
ARAF	369	broad.mit.edu	36	X	47309432	47309432	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001654	exon5	c.T408C	p.C136C	.	.	.
ZNF81	347344	broad.mit.edu	36	X	47660458	47660458	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007137	exon5	c.G1469T	p.R490I	.	.	.
ZNF182	7569	broad.mit.edu	36	X	47721081	47721081	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006962	exon7	c.G1349T	p.R450I	.	.	.
WDR13	64743	broad.mit.edu	36	X	48343758	48343758	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166426	exon4	c.C355T	p.R119C	.	.	.
WDR13	64743	broad.mit.edu	36	X	48345413	48345413	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166426	exon6	c.C753A	p.A251A	.	.	.
GRIPAP1	56850	broad.mit.edu	36	X	48732429	48732429	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020137	exon7	c.C495A	p.F165L	.	.	.
CLCN5	1184	broad.mit.edu	36	X	49737964	49737964	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127899	exon11	c.G1254T	p.K418N	.	.	.
AKAP4	8852	broad.mit.edu	36	X	49848300	49848300	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003886	exon4	c.G258T	p.E86D	.	.	.
CCNB3	85417	broad.mit.edu	36	X	50070709	50070709	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033031	exon5	c.A2800C	p.N934H	.	.	.
NUDT11	55190	broad.mit.edu	36	X	51255890	51255890	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018159	exon1	c.C147T	p.G49G	.	.	.
PHF8	23133	broad.mit.edu	36	X	54057686	54057686	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184898	exon7	c.G632A	p.R211Q	.	.	.
WNK3	65267	broad.mit.edu	36	X	54354360	54354360	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002838	exon3	c.T627G	p.F209L	.	.	.
TSR2	90121	broad.mit.edu	36	X	54487676	54487676	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058163	exon5	c.G544T	p.D182Y	.	.	.
FGD1	2245	broad.mit.edu	36	X	54511995	54511995	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004463	exon5	c.C1141T	p.L381F	.	.	.
MAGED2	10916	broad.mit.edu	36	X	54858446	54858446	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201222	exon12	c.G1427A	p.R476Q	.	.	.
TRO	7216	broad.mit.edu	36	X	54973508	54973508	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039705	exon12	c.T3626C	p.F1209S	.	.	.
PFKFB1	5207	broad.mit.edu	36	X	54999362	54999362	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002625	exon7	c.G587T	p.R196I	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5821344	5821344	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020742	exon6	c.A1965G	p.K655K	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63328271	63328271	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152424	exon2	c.A1621C	p.N541H	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63328843	63328843	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152424	exon2	c.G1049A	p.R350K	.	.	.
ZC3H12B	340554	broad.mit.edu	36	X	64635823	64635823	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010888	exon3	c.C968A	p.S323Y	.	.	.
MSN	4478	broad.mit.edu	36	X	64868462	64868462	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002444	exon6	c.G589T	p.D197Y	.	.	.
HEPH	9843	broad.mit.edu	36	X	65396818	65396818	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130860	exon19	c.T3197G	p.F1066C	.	.	.
OPHN1	4983	broad.mit.edu	36	X	67338196	67338196	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002547	exon11	c.A1015G	p.T339A	.	.	.
OPHN1	4983	broad.mit.edu	36	X	67569436	67569436	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002547	exon2	c.G152T	p.R51I	.	.	.
IGBP1	3476	broad.mit.edu	36	X	69283360	69283360	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001551	exon4	c.A635G	p.D212G	.	.	.
RAB41	347517	broad.mit.edu	36	X	69419406	69419406	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001032726	exon3	c.G210T	p.K70N	.	.	.
KIF4A	24137	broad.mit.edu	36	X	69435702	69435702	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012310	exon5	c.A441C	p.E147D	.	.	.
GDPD2	54857	broad.mit.edu	36	X	69561633	69561633	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017711	exon2	c.A74C	p.K25T	.	.	.
TEX11	56159	broad.mit.edu	36	X	69747111	69747111	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003811	exon22	c.G1804T	p.E602X	.	.	.
MED12	9968	broad.mit.edu	36	X	70277430	70277430	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005120	exon42	c.C6265T	p.R2089W	.	.	.
NLGN3	54413	broad.mit.edu	36	X	70300842	70300842	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166660	exon4	c.C732A	p.V244V	.	.	.
TAF1	6872	broad.mit.edu	36	X	70533939	70533939	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138923	exon23	c.G3515A	p.R1172Q	.	.	.
OGT	8473	broad.mit.edu	36	X	70699527	70699527	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181673	exon16	c.A2053G	p.K685E	.	.	.
ERCC6L	54821	broad.mit.edu	36	X	71343828	71343828	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017669	exon2	c.G1514A	p.R505Q	.	.	.
PHKA1	5255	broad.mit.edu	36	X	71719092	71719092	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172436	exon29	c.C3163A	p.L1055M	.	.	.
ABCB7	22	broad.mit.edu	36	X	74205642	74205642	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004299	exon12	c.C1587T	p.S529S	.	.	.
BRWD3	254065	broad.mit.edu	36	X	79835116	79835116	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153252	exon28	c.C3242A	p.S1081Y	.	.	.
BRWD3	254065	broad.mit.edu	36	X	79870908	79870908	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153252	exon14	c.C1385A	p.S462Y	.	.	.
BRWD3	254065	broad.mit.edu	36	X	79887830	79887830	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153252	exon7	c.T485C	p.F162S	.	.	.
POU3F4	5456	broad.mit.edu	36	X	82650508	82650508	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000307	exon1	c.G520A	p.E174K	.	.	.
CYLC1	1538	broad.mit.edu	36	X	83014822	83014822	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021118	exon4	c.G450T	p.E150D	.	.	.
CYLC1	1538	broad.mit.edu	36	X	83015700	83015700	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021118	exon4	c.C1328A	p.S443Y	.	.	.
RPS6KA6	27330	broad.mit.edu	36	X	83248635	83248635	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014496	exon14	c.C1181T	p.S394F	.	.	.
HDX	139324	broad.mit.edu	36	X	83610560	83610560	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177479	exon4	c.G827T	p.R276I	.	.	.
DACH2	117154	broad.mit.edu	36	X	85956387	85956387	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053281	exon10	c.G1578A	p.K526K	.	.	.
KLHL4	56062	broad.mit.edu	36	X	86659891	86659891	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_057162	exon1	c.G339T	p.K113N	.	.	.
CPXCR1	53336	broad.mit.edu	36	X	87895961	87895961	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184771	exon3	c.G890T	p.S297I	.	.	.
FAM9B	171483	broad.mit.edu	36	X	8957410	8957410	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_205849	exon5	c.G331T	p.E111X	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91018753	91018753	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032968	exon2	c.C858A	p.F286L	.	.	.
NAP1L3	4675	broad.mit.edu	36	X	92814212	92814212	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004538	exon1	c.G748T	p.E250X	.	.	.
FAM133A	286499	broad.mit.edu	36	X	92851752	92851752	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171110	exon5	c.G678A	p.K226K	.	.	.
DIAPH2	1730	broad.mit.edu	36	X	96099787	96099787	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006729	exon16	c.G1919T	p.R640I	.	.	.
GPR143	4935	broad.mit.edu	36	X	9671655	9671655	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000273	exon6	c.A717G	p.G239G	.	.	.
PCDH19	57526	broad.mit.edu	36	X	99549942	99549942	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105243	exon1	c.G310A	p.E104K	.	.	.
LONRF2	164832	broad.mit.edu	36	2	100278405	100278405	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198461	exon8	c.G1519T	p.E507X	.	.	.
MAP4K4	9448	broad.mit.edu	36	2	101806882	101806882	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145687	exon4	c.A241C	p.N81H	.	.	.
IL1R2	7850	broad.mit.edu	36	2	101991482	101991482	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173343	exon2	c.T13C	p.Y5H	.	.	.
IL18R1	8809	broad.mit.edu	36	2	102350822	102350822	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003855	exon2	c.G164A	p.S55N	.	.	.
IL18RAP	8807	broad.mit.edu	36	2	102434988	102434988	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003853	exon12	c.T1715A	p.L572H	.	.	.
SLC9A4	389015	broad.mit.edu	36	2	102507974	102507974	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011552	exon10	c.G1878T	p.E626D	.	.	.
ODC1	4953	broad.mit.edu	36	2	10498320	10498320	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002539	exon12	c.C1367T	p.S456L	.	.	.
C2orf49	79074	broad.mit.edu	36	2	105325843	105325843	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024093	exon3	c.C373T	p.R125X	.	.	.
SULT1C2	6819	broad.mit.edu	36	2	108288321	108288321	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001056	exon7	c.C616T	p.R206W	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108718460	108718460	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006267	exon5	c.A446C	p.K149T	.	.	.
KCNF1	3754	broad.mit.edu	36	2	10971097	10971097	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002236	exon1	c.T1094C	p.I365T	.	.	.
ANAPC1	64682	broad.mit.edu	36	2	112354868	112354868	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022662	exon2	c.G6A	p.S2S	.	.	.
TTL	150465	broad.mit.edu	36	2	112968368	112968368	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153712	exon3	c.G414T	p.K138N	.	.	.
CKAP2L	150468	broad.mit.edu	36	2	113230540	113230540	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152515	exon4	c.G879T	p.K293N	.	.	.
DPP10	57628	broad.mit.edu	36	2	116289013	116289013	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178036	exon21	c.G1725T	p.K575N	.	.	.
GREB1	9687	broad.mit.edu	36	2	11689537	11689537	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014668	exon27	c.G4663A	p.E1555K	.	.	.
LPIN1	23175	broad.mit.edu	36	2	11877076	11877076	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145693	exon18	c.G2310T	p.K770N	.	.	.
LPIN1	23175	broad.mit.edu	36	2	11878056	11878056	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145693	exon19	c.G2478A	p.E826E	.	.	.
PTPN4	5775	broad.mit.edu	36	2	120419219	120419219	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002830	exon16	c.C1448T	p.S483L	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	125237821	125237821	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130773	exon15	c.T2334C	p.I778I	.	.	.
