Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ADAM18	8749	broad.mit.edu	36	8	39625039	39625040	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014237	exon12	c.1066_1067insT	p.I356fs	.	.	.
RP1	6101	broad.mit.edu	36	8	55700864	55700865	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006269	exon4	c.1869_1870insA	p.D623fs	.	.	.
CNGB3	54714	broad.mit.edu	36	8	87657393	87657394	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019098	exon18	c.2185_2186insA	p.E729fs	.	.	.
C19orf44	84167	broad.mit.edu	36	19	16472755	16472756	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032207	exon2	c.152_153insA	p.L51fs	.	.	.
C1orf85	112770	broad.mit.edu	36	1	154532024	154532025	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144580	exon1	c.37_38insG	p.H13fs	.	.	.
C1orf114	57821	broad.mit.edu	36	1	167631039	167631040	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021179	exon6	c.1397_1398insA	p.M466fs	.	.	.
WDR64	128025	broad.mit.edu	36	1	240031077	240031078	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144625	exon27	c.3183_3184insA	p.L1061fs	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33821832	33821833	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052896	exon48	c.7243_7244insT	p.D2415_G2416delinsX	.	.	.
SOBP	55084	broad.mit.edu	36	6	108062391	108062392	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018013	exon6	c.1650_1651insC	p.K550fs	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152758391	152758392	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182961	exon51	c.7665_7666insA	p.N2555fs	.	.	.
DLAT	1737	broad.mit.edu	36	11	111402186	111402187	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001931	exon2	c.334_335insA	p.E112fs	.	.	.
RHOT1	55288	broad.mit.edu	36	17	27553912	27553913	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033566	exon15	c.1212_1213insA	p.D404fs	.	.	.
MRPL45	84311	broad.mit.edu	36	17	33707978	33707979	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032351	exon2	c.111_112insA	p.T37fs	.	.	.
PVRL3	25945	broad.mit.edu	36	3	112335254	112335255	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015480	exon6	c.1152_1153insA	p.P384fs	.	.	.
MFSD1	64747	broad.mit.edu	36	3	160004808	160004809	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022736	exon2	c.317_318insT	p.Y106fs	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	84071645	84071646	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079910	exon22	c.4615_4616insA	p.E1539fs	.	.	.
UFSP2	55325	broad.mit.edu	36	4	186561642	186561643	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018359	exon11	c.1323_1324insA	p.K441fs	.	.	.
CCDC110	256309	broad.mit.edu	36	4	186617203	186617204	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145411	exon5	c.1421_1422insA	p.I474fs	.	.	.
NBAS	51594	broad.mit.edu	36	2	15535806	15535807	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015909	exon13	c.1142_1143insA	p.I381fs	.	.	.
AOX1	316	broad.mit.edu	36	2	201185653	201185654	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159	exon14	c.1340_1341insA	p.V447fs	.	.	.
SMEK2	57223	broad.mit.edu	36	2	55679454	55679455	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122964	exon4	c.523_524insA	p.L175fs	.	.	.
ARPC5L	81873	broad.mit.edu	36	9	126679038	126679039	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030978	exon4	c.460_461insA	p.X154delinsX	.	.	.
CPXM2	119587	broad.mit.edu	36	10	125629795	125629796	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198148	exon2	c.325_326insA	p.V109fs	.	.	.
LMNB1	4001	broad.mit.edu	36	5	126168472	126168473	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005573	exon2	c.465_466insA	p.D155fs	.	.	.
SLC35B3	51000	broad.mit.edu	36	6	8375087	8375088	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
EFHA1	221154	broad.mit.edu	36	13	20967459	20967460	+	Splice_Site	INS	-	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
ZAN	7455	broad.mit.edu	36	7	100172129	100172129	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173059	exon4	c.G194A	p.R65Q	.	.	.
ZAN	7455	broad.mit.edu	36	7	100203498	100203498	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173059	exon26	c.C4969T	p.R1657C	.	.	.
ZAN	7455	broad.mit.edu	36	7	100204214	100204214	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173059	exon27	c.G5087T	p.R1696I	.	.	.
EPHB4	2050	broad.mit.edu	36	7	100239103	100239103	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004444	exon17	c.A2880C	p.K960N	.	.	.
EPHB4	2050	broad.mit.edu	36	7	100249242	100249242	+	Missense_Mutation	SNP	G	A	A	rs60537976	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004444	exon10	c.C1724T	p.S575L	.	.	.
ACHE	43	broad.mit.edu	36	7	100327941	100327941	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000665	exon3	c.A1503C	p.K501N	.	.	.
MUC17	140453	broad.mit.edu	36	7	100463936	100463936	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040105	exon3	c.C2519A	p.S840Y	.	.	.
MUC17	140453	broad.mit.edu	36	7	100464113	100464113	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040105	exon3	c.C2696A	p.S899Y	.	.	.
MUC17	140453	broad.mit.edu	36	7	100465252	100465252	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040105	exon3	c.C3835A	p.L1279I	.	.	.
MUC17	140453	broad.mit.edu	36	7	100467665	100467665	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040105	exon3	c.C6248T	p.S2083L	.	.	.
TRIM56	81844	broad.mit.edu	36	7	100519257	100519257	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030961	exon3	c.C1944T	p.F648F	.	.	.
SERPINE1	5054	broad.mit.edu	36	7	100558617	100558617	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000602	exon2	c.G223A	p.G75R	.	.	.
SERPINE1	5054	broad.mit.edu	36	7	100563794	100563794	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000602	exon5	c.G799T	p.E267X	.	.	.
EMID2	136227	broad.mit.edu	36	7	100850017	100850017	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133457	exon2	c.C198T	p.C66C	.	.	.
MYL10	93408	broad.mit.edu	36	7	101052184	101052184	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138403	exon5	c.G366T	p.K122N	.	.	.
CUX1	1523	broad.mit.edu	36	7	101711890	101711890	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181500	exon21	c.C1854T	p.I618I	.	.	.
FBXL13	222235	broad.mit.edu	36	7	102306105	102306105	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001111038	exon15	c.C1417A	p.L473I	.	.	.
LRRC17	10234	broad.mit.edu	36	7	102372168	102372168	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031692	exon4	c.A1204C	p.K402Q	.	.	.
NAPEPLD	222236	broad.mit.edu	36	7	102547705	102547705	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198990	exon3	c.C496T	p.R166C	.	.	.
SLC26A5	375611	broad.mit.edu	36	7	102825635	102825635	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206884	exon9	c.C951T	p.V317V	.	.	.
SLC26A5	375611	broad.mit.edu	36	7	102848458	102848458	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206884	exon4	c.C255A	p.V85V	.	.	.
RELN	5649	broad.mit.edu	36	7	102938642	102938642	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005045	exon51	c.C8166A	p.F2722L	.	.	.
RELN	5649	broad.mit.edu	36	7	102970539	102970539	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005045	exon43	c.C6546A	p.F2182L	.	.	.
RELN	5649	broad.mit.edu	36	7	102981474	102981474	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005045	exon39	c.C5838T	p.I1946I	.	.	.
RELN	5649	broad.mit.edu	36	7	102985659	102985659	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005045	exon37	c.T5603G	p.F1868C	.	.	.
RELN	5649	broad.mit.edu	36	7	102989634	102989634	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005045	exon35	c.C5213A	p.S1738Y	.	.	.
RELN	5649	broad.mit.edu	36	7	102992992	102992992	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005045	exon34	c.C5179T	p.R1727W	.	.	.
RELN	5649	broad.mit.edu	36	7	102994328	102994328	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005045	exon32	c.C4703T	p.A1568V	.	.	.
RELN	5649	broad.mit.edu	36	7	103017383	103017383	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005045	exon28	c.C4041T	p.C1347C	.	.	.
RELN	5649	broad.mit.edu	36	7	103080325	103080325	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005045	exon14	c.T1672C	p.F558L	.	.	.
LHFPL3	375612	broad.mit.edu	36	7	103756571	103756571	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199000	exon1	c.C108T	p.I36I	.	.	.
MLL5	55904	broad.mit.edu	36	7	104505000	104505000	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182931	exon11	c.G1014T	p.K338N	.	.	.
MLL5	55904	broad.mit.edu	36	7	104533591	104533591	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182931	exon19	c.G2501T	p.R834I	.	.	.
MLL5	55904	broad.mit.edu	36	7	104534369	104534369	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182931	exon20	c.G2761T	p.E921X	.	.	.
MLL5	55904	broad.mit.edu	36	7	104534856	104534856	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182931	exon21	c.C2855A	p.S952Y	.	.	.
MLL5	55904	broad.mit.edu	36	7	104535186	104535186	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182931	exon22	c.G3046T	p.E1016X	.	.	.
MLL5	55904	broad.mit.edu	36	7	104535439	104535439	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182931	exon22	c.G3299A	p.R1100Q	.	.	.
MLL5	55904	broad.mit.edu	36	7	104538034	104538034	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182931	exon24	c.G3827A	p.R1276Q	.	.	.
SRPK2	6733	broad.mit.edu	36	7	104631314	104631314	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182691	exon2	c.A193G	p.K65E	.	.	.
SRPK2	6733	broad.mit.edu	36	7	104696509	104696509	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182691	exon1	c.G18T	p.E6D	.	.	.
PUS7	54517	broad.mit.edu	36	7	104893021	104893021	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019042	exon13	c.C1602T	p.F534F	.	.	.
PUS7	54517	broad.mit.edu	36	7	104919228	104919228	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019042	exon7	c.T915G	p.V305V	.	.	.
RINT1	60561	broad.mit.edu	36	7	104982779	104982779	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021930	exon11	c.G1540T	p.D514Y	.	.	.
CDHR3	222256	broad.mit.edu	36	7	105458511	105458511	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152750	exon18	c.C2342T	p.A781V	.	.	.
PIK3CG	5294	broad.mit.edu	36	7	106295957	106295957	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002649	exon2	c.G715A	p.D239N	.	.	.
PIK3CG	5294	broad.mit.edu	36	7	106300246	106300246	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002649	exon3	c.G2024A	p.S675N	.	.	.
PIK3CG	5294	broad.mit.edu	36	7	106313838	106313838	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002649	exon10	c.C2895T	p.F965F	.	.	.
HBP1	26959	broad.mit.edu	36	7	106610148	106610148	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012257	exon3	c.A264C	p.R88S	.	.	.
HBP1	26959	broad.mit.edu	36	7	106617952	106617952	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012257	exon8	c.G1021A	p.D341N	.	.	.
COG5	10466	broad.mit.edu	36	7	106840278	106840278	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001161520	exon7	c.G667T	p.E223X	.	.	.
GPR22	2845	broad.mit.edu	36	7	106902092	106902092	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005295	exon3	c.C351T	p.F117F	.	.	.
SLC26A4	5172	broad.mit.edu	36	7	107091081	107091081	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000441	exon3	c.C269T	p.S90L	.	.	.
SLC26A4	5172	broad.mit.edu	36	7	107123618	107123618	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000441	exon13	c.T1442G	p.I481S	.	.	.
CBLL1	79872	broad.mit.edu	36	7	107176666	107176666	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024814	exon2	c.C119T	p.P40L	.	.	.
CBLL1	79872	broad.mit.edu	36	7	107181098	107181098	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024814	exon3	c.T188G	p.F63C	.	.	.
SLC26A3	1811	broad.mit.edu	36	7	107218761	107218761	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000111	exon5	c.G538A	p.A180T	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107483413	107483413	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007356	exon25	c.G3655T	p.D1219Y	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107493585	107493585	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007356	exon21	c.C2694A	p.Y898X	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107530771	107530771	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007356	exon10	c.C1134T	p.F378F	.	.	.
PNPLA8	50640	broad.mit.edu	36	7	107907031	107907031	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015723	exon11	c.C1907T	p.S636L	.	.	.
PNPLA8	50640	broad.mit.edu	36	7	107930196	107930196	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015723	exon6	c.C1333A	p.L445I	.	.	.
DNAJB9	4189	broad.mit.edu	36	7	107999513	107999513	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012328	exon2	c.C107T	p.S36L	.	.	.
DNAJB9	4189	broad.mit.edu	36	7	108000945	108000945	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012328	exon3	c.G584T	p.R195I	.	.	.
NDUFA4	4697	broad.mit.edu	36	7	10944994	10944994	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002489	exon2	c.C97A	p.L33I	.	.	.
PHF14	9678	broad.mit.edu	36	7	11029075	11029075	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014660	exon6	c.G1261T	p.D421Y	.	.	.
LRRN3	54674	broad.mit.edu	36	7	110551951	110551951	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018334	exon2	c.T1887G	p.L629L	.	.	.
DOCK4	9732	broad.mit.edu	36	7	111174602	111174602	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014705	exon42	c.T4523G	p.V1508G	.	.	.
DOCK4	9732	broad.mit.edu	36	7	111295440	111295440	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014705	exon22	c.G2116T	p.E706X	.	.	.
DOCK4	9732	broad.mit.edu	36	7	111416442	111416442	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014705	exon6	c.G328A	p.D110N	.	.	.
IFRD1	3475	broad.mit.edu	36	7	111889338	111889338	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001550	exon7	c.C665A	p.S222Y	.	.	.
IFRD1	3475	broad.mit.edu	36	7	111900072	111900072	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001550	exon11	c.C1186T	p.R396X	.	.	.
TMEM168	64418	broad.mit.edu	36	7	112202574	112202574	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022484	exon3	c.C1164T	p.I388I	.	.	.
TMEM168	64418	broad.mit.edu	36	7	112212106	112212106	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022484	exon2	c.C11A	p.S4X	.	.	.
PPP1R3A	5506	broad.mit.edu	36	7	113306771	113306771	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002711	exon4	c.T1612G	p.L538V	.	.	.
FOXP2	93986	broad.mit.edu	36	7	114091603	114091603	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014491	exon16	c.C1879T	p.P627S	.	.	.
THSD7A	221981	broad.mit.edu	36	7	11430901	11430901	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015204	exon15	c.C3330A	p.T1110T	.	.	.
CAPZA2	830	broad.mit.edu	36	7	116315459	116315459	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006136	exon2	c.G82T	p.E28X	.	.	.
CAPZA2	830	broad.mit.edu	36	7	116343371	116343371	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006136	exon9	c.G679T	p.E227X	.	.	.
ASZ1	136991	broad.mit.edu	36	7	116810289	116810289	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130768	exon7	c.G799T	p.D267Y	.	.	.
CFTR	1080	broad.mit.edu	36	7	116975977	116975977	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000492	exon10	c.G1256T	p.R419I	.	.	.
CFTR	1080	broad.mit.edu	36	7	117015105	117015105	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000492	exon12	c.C1661A	p.A554E	.	.	.
CFTR	1080	broad.mit.edu	36	7	117037911	117037911	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000492	exon19	c.G3091A	p.A1031T	.	.	.
CFTR	1080	broad.mit.edu	36	7	117069817	117069817	+	Silent	SNP	C	T	T	rs1800129	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000492	exon23	c.C3807T	p.I1269I	.	.	.
CTTNBP2	83992	broad.mit.edu	36	7	117152516	117152516	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033427	exon18	c.G4087A	p.A1363T	.	.	.
CTTNBP2	83992	broad.mit.edu	36	7	117155418	117155418	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033427	exon17	c.C4016A	p.S1339Y	.	.	.
CTTNBP2	83992	broad.mit.edu	36	7	117205012	117205012	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033427	exon8	c.T2567C	p.V856A	.	.	.
CTTNBP2	83992	broad.mit.edu	36	7	117218587	117218587	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033427	exon4	c.G1899A	p.T633T	.	.	.
CTTNBP2	83992	broad.mit.edu	36	7	117219621	117219621	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033427	exon4	c.C865T	p.R289C	.	.	.
ANKRD7	56311	broad.mit.edu	36	7	117664135	117664135	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019644	exon5	c.C631A	p.L211I	.	.	.
C7orf58	79974	broad.mit.edu	36	7	120527335	120527335	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024913	exon7	c.C869T	p.S290L	.	.	.
C7orf58	79974	broad.mit.edu	36	7	120569382	120569382	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024913	exon16	c.G2006A	p.R669H	.	.	.
C7orf58	79974	broad.mit.edu	36	7	120664098	120664098	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024913	exon17	c.G2150T	p.R717I	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121438884	121438884	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002851	exon12	c.G2548A	p.E850K	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121439860	121439860	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002851	exon12	c.C3524A	p.S1175Y	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121481265	121481265	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002851	exon26	c.C6318A	p.F2106L	.	.	.
AASS	10157	broad.mit.edu	36	7	121520351	121520351	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005763	exon16	c.G1753T	p.E585X	.	.	.
FEZF1	389549	broad.mit.edu	36	7	121730955	121730955	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001024613	exon1	c.A773C	p.K258T	.	.	.
CADPS2	93664	broad.mit.edu	36	7	121772929	121772929	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001167940	exon28	c.C3559T	p.R1187W	.	.	.
CADPS2	93664	broad.mit.edu	36	7	121834940	121834940	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001167940	exon20	c.T2648G	p.F883C	.	.	.