TRIB2	28951	broad.mit.edu	36	2	12798291	12798291	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021643	exon3	c.G952A	p.A318T	.	.	.
UGGT1	56886	broad.mit.edu	36	2	128619969	128619969	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020120	exon18	c.A1974C	p.K658N	.	.	.
GPR148	344561	broad.mit.edu	36	2	131204072	131204072	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207364	exon1	c.A878G	p.D293G	.	.	.
CCNT2	905	broad.mit.edu	36	2	135426740	135426740	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058241	exon8	c.C763T	p.R255X	.	.	.
YSK4	80122	broad.mit.edu	36	2	135460258	135460258	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025052	exon7	c.G2654A	p.R885Q	.	.	.
LCT	3938	broad.mit.edu	36	2	136282671	136282671	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002299	exon8	c.C3716T	p.S1239L	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137746594	137746594	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080427	exon10	c.C2195A	p.S732Y	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140797955	140797955	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018557	exon81	c.C12491A	p.S4164Y	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141000283	141000283	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018557	exon48	c.G7869T	p.K2623N	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141463602	141463602	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018557	exon17	c.C2739T	p.S913S	.	.	.
LYPD6B	130576	broad.mit.edu	36	2	149779365	149779365	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177964	exon7	c.T519G	p.T173T	.	.	.
TNFAIP6	7130	broad.mit.edu	36	2	151944262	151944262	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007115	exon6	c.A803C	p.N268T	.	.	.
RIF1	55183	broad.mit.edu	36	2	152029721	152029721	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177664	exon30	c.C5441T	p.S1814F	.	.	.
NEB	4703	broad.mit.edu	36	2	152101984	152101984	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164507	exon141	c.G21115T	p.E7039X	.	.	.
NEB	4703	broad.mit.edu	36	2	152231154	152231154	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164507	exon41	c.A4727G	p.Y1576C	.	.	.
FMNL2	114793	broad.mit.edu	36	2	153193218	153193218	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052905	exon18	c.C2325T	p.I775I	.	.	.
NBAS	51594	broad.mit.edu	36	2	15475118	15475118	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015909	exon24	c.G2747T	p.R916I	.	.	.
UPP2	151531	broad.mit.edu	36	2	158686283	158686283	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135098	exon7	c.G742T	p.E248X	.	.	.
TANC1	85461	broad.mit.edu	36	2	159713967	159713967	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033394	exon6	c.T433G	p.L145V	.	.	.
WDSUB1	151525	broad.mit.edu	36	2	159847760	159847760	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152528	exon2	c.T67C	p.S23P	.	.	.
TANK	10010	broad.mit.edu	36	2	161800136	161800136	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199135	exon8	c.C1139T	p.S380L	.	.	.
PSMD14	10213	broad.mit.edu	36	2	161955905	161955905	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005805	exon9	c.T615G	p.I205M	.	.	.
GCG	2641	broad.mit.edu	36	2	162708870	162708870	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002054	exon5	c.C449A	p.S150Y	.	.	.
COBLL1	22837	broad.mit.edu	36	2	165260042	165260042	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014900	exon12	c.G2220T	p.K740N	.	.	.
SLC38A11	151258	broad.mit.edu	36	2	165473483	165473483	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173512	exon9	c.C774A	p.F258L	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165655251	165655251	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006922	exon28	c.C5658A	p.V1886V	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166606179	166606179	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165964	exon13	c.T2139G	p.F713L	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166612440	166612440	+	Silent	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165964	exon8	c.T1113G	p.A371A	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166791443	166791443	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002977	exon24	c.A4245C	p.K1415N	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166867862	166867862	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002977	exon7	c.T885C	p.S295S	.	.	.
SCN7A	6332	broad.mit.edu	36	2	167006424	167006424	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002976	exon14	c.G1885T	p.D629Y	.	.	.
SCN7A	6332	broad.mit.edu	36	2	167030281	167030281	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002976	exon8	c.A878C	p.E293A	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167804634	167804634	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199143	exon7	c.T981C	p.V327V	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167809351	167809351	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199144	exon7	c.A2537C	p.K846T	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167811248	167811248	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199144	exon7	c.T4434C	p.G1478G	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167823432	167823432	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199143	exon11	c.C2229T	p.N743N	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167823928	167823928	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199143	exon11	c.T2725G	p.F909V	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167823998	167823998	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199143	exon11	c.T2795G	p.F932C	.	.	.
LRP2	4036	broad.mit.edu	36	2	169693825	169693825	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004525	exon78	c.C13744A	p.L4582I	.	.	.
LRP2	4036	broad.mit.edu	36	2	169781051	169781051	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004525	exon35	c.C5784T	p.I1928I	.	.	.
LRP2	4036	broad.mit.edu	36	2	169835822	169835822	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004525	exon16	c.C2158T	p.R720C	.	.	.
FASTKD1	79675	broad.mit.edu	36	2	170111091	170111091	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024622	exon8	c.G1584T	p.M528I	.	.	.
PHOSPHO2	493911	broad.mit.edu	36	2	170265935	170265935	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199288	exon4	c.A208G	p.T70A	.	.	.
PDK1	5163	broad.mit.edu	36	2	173138008	173138008	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002610	exon5	c.A652C	p.S218R	.	.	.
RAD51AP2	729475	broad.mit.edu	36	2	17560423	17560423	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099218	exon1	c.C2741A	p.S914X	.	.	.
EVX2	344191	broad.mit.edu	36	2	176656561	176656561	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080458	exon1	c.G190T	p.E64X	.	.	.
SMC6	79677	broad.mit.edu	36	2	17765780	17765780	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142286	exon11	c.G853T	p.E285X	.	.	.
GEN1	348654	broad.mit.edu	36	2	17825486	17825486	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130009	exon14	c.C1526T	p.S509L	.	.	.
GEN1	348654	broad.mit.edu	36	2	17825793	17825793	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130009	exon14	c.A1833C	p.K611N	.	.	.
OSBPL6	114880	broad.mit.edu	36	2	178946960	178946960	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032523	exon15	c.C1493T	p.A498V	.	.	.
FKBP7	51661	broad.mit.edu	36	2	179051452	179051452	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181342	exon1	c.C21A	p.F7L	.	.	.
TTN	7273	broad.mit.edu	36	2	179107052	179107052	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon186	c.A75340G	p.T25114A	.	.	.
TTN	7273	broad.mit.edu	36	2	179133656	179133656	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.C58253T	p.S19418L	.	.	.
TTN	7273	broad.mit.edu	36	2	179135989	179135989	+	Missense_Mutation	SNP	C	T	T	rs72648217	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.G55920A	p.P18640P	.	.	.
TTN	7273	broad.mit.edu	36	2	179141203	179141203	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.G50706A	p.P16902P	.	.	.
TTN	7273	broad.mit.edu	36	2	179142492	179142492	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.C49417T	p.L16473L	.	.	.
TTN	7273	broad.mit.edu	36	2	179144685	179144685	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.A47224G	p.T15742A	.	.	.
TTN	7273	broad.mit.edu	36	2	179305163	179305163	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133378	exon54	c.C13046A	p.S4349Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179312946	179312946	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon45	c.G12170T	p.R4057I	.	.	.
ITGA4	3676	broad.mit.edu	36	2	182066348	182066348	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000885	exon11	c.T1205G	p.I402S	.	.	.
ITGA4	3676	broad.mit.edu	36	2	182102574	182102574	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000885	exon23	c.C2492A	p.S831Y	.	.	.
DNAJC10	54431	broad.mit.edu	36	2	183335758	183335758	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018981	exon22	c.C2250A	p.F750L	.	.	.
ZC3H15	55854	broad.mit.edu	36	2	187078466	187078466	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018471	exon7	c.C761A	p.S254Y	.	.	.
ZC3H15	55854	broad.mit.edu	36	2	187078739	187078739	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018471	exon8	c.C892T	p.R298C	.	.	.
ZSWIM2	151112	broad.mit.edu	36	2	187401445	187401445	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182521	exon9	c.C1413A	p.C471X	.	.	.
TFPI	7035	broad.mit.edu	36	2	188076638	188076638	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006287	exon2	c.G103T	p.E35X	.	.	.
GULP1	51454	broad.mit.edu	36	2	189160908	189160908	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016315	exon11	c.T830G	p.L277X	.	.	.
COL3A1	1281	broad.mit.edu	36	2	189563088	189563088	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000090	exon9	c.C712T	p.R238X	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191942579	191942579	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012223	exon12	c.C1099T	p.R367X	.	.	.
SDPR	8436	broad.mit.edu	36	2	192409265	192409265	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004657	exon2	c.C907T	p.R303X	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196313753	196313753	+	Silent	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018897	exon64	c.T11850G	p.L3950L	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196344806	196344806	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018897	exon61	c.C11256T	p.V3752V	.	.	.
HECW2	57520	broad.mit.edu	36	2	196788875	196788875	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020760	exon28	c.A4566C	p.R1522S	.	.	.
GTF3C3	9330	broad.mit.edu	36	2	197353587	197353587	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012086	exon9	c.G1159T	p.D387Y	.	.	.
SF3B1	23451	broad.mit.edu	36	2	197981046	197981046	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012433	exon9	c.G1160A	p.R387Q	.	.	.
MARS2	92935	broad.mit.edu	36	2	198279293	198279293	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138395	exon1	c.A919C	p.I307L	.	.	.
PLCL1	5334	broad.mit.edu	36	2	198658400	198658400	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006226	exon2	c.C1914A	p.F638L	.	.	.
C2orf69	205327	broad.mit.edu	36	2	200498649	200498649	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153689	exon2	c.A953C	p.K318T	.	.	.
SGOL2	151246	broad.mit.edu	36	2	201142788	201142788	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160046	exon6	c.G631T	p.E211X	.	.	.
INO80D	54891	broad.mit.edu	36	2	206577892	206577892	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017759	exon11	c.C2529A	p.I843I	.	.	.
LOC200726	200726	broad.mit.edu	36	2	207217374	207217374	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102659	exon2	c.C169A	p.L57I	.	.	.