RNF148	378925	broad.mit.edu	36	7	122129313	122129313	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198085	exon1	c.T728C	p.V243A	.	.	.
RNF148	378925	broad.mit.edu	36	7	122130027	122130027	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198085	exon1	c.G14T	p.R5I	.	.	.
TAS2R16	50833	broad.mit.edu	36	7	122422411	122422411	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016945	exon1	c.A514C	p.N172H	.	.	.
TAS2R16	50833	broad.mit.edu	36	7	122422579	122422579	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016945	exon1	c.C346A	p.L116I	.	.	.
SLC13A1	6561	broad.mit.edu	36	7	122556229	122556229	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022444	exon10	c.G1039T	p.E347X	.	.	.
SLC13A1	6561	broad.mit.edu	36	7	122599103	122599103	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022444	exon3	c.G320T	p.R107I	.	.	.
SLC13A1	6561	broad.mit.edu	36	7	122627232	122627232	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022444	exon1	c.A5C	p.K2T	.	.	.
IQUB	154865	broad.mit.edu	36	7	122924143	122924143	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178827	exon7	c.G1077A	p.E359E	.	.	.
LMOD2	442721	broad.mit.edu	36	7	123083301	123083301	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207163	exon1	c.C48T	p.I16I	.	.	.
LMOD2	442721	broad.mit.edu	36	7	123089718	123089718	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207163	exon2	c.C842T	p.T281M	.	.	.
WASL	8976	broad.mit.edu	36	7	123123939	123123939	+	Nonsense_Mutation	SNP	C	A	A	rs3209159	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003941	exon6	c.G559T	p.E187X	.	.	.
WASL	8976	broad.mit.edu	36	7	123133611	123133611	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003941	exon4	c.G392A	p.R131Q	.	.	.
HYAL4	23553	broad.mit.edu	36	7	123295617	123295617	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012269	exon3	c.T54A	p.H18Q	.	.	.
HYAL4	23553	broad.mit.edu	36	7	123296289	123296289	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012269	exon3	c.C726A	p.V242V	.	.	.
SPAM1	6677	broad.mit.edu	36	7	123382311	123382311	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001174044	exon4	c.G979A	p.E327K	.	.	.
SPAM1	6677	broad.mit.edu	36	7	123386833	123386833	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001174044	exon5	c.C1104T	p.N368N	.	.	.
GRM8	2918	broad.mit.edu	36	7	125960814	125960814	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127323	exon9	c.G1858A	p.E620K	.	.	.
SCIN	85477	broad.mit.edu	36	7	12631926	12631926	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001112706	exon7	c.C907T	p.P303S	.	.	.
GRM8	2918	broad.mit.edu	36	7	126329961	126329961	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001127323	exon6	c.C1027T	p.R343X	.	.	.
GRM8	2918	broad.mit.edu	36	7	126533856	126533856	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127323	exon3	c.G657A	p.S219S	.	.	.
ZNF800	168850	broad.mit.edu	36	7	126813356	126813356	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176814	exon3	c.C151T	p.R51X	.	.	.
GCC1	79571	broad.mit.edu	36	7	127011545	127011545	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024523	exon1	c.C928T	p.R310X	.	.	.
PAX4	5078	broad.mit.edu	36	7	127040745	127040745	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006193	exon5	c.G616A	p.V206M	.	.	.
PAX4	5078	broad.mit.edu	36	7	127041794	127041794	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006193	exon3	c.G390A	p.P130P	.	.	.
SND1	27044	broad.mit.edu	36	7	127332051	127332051	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014390	exon14	c.C1470T	p.G490G	.	.	.
LRRC4	64101	broad.mit.edu	36	7	127456714	127456714	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022143	exon2	c.G1216A	p.D406N	.	.	.
LEP	3952	broad.mit.edu	36	7	127681950	127681950	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000230	exon3	c.C402T	p.V134V	.	.	.
METTL2B	55798	broad.mit.edu	36	7	127906545	127906545	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018396	exon3	c.C300A	p.F100L	.	.	.
FAM71F2	346653	broad.mit.edu	36	7	128102961	128102961	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012454	exon2	c.C177A	p.F59L	.	.	.
FAM71F2	346653	broad.mit.edu	36	7	128104930	128104930	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012454	exon3	c.G442A	p.E148K	.	.	.
CALU	813	broad.mit.edu	36	7	128181660	128181660	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001219	exon3	c.G330T	p.E110D	.	.	.
CCDC136	64753	broad.mit.edu	36	7	128228526	128228526	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022742	exon4	c.G397T	p.E133X	.	.	.
CCDC136	64753	broad.mit.edu	36	7	128239198	128239198	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022742	exon13	c.C2137T	p.R713W	.	.	.
FLNC	2318	broad.mit.edu	36	7	128270792	128270792	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001458	exon18	c.C2736T	p.G912G	.	.	.
FLNC	2318	broad.mit.edu	36	7	128280033	128280033	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001458	exon36	c.C5995A	p.R1999R	.	.	.
AHCYL2	23382	broad.mit.edu	36	7	128827406	128827406	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015328	exon6	c.A863G	p.D288G	.	.	.
AHCYL2	23382	broad.mit.edu	36	7	128832251	128832251	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015328	exon8	c.T1103G	p.F368C	.	.	.
NRF1	4899	broad.mit.edu	36	7	129144307	129144307	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005011	exon9	c.T1078C	p.W360R	.	.	.
ZC3HC1	51530	broad.mit.edu	36	7	129445769	129445769	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016478	exon10	c.C1480T	p.R494W	.	.	.
ZC3HC1	51530	broad.mit.edu	36	7	129456042	129456042	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016478	exon5	c.T557G	p.F186C	.	.	.
ZC3HC1	51530	broad.mit.edu	36	7	129478418	129478418	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016478	exon1	c.G25T	p.A9S	.	.	.
CPA5	93979	broad.mit.edu	36	7	129774878	129774878	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127441	exon5	c.A152C	p.K51T	.	.	.
CPA5	93979	broad.mit.edu	36	7	129788259	129788259	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127441	exon8	c.G472A	p.D158N	.	.	.
TSGA14	95681	broad.mit.edu	36	7	129829799	129829799	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018718	exon7	c.C500A	p.P167H	.	.	.
MEST	4232	broad.mit.edu	36	7	129922585	129922585	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002402	exon2	c.G167A	p.R56H	.	.	.
MEST	4232	broad.mit.edu	36	7	129926965	129926965	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002402	exon7	c.G549T	p.E183D	.	.	.
TSGA13	114960	broad.mit.edu	36	7	130007147	130007147	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052933	exon7	c.C552T	p.F184F	.	.	.
TSGA13	114960	broad.mit.edu	36	7	130008174	130008174	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052933	exon6	c.A470C	p.K157T	.	.	.
MKLN1	4289	broad.mit.edu	36	7	130734705	130734705	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013255	exon6	c.G676A	p.E226K	.	.	.
MKLN1	4289	broad.mit.edu	36	7	130798624	130798624	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013255	exon13	c.G1634T	p.R545I	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131481862	131481862	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020911	exon28	c.C5002T	p.R1668W	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131494904	131494904	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020911	exon25	c.G4528T	p.A1510S	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131515920	131515920	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020911	exon19	c.G3604A	p.E1202K	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131824630	131824630	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181775	exon4	c.T1332G	p.S444S	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131842960	131842960	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181775	exon3	c.C1033T	p.R345W	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131843885	131843885	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181775	exon3	c.G108A	p.K36K	.	.	.
EXOC4	60412	broad.mit.edu	36	7	132691662	132691662	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001037126	exon6	c.G802T	p.E268X	.	.	.
EXOC4	60412	broad.mit.edu	36	7	133332791	133332791	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021807	exon15	c.C2213A	p.S738Y	.	.	.
LRGUK	136332	broad.mit.edu	36	7	133493412	133493412	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144648	exon6	c.T755G	p.I252S	.	.	.
AKR1B1	231	broad.mit.edu	36	7	133782599	133782599	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001628	exon8	c.G816T	p.E272D	.	.	.
CALD1	800	broad.mit.edu	36	7	134269362	134269362	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033138	exon5	c.G1302A	p.K434K	.	.	.
CALD1	800	broad.mit.edu	36	7	134282919	134282919	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033157	exon8	c.C966T	p.F322F	.	.	.
WDR91	29062	broad.mit.edu	36	7	134539679	134539679	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014149	exon6	c.C772T	p.R258C	.	.	.
NUP205	23165	broad.mit.edu	36	7	134906419	134906419	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015135	exon2	c.G55T	p.D19Y	.	.	.
SLC13A4	26266	broad.mit.edu	36	7	135041456	135041456	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012450	exon4	c.C498T	p.L166L	.	.	.
CHRM2	1129	broad.mit.edu	36	7	136350357	136350357	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000739	exon4	c.G205T	p.D69Y	.	.	.
CHRM2	1129	broad.mit.edu	36	7	136350909	136350909	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000739	exon4	c.G757A	p.D253N	.	.	.
PTN	5764	broad.mit.edu	36	7	136563360	136563360	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002825	exon5	c.G454A	p.E152K	.	.	.
DGKI	9162	broad.mit.edu	36	7	136887743	136887743	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004717	exon20	c.G2059A	p.A687T	.	.	.
CREB3L2	64764	broad.mit.edu	36	7	137239281	137239281	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194071	exon7	c.G938T	p.R313I	.	.	.
TRIM24	8805	broad.mit.edu	36	7	137912778	137912778	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003852	exon14	c.C2059T	p.R687X	.	.	.
ATP6V0A4	50617	broad.mit.edu	36	7	138097716	138097716	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130840	exon6	c.G421A	p.E141K	.	.	.
ATP6V0A4	50617	broad.mit.edu	36	7	138106516	138106516	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130840	exon2	c.G17A	p.R6Q	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138216778	138216778	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164665	exon11	c.G4125A	p.A1375A	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138216865	138216865	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164665	exon11	c.G4038T	p.Q1346H	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138253893	138253893	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164665	exon2	c.G1019T	p.R340I	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138254215	138254215	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164665	exon2	c.C697T	p.R233W	.	.	.
ZC3HAV1	56829	broad.mit.edu	36	7	138383022	138383022	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020119	exon13	c.C2567T	p.T856M	.	.	.
ZC3HAV1	56829	broad.mit.edu	36	7	138414871	138414871	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024625	exon4	c.C1356T	p.S452S	.	.	.
ZC3HAV1	56829	broad.mit.edu	36	7	138424981	138424981	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024625	exon2	c.G373A	p.E125K	.	.	.
TTC26	79989	broad.mit.edu	36	7	138470047	138470047	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144920	exon2	c.G110T	p.R37I	.	.	.
TTC26	79989	broad.mit.edu	36	7	138513878	138513878	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144920	exon14	c.C1236T	p.G412G	.	.	.
LUC7L2	51631	broad.mit.edu	36	7	138757537	138757537	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016019	exon10	c.C1090T	p.R364W	.	.	.
ETV1	2115	broad.mit.edu	36	7	13937895	13937895	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001163147	exon8	c.C559T	p.R187C	.	.	.
JHDM1D	80853	broad.mit.edu	36	7	139437391	139437391	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030647	exon20	c.G2798T	p.R933I	.	.	.
SLC37A3	84255	broad.mit.edu	36	7	139689772	139689772	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207113	exon13	c.G1235A	p.R412H	.	.	.
DENND2A	27147	broad.mit.edu	36	7	139893206	139893206	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015689	exon11	c.C2040A	p.I680I	.	.	.
DENND2A	27147	broad.mit.edu	36	7	139913439	139913439	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015689	exon7	c.C1695T	p.F565F	.	.	.
DENND2A	27147	broad.mit.edu	36	7	139931945	139931945	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015689	exon3	c.C1158T	p.I386I	.	.	.
BRAF	673	broad.mit.edu	36	7	140147800	140147800	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004333	exon6	c.T741G	p.F247L	.	.	.
AGK	55750	broad.mit.edu	36	7	140987541	140987541	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018238	exon12	c.T751C	p.S251P	.	.	.
TAS2R4	50832	broad.mit.edu	36	7	141124764	141124764	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016944	exon1	c.C7T	p.R3W	.	.	.
TAS2R4	50832	broad.mit.edu	36	7	141124865	141124865	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016944	exon1	c.C108A	p.V36V	.	.	.
TAS2R5	54429	broad.mit.edu	36	7	141137290	141137290	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018980	exon1	c.G660A	p.A220A	.	.	.
OR9A4	130075	broad.mit.edu	36	7	141265176	141265176	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001656	exon1	c.T32G	p.F11C	.	.	.
OR9A4	130075	broad.mit.edu	36	7	141265372	141265372	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001656	exon1	c.C228T	p.I76I	.	.	.
OR9A4	130075	broad.mit.edu	36	7	141265480	141265480	+	Silent	SNP	C	T	T	rs73529456	by-1000genomes	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001656	exon1	c.C336T	p.F112F	.	.	.
TAS2R38	5726	broad.mit.edu	36	7	141319060	141319060	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176817	exon1	c.G899A	p.G300D	.	.	.
MGAM	8972	broad.mit.edu	36	7	141351844	141351844	+	Silent	SNP	G	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004668	exon2	c.G45C	p.V15V	.	.	.
MGAM	8972	broad.mit.edu	36	7	141367338	141367338	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004668	exon5	c.C544T	p.R182C	.	.	.
MGAM	8972	broad.mit.edu	36	7	141401152	141401152	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004668	exon27	c.C3289T	p.R1097C	.	.	.
MGAM	8972	broad.mit.edu	36	7	141441053	141441053	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004668	exon40	c.A4691C	p.E1564A	.	.	.
TRYX3	136541	broad.mit.edu	36	7	141598546	141598546	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001317	exon6	c.G699T	p.W233C	.	.	.
TRPV6	55503	broad.mit.edu	36	7	142293350	142293350	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018646	exon1	c.A34G	p.I12V	.	.	.
TRPV5	56302	broad.mit.edu	36	7	142315822	142315822	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019841	exon15	c.G2170T	p.E724X	.	.	.
TRPV5	56302	broad.mit.edu	36	7	142316830	142316830	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019841	exon14	c.C1843T	p.R615C	.	.	.
TRPV5	56302	broad.mit.edu	36	7	142332783	142332783	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019841	exon8	c.C1085A	p.S362Y	.	.	.
TRPV5	56302	broad.mit.edu	36	7	142336333	142336333	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019841	exon5	c.G492T	p.E164D	.	.	.
KEL	3792	broad.mit.edu	36	7	142348596	142348596	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000420	exon19	c.G2064A	p.Q688Q	.	.	.
KEL	3792	broad.mit.edu	36	7	142359826	142359826	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000420	exon10	c.G1095T	p.M365I	.	.	.
OR9A2	135924	broad.mit.edu	36	7	142434246	142434246	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001658	exon1	c.C96A	p.F32L	.	.	.
PIP	5304	broad.mit.edu	36	7	142542494	142542494	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002652	exon2	c.G181T	p.E61X	.	.	.
TAS2R40	259286	broad.mit.edu	36	7	142629347	142629347	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_176882	exon1	c.C54A	p.V18V	.	.	.
CLCN1	1180	broad.mit.edu	36	7	142727912	142727912	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000083	exon3	c.G335A	p.R112K	.	.	.
CLCN1	1180	broad.mit.edu	36	7	142738529	142738529	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000083	exon9	c.C1062T	p.I354I	.	.	.
CLCN1	1180	broad.mit.edu	36	7	142749319	142749319	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000083	exon15	c.G1758T	p.K586N	.	.	.
FAM131B	9715	broad.mit.edu	36	7	142764143	142764143	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031690	exon7	c.C705T	p.S235S	.	.	.
ZYX	7791	broad.mit.edu	36	7	142790326	142790326	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003461	exon5	c.C812A	p.P271H	.	.	.
EPHA1	2041	broad.mit.edu	36	7	142805590	142805590	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005232	exon7	c.C1410T	p.S470S	.	.	.
TAS2R60	338398	broad.mit.edu	36	7	142850699	142850699	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_177437	exon1	c.C32T	p.S11L	.	.	.
TAS2R41	259287	broad.mit.edu	36	7	142885963	142885963	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_176883	exon1	c.C876T	p.S292S	.	.	.
CTAGE15P	441294	broad.mit.edu	36	7	142980258	142980258	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008747	exon1	c.G1226A	p.R409Q	.	.	.
FAM115C	285966	broad.mit.edu	36	7	143048106	143048106	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130026	exon2	c.G529T	p.D177Y	.	.	.
FAM115C	285966	broad.mit.edu	36	7	143052647	143052647	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130026	exon7	c.G2117T	p.R706I	.	.	.
CTAGE6P	340307	broad.mit.edu	36	7	143084392	143084392	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178561	exon1	c.G1293T	p.E431D	.	.	.
CTAGE6P	340307	broad.mit.edu	36	7	143084515	143084515	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178561	exon1	c.C1170A	p.F390L	.	.	.
OR2F1	26211	broad.mit.edu	36	7	143288179	143288179	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012369	exon1	c.C183A	p.F61L	.	.	.