DYTN	391475	broad.mit.edu	36	2	207272822	207272822	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001093730	exon7	c.C593A	p.S198Y	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208861781	208861781	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178000	exon7	c.G905A	p.R302Q	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208887270	208887270	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015040	exon14	c.A1704C	p.L568F	.	.	.
MAP2	4133	broad.mit.edu	36	2	210266557	210266557	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002374	exon7	c.T1418G	p.I473S	.	.	.
MAP2	4133	broad.mit.edu	36	2	210266729	210266729	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002374	exon7	c.G1590T	p.K530N	.	.	.
MAP2	4133	broad.mit.edu	36	2	210283081	210283081	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031847	exon9	c.T863C	p.V288A	.	.	.
APOB	338	broad.mit.edu	36	2	21083442	21083442	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000384	exon26	c.C9803T	p.S3268L	.	.	.
CPS1	1373	broad.mit.edu	36	2	211178131	211178131	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122634	exon7	c.G544T	p.E182X	.	.	.
CPS1	1373	broad.mit.edu	36	2	211181396	211181396	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122634	exon9	c.C906T	p.V302V	.	.	.
SPAG16	79582	broad.mit.edu	36	2	213913135	213913135	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024532	exon6	c.A540C	p.K180N	.	.	.
BARD1	580	broad.mit.edu	36	2	215354423	215354423	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000465	exon4	c.G420T	p.K140N	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215584455	215584455	+	Nonsense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173076	exon17	c.T2285G	p.L762X	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215598718	215598718	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173076	exon11	c.G1211A	p.R404Q	.	.	.
FN1	2335	broad.mit.edu	36	2	215967677	215967677	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_212476	exon24	c.T3615C	p.G1205G	.	.	.
XRCC5	7520	broad.mit.edu	36	2	216700534	216700534	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021141	exon8	c.A829C	p.T277P	.	.	.
SPEG	10290	broad.mit.edu	36	2	220037524	220037524	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001173476	exon4	c.C284T	p.A95V	.	.	.
SCG2	7857	broad.mit.edu	36	2	224172179	224172179	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003469	exon2	c.C66T	p.I22I	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	225981970	225981970	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020864	exon2	c.C130T	p.R44X	.	.	.
WDR69	164781	broad.mit.edu	36	2	228491770	228491770	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178821	exon11	c.G1004T	p.R335I	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230402183	230402183	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004238	exon7	c.C1276T	p.L426F	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233412870	233412870	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103148	exon22	c.C2816A	p.S939X	.	.	.
DGKD	8527	broad.mit.edu	36	2	234007813	234007813	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152879	exon4	c.G397T	p.E133X	.	.	.
UGT1A8	54576	broad.mit.edu	36	2	234191436	234191436	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019076	exon1	c.G344T	p.G115V	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237961501	237961501	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_057167	exon3	c.G157A	p.A53T	.	.	.
RBM44	375316	broad.mit.edu	36	2	238390571	238390571	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080504	exon3	c.G273T	p.E91D	.	.	.
ASXL2	55252	broad.mit.edu	36	2	25832434	25832434	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018263	exon9	c.C993A	p.F331L	.	.	.
KIF3C	3797	broad.mit.edu	36	2	26058110	26058110	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002254	exon1	c.G181T	p.D61Y	.	.	.
HADHA	3030	broad.mit.edu	36	2	26271006	26271006	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000182	exon16	c.A1626G	p.G542G	.	.	.
HADHB	3032	broad.mit.edu	36	2	26339768	26339768	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000183	exon4	c.G126A	p.T42T	.	.	.
C2orf39	92749	broad.mit.edu	36	2	26529883	26529883	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145038	exon14	c.G1881T	p.K627N	.	.	.
OTOF	9381	broad.mit.edu	36	2	26538466	26538466	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194323	exon25	c.C2979A	p.I993I	.	.	.
AGBL5	60509	broad.mit.edu	36	2	27129890	27129890	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001035507	exon3	c.G332A	p.R111H	.	.	.
C2orf53	339779	broad.mit.edu	36	2	27214055	27214056	+	Missense_Mutation	DNP	AC	CA	CA	novel		TCGA-AG-3892-01	TCGA-AG-3892-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178553	exon3	c.646_647TG	.	.	.	.
C2orf53	339779	broad.mit.edu	36	2	27214225	27214225	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178553	exon3	c.C477T	p.S159S	.	.	.
CLIP4	79745	broad.mit.edu	36	2	29236800	29236800	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024692	exon12	c.C1497A	p.G499G	.	.	.
MEMO1	51072	broad.mit.edu	36	2	31970601	31970601	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015955	exon6	c.A544C	p.N182H	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32303068	32303068	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021209	exon9	c.C3053T	p.A1018V	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32328514	32328514	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021209	exon4	c.A1923T	p.E641D	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32328660	32328660	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021209	exon4	c.G1777A	p.D593N	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32329212	32329212	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021209	exon4	c.G1225A	p.E409K	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32556003	32556003	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016252	exon35	c.G6916T	p.E2306X	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32586817	32586817	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016252	exon51	c.G9967A	p.V3323I	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32672616	32672616	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016252	exon67	c.C13486T	p.R4496W	.	.	.
CRIM1	51232	broad.mit.edu	36	2	36477291	36477291	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016441	exon2	c.G362A	p.G121D	.	.	.
STRN	6801	broad.mit.edu	36	2	36938590	36938590	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003162	exon14	c.T1750G	p.L584V	.	.	.
MAP4K3	8491	broad.mit.edu	36	2	39341404	39341404	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003618	exon29	c.C2155T	p.P719S	.	.	.
THADA	63892	broad.mit.edu	36	2	43657731	43657731	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083953	exon10	c.G971A	p.S324N	.	.	.
PLEKHH2	130271	broad.mit.edu	36	2	43780782	43780782	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172069	exon8	c.G1181T	p.R394I	.	.	.
DYNC2LI1	51626	broad.mit.edu	36	2	43876547	43876547	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193464	exon7	c.T525G	p.I175M	.	.	.
DYNC2LI1	51626	broad.mit.edu	36	2	43877418	43877418	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193464	exon8	c.T637C	p.Y213H	.	.	.
LRPPRC	10128	broad.mit.edu	36	2	44028392	44028392	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133259	exon19	c.G1947T	p.K649N	.	.	.
MCFD2	90411	broad.mit.edu	36	2	46986183	46986183	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171507	exon4	c.G364T	p.D122Y	.	.	.
MSH2	4436	broad.mit.edu	36	2	47510542	47510542	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000251	exon7	c.A1234C	p.N412H	.	.	.
MSH6	2956	broad.mit.edu	36	2	47887257	47887257	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000179	exon9	c.G3964T	p.E1322X	.	.	.
FBXO11	80204	broad.mit.edu	36	2	47889806	47889806	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190274	exon21	c.C2550A	p.F850L	.	.	.
FOXN2	3344	broad.mit.edu	36	2	48427271	48427271	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002158	exon3	c.T414G	p.I138M	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48661956	48661956	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198594	exon1	c.A680G	p.N227S	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48662678	48662678	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198594	exon1	c.G1402T	p.E468X	.	.	.
MTIF2	4528	broad.mit.edu	36	2	55324686	55324686	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005369	exon12	c.C1294A	p.L432I	.	.	.
CCDC88A	55704	broad.mit.edu	36	2	55425140	55425140	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135597	exon11	c.C1056T	p.D352D	.	.	.
XPO1	7514	broad.mit.edu	36	2	61572976	61572976	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003400	exon15	c.G1711A	p.E571K	.	.	.
AFTPH	54812	broad.mit.edu	36	2	64632851	64632851	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017657	exon2	c.G739T	p.E247X	.	.	.
MEIS1	4211	broad.mit.edu	36	2	66518379	66518379	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002398	exon2	c.G19A	p.D7N	.	.	.
ETAA1	54465	broad.mit.edu	36	2	67484949	67484949	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019002	exon5	c.C1631T	p.A544V	.	.	.
PLEK	5341	broad.mit.edu	36	2	68461462	68461462	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002664	exon3	c.A302C	p.K101T	.	.	.
PROKR1	10887	broad.mit.edu	36	2	68736002	68736002	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138964	exon2	c.C972A	p.F324L	.	.	.
C2orf42	54980	broad.mit.edu	36	2	70262608	70262608	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017880	exon3	c.C14A	p.S5Y	.	.	.
ZNF638	27332	broad.mit.edu	36	2	71446261	71446261	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014497	exon6	c.C1912T	p.R638C	.	.	.
EMX1	2016	broad.mit.edu	36	2	73014571	73014571	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004097	exon3	c.G853A	p.D285N	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73570671	73570671	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015120	exon10	c.G8074T	p.E2692X	.	.	.
RTKN	6242	broad.mit.edu	36	2	74510496	74510496	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001015056	exon6	c.G572A	p.S191N	.	.	.
DQX1	165545	broad.mit.edu	36	2	74600200	74600200	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133637	exon10	c.C1797A	p.Y599X	.	.	.
SEMA4F	10505	broad.mit.edu	36	2	74737225	74737225	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004263	exon2	c.C202A	p.L68I	.	.	.
FAM176A	84141	broad.mit.edu	36	2	75574082	75574082	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032181	exon4	c.G247A	p.D83N	.	.	.
CTNNA2	1496	broad.mit.edu	36	2	79938658	79938658	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004389	exon4	c.C310T	p.R104W	.	.	.
DNAH6	1768	broad.mit.edu	36	2	84658008	84658008	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001370	exon13	c.G2041T	p.E681X	.	.	.
IMMT	10989	broad.mit.edu	36	2	86260073	86260073	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100169	exon3	c.G303T	p.K101N	.	.	.
KIDINS220	57498	broad.mit.edu	36	2	8843404	8843404	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020738	exon17	c.A2147G	p.D716G	.	.	.
KIDINS220	57498	broad.mit.edu	36	2	8876327	8876327	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020738	exon3	c.A156G	p.E52E	.	.	.
MBOAT2	129642	broad.mit.edu	36	2	9016170	9016170	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138799	exon2	c.G128A	p.R43Q	.	.	.
ZNF514	84874	broad.mit.edu	36	2	95179202	95179202	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032788	exon5	c.G755T	p.R252I	.	.	.
ANKRD36B	57730	broad.mit.edu	36	2	97530485	97530485	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025190	exon22	c.G1525T	p.D509Y	.	.	.
TMEM131	23505	broad.mit.edu	36	2	97798198	97798198	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015348	exon13	c.G1188A	p.S396S	.	.	.
LIPT1	51601	broad.mit.edu	36	2	99145151	99145151	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145197	exon4	c.G299T	p.R100I	.	.	.
REV1	51455	broad.mit.edu	36	2	99432251	99432251	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016316	exon4	c.G329A	p.R110Q	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100871956	100871956	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001855	exon42	c.C4134T	p.I1378I	.	.	.
TGFBR1	7046	broad.mit.edu	36	9	100949850	100949850	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004612	exon8	c.T1349G	p.L450X	.	.	.
TMEFF1	8577	broad.mit.edu	36	9	102300956	102300956	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003692	exon2	c.G285T	p.L95F	.	.	.
SMC2	10592	broad.mit.edu	36	9	105904101	105904101	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006444	exon8	c.G676T	p.E226X	.	.	.
OR13F1	138805	broad.mit.edu	36	9	106307064	106307064	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004485	exon1	c.C700T	p.R234X	.	.	.
LPAR1	1902	broad.mit.edu	36	9	112743944	112743944	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001401	exon3	c.G371A	p.R124H	.	.	.
OR2K2	26248	broad.mit.edu	36	9	113129589	113129589	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_205859	exon1	c.C946A	p.L316I	.	.	.
DNAJC25	548645	broad.mit.edu	36	9	113449325	113449325	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001015882	exon2	c.A454C	p.I152L	.	.	.
C9orf84	158401	broad.mit.edu	36	9	113504318	113504318	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173521	exon21	c.G2785A	p.E929K	.	.	.
C9orf80	58493	broad.mit.edu	36	9	114491647	114491647	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021218	exon4	c.A200G	p.Q67R	.	.	.
ZNF883	169834	broad.mit.edu	36	9	114799794	114799794	+	Silent	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001101338	exon5	c.T567G	p.V189V	.	.	.
RGS3	5998	broad.mit.edu	36	9	115263948	115263948	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144488	exon3	c.G221A	p.R74Q	.	.	.
TNC	3371	broad.mit.edu	36	9	116859427	116859427	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002160	exon15	c.A4405G	p.T1469A	.	.	.
TNC	3371	broad.mit.edu	36	9	116880290	116880290	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002160	exon7	c.C2427A	p.I809I	.	.	.
DBC1	1620	broad.mit.edu	36	9	121051146	121051146	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014618	exon3	c.C322T	p.L108F	.	.	.
FBXW2	26190	broad.mit.edu	36	9	122589968	122589968	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012164	exon3	c.G390T	p.M130I	.	.	.
PTGS1	5742	broad.mit.edu	36	9	124188559	124188559	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000962	exon9	c.G1023T	p.K341N	.	.	.
OR1J2	26740	broad.mit.edu	36	9	124313701	124313701	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054107	exon1	c.C800A	p.S267Y	.	.	.
OR1L8	138881	broad.mit.edu	36	9	124370309	124370309	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004454	exon1	c.A269C	p.K90T	.	.	.
OR5C1	392391	broad.mit.edu	36	9	124591566	124591566	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001923	exon1	c.C534A	p.I178I	.	.	.
OR1K1	392392	broad.mit.edu	36	9	124602718	124602718	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080859	exon1	c.C496T	p.R166C	.	.	.
GPR21	2844	broad.mit.edu	36	9	124837313	124837313	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005294	exon1	c.G647A	p.R216H	.	.	.
PPP6C	5537	broad.mit.edu	36	9	126951967	126951967	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001123369	exon6	c.G658A	p.E220K	.	.	.
GAPVD1	26130	broad.mit.edu	36	9	127139463	127139463	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015635	exon16	c.A2730G	p.E910E	.	.	.
C9orf117	286207	broad.mit.edu	36	9	129514816	129514816	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012502	exon7	c.G1145A	p.R382H	.	.	.
DNM1	1759	broad.mit.edu	36	9	130024659	130024659	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005336	exon8	c.G1091A	p.R364Q	.	.	.
GOLGA2	2801	broad.mit.edu	36	9	130076046	130076046	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004486	exon2	c.C111T	p.S37S	.	.	.
ODF2	4957	broad.mit.edu	36	9	130302177	130302177	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153435	exon21	c.G2504A	p.R835H	.	.	.
PKN3	29941	broad.mit.edu	36	9	130522586	130522586	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013355	exon22	c.C2550T	p.G850G	.	.	.
NUP188	23511	broad.mit.edu	36	9	130807811	130807811	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015354	exon41	c.G4804A	p.E1602K	.	.	.
MPDZ	8777	broad.mit.edu	36	9	13115380	13115380	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003829	exon34	c.C4642A	p.L1548I	.	.	.
MPDZ	8777	broad.mit.edu	36	9	13237771	13237771	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003829	exon2	c.C46T	p.R16C	.	.	.
SETX	23064	broad.mit.edu	36	9	134211525	134211525	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015046	exon4	c.G332A	p.R111Q	.	.	.
TTF1	7270	broad.mit.edu	36	9	134241254	134241254	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007344	exon11	c.C2587T	p.R863X	.	.	.
C9orf96	169436	broad.mit.edu	36	9	135249247	135249247	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153710	exon8	c.C592T	p.R198C	.	.	.
OLFM1	10439	broad.mit.edu	36	9	137151291	137151291	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014279	exon6	c.G850A	p.G284R	.	.	.
GLT6D1	360203	broad.mit.edu	36	9	137655854	137655854	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182974	exon5	c.G741T	p.L247L	.	.	.
SNAPC4	6621	broad.mit.edu	36	9	138402858	138402858	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003086	exon10	c.C982T	p.R328C	.	.	.
CACNA1B	774	broad.mit.edu	36	9	140110840	140110840	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000718	exon36	c.G5178T	p.L1726F	.	.	.
FREM1	158326	broad.mit.edu	36	9	14832347	14832347	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144966	exon10	c.G1705A	p.E569K	.	.	.
FREM1	158326	broad.mit.edu	36	9	14847648	14847648	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144966	exon6	c.G731A	p.G244D	.	.	.
HAUS6	54801	broad.mit.edu	36	9	19048679	19048679	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017645	exon16	c.G2086T	p.D696Y	.	.	.
KIAA1797	54914	broad.mit.edu	36	9	20730295	20730295	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017794	exon7	c.A348C	p.E116D	.	.	.
IFNA10	3446	broad.mit.edu	36	9	21196947	21196947	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002171	exon1	c.C150A	p.F50L	.	.	.
KLHL9	55958	broad.mit.edu	36	9	21323625	21323625	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018847	exon1	c.G1234T	p.E412X	.	.	.
PLAA	9373	broad.mit.edu	36	9	26925019	26925019	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031689	exon2	c.A335C	p.K112T	.	.	.
TEK	7010	broad.mit.edu	36	9	27196730	27196730	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000459	exon15	c.C2515A	p.L839I	.	.	.
LINGO2	158038	broad.mit.edu	36	9	27940531	27940531	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152570	exon7	c.C139T	p.R47X	.	.	.
TOPORS	10210	broad.mit.edu	36	9	32532526	32532526	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195622	exon2	c.G1802A	p.S601N	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32621919	32621919	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153809	exon1	c.A3659C	p.K1220T	.	.	.
ARID3C	138715	broad.mit.edu	36	9	34617855	34617855	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017363	exon1	c.G157T	p.E53X	.	.	.
KIAA1045	23349	broad.mit.edu	36	9	34961297	34961297	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015297	exon2	c.T2A	p.M1K	.	.	.
C9orf131	138724	broad.mit.edu	36	9	35035410	35035410	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040411	exon2	c.C2565A	p.V855V	.	.	.
RUSC2	9853	broad.mit.edu	36	9	35545271	35545271	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014806	exon3	c.C2229T	p.V743V	.	.	.
CD72	971	broad.mit.edu	36	9	35600743	35600743	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001782	exon8	c.G958A	p.A320T	.	.	.
TLN1	7094	broad.mit.edu	36	9	35689390	35689390	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006289	exon51	c.C6837T	p.S2279S	.	.	.
RECK	8434	broad.mit.edu	36	9	36111662	36111662	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021111	exon20	c.G2671A	p.D891N	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37697475	37697475	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014907	exon3	c.G164A	p.R55Q	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37723737	37723737	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014907	exon12	c.C1133A	p.S378Y	.	.	.
DCAF10	79269	broad.mit.edu	36	9	37850057	37850057	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024345	exon6	c.G1178A	p.R393Q	.	.	.
ZNF658	26149	broad.mit.edu	36	9	40764221	40764221	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033160	exon5	c.T1054G	p.F352V	.	.	.
C9orf68	55064	broad.mit.edu	36	9	4607927	4607927	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039395	exon8	c.G817T	p.E273X	.	.	.
C9orf68	55064	broad.mit.edu	36	9	4608898	4608898	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039395	exon7	c.C599T	p.A200V	.	.	.
JAK2	3717	broad.mit.edu	36	9	5059037	5059037	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004972	exon11	c.G1342T	p.E448X	.	.	.
INSL6	11172	broad.mit.edu	36	9	5175387	5175387	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007179	exon1	c.C216T	p.V72V	.	.	.
RANBP6	26953	broad.mit.edu	36	9	6004495	6004495	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012416	exon1	c.C1113A	p.I371I	.	.	.
IL33	90865	broad.mit.edu	36	9	6246123	6246123	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199640	exon7	c.G642T	p.E214D	.	.	.
TPD52L3	89882	broad.mit.edu	36	9	6320998	6320998	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001874	exon2	c.G390A	p.T130T	.	.	.
PGM5	5239	broad.mit.edu	36	9	70196294	70196294	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021965	exon5	c.T722G	p.V241G	.	.	.