OR2F1	26211	broad.mit.edu	36	7	143288701	143288701	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012369	exon1	c.G705T	p.K235N	.	.	.
OR6B1	135946	broad.mit.edu	36	7	143332727	143332727	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005281	exon1	c.G705A	p.A235A	.	.	.
OR2A2	442361	broad.mit.edu	36	7	143437623	143437623	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005480	exon1	c.G15T	p.Q5H	.	.	.
OR2A2	442361	broad.mit.edu	36	7	143437905	143437905	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005480	exon1	c.G297T	p.Q99H	.	.	.
OR2A9P	441295	broad.mit.edu	36	7	143646477	143646477	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001802	exon1	c.C309T	p.S103S	.	.	.
TPK1	27010	broad.mit.edu	36	7	143919457	143919457	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022445	exon7	c.C493A	p.L165I	.	.	.
TPK1	27010	broad.mit.edu	36	7	143951203	143951203	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022445	exon6	c.A343C	p.K115Q	.	.	.
TPK1	27010	broad.mit.edu	36	7	144010951	144010951	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022445	exon4	c.G169A	p.E57K	.	.	.
DGKB	1607	broad.mit.edu	36	7	14580432	14580432	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145695	exon19	c.C1703A	p.P568H	DGKB,lung,NS,Substitution - Missense,-1	.	.
CNTNAP2	26047	broad.mit.edu	36	7	146102401	146102401	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014141	exon2	c.G203T	p.R68I	.	.	.
CNTNAP2	26047	broad.mit.edu	36	7	146460440	146460440	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014141	exon8	c.T1254C	p.N418N	.	.	.
CNTNAP2	26047	broad.mit.edu	36	7	147305986	147305986	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014141	exon15	c.C2355T	p.S785S	.	.	.
DGKB	1607	broad.mit.edu	36	7	14742226	14742226	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145695	exon4	c.C287A	p.P96Q	.	.	.
C7orf33	202865	broad.mit.edu	36	7	147943352	147943352	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145304	exon3	c.G460A	p.V154I	.	.	.
ZNF425	155054	broad.mit.edu	36	7	148432419	148432419	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001661	exon4	c.G1477A	p.D493N	.	.	.
ZNF425	155054	broad.mit.edu	36	7	148433586	148433586	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001661	exon4	c.G310A	p.E104K	.	.	.
ZNF398	57541	broad.mit.edu	36	7	148507657	148507657	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020781	exon7	c.G1247A	p.R416H	.	.	.
ZNF282	8427	broad.mit.edu	36	7	148534822	148534822	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003575	exon3	c.G687T	p.E229D	.	.	.
ZNF212	7988	broad.mit.edu	36	7	148578190	148578190	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012256	exon2	c.G32A	p.R11K	.	.	.
ZNF212	7988	broad.mit.edu	36	7	148578514	148578514	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012256	exon2	c.G356A	p.R119H	.	.	.
LOC155060	155060	broad.mit.edu	36	7	148594748	148594748	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001195220	exon2	c.C414T	p.A138A	.	.	.
ZNF467	168544	broad.mit.edu	36	7	149098484	149098484	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207336	exon3	c.G129T	p.E43D	.	.	.
SSPO	23145	broad.mit.edu	36	7	149133454	149133454	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198455	exon55	c.G8338T	p.D2780Y	.	.	.
ZNF862	643641	broad.mit.edu	36	7	149188719	149188719	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099220	exon7	c.G1537T	p.V513L	.	.	.
GIMAP8	155038	broad.mit.edu	36	7	149795210	149795210	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175571	exon2	c.G491A	p.R164Q	.	.	.
GIMAP7	168537	broad.mit.edu	36	7	149848102	149848102	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153236	exon2	c.C107A	p.S36Y	.	.	.
GIMAP7	168537	broad.mit.edu	36	7	149848393	149848393	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153236	exon2	c.G398A	p.R133H	.	.	.
GIMAP5	55340	broad.mit.edu	36	7	150070832	150070832	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199577	exon6	c.C1284A	p.F428L	.	.	.
TMEM176B	28959	broad.mit.edu	36	7	150122056	150122056	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001101312	exon3	c.C241A	p.L81I	.	.	.
ABP1	26	broad.mit.edu	36	7	150184657	150184657	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001091	exon2	c.C166T	p.L56L	.	.	.
ATG9B	285973	broad.mit.edu	36	7	150351186	150351186	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173681	exon4	c.C700T	p.R234X	.	.	.
ABCB8	11194	broad.mit.edu	36	7	150363957	150363957	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007188	exon7	c.G983A	p.R328H	.	.	.
ABCF2	10061	broad.mit.edu	36	7	150547151	150547151	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005692	exon8	c.C949T	p.R317W	.	.	.
NUB1	51667	broad.mit.edu	36	7	150695111	150695111	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016118	exon9	c.C954T	p.Y318Y	.	.	.
WDR86	349136	broad.mit.edu	36	7	150728255	150728255	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198285	exon2	c.G169A	p.E57K	.	.	.
PRKAG2	51422	broad.mit.edu	36	7	150893771	150893771	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024429	exon8	c.G644A	p.R215Q	.	.	.
GALNTL5	168391	broad.mit.edu	36	7	151330858	151330858	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145292	exon6	c.G785T	p.R262I	.	.	.
MLL3	58508	broad.mit.edu	36	7	151504691	151504691	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170606	exon38	c.C8780T	p.S2927F	.	.	.
MLL3	58508	broad.mit.edu	36	7	151505448	151505448	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170606	exon38	c.T8023G	p.L2675V	.	.	.
MLL3	58508	broad.mit.edu	36	7	151511054	151511054	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170606	exon35	c.C5203T	p.L1735F	.	.	.
MLL3	58508	broad.mit.edu	36	7	151515476	151515476	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170606	exon33	c.T4812G	p.F1604L	.	.	.
MLL3	58508	broad.mit.edu	36	7	151576388	151576388	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170606	exon14	c.C2064A	p.V688V	.	.	.
TMEM195	392636	broad.mit.edu	36	7	15393597	15393597	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004320	exon9	c.C916A	p.P306T	.	.	.
TMEM195	392636	broad.mit.edu	36	7	15397050	15397050	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004320	exon7	c.A682G	p.N228D	.	.	.
HTR5A	3361	broad.mit.edu	36	7	154493973	154493973	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024012	exon1	c.C431T	p.T144M	.	.	.
HTR5A	3361	broad.mit.edu	36	7	154494165	154494165	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024012	exon1	c.C623T	p.A208V	.	.	.
RBM33	155435	broad.mit.edu	36	7	155230464	155230464	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_053043	exon14	c.G2386T	p.E796X	.	.	.
NOM1	64434	broad.mit.edu	36	7	156436077	156436077	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138400	exon1	c.G885T	p.K295N	.	.	.
NOM1	64434	broad.mit.edu	36	7	156438037	156438037	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138400	exon2	c.A1096C	p.K366Q	.	.	.
UBE3C	9690	broad.mit.edu	36	7	156692938	156692938	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014671	exon12	c.C1504A	p.L502I	.	.	.
PTPRN2	5799	broad.mit.edu	36	7	157034455	157034455	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130843	exon21	c.C2835T	p.I945I	.	.	.
PTPRN2	5799	broad.mit.edu	36	7	157619144	157619144	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130843	exon9	c.C1542T	p.I514I	.	.	.
VIPR2	7434	broad.mit.edu	36	7	158528562	158528562	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003382	exon6	c.C522A	p.I174I	.	.	.
ISPD	729920	broad.mit.edu	36	7	16314759	16314759	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001101417	exon3	c.G553A	p.E185K	.	.	.
BZW2	28969	broad.mit.edu	36	7	16680578	16680578	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014038	exon3	c.C75T	p.F25F	.	.	.
BZW2	28969	broad.mit.edu	36	7	16712215	16712215	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014038	exon12	c.G1237A	p.E413K	.	.	.
AHR	196	broad.mit.edu	36	7	17336164	17336164	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001621	exon5	c.C514T	p.R172C	.	.	.
AHR	196	broad.mit.edu	36	7	17346183	17346183	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001621	exon10	c.G2209T	p.D737Y	.	.	.
SNX13	23161	broad.mit.edu	36	7	17820987	17820987	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015132	exon20	c.C2059T	p.R687C	.	.	.
SNX13	23161	broad.mit.edu	36	7	17846111	17846111	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015132	exon13	c.C1203A	p.F401L	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18597761	18597761	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178423	exon5	c.C504T	p.S168S	.	.	.
TWISTNB	221830	broad.mit.edu	36	7	19704548	19704548	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001002926	exon4	c.G933T	p.K311N	.	.	.
TWISTNB	221830	broad.mit.edu	36	7	19710960	19710960	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001002926	exon2	c.T363G	p.V121V	.	.	.
MACC1	346389	broad.mit.edu	36	7	20166240	20166240	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182762	exon5	c.G269T	p.R90I	.	.	.
ITGB8	3696	broad.mit.edu	36	7	20408049	20408049	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002214	exon10	c.G1462T	p.D488Y	.	.	.
ABCB5	340273	broad.mit.edu	36	7	20653779	20653779	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001163941	exon10	c.T1078G	p.F360V	.	.	.
ABCB5	340273	broad.mit.edu	36	7	20656215	20656215	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001163941	exon12	c.G1252A	p.A418T	.	.	.
ABCB5	340273	broad.mit.edu	36	7	20704583	20704583	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178559	exon8	c.A704C	p.K235T	.	.	.
ABCB5	340273	broad.mit.edu	36	7	20751437	20751437	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178559	exon17	c.G1945T	p.A649S	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21595355	21595355	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003777	exon12	c.T1978G	p.L660V	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21607189	21607189	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003777	exon17	c.A3292G	p.K1098E	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21607591	21607591	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003777	exon18	c.G3478T	p.E1160X	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21612685	21612685	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003777	exon19	c.C3765T	p.D1255D	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21621368	21621368	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003777	exon21	c.G3964T	p.E1322X	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21687728	21687728	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003777	exon31	c.G5383A	p.E1795K	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21693333	21693333	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003777	exon33	c.G5735T	p.R1912I	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21693596	21693596	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003777	exon34	c.C5872A	p.L1958I	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21696918	21696918	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003777	exon35	c.C5957A	p.S1986Y	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21779935	21779935	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003777	exon56	c.T9151G	p.F3051V	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21824418	21824418	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003777	exon65	c.C10649A	p.S3550Y	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21858645	21858645	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003777	exon67	c.T10954G	p.X3652G	.	.	.
CDCA7L	55536	broad.mit.edu	36	7	21912516	21912516	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127371	exon5	c.G699T	p.E233D	.	.	.
CDCA7L	55536	broad.mit.edu	36	7	21914435	21914435	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127371	exon3	c.G381T	p.Q127H	.	.	.
NUDT1	4521	broad.mit.edu	36	7	2256087	2256087	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198949	exon4	c.C291T	p.F97F	.	.	.
IL6	3569	broad.mit.edu	36	7	22733752	22733752	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000600	exon2	c.G184A	p.D62N	.	.	.
FAM126A	84668	broad.mit.edu	36	7	22967402	22967402	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032581	exon9	c.G808T	p.E270X	.	.	.
KLHL7	55975	broad.mit.edu	36	7	23158280	23158280	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031710	exon7	c.G863T	p.R288I	.	.	.
GPNMB	10457	broad.mit.edu	36	7	23266251	23266251	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005340	exon5	c.C669T	p.I223I	.	.	.
C7orf30	115416	broad.mit.edu	36	7	23315555	23315555	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138446	exon4	c.G573T	p.E191D	.	.	.
IGF2BP3	10643	broad.mit.edu	36	7	23352185	23352185	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006547	exon8	c.G840T	p.K280N	.	.	.
IGF2BP3	10643	broad.mit.edu	36	7	23353852	23353852	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006547	exon7	c.C710T	p.A237V	.	.	.
C7orf46	340277	broad.mit.edu	36	7	23690705	23690705	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199136	exon2	c.G128T	p.R43I	.	.	.
STK31	56164	broad.mit.edu	36	7	23778417	23778417	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001122833	exon15	c.G1891A	p.E631K	.	.	.
EIF3B	8662	broad.mit.edu	36	7	2377958	2377958	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003751	exon11	c.A1635C	p.E545D	.	.	.
CHST12	55501	broad.mit.edu	36	7	2439844	2439844	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018641	exon2	c.C1044T	p.D348D	.	.	.
OSBPL3	26031	broad.mit.edu	36	7	24858733	24858733	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145321	exon11	c.G1073T	p.R358I	.	.	.
NFE2L3	9603	broad.mit.edu	36	7	26184154	26184154	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004289	exon2	c.G637T	p.E213X	.	.	.
HOXA2	3199	broad.mit.edu	36	7	27107295	27107295	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006735	exon2	c.G706A	p.A236T	.	.	.
HOXA2	3199	broad.mit.edu	36	7	27108510	27108510	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006735	exon1	c.G135A	p.S45S	.	.	.
HOXA3	3200	broad.mit.edu	36	7	27114124	27114124	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030661	exon3	c.G1267A	p.D423N	.	.	.
HOXA3	3200	broad.mit.edu	36	7	27114683	27114683	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030661	exon3	c.G708T	p.K236N	.	.	.
HOXA6	3203	broad.mit.edu	36	7	27151950	27151950	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024014	exon2	c.G554A	p.R185H	.	.	.
HOXA13	3209	broad.mit.edu	36	7	27204503	27204503	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000522	exon2	c.G1006T	p.E336X	.	.	.
TAX1BP1	8887	broad.mit.edu	36	7	27775844	27775844	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006024	exon5	c.G478T	p.E160X	.	.	.
TAX1BP1	8887	broad.mit.edu	36	7	27791445	27791445	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006024	exon6	c.G751A	p.E251K	.	.	.
TAX1BP1	8887	broad.mit.edu	36	7	27798272	27798272	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006024	exon9	c.G1161A	p.T387T	.	.	.
TAX1BP1	8887	broad.mit.edu	36	7	27802313	27802313	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006024	exon12	c.G1588T	p.E530X	.	.	.
TAX1BP1	8887	broad.mit.edu	36	7	27823136	27823136	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006024	exon15	c.G2039A	p.R680Q	.	.	.
CREB5	9586	broad.mit.edu	36	7	28494335	28494335	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182898	exon2	c.G21T	p.K7N	.	.	.
CREB5	9586	broad.mit.edu	36	7	28513878	28513878	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004904	exon4	c.C268T	p.R90W	.	.	.
CREB5	9586	broad.mit.edu	36	7	28692339	28692339	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001011666	exon1	c.G47T	p.R16M	.	.	.
CPVL	54504	broad.mit.edu	36	7	29036833	29036833	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031311	exon12	c.G1205A	p.G402D	.	.	.
WIPF3	644150	broad.mit.edu	36	7	29882008	29882008	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080529	exon2	c.C128T	p.P43L	.	.	.
FKBP14	55033	broad.mit.edu	36	7	30025211	30025211	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017946	exon3	c.C403T	p.R135X	.	.	.
PLEKHA8	84725	broad.mit.edu	36	7	30058907	30058907	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001197027	exon7	c.G696T	p.E232D	.	.	.
PLEKHA8	84725	broad.mit.edu	36	7	30060979	30060979	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001197027	exon8	c.C926A	p.P309Q	.	.	.
NOD1	10392	broad.mit.edu	36	7	30458855	30458855	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006092	exon6	c.C703T	p.R235C	.	.	.
CRHR2	1395	broad.mit.edu	36	7	30659641	30659641	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001883	exon12	c.G1196A	p.R399Q	.	.	.
CRHR2	1395	broad.mit.edu	36	7	30661213	30661213	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001883	exon11	c.C1062T	p.F354F	.	.	.
INMT	11185	broad.mit.edu	36	7	30759894	30759894	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006774	exon2	c.G177T	p.L59L	.	.	.
INMT	11185	broad.mit.edu	36	7	30760023	30760023	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006774	exon2	c.G306A	p.P102P	.	.	.
ADCYAP1R1	117	broad.mit.edu	36	7	31090309	31090309	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199636	exon7	c.G357A	p.T119T	.	.	.
CCDC129	223075	broad.mit.edu	36	7	31584147	31584147	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_194300	exon8	c.G744T	p.E248D	.	.	.
CCDC129	223075	broad.mit.edu	36	7	31649311	31649311	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_194300	exon11	c.G1802T	p.G601V	.	.	.
CCDC129	223075	broad.mit.edu	36	7	31658081	31658081	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_194300	exon13	c.G2715T	p.E905D	.	.	.
PDE1C	5137	broad.mit.edu	36	7	31829304	31829304	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001191056	exon14	c.C1490A	p.S497Y	.	.	.
AVL9	23080	broad.mit.edu	36	7	32558429	32558429	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015060	exon6	c.C526A	p.L176I	.	.	.
KBTBD2	25948	broad.mit.edu	36	7	32876476	32876476	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015483	exon4	c.A878G	p.E293G	.	.	.
FKBP9	11328	broad.mit.edu	36	7	33008959	33008959	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007270	exon9	c.G1519T	p.E507X	.	.	.
NPSR1	387129	broad.mit.edu	36	7	34840544	34840544	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207172	exon6	c.G704A	p.R235Q	.	.	.
DPY19L1	23333	broad.mit.edu	36	7	34951818	34951818	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015283	exon16	c.A1311T	p.Q437H	.	.	.
DPY19L1	23333	broad.mit.edu	36	7	34956003	34956003	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015283	exon14	c.C1134A	p.F378L	.	.	.
HERPUD2	64224	broad.mit.edu	36	7	35679408	35679408	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022373	exon3	c.G153A	p.T51T	.	.	.
EEPD1	80820	broad.mit.edu	36	7	36160683	36160683	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030636	exon2	c.G225T	p.K75N	.	.	.
KIAA0895	23366	broad.mit.edu	36	7	36340280	36340280	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100425	exon5	c.G1016A	p.R339Q	.	.	.
KIAA0895	23366	broad.mit.edu	36	7	36363201	36363201	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100425	exon3	c.G702T	p.K234N	.	.	.
KIAA0895	23366	broad.mit.edu	36	7	36363608	36363608	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100425	exon3	c.G295T	p.D99Y	.	.	.
ANLN	54443	broad.mit.edu	36	7	36445354	36445354	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018685	exon21	c.C2900A	p.S967Y	.	.	.
AOAH	313	broad.mit.edu	36	7	36638184	36638184	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001637	exon6	c.C504A	p.I168I	.	.	.
ELMO1	9844	broad.mit.edu	36	7	36884188	36884188	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039459	exon4	c.G334A	p.E112K	.	.	.
TARP	445347	broad.mit.edu	36	7	38271500	38271500	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001003806	exon2	c.A120C	p.E40D	.	.	.
AMPH	273	broad.mit.edu	36	7	38400197	38400197	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139316	exon17	c.C1415A	p.T472N	.	.	.
POU6F2	11281	broad.mit.edu	36	7	39092155	39092155	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007252	exon3	c.C189T	p.F63F	.	.	.
POU6F2	11281	broad.mit.edu	36	7	39345782	39345782	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007252	exon6	c.C528A	p.N176K	.	.	.
SDK1	221935	broad.mit.edu	36	7	3968894	3968894	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152744	exon9	c.C1314T	p.L438L	.	.	.
RALA	5898	broad.mit.edu	36	7	39712274	39712274	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005402	exon5	c.C526T	p.R176X	.	.	.
SDK1	221935	broad.mit.edu	36	7	3973494	3973494	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152744	exon10	c.C1448T	p.T483I	.	.	.
SDK1	221935	broad.mit.edu	36	7	4119465	4119465	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152744	exon24	c.G3453T	p.V1151V	.	.	.
SDK1	221935	broad.mit.edu	36	7	4136165	4136165	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152744	exon27	c.G4039A	p.V1347M	.	.	.
INHBA	3624	broad.mit.edu	36	7	41696190	41696190	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002192	exon3	c.G864A	p.S288S	.	.	.
INHBA	3624	broad.mit.edu	36	7	41696404	41696404	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002192	exon3	c.C650T	p.T217I	.	.	.
GLI3	2737	broad.mit.edu	36	7	41971550	41971550	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000168	exon15	c.C3646A	p.L1216I	.	.	.
GLI3	2737	broad.mit.edu	36	7	41983736	41983736	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000168	exon12	c.T1758G	p.A586A	.	.	.
GLI3	2737	broad.mit.edu	36	7	42046353	42046353	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000168	exon7	c.C837A	p.F279L	.	.	.
C7orf25	79020	broad.mit.edu	36	7	42916299	42916299	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024054	exon2	c.C726A	p.V242V	.	.	.
HECW1	23072	broad.mit.edu	36	7	43506895	43506895	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015052	exon20	c.C3510A	p.V1170V	.	.	.
HECW1	23072	broad.mit.edu	36	7	43515123	43515123	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015052	exon24	c.C3897A	p.F1299L	.	.	.
HECW1	23072	broad.mit.edu	36	7	43547350	43547350	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015052	exon25	c.C4083T	p.F1361F	.	.	.
HECW1	23072	broad.mit.edu	36	7	43548015	43548015	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015052	exon26	c.G4141T	p.E1381X	.	.	.
STK17A	9263	broad.mit.edu	36	7	43629983	43629983	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004760	exon6	c.C891A	p.F297L	.	.	.
URGCP	55665	broad.mit.edu	36	7	43883959	43883959	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077664	exon6	c.A1499G	p.D500G	.	.	.
SPDYE1	285955	broad.mit.edu	36	7	44007180	44007180	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175064	exon1	c.C31A	p.L11I	.	.	.
PGAM2	5224	broad.mit.edu	36	7	44071312	44071312	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000290	exon1	c.C342A	p.I114I	.	.	.
AEBP1	165	broad.mit.edu	36	7	44119794	44119794	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001129	exon21	c.G2886A	p.P962P	.	.	.
MYL7	58498	broad.mit.edu	36	7	44147127	44147127	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021223	exon2	c.C75A	p.V25V	.	.	.
GCK	2645	broad.mit.edu	36	7	44165240	44165240	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033507	exon1	c.C5T	p.A2V	.	.	.
YKT6	10652	broad.mit.edu	36	7	44214296	44214296	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006555	exon5	c.G433A	p.E145K	.	.	.
DDX56	54606	broad.mit.edu	36	7	44578853	44578853	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019082	exon4	c.G399T	p.E133D	.	.	.
H2AFV	94239	broad.mit.edu	36	7	44841682	44841682	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201517	exon3	c.C182A	p.S61Y	.	.	.
PURB	5814	broad.mit.edu	36	7	44890728	44890728	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033224	exon1	c.G745A	p.E249K	.	.	.
ADCY1	107	broad.mit.edu	36	7	45628852	45628852	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021116	exon4	c.C1005T	p.F335F	.	.	.
TNS3	64759	broad.mit.edu	36	7	47309112	47309112	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022748	exon22	c.G3418A	p.D1140N	.	.	.
FOXK1	221937	broad.mit.edu	36	7	4747043	4747043	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001037165	exon2	c.G609A	p.S203S	.	.	.
C7orf65	401335	broad.mit.edu	36	7	47665074	47665074	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001123065	exon3	c.A179C	p.K60T	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47814410	47814410	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138295	exon52	c.G7787A	p.R2596Q	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47853023	47853023	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138295	exon32	c.C5132A	p.S1711Y	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47892173	47892173	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138295	exon18	c.C2841A	p.P947P	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47900080	47900080	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138295	exon15	c.C2373A	p.F791L	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47910639	47910639	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138295	exon12	c.T1792C	p.S598P	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47914248	47914248	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138295	exon9	c.C1353T	p.V451V	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47935326	47935326	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138295	exon7	c.G1060T	p.G354C	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48229581	48229581	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon2	c.A209C	p.K70T	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48251113	48251113	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon8	c.C1003A	p.P335T	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48251179	48251179	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon8	c.G1069A	p.A357T	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48256082	48256082	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon11	c.G1405A	p.A469T	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48282507	48282507	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon15	c.A2535C	p.X845Y	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48283797	48283797	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon15	c.G3825T	p.K1275N	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48284701	48284701	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon15	c.G4729T	p.V1577L	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48285445	48285445	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon15	c.G5473A	p.E1825K	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48285940	48285940	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon15	c.G5968T	p.V1990F	.	.	.
RADIL	55698	broad.mit.edu	36	7	4838325	4838325	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018059	exon5	c.A1427C	p.K476T	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48402172	48402172	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon36	c.G11600A	p.R3867H	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48422555	48422555	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon39	c.G12125T	p.R4042I	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48518028	48518028	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon48	c.G13198A	p.V4400I	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48534521	48534521	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon52	c.G14020A	p.D4674N	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48597338	48597338	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon55	c.G14385A	p.T4795T	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48604955	48604955	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152701	exon56	c.G14581A	p.A4861T	.	.	.
PAPOLB	56903	broad.mit.edu	36	7	4866194	4866194	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020144	exon1	c.G1774A	p.E592K	.	.	.
PAPOLB	56903	broad.mit.edu	36	7	4867809	4867809	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020144	exon1	c.C159T	p.F53F	.	.	.
COBL	23242	broad.mit.edu	36	7	51120463	51120463	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015198	exon7	c.G990T	p.K330N	.	.	.
TNRC18	84629	broad.mit.edu	36	7	5363416	5363416	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080495	exon16	c.G4851T	p.K1617N	.	.	.
VSTM2A	222008	broad.mit.edu	36	7	54585047	54585047	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182546	exon4	c.C324A	p.I108I	.	.	.
EGFR	1956	broad.mit.edu	36	7	55178591	55178591	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201282	exon3	c.G340A	p.E114K	.	.	.
LANCL2	55915	broad.mit.edu	36	7	55466494	55466494	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018697	exon9	c.C1340T	p.S447L	.	.	.
VOPP1	81552	broad.mit.edu	36	7	55508065	55508065	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030796	exon5	c.G496A	p.E166K	.	.	.
SEPT14	346288	broad.mit.edu	36	7	55831265	55831265	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207366	exon10	c.C1134T	p.F378F	.	.	.
SEPT14	346288	broad.mit.edu	36	7	55842381	55842381	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207366	exon8	c.A882C	p.E294D	.	.	.
ZNF713	349075	broad.mit.edu	36	7	55974410	55974410	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182633	exon4	c.T510C	p.N170N	.	.	.
MRPS17	51373	broad.mit.edu	36	7	55990197	55990197	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015969	exon3	c.G225A	p.K75K	.	.	.
CCT6A	908	broad.mit.edu	36	7	56093649	56093649	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001009186	exon6	c.G691T	p.E231X	.	.	.
ZNF479	90827	broad.mit.edu	36	7	57191610	57191610	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033273	exon5	c.G1454T	p.R485I	.	.	.
RNF216	54476	broad.mit.edu	36	7	5745453	5745453	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207116	exon5	c.G930T	p.K310N	.	.	.
ZNF680	340252	broad.mit.edu	36	7	63619946	63619946	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178558	exon4	c.G621T	p.E207D	.	.	.
ZNF107	51427	broad.mit.edu	36	7	63804160	63804160	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013746	exon5	c.G43T	p.D15Y	.	.	.
ZNF107	51427	broad.mit.edu	36	7	63804389	63804389	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013746	exon5	c.C272T	p.S91L	.	.	.
ZNF107	51427	broad.mit.edu	36	7	63805146	63805146	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013746	exon5	c.T1029G	p.L343L	.	.	.
ZNF107	51427	broad.mit.edu	36	7	63805553	63805553	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013746	exon5	c.G1436A	p.R479Q	.	.	.
ZNF273	10793	broad.mit.edu	36	7	64026112	64026112	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021148	exon4	c.G971A	p.G324D	.	.	.
ZNF117	51351	broad.mit.edu	36	7	64076074	64076074	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015852	exon4	c.G1310T	p.R437I	.	.	.
ZNF117	51351	broad.mit.edu	36	7	64076830	64076830	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015852	exon4	c.G554T	p.R185I	.	.	.
ZNF117	51351	broad.mit.edu	36	7	64076914	64076914	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015852	exon4	c.G470T	p.R157I	.	.	.
ZNF117	51351	broad.mit.edu	36	7	64090051	64090051	+	5'Flank	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001007253	exon2	c.G789T	p.Q263H	.	.	.
DAGLB	221955	broad.mit.edu	36	7	6416145	6416145	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139179	exon15	c.G1867A	p.E623K	.	.	.
ZNF92	168374	broad.mit.edu	36	7	64502064	64502064	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152626	exon4	c.G1602T	p.E534D	.	.	.
KDELR2	11014	broad.mit.edu	36	7	6480362	6480362	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006854	exon2	c.C170A	p.S57X	.	.	.
ZDHHC4	55146	broad.mit.edu	36	7	6587834	6587834	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018106	exon4	c.G189A	p.T63T	.	.	.
C7orf42	55069	broad.mit.edu	36	7	66047451	66047451	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017994	exon3	c.G213T	p.E71D	.	.	.
ZNF12	7559	broad.mit.edu	36	7	6697480	6697480	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016265	exon5	c.C1618T	p.R540W	.	.	.
RSPH10B	222967	broad.mit.edu	36	7	6764053	6764053	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173565	exon3	c.G220A	p.E74K	.	.	.
C7orf28B	221960	broad.mit.edu	36	7	6818215	6818215	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198097	exon10	c.C847A	p.L283I	.	.	.
WBSCR17	64409	broad.mit.edu	36	7	70518935	70518935	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022479	exon4	c.C714T	p.T238T	.	.	.
WBSCR17	64409	broad.mit.edu	36	7	70780204	70780204	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022479	exon9	c.C1477A	p.P493T	.	.	.
CALN1	83698	broad.mit.edu	36	7	70913315	70913315	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031468	exon6	c.C600A	p.I200I	.	.	.
CALN1	83698	broad.mit.edu	36	7	71126683	71126683	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031468	exon5	c.C396T	p.G132G	.	.	.
TRIM50	135892	broad.mit.edu	36	7	72370787	72370787	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178125	exon4	c.C696T	p.F232F	.	.	.
BAZ1B	9031	broad.mit.edu	36	7	72545163	72545163	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032408	exon5	c.G596A	p.R199Q	.	.	.
WBSCR22	114049	broad.mit.edu	36	7	72736038	72736038	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017528	exon2	c.T54C	p.Y18Y	.	.	.
LAT2	7462	broad.mit.edu	36	7	73273942	73273942	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032463	exon10	c.C372T	p.F124F	.	.	.
COL28A1	340267	broad.mit.edu	36	7	7379455	7379455	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037763	exon32	c.G2607T	p.Q869H	.	.	.
COL28A1	340267	broad.mit.edu	36	7	7379626	7379626	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037763	exon32	c.G2436T	p.E812D	.	.	.
HIP1	3092	broad.mit.edu	36	7	75006669	75006669	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005338	exon30	c.G2971T	p.E991X	.	.	.
HIP1	3092	broad.mit.edu	36	7	75049346	75049346	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005338	exon6	c.G523T	p.E175X	.	.	.
STYXL1	51657	broad.mit.edu	36	7	75497756	75497756	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016086	exon2	c.G22T	p.E8X	.	.	.
MDH2	4191	broad.mit.edu	36	7	75527695	75527695	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005918	exon5	c.C498A	p.I166I	.	.	.
SRRM3	222183	broad.mit.edu	36	7	75732059	75732059	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001110199	exon9	c.G715T	p.E239X	.	.	.
MIOS	54468	broad.mit.edu	36	7	7579772	7579772	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019005	exon4	c.G1141T	p.E381X	.	.	.
DTX2	113878	broad.mit.edu	36	7	75964673	75964673	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102595	exon5	c.C1093T	p.R365C	.	.	.
FGL2	10875	broad.mit.edu	36	7	76664201	76664201	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006682	exon2	c.C651T	p.Y217Y	.	.	.
CCDC146	57639	broad.mit.edu	36	7	76749882	76749882	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020879	exon15	c.G1992T	p.M664I	.	.	.
CCDC146	57639	broad.mit.edu	36	7	76754746	76754746	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020879	exon17	c.C2331A	p.I777I	.	.	.
PTPN12	5782	broad.mit.edu	36	7	77094215	77094215	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001131009	exon12	c.A893C	p.K298T	.	.	.
PTPN12	5782	broad.mit.edu	36	7	77106484	77106484	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001131009	exon17	c.G1904A	p.R635Q	.	.	.
RSBN1L	222194	broad.mit.edu	36	7	77203766	77203766	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198467	exon2	c.G690T	p.K230N	.	.	.
RSBN1L	222194	broad.mit.edu	36	7	77217275	77217275	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198467	exon3	c.G1302T	p.K434N	.	.	.
TMEM60	85025	broad.mit.edu	36	7	77261345	77261345	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032936	exon2	c.C282A	p.L94L	.	.	.
PHTF2	57157	broad.mit.edu	36	7	77396573	77396573	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020432	exon9	c.T1217G	p.F406C	.	.	.
PHTF2	57157	broad.mit.edu	36	7	77407451	77407451	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020432	exon11	c.G1522T	p.D508Y	.	.	.
MAGI2	9863	broad.mit.edu	36	7	77723468	77723468	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012301	exon10	c.C1775A	p.S592Y	.	.	.
MAGI2	9863	broad.mit.edu	36	7	77836427	77836427	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012301	exon7	c.A1085G	p.Y362C	.	.	.
MAGI2	9863	broad.mit.edu	36	7	78920539	78920539	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012301	exon1	c.A34C	p.T12P	.	.	.
GNAI1	2770	broad.mit.edu	36	7	79678288	79678288	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002069	exon6	c.G658A	p.A220T	.	.	.
GNAT3	346562	broad.mit.edu	36	7	79979084	79979084	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102386	exon1	c.G95T	p.R32I	.	.	.
GLCCI1	113263	broad.mit.edu	36	7	8010066	8010066	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138426	exon2	c.A461G	p.D154G	.	.	.