FAM189A2	9413	broad.mit.edu	36	9	71182418	71182418	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004816	exon6	c.G432A	p.P144P	.	.	.
TRPM3	80036	broad.mit.edu	36	9	72357970	72357970	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007471	exon22	c.C3264T	p.I1088I	.	.	.
TMEM2	23670	broad.mit.edu	36	9	73505460	73505460	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013390	exon19	c.G3295A	p.E1099K	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78651357	78651357	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015225	exon4	c.C402T	p.S134S	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79078057	79078057	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018037	exon24	c.G2469T	p.Q823H	.	.	.
FAM75D1	389763	broad.mit.edu	36	9	83799318	83799318	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001670	exon4	c.A4113C	p.Q1371H	.	.	.
RASEF	158158	broad.mit.edu	36	9	84795127	84795127	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152573	exon16	c.C2116T	p.R706X	.	.	.
KIF27	55582	broad.mit.edu	36	9	85696179	85696179	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017576	exon6	c.A1660C	p.K554Q	.	.	.
KIF27	55582	broad.mit.edu	36	9	85708154	85708154	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017576	exon4	c.C1099T	p.R367X	.	.	.
SLC28A3	64078	broad.mit.edu	36	9	86106999	86106999	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022127	exon6	c.C460T	p.R154X	.	.	.
NTRK2	4915	broad.mit.edu	36	9	86528999	86528999	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018066	exon8	c.A761G	p.N254S	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89451272	89451272	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004938	exon13	c.C1208T	p.S403L	.	.	.
NOL8	55035	broad.mit.edu	36	9	94109028	94109028	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017948	exon11	c.A2786C	p.N929T	.	.	.
OGN	4969	broad.mit.edu	36	9	94188352	94188352	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014057	exon6	c.A678C	p.E226D	.	.	.
C9orf102	375748	broad.mit.edu	36	9	97699984	97699984	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010895	exon3	c.A537C	p.K179N	.	.	.
ZNF782	158431	broad.mit.edu	36	9	98620297	98620297	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001662	exon6	c.G1829T	p.R610I	.	.	.
ZNF782	158431	broad.mit.edu	36	9	98621633	98621633	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001662	exon6	c.C493T	p.R165C	.	.	.
FAM22G	441457	broad.mit.edu	36	9	98740053	98740053	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001045477	exon6	c.C1389A	p.F463L	.	.	.
HEMGN	55363	broad.mit.edu	36	9	99732321	99732321	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_197978	exon3	c.G1177T	p.E393X	.	.	.
HEMGN	55363	broad.mit.edu	36	9	99732921	99732921	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_197978	exon3	c.G577A	p.D193N	.	.	.
NALCN	259232	broad.mit.edu	36	13	100828980	100828980	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052867	exon4	c.G317A	p.R106H	.	.	.
ERCC5	2073	broad.mit.edu	36	13	102308634	102308634	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000123	exon6	c.C537A	p.F179L	.	.	.
ARGLU1	55082	broad.mit.edu	36	13	105994475	105994475	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018011	exon4	c.G692T	p.R231I	.	.	.
CARKD	55739	broad.mit.edu	36	13	110088842	110088842	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018210	exon10	c.T1146G	p.G382G	.	.	.
TUBGCP3	10426	broad.mit.edu	36	13	112191949	112191949	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006322	exon21	c.G2512T	p.E838X	.	.	.
ATP11A	23250	broad.mit.edu	36	13	112584360	112584360	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032189	exon29	c.G3557A	p.R1186H	.	.	.
CDC16	8881	broad.mit.edu	36	13	114025817	114025817	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001078645	exon6	c.C501T	p.F167F	.	.	.
ZMYM2	7750	broad.mit.edu	36	13	19554206	19554206	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_197968	exon22	c.C3504T	p.Y1168Y	.	.	.
ZMYM2	7750	broad.mit.edu	36	13	19555133	19555133	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_197968	exon23	c.C3781T	p.R1261X	.	.	.
PARP4	143	broad.mit.edu	36	13	23970367	23970368	+	Splice_Site	DNP	CC	AA	AA	novel		TCGA-AG-3892-01	TCGA-AG-3892-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006437	exon6	c.478_478TT	.	.	.	.
ATP12A	479	broad.mit.edu	36	13	24178568	24178568	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185085	exon15	c.G2154T	p.Q718H	ATP12A,central_nervous_system,brain,Substitution - Missense,+2	.	.
RNF17	56163	broad.mit.edu	36	13	24265460	24265460	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184993	exon10	c.G1216T	p.E406X	.	.	.
RNF17	56163	broad.mit.edu	36	13	24314221	24314221	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184993	exon19	c.C2525A	p.S842Y	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25004445	25004445	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016529	exon5	c.G456T	p.K152N	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25300264	25300264	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016529	exon28	c.C2688T	p.F896F	.	.	.
GTF3A	2971	broad.mit.edu	36	13	26907314	26907314	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002097	exon8	c.G918T	p.K306N	.	.	.
KATNAL1	84056	broad.mit.edu	36	13	29682544	29682544	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032116	exon10	c.C1183T	p.R395C	.	.	.
FRY	10129	broad.mit.edu	36	13	31603849	31603849	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023037	exon8	c.G757T	p.E253X	.	.	.
FRY	10129	broad.mit.edu	36	13	31724038	31724038	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023037	exon50	c.A7194G	p.V2398V	.	.	.
BRCA2	675	broad.mit.edu	36	13	31804578	31804578	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000059	exon10	c.A963C	p.Q321H	.	.	.
BRCA2	675	broad.mit.edu	36	13	31870801	31870801	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000059	exon27	c.G10151A	p.R3384Q	.	.	.
N4BP2L1	90634	broad.mit.edu	36	13	31876388	31876388	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079691	exon4	c.G417T	p.K139N	.	.	.
N4BP2L2	10443	broad.mit.edu	36	13	31916029	31916029	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033111	exon7	c.C645T	p.V215V	.	.	.
N4BP2L2	10443	broad.mit.edu	36	13	32008502	32008502	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014887	exon2	c.G663T	p.K221N	.	.	.
NBEA	26960	broad.mit.edu	36	13	34645658	34645658	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015678	exon27	c.G4481A	p.G1494E	.	.	.
SPG20	23111	broad.mit.edu	36	13	35801630	35801630	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142295	exon4	c.G1033T	p.E345X	.	.	.
SMAD9	4093	broad.mit.edu	36	13	36351773	36351773	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005905	exon2	c.G54A	p.V18V	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37123390	37123390	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003306	exon8	c.G2091A	p.Q697Q	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37123470	37123470	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135957	exon8	c.A2011G	p.K671E	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37255363	37255363	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135957	exon2	c.C108T	p.Y36Y	.	.	.
FREM2	341640	broad.mit.edu	36	13	38160299	38160299	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207361	exon1	c.G818A	p.R273H	.	.	.
STOML3	161003	broad.mit.edu	36	13	38442392	38442392	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144033	exon6	c.G419T	p.R140I	.	.	.
MTRF1	9617	broad.mit.edu	36	13	40695460	40695460	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004294	exon9	c.C1156T	p.R386W	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41422079	41422079	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015058	exon2	c.G234A	p.Q78Q	.	.	.
DGKH	160851	broad.mit.edu	36	13	41632235	41632235	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178009	exon7	c.G818A	p.R273H	.	.	.
ZC3H13	23091	broad.mit.edu	36	13	45457498	45457498	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015070	exon10	c.G1655A	p.R552Q	.	.	.
LCP1	3936	broad.mit.edu	36	13	45606364	45606364	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002298	exon14	c.G1525T	p.E509X	.	.	.
LCP1	3936	broad.mit.edu	36	13	45619100	45619100	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002298	exon10	c.G1118T	p.R373I	.	.	.
C13orf18	80183	broad.mit.edu	36	13	45831740	45831740	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025113	exon9	c.G1147T	p.D383Y	.	.	.
CYSLTR2	57105	broad.mit.edu	36	13	48179795	48179795	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020377	exon1	c.G841T	p.D281Y	.	.	.
CDADC1	81602	broad.mit.edu	36	13	48752748	48752748	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030911	exon8	c.C1323A	p.I441I	.	.	.
CAB39L	81617	broad.mit.edu	36	13	48831955	48831955	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030925	exon4	c.G291A	p.V97V	.	.	.
NEK5	341676	broad.mit.edu	36	13	51591534	51591534	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199289	exon4	c.G136T	p.E46X	.	.	.
THSD1	55901	broad.mit.edu	36	13	51849828	51849828	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018676	exon5	c.C2278T	p.R760C	.	.	.
RNF219	79596	broad.mit.edu	36	13	78088226	78088226	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024546	exon6	c.C1671T	p.N557N	.	.	.
RNF219	79596	broad.mit.edu	36	13	78089194	78089194	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024546	exon6	c.C703T	p.R235C	.	.	.
DCT	1638	broad.mit.edu	36	13	93916827	93916827	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001922	exon3	c.G682A	p.E228K	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95044325	95044325	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014934	exon15	c.G1497A	p.Q499Q	.	.	.
TM9SF2	9375	broad.mit.edu	36	13	98970323	98970323	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004800	exon3	c.G272A	p.R91H	.	.	.
CLYBL	171425	broad.mit.edu	36	13	99313341	99313341	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206808	exon4	c.T534G	p.N178K	.	.	.
HPSE2	60495	broad.mit.edu	36	10	100232516	100232516	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166246	exon11	c.C1480T	p.R494C	.	.	.
ABCC2	1244	broad.mit.edu	36	10	101581527	101581527	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000392	exon22	c.C3053A	p.S1018Y	.	.	.
PPRC1	23082	broad.mit.edu	36	10	103889305	103889305	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015062	exon5	c.G1050A	p.G350G	.	.	.
C10orf79	80217	broad.mit.edu	36	10	105893280	105893280	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025145	exon32	c.C4052A	p.A1351D	.	.	.
C10orf79	80217	broad.mit.edu	36	10	105910825	105910825	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025145	exon27	c.A3500G	p.K1167R	.	.	.