SEMA3C	10512	broad.mit.edu	36	7	80232493	80232493	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006379	exon13	c.C1357T	p.R453W	.	.	.
GLCCI1	113263	broad.mit.edu	36	7	8091158	8091158	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138426	exon7	c.C1284A	p.V428V	.	.	.
HGF	3082	broad.mit.edu	36	7	81174561	81174561	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000601	exon14	c.C1597T	p.R533X	.	.	.
HGF	3082	broad.mit.edu	36	7	81184489	81184489	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000601	exon11	c.C1400A	p.S467Y	.	.	.
HGF	3082	broad.mit.edu	36	7	81210716	81210716	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010933	exon7	c.G739A	p.D247N	.	.	.
CACNA2D1	781	broad.mit.edu	36	7	81505359	81505359	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000722	exon11	c.C1008A	p.G336G	.	.	.
PCLO	27445	broad.mit.edu	36	7	82227926	82227926	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033026	exon24	c.C15253T	p.R5085X	.	.	.
PCLO	27445	broad.mit.edu	36	7	82383294	82383294	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033026	exon7	c.C11944T	p.R3982C	.	.	.
PCLO	27445	broad.mit.edu	36	7	82418055	82418055	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033026	exon6	c.C9785A	p.S3262Y	.	.	.
PCLO	27445	broad.mit.edu	36	7	82418654	82418654	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033026	exon6	c.G9186T	p.Q3062H	.	.	.
PCLO	27445	broad.mit.edu	36	7	82419478	82419478	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033026	exon5	c.C8727T	p.V2909V	.	.	.
PCLO	27445	broad.mit.edu	36	7	82420630	82420630	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033026	exon5	c.A7575G	p.K2525K	.	.	.
PCLO	27445	broad.mit.edu	36	7	82421525	82421525	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033026	exon5	c.C6680A	p.S2227Y	.	.	.
PCLO	27445	broad.mit.edu	36	7	82422053	82422053	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033026	exon5	c.C6152A	p.S2051Y	.	.	.
PCLO	27445	broad.mit.edu	36	7	82422733	82422733	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033026	exon5	c.G5472T	p.K1824N	.	.	.
PCLO	27445	broad.mit.edu	36	7	82423208	82423208	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033026	exon5	c.G4997A	p.R1666Q	.	.	.
PCLO	27445	broad.mit.edu	36	7	82423842	82423842	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033026	exon5	c.T4363G	p.L1455V	.	.	.
PCLO	27445	broad.mit.edu	36	7	82424007	82424007	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033026	exon5	c.G4198T	p.E1400X	.	.	.
PCLO	27445	broad.mit.edu	36	7	82623484	82623484	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033026	exon2	c.G409T	p.E137X	.	.	.
SEMA3E	9723	broad.mit.edu	36	7	82835216	82835216	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012431	exon17	c.G1950A	p.G650G	.	.	.
SEMA3E	9723	broad.mit.edu	36	7	82854279	82854279	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012431	exon15	c.G1691A	p.R564Q	.	.	.
SEMA3E	9723	broad.mit.edu	36	7	82873224	82873224	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012431	exon8	c.G901T	p.G301X	.	.	.
SEMA3E	9723	broad.mit.edu	36	7	82933832	82933832	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012431	exon4	c.C358T	p.R120W	.	.	.
SEMA3A	10371	broad.mit.edu	36	7	83430479	83430479	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006080	exon16	c.G1838A	p.R613Q	.	.	.
SEMA3A	10371	broad.mit.edu	36	7	83577727	83577727	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006080	exon4	c.C448A	p.P150T	.	.	.
SEMA3A	10371	broad.mit.edu	36	7	83602075	83602075	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006080	exon2	c.G241A	p.D81N	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84466747	84466747	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152754	exon17	c.G2279A	p.R760Q	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84565161	84565161	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152754	exon2	c.T208G	p.F70V	.	.	.
KIAA1324L	222223	broad.mit.edu	36	7	86379456	86379456	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152748	exon14	c.A1536G	p.E512E	.	.	.
KIAA1324L	222223	broad.mit.edu	36	7	86382061	86382061	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152748	exon12	c.G1144T	p.E382X	.	.	.
KIAA1324L	222223	broad.mit.edu	36	7	86392895	86392895	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152748	exon9	c.T783C	p.C261C	.	.	.
DMTF1	9988	broad.mit.edu	36	7	86649542	86649542	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142327	exon10	c.C773A	p.S258Y	.	.	.
CROT	54677	broad.mit.edu	36	7	86859821	86859821	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021151	exon15	c.C1429T	p.R477C	.	.	.
CROT	54677	broad.mit.edu	36	7	86859990	86859990	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021151	exon16	c.C1513T	p.R505C	.	.	.
ABCB4	5244	broad.mit.edu	36	7	86873741	86873741	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018849	exon26	c.C3306T	p.L1102L	.	.	.
ABCB4	5244	broad.mit.edu	36	7	86898703	86898703	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018849	exon15	c.G1846A	p.E616K	.	.	.
ABCB4	5244	broad.mit.edu	36	7	86920213	86920213	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018849	exon6	c.C519A	p.L173L	.	.	.
ABCB1	5243	broad.mit.edu	36	7	86971694	86971694	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000927	exon29	c.A3644G	p.Q1215R	.	.	.
ABCB1	5243	broad.mit.edu	36	7	86988110	86988110	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000927	exon23	c.G2704T	p.E902X	.	.	.
ABCB1	5243	broad.mit.edu	36	7	87003793	87003793	+	Missense_Mutation	SNP	C	A	A	rs41305517	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000927	exon21	c.G2398T	p.D800Y	.	.	.
ABCB1	5243	broad.mit.edu	36	7	87021155	87021155	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000927	exon10	c.G857T	p.R286I	.	.	.
SLC25A40	55972	broad.mit.edu	36	7	87314290	87314290	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018843	exon8	c.C541T	p.R181X	.	.	.
DBF4	10926	broad.mit.edu	36	7	87363759	87363759	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006716	exon7	c.G632T	p.R211I	.	.	.
DBF4	10926	broad.mit.edu	36	7	87374531	87374531	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006716	exon12	c.C1142A	p.S381Y	.	.	.
DBF4	10926	broad.mit.edu	36	7	87375247	87375247	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006716	exon12	c.G1858T	p.D620Y	.	.	.
ADAM22	53616	broad.mit.edu	36	7	87601656	87601656	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021722	exon13	c.G1154T	p.R385I	.	.	.
ADAM22	53616	broad.mit.edu	36	7	87620560	87620560	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021722	exon21	c.G1770T	p.W590C	.	.	.
ADAM22	53616	broad.mit.edu	36	7	87623196	87623196	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021722	exon22	c.G1846A	p.E616K	.	.	.
SRI	6717	broad.mit.edu	36	7	87676632	87676632	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003130	exon6	c.G469A	p.D157N	.	.	.
STEAP4	79689	broad.mit.edu	36	7	87750007	87750007	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024636	exon3	c.G869A	p.R290Q	.	.	.
STEAP4	79689	broad.mit.edu	36	7	87750228	87750228	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024636	exon3	c.C648A	p.F216L	.	.	.
ZNF804B	219578	broad.mit.edu	36	7	88800794	88800794	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181646	exon4	c.C562T	p.R188X	.	.	.
ZNF804B	219578	broad.mit.edu	36	7	88800857	88800857	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181646	exon4	c.G625T	p.D209Y	.	.	.
ZNF804B	219578	broad.mit.edu	36	7	88804149	88804149	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181646	exon4	c.C3917A	p.S1306Y	.	.	.
STEAP1	26872	broad.mit.edu	36	7	89628303	89628303	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012449	exon3	c.C333A	p.I111I	.	.	.
STEAP2	261729	broad.mit.edu	36	7	89692618	89692618	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152999	exon2	c.G286T	p.E96X	.	.	.
C7orf63	79846	broad.mit.edu	36	7	89738803	89738803	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001160138	exon7	c.A506C	p.K169T	.	.	.
C7orf63	79846	broad.mit.edu	36	7	89739067	89739067	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001160138	exon8	c.C665A	p.A222D	.	.	.
C7orf63	79846	broad.mit.edu	36	7	89767270	89767270	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001160138	exon17	c.G1957T	p.E653X	.	.	.
C7orf63	79846	broad.mit.edu	36	7	89777406	89777406	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001160138	exon23	c.A2690C	p.K897T	.	.	.
GTPBP10	85865	broad.mit.edu	36	7	89852240	89852240	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033107	exon10	c.G1000A	p.E334K	.	.	.
CLDN12	9069	broad.mit.edu	36	7	89880528	89880528	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012129	exon3	c.C602A	p.S201Y	.	.	.
MTERF	7978	broad.mit.edu	36	7	91340951	91340951	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006980	exon3	c.G1093T	p.E365X	.	.	.
MTERF	7978	broad.mit.edu	36	7	91341266	91341266	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006980	exon3	c.C778T	p.R260W	.	.	.
MTERF	7978	broad.mit.edu	36	7	91341330	91341330	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006980	exon3	c.T714G	p.I238M	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91469334	91469334	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_147185	exon8	c.G2167T	p.E723X	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91547339	91547339	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_147185	exon31	c.C7932A	p.G2644G	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91564881	91564881	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_147185	exon42	c.C10420A	p.L3474I	.	.	.
ANKIB1	54467	broad.mit.edu	36	7	91774726	91774726	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019004	exon3	c.C306A	p.R102R	.	.	.
ANKIB1	54467	broad.mit.edu	36	7	91865861	91865861	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019004	exon20	c.C2932A	p.H978N	.	.	.
PEX1	5189	broad.mit.edu	36	7	91966976	91966976	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000466	exon16	c.G2696T	p.R899I	.	.	.
PEX1	5189	broad.mit.edu	36	7	91967051	91967051	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000466	exon16	c.G2621T	p.R874I	.	.	.
C7orf64	84060	broad.mit.edu	36	7	91999690	91999690	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032120	exon3	c.C339T	p.F113F	.	.	.
C7orf64	84060	broad.mit.edu	36	7	92002203	92002203	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032120	exon4	c.C1000T	p.R334W	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92569885	92569885	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193307	exon2	c.T3462G	p.D1154E	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92570428	92570428	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193307	exon2	c.C2919T	p.I973I	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92571242	92571242	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193307	exon2	c.C2105A	p.S702Y	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92571717	92571717	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001193307	exon2	c.C1630A	p.L544I	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92572046	92572046	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193307	exon2	c.T1301G	p.I434S	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92599392	92599392	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152703	exon5	c.C3829A	p.L1277I	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92599801	92599801	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152703	exon5	c.C3420T	p.N1140N	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92600426	92600426	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152703	exon5	c.T2795C	p.V932A	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92601945	92601945	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152703	exon5	c.C1276T	p.P426S	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92602017	92602017	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152703	exon5	c.C1204A	p.L402I	.	.	.
HEPACAM2	253012	broad.mit.edu	36	7	92663111	92663111	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198151	exon7	c.T1205G	p.F402C	.	.	.
CALCR	799	broad.mit.edu	36	7	92928133	92928133	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001742	exon8	c.C584A	p.S195Y	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93879342	93879342	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000089	exon24	c.C1377T	p.I459I	.	.	.
CASD1	64921	broad.mit.edu	36	7	94004975	94004975	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022900	exon9	c.C1099A	p.L367I	.	.	.
CASD1	64921	broad.mit.edu	36	7	94012802	94012802	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022900	exon12	c.C1486T	p.R496C	.	.	.
PPP1R9A	55607	broad.mit.edu	36	7	94377432	94377432	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001166163	exon1	c.G71A	p.R24Q	.	.	.
PON3	5446	broad.mit.edu	36	7	94830083	94830083	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000940	exon7	c.C702A	p.V234V	.	.	.
ASB4	51666	broad.mit.edu	36	7	94963278	94963278	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016116	exon2	c.C460A	p.L154I	.	.	.
PDK4	5166	broad.mit.edu	36	7	95060055	95060055	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002612	exon4	c.G482A	p.R161Q	.	.	.
DYNC1I1	1780	broad.mit.edu	36	7	95495451	95495451	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004411	exon11	c.G1049A	p.R350H	.	.	.
DYNC1I1	1780	broad.mit.edu	36	7	95495568	95495568	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004411	exon11	c.C1166T	p.T389M	.	.	.
SLC25A13	10165	broad.mit.edu	36	7	95637330	95637330	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014251	exon13	c.C1274T	p.S425L	.	.	.
SLC25A13	10165	broad.mit.edu	36	7	95658460	95658460	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014251	exon7	c.C651A	p.F217L	.	.	.
DLX5	1749	broad.mit.edu	36	7	96488170	96488170	+	Silent	SNP	G	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005221	exon3	c.C684G	p.G228G	.	.	.
DLX5	1749	broad.mit.edu	36	7	96489473	96489473	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005221	exon2	c.G500A	p.R167H	.	.	.
LMTK2	22853	broad.mit.edu	36	7	97638873	97638873	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014916	exon7	c.G742A	p.E248K	.	.	.
LMTK2	22853	broad.mit.edu	36	7	97661497	97661497	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014916	exon11	c.G3784A	p.E1262K	.	.	.
BAIAP2L1	55971	broad.mit.edu	36	7	97787357	97787357	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018842	exon5	c.G297A	p.E99E	.	.	.
TMEM130	222865	broad.mit.edu	36	7	98291658	98291658	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134451	exon3	c.G330A	p.A110A	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98386449	98386449	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003496	exon37	c.C5274A	p.I1758I	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98413881	98413881	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003496	exon55	c.C8422T	p.R2808X	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98414422	98414422	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003496	exon56	c.C8518T	p.R2840W	.	.	.
SMURF1	57154	broad.mit.edu	36	7	98481328	98481328	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020429	exon12	c.G1263A	p.P421P	.	.	.
SMURF1	57154	broad.mit.edu	36	7	98485267	98485267	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020429	exon10	c.G886T	p.D296Y	.	.	.
ZNF655	79027	broad.mit.edu	36	7	99009134	99009134	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001083956	exon4	c.G1572T	p.E524D	.	.	.
ZNF498	221785	broad.mit.edu	36	7	99064953	99064953	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145115	exon8	c.G1009A	p.E337K	.	.	.
CYP3A7	1551	broad.mit.edu	36	7	99157860	99157860	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000765	exon3	c.C213A	p.V71V	.	.	.
CYP3A7	1551	broad.mit.edu	36	7	99166686	99166686	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000765	exon2	c.T97G	p.F33V	.	.	.
CYP3A43	64816	broad.mit.edu	36	7	99285108	99285108	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_057096	exon7	c.C525A	p.F175L	.	.	.
CYP3A43	64816	broad.mit.edu	36	7	99297283	99297283	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_057096	exon11	c.G1138T	p.D380Y	.	.	.
OR2AE1	81392	broad.mit.edu	36	7	99311736	99311736	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005276	exon1	c.C857A	p.S286Y	.	.	.
TRIM4	89122	broad.mit.edu	36	7	99344346	99344346	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033017	exon4	c.G593T	p.R198I	.	.	.
AZGP1	563	broad.mit.edu	36	7	99403930	99403930	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001185	exon3	c.G397C	p.A133P	.	.	.
ZSCAN21	7589	broad.mit.edu	36	7	99499580	99499580	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145914	exon4	c.C826T	p.R276C	.	.	.
ZNF3	7551	broad.mit.edu	36	7	99507769	99507769	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032924	exon6	c.C274T	p.R92C	.	.	.
MCM7	4176	broad.mit.edu	36	7	99528620	99528620	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182776	exon14	c.C1503A	p.F501L	.	.	.
MCM7	4176	broad.mit.edu	36	7	99533291	99533291	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182776	exon8	c.C471T	p.Y157Y	.	.	.
STAG3	10734	broad.mit.edu	36	7	99634451	99634451	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012447	exon14	c.C1402T	p.R468C	.	.	.
STAG3	10734	broad.mit.edu	36	7	99635132	99635132	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012447	exon16	c.G1606T	p.E536X	.	.	.
STAG3	10734	broad.mit.edu	36	7	99639641	99639641	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012447	exon26	c.G2762A	p.R921Q	.	.	.
STAG3	10734	broad.mit.edu	36	7	99647379	99647379	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012447	exon32	c.G3541A	p.E1181K	.	.	.
PILRB	29990	broad.mit.edu	36	7	99795029	99795029	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178238	exon3	c.C588T	p.V196V	.	.	.
PILRA	29992	broad.mit.edu	36	7	99825548	99825548	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013439	exon3	c.C556T	p.R186C	.	.	.
ZCWPW1	55063	broad.mit.edu	36	7	99836751	99836751	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017984	exon18	c.G1769T	p.R590I	.	.	.
MEPCE	56257	broad.mit.edu	36	7	99868683	99868683	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001194991	exon3	c.G470T	p.R157I	.	.	.
AGFG2	3268	broad.mit.edu	36	7	99985966	99985966	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006076	exon3	c.G327T	p.K109N	.	.	.
ZNF337	26152	broad.mit.edu	36	20	25603992	25603994	+	In_Frame_Del	DEL	GAG	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015655	exon5	c.1930_1932del	p.644_644del	.	.	.
SLC23A2	9962	broad.mit.edu	36	20	4828249	4828249	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203327	exon6	c.434delT	p.F145fs	.	.	.
PSMF1	9491	broad.mit.edu	36	20	1054243	1054243	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006814	exon2	c.C232T	p.L78F	.	.	.
C20orf94	128710	broad.mit.edu	36	20	10551735	10551735	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001009608	exon8	c.C935A	p.S312Y	.	.	.
JAG1	182	broad.mit.edu	36	20	10577720	10577720	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000214	exon11	c.G1384A	p.A462T	.	.	.
SNPH	9751	broad.mit.edu	36	20	1233732	1233732	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014723	exon6	c.G519A	p.Q173Q	.	.	.
SPTLC3	55304	broad.mit.edu	36	20	13088674	13088674	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018327	exon11	c.G1440T	p.E480D	.	.	.
ISM1	140862	broad.mit.edu	36	20	13227839	13227839	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080826	exon6	c.G1128A	p.E376E	.	.	.
SEL1L2	80343	broad.mit.edu	36	20	13787926	13787926	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025229	exon18	c.C1800T	p.H600H	.	.	.
SEL1L2	80343	broad.mit.edu	36	20	13794146	13794146	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025229	exon16	c.C1419A	p.V473V	.	.	.
SEL1L2	80343	broad.mit.edu	36	20	13919174	13919174	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025229	exon1	c.C7T	p.P3S	.	.	.
SIRPB2	284759	broad.mit.edu	36	20	1408486	1408486	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001122962	exon2	c.G310T	p.E104X	.	.	.
SIRPB2	284759	broad.mit.edu	36	20	1408689	1408689	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001122962	exon2	c.G107T	p.R36M	.	.	.
SIRPB1	10326	broad.mit.edu	36	20	1500399	1500399	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006065	exon3	c.C718T	p.R240C	.	.	.
SIRPG	55423	broad.mit.edu	36	20	1577888	1577888	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039508	exon2	c.A240C	p.Q80H	.	.	.
SIRPG	55423	broad.mit.edu	36	20	1586306	1586306	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039508	exon1	c.C55A	p.L19I	.	.	.
KIF16B	55614	broad.mit.edu	36	20	16441483	16441483	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024704	exon5	c.G434A	p.R145Q	.	.	.
KIF16B	55614	broad.mit.edu	36	20	16454742	16454742	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024704	exon3	c.G226T	p.E76X	.	.	.
PCSK2	5126	broad.mit.edu	36	20	17393972	17393972	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002594	exon11	c.C1204A	p.L402M	.	.	.
BFSP1	631	broad.mit.edu	36	20	17422974	17422974	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001161705	exon8	c.G1368T	p.E456D	.	.	.
BFSP1	631	broad.mit.edu	36	20	17453516	17453516	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001161705	exon2	c.G40T	p.E14X	.	.	.
DSTN	11034	broad.mit.edu	36	20	17529440	17529440	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006870	exon2	c.C61T	p.R21C	.	.	.
C20orf72	92667	broad.mit.edu	36	20	17898834	17898834	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052865	exon2	c.A332C	p.K111T	.	.	.
C20orf72	92667	broad.mit.edu	36	20	17918589	17918589	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052865	exon5	c.G872A	p.C291Y	.	.	.
OVOL2	58495	broad.mit.edu	36	20	17953407	17953407	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021220	exon4	c.A701G	p.N234S	.	.	.
CSRP2BP	57325	broad.mit.edu	36	20	18091396	18091396	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020536	exon6	c.G1478A	p.R493H	.	.	.
C20orf12	55184	broad.mit.edu	36	20	18344009	18344009	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099407	exon11	c.C1039A	p.L347I	.	.	.
SIRPA	140885	broad.mit.edu	36	20	1853475	1853475	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040023	exon5	c.G1153A	p.A385T	.	.	.
DTD1	92675	broad.mit.edu	36	20	18556841	18556841	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080820	exon4	c.G441A	p.S147S	.	.	.
SLC24A3	57419	broad.mit.edu	36	20	19613962	19613962	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020689	exon12	c.C1281T	p.D427D	.	.	.
RIN2	54453	broad.mit.edu	36	20	19903749	19903749	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018993	exon7	c.G1080A	p.R360R	.	.	.
CRNKL1	51340	broad.mit.edu	36	20	19966118	19966118	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016652	exon14	c.G2228A	p.R743Q	.	.	.
C20orf26	26074	broad.mit.edu	36	20	20226871	20226871	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015585	exon25	c.G3263A	p.R1088Q	.	.	.
RALGAPA2	57186	broad.mit.edu	36	20	20423785	20423785	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020343	exon36	c.C5343A	p.F1781L	.	.	.
RALGAPA2	57186	broad.mit.edu	36	20	20432032	20432032	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020343	exon35	c.G5171A	p.R1724Q	.	.	.
RALGAPA2	57186	broad.mit.edu	36	20	20533835	20533835	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020343	exon15	c.G2022T	p.K674N	.	.	.
PLK1S1	55857	broad.mit.edu	36	20	21090892	21090892	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001163022	exon4	c.G477T	p.K159N	.	.	.
PLK1S1	55857	broad.mit.edu	36	20	21134155	21134155	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001163022	exon6	c.G1069A	p.V357I	.	.	.
XRN2	22803	broad.mit.edu	36	20	21262218	21262218	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012255	exon10	c.G895T	p.G299X	.	.	.
XRN2	22803	broad.mit.edu	36	20	21315627	21315627	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012255	exon29	c.G2770T	p.D924Y	.	.	.
TGM3	7053	broad.mit.edu	36	20	2238453	2238453	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003245	exon2	c.G158T	p.R53I	.	.	.
CD93	22918	broad.mit.edu	36	20	23013795	23013795	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012072	exon1	c.C1035T	p.D345D	.	.	.
CSTL1	128817	broad.mit.edu	36	20	23372576	23372576	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138283	exon3	c.G225A	p.T75T	.	.	.
CST9L	128821	broad.mit.edu	36	20	23496861	23496861	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080610	exon1	c.C227A	p.S76Y	.	.	.
CST3	1471	broad.mit.edu	36	20	23564002	23564002	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000099	exon2	c.C246T	p.I82I	.	.	.
SNRPB	6628	broad.mit.edu	36	20	2396314	2396314	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003091	exon2	c.A94G	p.K32E	.	.	.
VSX1	30813	broad.mit.edu	36	20	25004898	25004898	+	Nonstop_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014588	exon5	c.G1097T	p.X366L	.	.	.
ENTPD6	955	broad.mit.edu	36	20	25149875	25149875	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001114089	exon10	c.T900C	p.D300D	.	.	.
NINL	22981	broad.mit.edu	36	20	25391036	25391036	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025176	exon20	c.C3565T	p.R1189C	.	.	.
NINL	22981	broad.mit.edu	36	20	25405525	25405525	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025176	exon17	c.C2402T	p.S801L	.	.	.
NINL	22981	broad.mit.edu	36	20	25410682	25410682	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025176	exon14	c.C1732T	p.R578W	.	.	.
TMC2	117532	broad.mit.edu	36	20	2544830	2544830	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080751	exon15	c.C1920A	p.I640I	.	.	.
NOP56	10528	broad.mit.edu	36	20	2585782	2585782	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006392	exon11	c.G1337A	p.R446H	.	.	.
NOP56	10528	broad.mit.edu	36	20	2586841	2586841	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006392	exon12	c.C1686A	p.F562L	.	.	.
NOP56	10528	broad.mit.edu	36	20	2586897	2586897	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006392	exon12	c.C1742T	p.S581F	.	.	.
CPXM1	56265	broad.mit.edu	36	20	2723011	2723011	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001184699	exon14	c.G1808A	p.G603D	.	.	.
VPS16	64601	broad.mit.edu	36	20	2789680	2789680	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080413	exon7	c.G695A	p.R232Q	.	.	.
DEFB116	245930	broad.mit.edu	36	20	29354729	29354729	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037731	exon2	c.G256A	p.D86N	.	.	.
REM1	28954	broad.mit.edu	36	20	29533804	29533804	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014012	exon4	c.C477T	p.I159I	.	.	.
REM1	28954	broad.mit.edu	36	20	29533865	29533865	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014012	exon4	c.C538T	p.R180W	.	.	.
COX4I2	84701	broad.mit.edu	36	20	29694966	29694966	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032609	exon4	c.G346A	p.A116T	.	.	.
TPX2	22974	broad.mit.edu	36	20	29811588	29811588	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012112	exon4	c.A174T	p.K58N	.	.	.
TTLL9	164395	broad.mit.edu	36	20	29922650	29922650	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008409	exon2	c.G60T	p.K20N	.	.	.
TTLL9	164395	broad.mit.edu	36	20	29986308	29986308	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008409	exon12	c.C960T	p.F320F	.	.	.
TTLL9	164395	broad.mit.edu	36	20	29990708	29990708	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008409	exon14	c.C1221A	p.N407K	.	.	.
TM9SF4	9777	broad.mit.edu	36	20	30209317	30209317	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014742	exon14	c.C1389T	p.L463L	.	.	.
ASXL1	171023	broad.mit.edu	36	20	30479811	30479811	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015338	exon5	c.G396A	p.S132S	.	.	.
UBOX5	22888	broad.mit.edu	36	20	3050194	3050194	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014948	exon3	c.G1091T	p.R364M	.	.	.
UBOX5	22888	broad.mit.edu	36	20	3050535	3050535	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014948	exon3	c.G750T	p.Q250H	.	.	.
UBOX5	22888	broad.mit.edu	36	20	3050794	3050794	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014948	exon3	c.C491A	p.A164D	.	.	.
UBOX5	22888	broad.mit.edu	36	20	3051974	3051974	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014948	exon2	c.G38T	p.R13I	.	.	.
DNMT3B	1789	broad.mit.edu	36	20	30831887	30831887	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175848	exon2	c.G97A	p.D33N	.	.	.
DNMT3B	1789	broad.mit.edu	36	20	30843150	30843150	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175848	exon8	c.G896A	p.R299Q	.	.	.
DNMT3B	1789	broad.mit.edu	36	20	30848306	30848306	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175848	exon12	c.C1287A	p.L429L	.	.	.
BPIL3	128859	broad.mit.edu	36	20	31083130	31083130	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_174897	exon1	c.T16C	p.C6R	.	.	.
C20orf185	359710	broad.mit.edu	36	20	31120309	31120309	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182658	exon10	c.T1018C	p.F340L	.	.	.
C20orf71	128861	broad.mit.edu	36	20	31269082	31269082	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178466	exon1	c.C79T	p.P27S	.	.	.
PLUNC	51297	broad.mit.edu	36	20	31292900	31292900	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016583	exon6	c.C630A	p.I210I	.	.	.
SNTA1	6640	broad.mit.edu	36	20	31464240	31464240	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003098	exon4	c.G711T	p.E237D	.	.	.
SLC4A11	83959	broad.mit.edu	36	20	3163517	3163517	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001174090	exon3	c.G241T	p.D81Y	.	.	.
SLC4A11	83959	broad.mit.edu	36	20	3166200	3166200	+	Silent	SNP	G	A	A	rs35732230	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001174090	exon2	c.C207T	p.F69F	.	.	.
TRIB3	57761	broad.mit.edu	36	20	316760	316760	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021158	exon2	c.C106T	p.R36X	.	.	.
NECAB3	63941	broad.mit.edu	36	20	31722175	31722175	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031232	exon3	c.G239T	p.S80I	.	.	.
C20orf194	25943	broad.mit.edu	36	20	3243716	3243716	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001009984	exon20	c.C1642A	p.L548I	.	.	.
C20orf194	25943	broad.mit.edu	36	20	3269279	3269279	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001009984	exon10	c.C853T	p.R285W	.	.	.
NCOA6	23054	broad.mit.edu	36	20	32792215	32792215	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014071	exon11	c.A5506G	p.T1836A	.	.	.
NCOA6	23054	broad.mit.edu	36	20	32792595	32792595	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014071	exon11	c.C5126A	p.S1709Y	.	.	.
NCOA6	23054	broad.mit.edu	36	20	32793097	32793097	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014071	exon11	c.G4624T	p.E1542X	.	.	.
NCOA6	23054	broad.mit.edu	36	20	32793801	32793801	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014071	exon11	c.C3920A	p.S1307Y	.	.	.
NCOA6	23054	broad.mit.edu	36	20	32794364	32794364	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014071	exon11	c.G3357T	p.Q1119H	.	.	.
GGT7	2686	broad.mit.edu	36	20	32912994	32912994	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178026	exon4	c.G590A	p.R197Q	.	.	.
ACSS2	55902	broad.mit.edu	36	20	32973060	32973060	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018677	exon12	c.C1463A	p.S488Y	.	.	.
MYH7B	57644	broad.mit.edu	36	20	33041359	33041359	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020884	exon20	c.C1869T	p.F623F	.	.	.
MYH7B	57644	broad.mit.edu	36	20	33041746	33041746	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020884	exon22	c.C2075T	p.S692L	.	.	.
TRPC4AP	26133	broad.mit.edu	36	20	33072720	33072720	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199368	exon9	c.G1128A	p.E376E	.	.	.
TRPC4AP	26133	broad.mit.edu	36	20	33120810	33120810	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199368	exon3	c.G364T	p.E122X	.	.	.
GDF5	8200	broad.mit.edu	36	20	33485526	33485526	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000557	exon2	c.G1101T	p.K367N	.	.	.
CEP250	11190	broad.mit.edu	36	20	33529305	33529305	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007186	exon17	c.G2059T	p.E687X	.	.	.
ERGIC3	51614	broad.mit.edu	36	20	33593556	33593556	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198398	exon2	c.G159T	p.E53D	.	.	.
RBM12	10137	broad.mit.edu	36	20	33705107	33705107	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152838	exon3	c.C1552T	p.R518X	.	.	.
RBM39	9584	broad.mit.edu	36	20	33765712	33765712	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004902	exon11	c.A905G	p.E302G	.	.	.
RBM39	9584	broad.mit.edu	36	20	33790317	33790317	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004902	exon3	c.G88T	p.E30X	.	.	.
PHF20	51230	broad.mit.edu	36	20	33923154	33923154	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016436	exon9	c.C1271T	p.S424L	.	.	.
PHF20	51230	broad.mit.edu	36	20	33979193	33979193	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016436	exon14	c.T2082G	p.C694W	.	.	.
EPB41L1	2036	broad.mit.edu	36	20	34229359	34229359	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012156	exon4	c.C414T	p.F138F	.	.	.
NDRG3	57446	broad.mit.edu	36	20	34722199	34722199	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032013	exon13	c.C813T	p.V271V	.	.	.
SAMHD1	25939	broad.mit.edu	36	20	34978814	34978814	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015474	exon8	c.C905A	p.S302Y	.	.	.
ATRN	8455	broad.mit.edu	36	20	3501521	3501521	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139322	exon12	c.C2015T	p.S672L	.	.	.
ATRN	8455	broad.mit.edu	36	20	3507320	3507320	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139322	exon15	c.C2445A	p.F815L	.	.	.
ATRN	8455	broad.mit.edu	36	20	3507394	3507394	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139322	exon15	c.G2519A	p.R840Q	.	.	.
RBL1	5933	broad.mit.edu	36	20	35080179	35080179	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002895	exon19	c.G2639T	p.R880I	.	.	.
RBL1	5933	broad.mit.edu	36	20	35084576	35084576	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002895	exon17	c.G2450A	p.R817Q	.	.	.
C20orf132	140699	broad.mit.edu	36	20	35174206	35174206	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152503	exon20	c.G2750T	p.R917I	.	.	.
RPN2	6185	broad.mit.edu	36	20	35290438	35290438	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002951	exon12	c.C1371T	p.N457N	.	.	.
TGM2	7052	broad.mit.edu	36	20	36194285	36194285	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004613	exon11	c.G1647T	p.E549D	.	.	.
SIGLEC1	6614	broad.mit.edu	36	20	3630019	3630019	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023068	exon6	c.G1498A	p.A500T	.	.	.
KIAA1755	85449	broad.mit.edu	36	20	36303112	36303112	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001029864	exon3	c.C835A	p.L279I	.	.	.
BPI	671	broad.mit.edu	36	20	36366066	36366066	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001725	exon1	c.G39A	p.P13P	.	.	.
BPI	671	broad.mit.edu	36	20	36388122	36388122	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001725	exon10	c.C1047A	p.V349V	.	.	.
BPI	671	broad.mit.edu	36	20	36397415	36397415	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001725	exon14	c.G1350T	p.E450D	.	.	.
RALGAPB	57148	broad.mit.edu	36	20	36578385	36578385	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020336	exon7	c.C1009T	p.R337C	.	.	.
SLC32A1	140679	broad.mit.edu	36	20	36789551	36789551	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080552	exon2	c.G433T	p.G145C	.	.	.