CCDC147	159686	broad.mit.edu	36	10	106108298	106108298	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008723	exon2	c.G219T	p.V73V	.	.	.
SORCS3	22986	broad.mit.edu	36	10	106897512	106897512	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014978	exon9	c.C1450A	p.L484I	.	.	.
SMC3	9126	broad.mit.edu	36	10	112333962	112333962	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005445	exon13	c.C1123A	p.L375I	.	.	.
NRAP	4892	broad.mit.edu	36	10	115396686	115396686	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198060	exon10	c.G979A	p.E327K	.	.	.
DCLRE1A	9937	broad.mit.edu	36	10	115599278	115599278	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014881	exon2	c.T1576G	p.L526V	.	.	.
GFRA1	2674	broad.mit.edu	36	10	117813993	117813993	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145453	exon10	c.C1289A	p.S430X	.	.	.
PNLIPRP3	119548	broad.mit.edu	36	10	118215636	118215636	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011709	exon8	c.C893A	p.A298D	.	.	.
UPF2	26019	broad.mit.edu	36	10	12117258	12117258	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080599	exon2	c.G171T	p.K57N	.	.	.
TIAL1	7073	broad.mit.edu	36	10	121331973	121331973	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033925	exon3	c.A267C	p.K89N	.	.	.
WDR11	55717	broad.mit.edu	36	10	122639465	122639465	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018117	exon18	c.T2297G	p.L766X	.	.	.
FGFR2	2263	broad.mit.edu	36	10	123300810	123300810	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144916	exon2	c.G263A	p.R88H	FGFR2,breast,NS,Substitution - Missense,-1	.	.
ATE1	11101	broad.mit.edu	36	10	123660614	123660614	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001976	exon5	c.A380C	p.D127A	.	.	.
CUZD1	50624	broad.mit.edu	36	10	124588695	124588695	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022034	exon3	c.C276A	p.V92V	.	.	.
CPXM2	119587	broad.mit.edu	36	10	125547542	125547542	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198148	exon6	c.T829C	p.S277P	.	.	.
FAM175B	23172	broad.mit.edu	36	10	126509940	126509940	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032182	exon8	c.A696G	p.R232R	.	.	.
FANK1	92565	broad.mit.edu	36	10	127658854	127658854	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145235	exon2	c.G148T	p.E50X	.	.	.
DOCK1	1793	broad.mit.edu	36	10	128936270	128936270	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001380	exon28	c.C2793T	p.F931F	.	.	.
PHYH	5264	broad.mit.edu	36	10	13376527	13376527	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037537	exon3	c.G21A	p.S7S	.	.	.
PRPF18	8559	broad.mit.edu	36	10	13696064	13696064	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003675	exon8	c.A764C	p.K255T	.	.	.
DCLRE1C	64421	broad.mit.edu	36	10	15036012	15036012	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033855	exon1	c.A4C	p.S2R	.	.	.
ITGA8	8516	broad.mit.edu	36	10	15766046	15766046	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003638	exon4	c.C531A	p.N177K	.	.	.
VIM	7431	broad.mit.edu	36	10	17317198	17317198	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003380	exon7	c.C1033T	p.R345C	.	.	.
DNAJC1	64215	broad.mit.edu	36	10	22257467	22257467	+	Silent	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022365	exon3	c.T345G	p.V115V	.	.	.
GPR158	57512	broad.mit.edu	36	10	25741222	25741222	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020752	exon4	c.A1149T	p.K383N	.	.	.
WAC	51322	broad.mit.edu	36	10	28924888	28924888	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016628	exon7	c.G831T	p.K277N	.	.	.
CCDC7	221016	broad.mit.edu	36	10	32780801	32780801	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145023	exon2	c.G225T	p.K75N	.	.	.
ZNF248	57209	broad.mit.edu	36	10	38161591	38161591	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021045	exon6	c.A698C	p.K233T	.	.	.
ZNF33A	7581	broad.mit.edu	36	10	38383568	38383568	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006954	exon5	c.T510G	p.F170L	.	.	.
ZNF33A	7581	broad.mit.edu	36	10	38384095	38384095	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006954	exon5	c.G1037A	p.R346Q	.	.	.
ZNF33B	7582	broad.mit.edu	36	10	42408938	42408938	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006955	exon5	c.G1466T	p.R489I	.	.	.
BMS1	9790	broad.mit.edu	36	10	42608435	42608435	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014753	exon8	c.A926G	p.D309G	.	.	.
HNRNPF	3185	broad.mit.edu	36	10	43203002	43203002	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098208	exon3	c.G337A	p.V113M	.	.	.
DIP2C	22982	broad.mit.edu	36	10	451734	451734	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014974	exon7	c.C834T	p.V278V	.	.	.
GDF2	2658	broad.mit.edu	36	10	48034028	48034028	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016204	exon2	c.C846T	p.S282S	.	.	.
MAPK8	5599	broad.mit.edu	36	10	49288110	49288110	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002750	exon4	c.C343A	p.L115I	.	.	.
AKR1C2	1646	broad.mit.edu	36	10	5033729	5033729	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_205845	exon3	c.G229T	p.E77X	.	.	.
CHAT	1103	broad.mit.edu	36	10	50529984	50529984	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142929	exon11	c.G1206A	p.G402G	.	.	.
AKR1C3	8644	broad.mit.edu	36	10	5139674	5139674	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003739	exon9	c.T951C	p.Y317Y	.	.	.
AKR1C4	1109	broad.mit.edu	36	10	5250709	5250709	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001818	exon9	c.T958G	p.S320A	.	.	.
PRKG1	5592	broad.mit.edu	36	10	53234445	53234445	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006258	exon4	c.A687C	p.E229D	.	.	.
DKK1	22943	broad.mit.edu	36	10	53746404	53746404	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012242	exon4	c.A632C	p.K211T	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55252858	55252858	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142767	exon31	c.G4514T	p.R1505I	.	.	.
ANK3	288	broad.mit.edu	36	10	61504049	61504049	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020987	exon37	c.C6596A	p.T2199N	.	.	.
ARID5B	84159	broad.mit.edu	36	10	63487050	63487050	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032199	exon6	c.A1015G	p.I339V	.	.	.
TET1	80312	broad.mit.edu	36	10	70003940	70003940	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030625	exon2	c.G1839T	p.K613N	.	.	.
TET1	80312	broad.mit.edu	36	10	70121200	70121200	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030625	exon12	c.G6034A	p.A2012T	.	.	.
KIAA1274	27143	broad.mit.edu	36	10	71964546	71964546	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014431	exon10	c.G1168T	p.E390X	.	.	.
CDH23	64072	broad.mit.edu	36	10	72996606	72996606	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052836	exon7	c.C531A	p.F177L	.	.	.
CDH23	64072	broad.mit.edu	36	10	73131958	73131958	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022124	exon22	c.C2571T	p.V857V	.	.	.
CDH23	64072	broad.mit.edu	36	10	73230504	73230504	+	Missense_Mutation	SNP	G	A	A	rs41281336	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171933	exon6	c.G748A	p.E250K	.	.	.
OIT3	170392	broad.mit.edu	36	10	74354276	74354276	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152635	exon7	c.T1235G	p.L412R	.	.	.
P4HA1	5033	broad.mit.edu	36	10	74501904	74501904	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142595	exon5	c.A214C	p.K72Q	.	.	.
NUDT13	25961	broad.mit.edu	36	10	74551989	74551989	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015901	exon4	c.G274A	p.D92N	.	.	.
ECD	11319	broad.mit.edu	36	10	74567833	74567833	+	Nonsense_Mutation	SNP	C	A	A	rs34313575	unknown	TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135753	exon11	c.G1294T	p.E432X	.	.	.
MYOZ1	58529	broad.mit.edu	36	10	75067523	75067523	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021245	exon3	c.C237A	p.F79L	.	.	.
MYST4	23522	broad.mit.edu	36	10	76458348	76458348	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012330	exon18	c.C3760T	p.R1254C	.	.	.
ITIH2	3698	broad.mit.edu	36	10	7826825	7826825	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002216	exon19	c.C2474A	p.S825Y	.	.	.
KCNMA1	3778	broad.mit.edu	36	10	78455216	78455216	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014797	exon17	c.G1934A	p.R645Q	.	.	.
ANXA11	311	broad.mit.edu	36	10	81913315	81913315	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145869	exon11	c.C984T	p.S328S	.	.	.
PTEN	5728	broad.mit.edu	36	10	89614225	89614225	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000314	exon1	c.G19T	p.E7X	PTEN,central_nervous_system,brain,Substitution - Nonsense,0	.	.
LIPF	8513	broad.mit.edu	36	10	90417373	90417373	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004190	exon3	c.T173G	p.I58S	.	.	.
LIPF	8513	broad.mit.edu	36	10	90428376	90428376	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004190	exon10	c.T1155G	p.V385V	.	.	.
FAS	355	broad.mit.edu	36	10	90757552	90757552	+	Silent	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000043	exon3	c.T312C	p.C104C	.	.	.
FAS	355	broad.mit.edu	36	10	90764104	90764104	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000043	exon9	c.A925C	p.K309Q	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91487499	91487499	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016195	exon20	c.G2801A	p.S934N	.	.	.
ANKRD1	27063	broad.mit.edu	36	10	92667483	92667483	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014391	exon5	c.G538A	p.E180K	.	.	.
HECTD2	143279	broad.mit.edu	36	10	93247904	93247904	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182765	exon16	c.C1740A	p.F580L	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93744313	93744313	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003972	exon23	c.G3241T	p.E1081X	.	.	.
IDE	3416	broad.mit.edu	36	10	94204234	94204234	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004969	exon25	c.C3007A	p.P1003T	.	.	.
KIF11	3832	broad.mit.edu	36	10	94397976	94397976	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004523	exon19	c.A2575C	p.S859R	.	.	.
HHEX	3087	broad.mit.edu	36	10	94444486	94444486	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002729	exon4	c.G794T	p.S265I	.	.	.
NOC3L	64318	broad.mit.edu	36	10	96089645	96089645	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022451	exon17	c.G1803T	p.E601D	.	.	.