SLC32A1	140679	broad.mit.edu	36	20	36789834	36789834	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080552	exon2	c.C716T	p.S239L	.	.	.
PPP1R16B	26051	broad.mit.edu	36	20	36980326	36980326	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172735	exon10	c.A1181G	p.Q394R	.	.	.
FAM83D	81610	broad.mit.edu	36	20	37010008	37010008	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030919	exon3	c.G817A	p.E273K	.	.	.
DHX35	60625	broad.mit.edu	36	20	37065815	37065815	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190809	exon10	c.G769T	p.E257X	.	.	.
MAVS	57506	broad.mit.edu	36	20	3792907	3792907	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020746	exon6	c.G630A	p.A210A	.	.	.
PANK2	80025	broad.mit.edu	36	20	3836859	3836859	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153638	exon2	c.G915A	p.S305S	.	.	.
TOP1	7150	broad.mit.edu	36	20	39146539	39146539	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003286	exon8	c.G531T	p.K177N	.	.	.
TOP1	7150	broad.mit.edu	36	20	39174979	39174979	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003286	exon14	c.G1452T	p.K484N	.	.	.
PLCG1	5335	broad.mit.edu	36	20	39228805	39228805	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002660	exon19	c.C2193T	p.F731F	.	.	.
ZHX3	23051	broad.mit.edu	36	20	39265008	39265008	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015035	exon3	c.G1963T	p.E655X	.	.	.
CHD6	84181	broad.mit.edu	36	20	39555656	39555656	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032221	exon10	c.A1250G	p.D417G	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40261323	40261323	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133170	exon17	c.C2519T	p.S840F	.	.	.
SMOX	54498	broad.mit.edu	36	20	4110483	4110483	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175840	exon4	c.G469A	p.D157N	.	.	.
SRSF6	6431	broad.mit.edu	36	20	41522779	41522779	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006275	exon6	c.C697T	p.R233X	.	.	.
SGK2	10110	broad.mit.edu	36	20	41633093	41633093	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170693	exon8	c.G489T	p.E163D	.	.	.
MYBL2	4605	broad.mit.edu	36	20	41761899	41761899	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002466	exon7	c.C752T	p.S251L	.	.	.
GTSF1L	149699	broad.mit.edu	36	20	41788440	41788440	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176791	exon1	c.C309A	p.I103I	.	.	.
JPH2	57158	broad.mit.edu	36	20	42222051	42222051	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020433	exon2	c.G790A	p.A264T	.	.	.
GDAP1L1	78997	broad.mit.edu	36	20	42326507	42326507	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024034	exon5	c.C654A	p.I218I	.	.	.
HNF4A	3172	broad.mit.edu	36	20	42469463	42469463	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001030003	exon3	c.G253T	p.D85Y	.	.	.
SERINC3	10955	broad.mit.edu	36	20	42583983	42583983	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198941	exon1	c.C24A	p.F8L	.	.	.
ADA	100	broad.mit.edu	36	20	42684644	42684644	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000022	exon9	c.C844T	p.R282W	.	.	.
RIMS4	140730	broad.mit.edu	36	20	42819027	42819027	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182970	exon5	c.G517A	p.A173T	.	.	.
TOMM34	10953	broad.mit.edu	36	20	43013950	43013950	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006809	exon4	c.C488T	p.S163L	.	.	.
PI3	5266	broad.mit.edu	36	20	43238030	43238030	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002638	exon2	c.T194C	p.V65A	.	.	.
PIGT	51604	broad.mit.edu	36	20	43482727	43482727	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184730	exon6	c.G707T	p.W236L	.	.	.
WFDC10A	140832	broad.mit.edu	36	20	43691929	43691929	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080753	exon1	c.A63G	p.G21G	.	.	.
WFDC3	140686	broad.mit.edu	36	20	43851956	43851956	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080614	exon2	c.A66G	p.I22M	.	.	.
PLTP	5360	broad.mit.edu	36	20	43968388	43968388	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006227	exon8	c.G631A	p.E211K	.	.	.
PLTP	5360	broad.mit.edu	36	20	43973274	43973274	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006227	exon3	c.C124A	p.L42M	.	.	.
PLTP	5360	broad.mit.edu	36	20	43973487	43973487	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006227	exon2	c.C12T	p.F4F	.	.	.
PCIF1	63935	broad.mit.edu	36	20	44002928	44002928	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022104	exon6	c.A461C	p.K154T	.	.	.
PCIF1	63935	broad.mit.edu	36	20	44005147	44005147	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022104	exon8	c.T678C	p.I226I	.	.	.
MMP9	4318	broad.mit.edu	36	20	44072587	44072587	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004994	exon3	c.G430A	p.A144T	.	.	.
MMP9	4318	broad.mit.edu	36	20	44075823	44075823	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004994	exon10	c.G1731T	p.K577N	.	.	.
SLC12A5	57468	broad.mit.edu	36	20	44105288	44105288	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020708	exon9	c.G1156A	p.D386N	.	.	.
CD40	958	broad.mit.edu	36	20	44185243	44185243	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001250	exon5	c.G475A	p.E159K	.	.	.
SLC13A3	64849	broad.mit.edu	36	20	44650179	44650179	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193339	exon7	c.C897T	p.F299F	.	.	.
SLC13A3	64849	broad.mit.edu	36	20	44672597	44672597	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193339	exon3	c.G436A	p.A146T	.	.	.
EYA2	2139	broad.mit.edu	36	20	45066988	45066988	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_172110	exon4	c.A156G	p.R52R	.	.	.
EYA2	2139	broad.mit.edu	36	20	45151346	45151346	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172110	exon8	c.G723A	p.P241P	.	.	.
EYA2	2139	broad.mit.edu	36	20	45205123	45205123	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172110	exon10	c.C907T	p.R303C	.	.	.
ZMYND8	23613	broad.mit.edu	36	20	45352414	45352414	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012408	exon7	c.G672T	p.K224N	.	.	.
NCOA3	8202	broad.mit.edu	36	20	45686199	45686199	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001174087	exon4	c.A221C	p.E74A	.	.	.
NCOA3	8202	broad.mit.edu	36	20	45689288	45689288	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001174087	exon6	c.G493T	p.D165Y	.	.	.
NCOA3	8202	broad.mit.edu	36	20	45689804	45689804	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174087	exon7	c.G625A	p.E209K	.	.	.
NCOA3	8202	broad.mit.edu	36	20	45695680	45695680	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001174087	exon9	c.G857A	p.R286K	.	.	.
NCOA3	8202	broad.mit.edu	36	20	45709341	45709341	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001174087	exon18	c.G3370T	p.G1124X	.	.	.
PRNP	5621	broad.mit.edu	36	20	4627943	4627943	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_183079	exon2	c.C77T	p.P26L	.	.	.
PREX1	57580	broad.mit.edu	36	20	46682445	46682445	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020820	exon34	c.G4407A	p.T1469T	.	.	.
PREX1	57580	broad.mit.edu	36	20	46692152	46692152	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020820	exon29	c.G3736A	p.E1246K	.	.	.
PREX1	57580	broad.mit.edu	36	20	46709915	46709915	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020820	exon16	c.G1830A	p.Q610Q	.	.	.
ARFGEF2	10564	broad.mit.edu	36	20	47023152	47023152	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006420	exon12	c.T1589C	p.F530S	.	.	.
ARFGEF2	10564	broad.mit.edu	36	20	47041073	47041074	+	Missense_Mutation	DNP	CG	TA	TA	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006420	exon21	c.2904_2905TA	.	.	.	.
ARFGEF2	10564	broad.mit.edu	36	20	47078551	47078551	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006420	exon37	c.C5002T	p.R1668X	.	.	.
RASSF2	9770	broad.mit.edu	36	20	4712984	4712984	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170774	exon11	c.A916G	p.T306A	.	.	.
RASSF2	9770	broad.mit.edu	36	20	4714954	4714954	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170774	exon10	c.C834T	p.F278F	.	.	.
STAU1	6780	broad.mit.edu	36	20	47215990	47215990	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017453	exon3	c.A156C	p.Q52H	.	.	.
ZNFX1	57169	broad.mit.edu	36	20	47297565	47297565	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021035	exon14	c.C5403A	p.F1801L	.	.	.
ZNFX1	57169	broad.mit.edu	36	20	47305840	47305840	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021035	exon9	c.C2716T	p.R906C	.	.	.
ZNFX1	57169	broad.mit.edu	36	20	47314747	47314747	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021035	exon5	c.C2064T	p.I688I	.	.	.
ZNFX1	57169	broad.mit.edu	36	20	47316093	47316093	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021035	exon4	c.A1988G	p.D663G	.	.	.
ZNFX1	57169	broad.mit.edu	36	20	47321182	47321182	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021035	exon3	c.C574T	p.R192W	.	.	.
KCNB1	3745	broad.mit.edu	36	20	47423548	47423548	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004975	exon2	c.C1956A	p.F652L	.	.	.
SLC9A8	23315	broad.mit.edu	36	20	47889534	47889534	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015266	exon4	c.G339A	p.A113A	.	.	.
SPATA2	9825	broad.mit.edu	36	20	47956613	47956613	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135773	exon3	c.C513T	p.V171V	.	.	.
TMEM189-UBE2V1	387522	broad.mit.edu	36	20	48134083	48134083	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021988	exon3	c.C356A	p.S119Y	.	.	.
PTPN1	5770	broad.mit.edu	36	20	48624505	48624505	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002827	exon5	c.G399T	p.M133I	.	.	.
ADNP	23394	broad.mit.edu	36	20	48941668	48941668	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015339	exon5	c.C2990A	p.S997Y	.	.	.
ADNP	23394	broad.mit.edu	36	20	48941949	48941949	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015339	exon5	c.C2709A	p.I903I	.	.	.
ADNP	23394	broad.mit.edu	36	20	48943130	48943130	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015339	exon5	c.C1528A	p.H510N	.	.	.
ADNP	23394	broad.mit.edu	36	20	48943263	48943263	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015339	exon5	c.C1395T	p.F465F	.	.	.
KCNG1	3755	broad.mit.edu	36	20	49059815	49059815	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002237	exon2	c.C468T	p.I156I	.	.	.
NFATC2	4773	broad.mit.edu	36	20	49482222	49482222	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012340	exon9	c.C2511T	p.F837F	.	.	.
ATP9A	10079	broad.mit.edu	36	20	49651200	49651200	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006045	exon28	c.G3101A	p.R1034Q	.	.	.
ATP9A	10079	broad.mit.edu	36	20	49726085	49726085	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006045	exon10	c.G869A	p.R290Q	.	.	.
ZFP64	55734	broad.mit.edu	36	20	50202641	50202641	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018197	exon6	c.C1497A	p.I499I	.	.	.
ZNF217	7764	broad.mit.edu	36	20	51626420	51626420	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006526	exon3	c.G2290T	p.D764Y	.	.	.
ZNF217	7764	broad.mit.edu	36	20	51631422	51631422	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006526	exon1	c.G1351A	p.E451K	.	.	.
CYP24A1	1591	broad.mit.edu	36	20	52208941	52208941	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000782	exon8	c.T1119G	p.N373K	.	.	.
PROKR2	128674	broad.mit.edu	36	20	5230738	5230738	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144773	exon2	c.G1103T	p.R368I	.	.	.
PROKR2	128674	broad.mit.edu	36	20	5231115	5231115	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144773	exon2	c.C726A	p.C242X	.	.	.
CASS4	57091	broad.mit.edu	36	20	54461344	54461344	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020356	exon5	c.C1705A	p.L569I	.	.	.
GPCPD1	56261	broad.mit.edu	36	20	5487375	5487375	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019593	exon18	c.G1623T	p.R541R	.	.	.
SPO11	23626	broad.mit.edu	36	20	55343915	55343915	+	Missense_Mutation	SNP	C	T	T	rs28368082	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012444	exon7	c.C631T	p.R211W	.	.	.
RAE1	8480	broad.mit.edu	36	20	55382157	55382157	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003610	exon10	c.C781T	p.R261X	.	.	.
RBM38	55544	broad.mit.edu	36	20	55416263	55416263	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017495	exon4	c.C674T	p.S225L	.	.	.
PCK1	5105	broad.mit.edu	36	20	55571558	55571558	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002591	exon5	c.G679T	p.E227X	.	.	.
ZNF831	128611	broad.mit.edu	36	20	57199664	57199664	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178457	exon1	c.G195A	p.T65T	.	.	.
ZNF831	128611	broad.mit.edu	36	20	57201353	57201353	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178457	exon1	c.C1884A	p.F628L	.	.	.
ZNF831	128611	broad.mit.edu	36	20	57263068	57263068	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178457	exon5	c.G4909T	p.E1637X	.	.	.
EDN3	1908	broad.mit.edu	36	20	57310011	57310011	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207033	exon2	c.G204A	p.P68P	.	.	.
PHACTR3	116154	broad.mit.edu	36	20	57814528	57814528	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080672	exon8	c.C1212T	p.A404A	.	.	.
PHACTR3	116154	broad.mit.edu	36	20	57849896	57849896	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080672	exon11	c.C1498T	p.R500X	.	.	.
PHACTR3	116154	broad.mit.edu	36	20	57853654	57853654	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080672	exon12	c.G1603T	p.E535X	.	.	.
SYCP2	10388	broad.mit.edu	36	20	57876252	57876252	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014258	exon38	c.C4034A	p.P1345H	.	.	.
SYCP2	10388	broad.mit.edu	36	20	57910131	57910131	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014258	exon15	c.T1163G	p.F388C	.	.	.
C20orf196	149840	broad.mit.edu	36	20	5792088	5792088	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152504	exon3	c.G597A	p.Q199Q	.	.	.
C20orf177	63939	broad.mit.edu	36	20	57953159	57953159	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190826	exon5	c.G766T	p.E256X	.	.	.
C20orf177	63939	broad.mit.edu	36	20	57953278	57953278	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190826	exon5	c.G885T	p.K295N	.	.	.
C20orf177	63939	broad.mit.edu	36	20	57953494	57953494	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001190826	exon5	c.G1101T	p.E367D	.	.	.
MCM8	84515	broad.mit.edu	36	20	5914767	5914767	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032485	exon16	c.G2153A	p.R718H	.	.	.
CDH4	1002	broad.mit.edu	36	20	59936740	59936740	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001794	exon12	c.C1869T	p.C623C	.	.	.
CDH4	1002	broad.mit.edu	36	20	59938128	59938128	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001794	exon13	c.T2072G	p.I691S	.	.	.
CDH4	1002	broad.mit.edu	36	20	59938236	59938236	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001794	exon13	c.C2180T	p.A727V	.	.	.
PSMA7	5688	broad.mit.edu	36	20	60146660	60146660	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002792	exon5	c.G553T	p.D185Y	.	.	.
OSBPL2	9885	broad.mit.edu	36	20	60297707	60297707	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014835	exon12	c.G1139A	p.G380D	.	.	.
TCFL5	10732	broad.mit.edu	36	20	60943836	60943836	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006602	exon6	c.A1439G	p.D480G	.	.	.
DIDO1	11083	broad.mit.edu	36	20	60994707	60994707	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001193370	exon13	c.C3154T	p.R1052X	.	.	.
SLC17A9	63910	broad.mit.edu	36	20	61066953	61066953	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022082	exon9	c.A935C	p.K312T	.	.	.
YTHDF1	54915	broad.mit.edu	36	20	61305224	61305224	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017798	exon4	c.C513T	p.S171S	.	.	.
YTHDF1	54915	broad.mit.edu	36	20	61305353	61305353	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017798	exon4	c.G384A	p.A128A	.	.	.
ZGPAT	84619	broad.mit.edu	36	20	61810952	61810952	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181485	exon2	c.G576A	p.E192E	.	.	.
ZBTB46	140685	broad.mit.edu	36	20	61892522	61892522	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025224	exon2	c.G33A	p.T11T	.	.	.
ZBTB46	140685	broad.mit.edu	36	20	61892544	61892544	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025224	exon2	c.G11A	p.R4Q	.	.	.
PRPF6	24148	broad.mit.edu	36	20	62101529	62101529	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012469	exon8	c.C996A	p.I332I	.	.	.
TCEA2	6919	broad.mit.edu	36	20	62173713	62173713	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198723	exon10	c.G785A	p.C262Y	.	.	.
MYT1	4661	broad.mit.edu	36	20	62309893	62309893	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004535	exon7	c.G900T	p.E300D	.	.	.
MYT1	4661	broad.mit.edu	36	20	62319054	62319054	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004535	exon11	c.G1822A	p.E608K	.	.	.
BMP2	650	broad.mit.edu	36	20	6707694	6707694	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001200	exon3	c.G1149T	p.K383N	.	.	.
HAO1	54363	broad.mit.edu	36	20	7814189	7814189	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017545	exon7	c.C1021A	p.R341R	.	.	.
ANGPT4	51378	broad.mit.edu	36	20	801726	801726	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015985	exon9	c.C1389T	p.N463N	.	.	.
ANGPT4	51378	broad.mit.edu	36	20	818988	818988	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015985	exon2	c.C333A	p.I111I	.	.	.