CYP2C18	1562	broad.mit.edu	36	10	96456594	96456594	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000772	exon5	c.A706C	p.N236H	.	.	.
BLNK	29760	broad.mit.edu	36	10	97941757	97941757	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013314	exon17	c.G1333T	p.D445Y	.	.	.
DNTT	1791	broad.mit.edu	36	10	98074054	98074054	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004088	exon6	c.G792T	p.E264D	.	.	.
C10orf12	26148	broad.mit.edu	36	10	98733991	98733991	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015652	exon1	c.C2854T	p.R952X	.	.	.
ARHGAP19	84986	broad.mit.edu	36	10	99015828	99015828	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032900	exon2	c.G101T	p.R34L	.	.	.
ST8SIA4	7903	broad.mit.edu	36	5	100259333	100259333	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175052	exon2	c.C169T	p.R57X	.	.	.
SLCO6A1	133482	broad.mit.edu	36	5	101862130	101862130	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173488	exon1	c.C318T	p.R106R	.	.	.
MAN2A1	4124	broad.mit.edu	36	5	109228696	109228696	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002372	exon21	c.C3232T	p.R1078W	.	.	.
EPB41L4A	64097	broad.mit.edu	36	5	111532657	111532657	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022140	exon21	c.G1784A	p.R595Q	.	.	.
EPB41L4A	64097	broad.mit.edu	36	5	111604401	111604401	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022140	exon10	c.C801T	p.N267N	.	.	.
EPB41L4A	64097	broad.mit.edu	36	5	111782603	111782603	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022140	exon1	c.T33G	p.F11L	.	.	.
APC	324	broad.mit.edu	36	5	112202530	112202530	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C3286T	p.R1096X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.
APC	324	broad.mit.edu	36	5	112202673	112202673	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.T3429G	p.N1143K	.	.	.
DCP2	167227	broad.mit.edu	36	5	112364689	112364689	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152624	exon5	c.G442T	p.E148X	.	.	.
MCC	4163	broad.mit.edu	36	5	112427754	112427754	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085377	exon14	c.C2039T	p.S680L	.	.	.
CCDC112	153733	broad.mit.edu	36	5	114639648	114639648	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040440	exon5	c.G469T	p.E157X	.	.	.
CDO1	1036	broad.mit.edu	36	5	115174788	115174788	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001801	exon3	c.C372A	p.V124V	.	.	.
DMXL1	1657	broad.mit.edu	36	5	118461642	118461642	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005509	exon2	c.G157A	p.A53T	.	.	.
DMXL1	1657	broad.mit.edu	36	5	118534591	118534591	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005509	exon24	c.C6206T	p.A2069V	.	.	.
SRFBP1	153443	broad.mit.edu	36	5	121384223	121384223	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152546	exon6	c.T894G	p.S298R	.	.	.
MEGF10	84466	broad.mit.edu	36	5	126704205	126704205	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032446	exon5	c.C303T	p.S101S	.	.	.
CTXN3	613212	broad.mit.edu	36	5	127021341	127021341	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001048252	exon3	c.G229A	p.D77N	.	.	.
SLC27A6	28965	broad.mit.edu	36	5	128353954	128353954	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017372	exon4	c.G867T	p.K289N	.	.	.
SLC27A6	28965	broad.mit.edu	36	5	128379480	128379480	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017372	exon5	c.G973A	p.E325K	.	.	.
ADAMTS19	171019	broad.mit.edu	36	5	128985898	128985898	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133638	exon10	c.G1710A	p.Q570Q	.	.	.
IL5	3567	broad.mit.edu	36	5	131905711	131905711	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000879	exon3	c.C201T	p.I67I	.	.	.
RAD50	10111	broad.mit.edu	36	5	131939484	131939484	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005732	exon3	c.A330C	p.E110D	.	.	.
RAD50	10111	broad.mit.edu	36	5	131951269	131951269	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005732	exon6	c.G873T	p.E291D	.	.	.
GDF9	2661	broad.mit.edu	36	5	132225506	132225506	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005260	exon2	c.C1039A	p.L347I	.	.	.
HSPA4	3308	broad.mit.edu	36	5	132452009	132452009	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002154	exon9	c.G1000A	p.D334N	.	.	.
FSTL4	23105	broad.mit.edu	36	5	132676266	132676266	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015082	exon6	c.C706A	p.R236S	.	.	.
PKD2L2	27039	broad.mit.edu	36	5	137285237	137285237	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014386	exon9	c.C1342T	p.R448X	.	.	.
FAM13B	51306	broad.mit.edu	36	5	137309884	137309884	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016603	exon18	c.C2110A	p.H704N	.	.	.
BRD8	10902	broad.mit.edu	36	5	137516168	137516168	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139199	exon21	c.G2758T	p.E920X	.	.	.
ETF1	2107	broad.mit.edu	36	5	137875085	137875085	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004730	exon7	c.C840A	p.F280L	.	.	.
ETF1	2107	broad.mit.edu	36	5	137876377	137876377	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004730	exon6	c.T707G	p.L236R	.	.	.
LRRTM2	26045	broad.mit.edu	36	5	138238019	138238019	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015564	exon2	c.C130T	p.L44F	.	.	.
DNAJC18	202052	broad.mit.edu	36	5	138788642	138788642	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152686	exon5	c.G620A	p.R207Q	.	.	.
NRG2	9542	broad.mit.edu	36	5	139225379	139225379	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013982	exon5	c.C1128A	p.F376L	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13938136	13938136	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001369	exon19	c.G2945A	p.R982H	.	.	.
ANKHD1-EIF4EBP3	404734	broad.mit.edu	36	5	139818968	139818968	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017747	exon9	c.G1516T	p.E506X	.	.	.
ANKHD1-EIF4EBP3	404734	broad.mit.edu	36	5	139846748	139846748	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017747	exon14	c.A2164G	p.T722A	.	.	.
PCDHA2	56146	broad.mit.edu	36	5	140156417	140156417	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018905	exon1	c.G1684A	p.A562T	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140163441	140163441	+	Read-through	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031497	exon1	c.A2475C	p.X825Y	.	.	.
PCDHA12	56137	broad.mit.edu	36	5	140236052	140236052	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031864	exon1	c.G811A	p.E271K	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140461491	140461491	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018937	exon1	c.G1074T	p.E358D	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140462047	140462047	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018937	exon1	c.G1630A	p.E544K	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140462660	140462660	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018937	exon1	c.G2243A	p.S748N	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140534050	140534050	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018940	exon1	c.G1450A	p.A484T	.	.	.
PCDHB8	56128	broad.mit.edu	36	5	140538502	140538502	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019120	exon1	c.G703A	p.D235N	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140700168	140700168	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032009	exon1	c.C1446T	p.N482N	.	.	.
FCHSD1	89848	broad.mit.edu	36	5	141004401	141004401	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033449	exon16	c.G1565A	p.R522Q	.	.	.
NDFIP1	80762	broad.mit.edu	36	5	141495488	141495488	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030571	exon4	c.T292G	p.F98V	.	.	.
TCERG1	10915	broad.mit.edu	36	5	145818786	145818786	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040006	exon4	c.G585A	p.A195A	.	.	.
PPP2R2B	5521	broad.mit.edu	36	5	145960204	145960204	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127381	exon8	c.C803T	p.P268L	.	.	.
SPINK5	11005	broad.mit.edu	36	5	147474136	147474136	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127699	exon21	c.C1906T	p.R636W	.	.	.
SPINK5	11005	broad.mit.edu	36	5	147483661	147483661	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127699	exon27	c.C2611T	p.R871X	.	.	.
FBXO38	81545	broad.mit.edu	36	5	147770436	147770436	+	Silent	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_205836	exon9	c.C1008A	p.V336V	.	.	.
PDE6A	5145	broad.mit.edu	36	5	149304220	149304220	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000440	exon1	c.G210T	p.E70D	.	.	.
SLC26A2	1836	broad.mit.edu	36	5	149340307	149340307	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000112	exon3	c.G958T	p.E320X	.	.	.
SLC26A2	1836	broad.mit.edu	36	5	149341205	149341205	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000112	exon3	c.G1856T	p.R619I	.	.	.
ZNF300	91975	broad.mit.edu	36	5	150255372	150255372	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172831	exon7	c.G1670A	p.R557Q	.	.	.
NMUR2	56923	broad.mit.edu	36	5	151751982	151751982	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020167	exon4	c.G1211T	p.R404I	.	.	.
LARP1	23367	broad.mit.edu	36	5	154173825	154173825	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015315	exon19	c.G3036A	p.S1012S	.	.	.
HAVCR2	84868	broad.mit.edu	36	5	156466349	156466349	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032782	exon2	c.T261G	p.D87E	.	.	.
EBF1	1879	broad.mit.edu	36	5	158072709	158072709	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024007	exon13	c.G1216A	p.D406N	.	.	.
SLU7	10569	broad.mit.edu	36	5	159767609	159767609	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006425	exon9	c.A864C	p.K288N	.	.	.
SLU7	10569	broad.mit.edu	36	5	159768242	159768242	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006425	exon7	c.C680A	p.S227Y	.	.	.
ATP10B	23120	broad.mit.edu	36	5	160045676	160045676	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025153	exon6	c.G458A	p.R153Q	.	.	.
HMMR	3161	broad.mit.edu	36	5	162829339	162829339	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012485	exon4	c.C340A	p.L114I	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167558652	167558652	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122679	exon16	c.C3090A	p.F1030L	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169055420	169055420	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004946	exon10	c.T879G	p.I293M	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169437365	169437365	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004946	exon48	c.C4940A	p.S1647Y	.	.	.
FOXI1	2299	broad.mit.edu	36	5	169465811	169465811	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144769	exon1	c.T272G	p.V91G	.	.	.
FOXI1	2299	broad.mit.edu	36	5	169467677	169467677	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012188	exon2	c.C621T	p.F207F	.	.	.
C5orf58	133874	broad.mit.edu	36	5	169593735	169593735	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102609	exon2	c.A18C	p.E6D	.	.	.
LCP2	3937	broad.mit.edu	36	5	169622430	169622430	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005565	exon12	c.C812T	p.A271V	.	.	.
GABRP	2568	broad.mit.edu	36	5	170171559	170171559	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014211	exon10	c.G1042T	p.E348X	.	.	.
FBXW11	23291	broad.mit.edu	36	5	171236011	171236011	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033645	exon7	c.G939A	p.M313I	.	.	.
STK10	6793	broad.mit.edu	36	5	171466273	171466273	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005990	exon6	c.G744T	p.K248N	.	.	.
NSD1	64324	broad.mit.edu	36	5	176495432	176495432	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022455	exon2	c.G722T	p.R241I	.	.	.
ZNF354B	117608	broad.mit.edu	36	5	178242446	178242446	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058230	exon5	c.G387T	p.E129D	.	.	.
ZFP2	80108	broad.mit.edu	36	5	178291369	178291369	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030613	exon5	c.G449T	p.R150I	.	.	.
MAML1	9794	broad.mit.edu	36	5	179133548	179133548	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014757	exon5	c.C2115A	p.N705K	.	.	.
MAPK9	5601	broad.mit.edu	36	5	179595990	179595990	+	Read-through	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139070	exon12	c.A1275C	p.X425C	.	.	.
PLEKHG4B	153478	broad.mit.edu	36	5	208502	208502	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052909	exon7	c.T1084G	p.F362V	.	.	.
CDH12	1010	broad.mit.edu	36	5	21796453	21796453	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004061	exon13	c.A1604C	p.K535T	.	.	.
PLEKHG4B	153478	broad.mit.edu	36	5	226017	226017	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052909	exon15	c.T2988G	p.N996K	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23559174	23559174	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020227	exon9	c.C900A	p.N300K	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23560260	23560260	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020227	exon10	c.G1011A	p.R337R	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23562341	23562341	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020227	exon11	c.T1387G	p.L463V	.	.	.
CDH9	1007	broad.mit.edu	36	5	26926417	26926417	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016279	exon8	c.C1267T	p.R423W	.	.	.
CDH9	1007	broad.mit.edu	36	5	26951562	26951562	+	Silent	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016279	exon3	c.C456A	p.I152I	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31522385	31522385	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013235	exon13	c.G1884A	p.T628T	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32126990	32126990	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178140	exon19	c.C7679T	p.T2560M	.	.	.
MTMR12	54545	broad.mit.edu	36	5	32269671	32269671	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040446	exon15	c.C1639A	p.L547M	.	.	.
ZFR	51663	broad.mit.edu	36	5	32431164	32431164	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016107	exon11	c.A1837C	p.K613Q	.	.	.
TARS	6897	broad.mit.edu	36	5	33493237	33493237	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152295	exon9	c.A956C	p.K319T	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33585211	33585211	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030955	exon21	c.G4160A	p.R1387H	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33612989	33612989	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030955	exon19	c.C2899T	p.R967C	.	.	.
SPEF2	79925	broad.mit.edu	36	5	35795527	35795527	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024867	exon25	c.G3569A	p.R1190Q	.	.	.
SKP2	6502	broad.mit.edu	36	5	36204202	36204202	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032637	exon5	c.G567A	p.S189S	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37020919	37020919	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015384	exon10	c.A1880C	p.E627A	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37219045	37219045	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023073	exon26	c.G4995A	p.S1665S	.	.	.
LIFR	3977	broad.mit.edu	36	5	38518021	38518021	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127671	exon20	c.G2727A	p.E909E	.	.	.
FYB	2533	broad.mit.edu	36	5	39170811	39170811	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199335	exon8	c.G1578T	p.K526N	.	.	.
C9	735	broad.mit.edu	36	5	39347231	39347231	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001737	exon7	c.A876C	p.K292N	.	.	.
C7	730	broad.mit.edu	36	5	40972328	40972328	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000587	exon5	c.G412T	p.E138X	.	.	.
C6	729	broad.mit.edu	36	5	41212341	41212341	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000065	exon8	c.G1161T	p.K387N	.	.	.
HCN1	348980	broad.mit.edu	36	5	45339525	45339525	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021072	exon6	c.C1551T	p.H517H	.	.	.
IL6ST	3572	broad.mit.edu	36	5	55272763	55272763	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190981	exon16	c.A2478C	p.R826S	.	.	.
ANKRD55	79722	broad.mit.edu	36	5	55443086	55443086	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024669	exon10	c.T1246C	p.Y416H	.	.	.
HTR1A	3350	broad.mit.edu	36	5	63292310	63292310	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000524	exon1	c.G993A	p.A331A	.	.	.
HTR1A	3350	broad.mit.edu	36	5	63292663	63292663	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000524	exon1	c.C640A	p.L214I	.	.	.
SREK1IP1	285672	broad.mit.edu	36	5	64072689	64072689	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173829	exon3	c.C156T	p.S52S	.	.	.
ERBB2IP	55914	broad.mit.edu	36	5	65382388	65382388	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018695	exon20	c.C1925A	p.S642Y	.	.	.
PIK3R1	5295	broad.mit.edu	36	5	67624707	67624707	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181523	exon8	c.C1042T	p.R348X	.	.	.
PIK3R1	5295	broad.mit.edu	36	5	67624924	67624924	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181523	exon9	c.C1156T	p.R386X	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71526319	71526319	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005909	exon5	c.C1381A	p.L461I	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71527158	71527158	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005909	exon5	c.G2220T	p.K740N	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71528498	71528498	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005909	exon5	c.C3560A	p.S1187Y	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71529046	71529046	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005909	exon5	c.G4108T	p.D1370Y	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71529892	71529892	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005909	exon5	c.G4954T	p.E1652X	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71530059	71530059	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005909	exon5	c.G5121T	p.E1707D	.	.	.
ZNF366	167465	broad.mit.edu	36	5	71792414	71792414	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152625	exon2	c.C666T	p.S222S	.	.	.
FAM169A	26049	broad.mit.edu	36	5	74173207	74173207	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015566	exon2	c.A51C	p.E17D	.	.	.
POLK	51426	broad.mit.edu	36	5	74928253	74928253	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016218	exon13	c.C1979T	p.S660L	.	.	.
F2RL2	2151	broad.mit.edu	36	5	75950148	75950148	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004101	exon2	c.C140A	p.S47Y	.	.	.
AP3B1	8546	broad.mit.edu	36	5	77370698	77370698	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003664	exon23	c.C2734T	p.R912X	.	.	.
DMGDH	29958	broad.mit.edu	36	5	78358115	78358115	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013391	exon13	c.C2078T	p.A693V	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79063228	79063228	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153610	exon2	c.A2884C	p.T962P	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79064581	79064581	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153610	exon2	c.C4237A	p.L1413I	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79065586	79065586	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153610	exon2	c.T5242G	p.L1748V	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79066818	79066818	+	Silent	SNP	A	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153610	exon2	c.A6474G	p.Q2158Q	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79066972	79066972	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153610	exon2	c.G6628A	p.V2210I	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79070055	79070055	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153610	exon2	c.T9711G	p.Y3237X	.	.	.
FASTKD3	79072	broad.mit.edu	36	5	7919830	7919830	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024091	exon2	c.C1367A	p.S456X	.	.	.
MTRR	4552	broad.mit.edu	36	5	7931150	7931150	+	Silent	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002454	exon5	c.C495T	p.G165G	.	.	.
SPZ1	84654	broad.mit.edu	36	5	79652415	79652415	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032567	exon1	c.G625T	p.D209Y	.	.	.
DHFR	1719	broad.mit.edu	36	5	79980980	79980980	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000791	exon3	c.C226A	p.L76I	.	.	.
RASGRF2	5924	broad.mit.edu	36	5	80445193	80445193	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006909	exon15	c.G2168A	p.R723H	.	.	.
RASGRF2	5924	broad.mit.edu	36	5	80551310	80551310	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006909	exon26	c.G3578A	p.R1193H	.	.	.
ZCCHC9	84240	broad.mit.edu	36	5	80636521	80636521	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001131036	exon2	c.G189T	p.K63N	.	.	.
VCAN	1462	broad.mit.edu	36	5	82851975	82851975	+	Silent	SNP	T	G	G	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164098	exon7	c.T2094G	p.T698T	.	.	.
VCAN	1462	broad.mit.edu	36	5	82852694	82852694	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164098	exon7	c.C2813A	p.S938Y	.	.	.
VCAN	1462	broad.mit.edu	36	5	82853010	82853010	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164098	exon7	c.G3129A	p.E1043E	.	.	.
VCAN	1462	broad.mit.edu	36	5	82872321	82872321	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164097	exon7	c.T4782A	p.D1594E	.	.	.
MEF2C	4208	broad.mit.edu	36	5	88054275	88054275	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193350	exon11	c.G1324A	p.E442K	MEF2C,lung,NS,Substitution - Missense,0	.	.
GPR98	84059	broad.mit.edu	36	5	89974544	89974544	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032119	exon13	c.T2483C	p.V828A	.	.	.
GPR98	84059	broad.mit.edu	36	5	90122806	90122806	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032119	exon70	c.C14404T	p.R4802X	.	.	.
GPR98	84059	broad.mit.edu	36	5	90172178	90172178	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032119	exon78	c.C16639T	p.R5547C	MASS1,central_nervous_system,brain,Substitution - Missense,-1	.	.
C5orf36	285600	broad.mit.edu	36	5	93881766	93881766	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145678	exon5	c.C913T	p.R305C	.	.	.
MCTP1	79772	broad.mit.edu	36	5	94229836	94229836	+	Silent	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002796	exon17	c.C1731T	p.C577C	.	.	.
ELL2	22936	broad.mit.edu	36	5	95262465	95262465	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012081	exon6	c.C817T	p.P273S	.	.	.
TAS2R1	50834	broad.mit.edu	36	5	9682596	9682596	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019599	exon1	c.C549A	p.F183L	.	.	.
RNF170	81790	broad.mit.edu	36	8	42862172	42862172	+	Splice_Site	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
OSTCL	202459	broad.mit.edu	36	6	159182825	159182825	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
CAPS2	84698	broad.mit.edu	36	12	73959016	73959016	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