PLCB1	23236	broad.mit.edu	36	20	8667982	8667982	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182734	exon21	c.C2283A	p.I761I	.	.	.
PLCB1	23236	broad.mit.edu	36	20	8670118	8670118	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182734	exon23	c.C2421T	p.I807I	.	.	.
PLCB4	5332	broad.mit.edu	36	20	9349961	9349961	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000933	exon23	c.C2136A	p.F712L	.	.	.
C20orf103	24141	broad.mit.edu	36	20	9446747	9446747	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199897	exon4	c.C404T	p.S135F	.	.	.
PAK7	57144	broad.mit.edu	36	20	9509309	9509309	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_177990	exon4	c.C473T	p.P158L	.	.	.
PAK7	57144	broad.mit.edu	36	20	9509418	9509418	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_177990	exon4	c.G364T	p.E122X	.	.	.
ANKRD5	63926	broad.mit.edu	36	20	9967076	9967076	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198798	exon2	c.A127G	p.T43A	.	.	.
ANKRD5	63926	broad.mit.edu	36	20	9973099	9973099	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198798	exon4	c.C604T	p.R202X	.	.	.
ANKRD5	63926	broad.mit.edu	36	20	9978099	9978099	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198798	exon6	c.C882T	p.G294G	.	.	.
ANKRD5	63926	broad.mit.edu	36	20	9978617	9978617	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198798	exon6	c.G1400T	p.R467L	.	.	.
DIO3	1735	broad.mit.edu	36	14	101098157	101098157	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001362	exon1	c.G571A	p.V191I	.	.	.
PPP2R5C	5527	broad.mit.edu	36	14	101429176	101429176	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178587	exon7	c.C776A	p.S259Y	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101522230	101522230	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001376	exon8	c.C1915T	p.R639C	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101540665	101540665	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001376	exon24	c.C4941T	p.V1647V	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101563606	101563606	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001376	exon46	c.G9020A	p.R3007Q	.	.	.
HSP90AA1	3320	broad.mit.edu	36	14	101621016	101621016	+	Nonsense_Mutation	SNP	C	A	A	rs3208445	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005348	exon5	c.G736T	p.E246X	.	.	.
TECPR2	9895	broad.mit.edu	36	14	101970378	101970378	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014844	exon9	c.G1471A	p.E491K	.	.	.
RCOR1	23186	broad.mit.edu	36	14	102258363	102258363	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015156	exon11	c.A1267C	p.N423H	.	.	.
CDC42BPB	9578	broad.mit.edu	36	14	102506333	102506333	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006035	exon14	c.G1903T	p.D635Y	.	.	.
CDC42BPB	9578	broad.mit.edu	36	14	102508097	102508097	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006035	exon13	c.G1796A	p.R599Q	.	.	.
MARK3	4140	broad.mit.edu	36	14	103039298	103039298	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001128919	exon17	c.C2216T	p.A739V	.	.	.
BAG5	9529	broad.mit.edu	36	14	103095940	103095940	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001015048	exon2	c.G1315A	p.D439N	.	.	.
BAG5	9529	broad.mit.edu	36	14	103096087	103096087	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001015048	exon2	c.C1168T	p.R390X	.	.	.
PPP1R13B	23368	broad.mit.edu	36	14	103273899	103273899	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015316	exon15	c.G2916T	p.Q972H	.	.	.
TDRD9	122402	broad.mit.edu	36	14	103550918	103550918	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153046	exon21	c.G2210A	p.R737Q	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104477028	104477028	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138420	exon7	c.C15805A	p.L5269I	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104478491	104478491	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138420	exon7	c.C14342A	p.S4781Y	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104480072	104480072	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138420	exon7	c.C12761T	p.T4254I	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104480427	104480427	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138420	exon7	c.C12406T	p.P4136S	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104482215	104482215	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138420	exon7	c.G10618T	p.E3540X	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104482883	104482883	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138420	exon7	c.C9950T	p.S3317L	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104483989	104483989	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138420	exon7	c.C8844T	p.V2948V	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104489566	104489566	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138420	exon7	c.C3267A	p.F1089L	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104491727	104491727	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138420	exon7	c.C1106T	p.T369I	.	.	.
GPR132	29933	broad.mit.edu	36	14	104588754	104588754	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013345	exon4	c.C765T	p.F255F	.	.	.
OR4N2	390429	broad.mit.edu	36	14	19365906	19365906	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004723	exon1	c.T459C	p.F153F	.	.	.
OR4K2	390431	broad.mit.edu	36	14	19414314	19414314	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005501	exon1	c.G48A	p.G16G	.	.	.
OR4K5	79317	broad.mit.edu	36	14	19459463	19459463	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005483	exon1	c.T858G	p.I286M	.	.	.
OR4K15	81127	broad.mit.edu	36	14	19514101	19514101	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005486	exon1	c.C584A	p.P195H	.	.	.
OR4K15	81127	broad.mit.edu	36	14	19514276	19514276	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005486	exon1	c.C759A	p.S253S	.	.	.
OR4K14	122740	broad.mit.edu	36	14	19553181	19553181	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004712	exon1	c.G12A	p.Q4Q	.	.	.
OR4K13	390433	broad.mit.edu	36	14	19572063	19572063	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004714	exon1	c.G695A	p.R232Q	.	.	.
OR4K13	390433	broad.mit.edu	36	14	19572545	19572545	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004714	exon1	c.G213T	p.M71I	.	.	.
OR4L1	122742	broad.mit.edu	36	14	19598124	19598124	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004717	exon1	c.C81A	p.F27L	.	.	.
OR4L1	122742	broad.mit.edu	36	14	19598361	19598361	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004717	exon1	c.C318A	p.F106L	.	.	.
OR4L1	122742	broad.mit.edu	36	14	19598947	19598947	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004717	exon1	c.C904T	p.R302W	.	.	.
OR4K17	390436	broad.mit.edu	36	14	19656019	19656019	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004715	exon1	c.T614C	p.V205A	.	.	.
OR11G2	390439	broad.mit.edu	36	14	19735758	19735758	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005503	exon1	c.T424G	p.F142V	.	.	.
OR11G2	390439	broad.mit.edu	36	14	19736192	19736192	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005503	exon1	c.T858G	p.V286V	.	.	.
OR11H6	122748	broad.mit.edu	36	14	19762339	19762339	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004480	exon1	c.C631A	p.P211T	.	.	.
OR11H6	122748	broad.mit.edu	36	14	19762438	19762438	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004480	exon1	c.C730T	p.L244F	.	.	.
TTC5	91875	broad.mit.edu	36	14	19838701	19838701	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138376	exon3	c.G301A	p.E101K	.	.	.
PARP2	10038	broad.mit.edu	36	14	19889110	19889110	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042618	exon6	c.C486A	p.I162I	.	.	.
PARP2	10038	broad.mit.edu	36	14	19890259	19890259	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042618	exon7	c.G513A	p.T171T	.	.	.
TEP1	7011	broad.mit.edu	36	14	19927245	19927245	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007110	exon17	c.G2517A	p.A839A	.	.	.
APEX1	328	broad.mit.edu	36	14	19995127	19995127	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080648	exon5	c.C577T	p.R193C	.	.	.
APEX1	328	broad.mit.edu	36	14	19995371	19995371	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080648	exon5	c.G821A	p.R274Q	.	.	.
RNASE9	390443	broad.mit.edu	36	14	20094861	20094861	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001110357	exon3	c.C208A	p.L70I	.	.	.
OR6S1	341799	broad.mit.edu	36	14	20178894	20178894	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001968	exon1	c.C797T	p.S266L	.	.	.
RNASE2	6036	broad.mit.edu	36	14	20493807	20493807	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002934	exon2	c.C37T	p.L13F	.	.	.
SLC39A2	29986	broad.mit.edu	36	14	20539480	20539480	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014579	exon4	c.C832A	p.L278I	.	.	.
RPGRIP1	57096	broad.mit.edu	36	14	20832744	20832744	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020366	exon2	c.C154T	p.R52X	.	.	.
RPGRIP1	57096	broad.mit.edu	36	14	20855741	20855741	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020366	exon10	c.G1198A	p.E400K	.	.	.
RPGRIP1	57096	broad.mit.edu	36	14	20859945	20859945	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020366	exon13	c.G1704T	p.K568N	.	.	.
RPGRIP1	57096	broad.mit.edu	36	14	20862647	20862647	+	Missense_Mutation	SNP	G	A	A	rs74034910	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020366	exon14	c.G1793A	p.R598Q	.	.	.
RPGRIP1	57096	broad.mit.edu	36	14	20863837	20863837	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020366	exon16	c.C2375T	p.S792L	.	.	.
RPGRIP1	57096	broad.mit.edu	36	14	20886217	20886217	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020366	exon23	c.G3664T	p.E1222X	.	.	.
SUPT16H	11198	broad.mit.edu	36	14	20890803	20890803	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007192	exon26	c.C3013T	p.R1005C	.	.	.
CHD8	57680	broad.mit.edu	36	14	20943308	20943308	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020920	exon16	c.C2370A	p.F790L	.	.	.
METTL3	56339	broad.mit.edu	36	14	21037042	21037042	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019852	exon10	c.T1598C	p.L533S	.	.	.
OR10G2	26534	broad.mit.edu	36	14	21172518	21172518	+	Nonsense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005466	exon1	c.T321G	p.Y107X	.	.	.
OR4E2	26686	broad.mit.edu	36	14	21204063	21204063	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001912	exon1	c.G927A	p.T309T	.	.	.
OXA1L	5018	broad.mit.edu	36	14	22305622	22305622	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005015	exon1	c.C52A	p.L18I	.	.	.
OXA1L	5018	broad.mit.edu	36	14	22307065	22307065	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005015	exon3	c.C464T	p.A155V	.	.	.
LRP10	26020	broad.mit.edu	36	14	22415855	22415855	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014045	exon6	c.G1542T	p.E514D	.	.	.
LRP10	26020	broad.mit.edu	36	14	22416211	22416211	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014045	exon7	c.G1777T	p.D593Y	.	.	.
CEBPE	1053	broad.mit.edu	36	14	22657856	22657856	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001805	exon1	c.C285T	p.F95F	.	.	.
SLC7A8	23428	broad.mit.edu	36	14	22705395	22705395	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012244	exon2	c.G346T	p.G116X	.	.	.
MYH6	4624	broad.mit.edu	36	14	22921531	22921531	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002471	exon38	c.C5742T	p.I1914I	.	.	.
MYH6	4624	broad.mit.edu	36	14	22928056	22928056	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002471	exon29	c.G4027A	p.D1343N	.	.	.
MYH6	4624	broad.mit.edu	36	14	22935350	22935350	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002471	exon20	c.G2412T	p.K804N	.	.	.
MYH7	4625	broad.mit.edu	36	14	22955290	22955290	+	Silent	SNP	G	A	A	rs7140196	by-cluster,by-frequency	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000257	exon34	c.C4716T	p.I1572I	.	.	.
MYH7	4625	broad.mit.edu	36	14	22956256	22956256	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000257	exon32	c.G4465T	p.E1489X	.	.	.
MYH7	4625	broad.mit.edu	36	14	22972226	22972226	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000257	exon4	c.C252T	p.F84F	.	.	.
MYH7	4625	broad.mit.edu	36	14	22972771	22972771	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000257	exon3	c.C11T	p.S4L	.	.	.
AP1G2	8906	broad.mit.edu	36	14	23103419	23103419	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003917	exon10	c.C940A	p.L314I	.	.	.
AP1G2	8906	broad.mit.edu	36	14	23103684	23103684	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003917	exon9	c.G848A	p.R283Q	.	.	.
DHRS2	10202	broad.mit.edu	36	14	23183199	23183199	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005794	exon6	c.T528C	p.Y176Y	.	.	.
LRRC16B	90668	broad.mit.edu	36	14	23604784	23604784	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138360	exon34	c.C3510T	p.F1170F	.	.	.
DCAF11	80344	broad.mit.edu	36	14	23662125	23662125	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001163484	exon14	c.C1505T	p.S502L	.	.	.
RNF31	55072	broad.mit.edu	36	14	23696672	23696672	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017999	exon16	c.C2712A	p.A904A	.	.	.
CIDEB	27141	broad.mit.edu	36	14	23846459	23846459	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014430	exon4	c.G144A	p.R48R	.	.	.
LTB4R	1241	broad.mit.edu	36	14	23855265	23855265	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181657	exon2	c.T568G	p.F190V	.	.	.
RIPK3	11035	broad.mit.edu	36	14	23877338	23877338	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006871	exon5	c.C621T	p.F207F	.	.	.
NYNRIN	57523	broad.mit.edu	36	14	23948248	23948248	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025081	exon4	c.G1408T	p.D470Y	.	.	.
NYNRIN	57523	broad.mit.edu	36	14	23955985	23955985	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025081	exon9	c.C5190A	p.I1730I	.	.	.
STXBP6	29091	broad.mit.edu	36	14	24396132	24396132	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014178	exon3	c.C226T	p.R76W	.	.	.
NOVA1	4857	broad.mit.edu	36	14	26011387	26011387	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002515	exon4	c.G498T	p.M166I	.	.	.
NOVA1	4857	broad.mit.edu	36	14	26134460	26134460	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002515	exon2	c.C276T	p.Y92Y	.	.	.
FOXG1	2290	broad.mit.edu	36	14	28306861	28306861	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005249	exon1	c.G625A	p.E209K	.	.	.
FOXG1	2290	broad.mit.edu	36	14	28307606	28307606	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005249	exon1	c.G1370T	p.R457I	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29136594	29136594	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002742	exon16	c.C2288A	p.S763Y	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29173436	29173436	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002742	exon8	c.G1253T	p.R418M	.	.	.
G2E3	55632	broad.mit.edu	36	14	30132573	30132573	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017769	exon6	c.T505C	p.W169R	.	.	.
COCH	1690	broad.mit.edu	36	14	30419431	30419431	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004086	exon7	c.C459T	p.P153P	.	.	.
HECTD1	25831	broad.mit.edu	36	14	30668189	30668189	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015382	exon25	c.G4139T	p.S1380I	.	.	.
HEATR5A	25938	broad.mit.edu	36	14	30841462	30841462	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015473	exon27	c.C4375A	p.L1459I	.	.	.
HEATR5A	25938	broad.mit.edu	36	14	30882925	30882925	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015473	exon15	c.C2277A	p.I759I	.	.	.
HEATR5A	25938	broad.mit.edu	36	14	30913845	30913845	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015473	exon6	c.G910T	p.E304X	.	.	.
HEATR5A	25938	broad.mit.edu	36	14	30925443	30925443	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015473	exon3	c.G400T	p.E134X	.	.	.
C14orf126	112487	broad.mit.edu	36	14	30987156	30987156	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080664	exon3	c.G437A	p.G146D	.	.	.
ARHGAP5	394	broad.mit.edu	36	14	31630743	31630743	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001030055	exon2	c.G1117A	p.D373N	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32085801	32085801	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004274	exon4	c.G2191A	p.A731T	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32217304	32217304	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004274	exon8	c.G2767T	p.D923Y	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32361874	32361874	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004274	exon13	c.G5104T	p.E1702X	AKAP6,breast,NS,Substitution - Missense,0	.	.
AKAP6	9472	broad.mit.edu	36	14	32363405	32363405	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004274	exon13	c.C6635G	p.A2212G	.	.	.
NPAS3	64067	broad.mit.edu	36	14	33339213	33339213	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022123	exon11	c.C1853T	p.T618M	.	.	.
EAPP	55837	broad.mit.edu	36	14	34055415	34055415	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018453	exon6	c.C710A	p.S237Y	.	.	.
BAZ1A	11177	broad.mit.edu	36	14	34303983	34303983	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013448	exon22	c.C3544T	p.L1182F	.	.	.
BAZ1A	11177	broad.mit.edu	36	14	34331822	34331822	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013448	exon12	c.C1420A	p.L474I	.	.	.
SRP54	6729	broad.mit.edu	36	14	34557994	34557994	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003136	exon13	c.G1119T	p.K373N	.	.	.
PPP2R3C	55012	broad.mit.edu	36	14	34624633	34624633	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017917	exon13	c.G1276A	p.D426N	.	.	.
PPP2R3C	55012	broad.mit.edu	36	14	34635524	34635524	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017917	exon9	c.A829C	p.R277R	.	.	.
PPP2R3C	55012	broad.mit.edu	36	14	34647118	34647118	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017917	exon5	c.C480A	p.F160L	.	.	.
KIAA0391	9692	broad.mit.edu	36	14	34662342	34662342	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014672	exon2	c.C140A	p.S47Y	.	.	.
NFKBIA	4792	broad.mit.edu	36	14	34941003	34941003	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020529	exon6	c.C921T	p.D307D	.	.	.
INSM2	84684	broad.mit.edu	36	14	35074481	35074481	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032594	exon1	c.G1272T	p.E424D	.	.	.
RALGAPA1	253959	broad.mit.edu	36	14	35174537	35174537	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_194301	exon31	c.C4177A	p.L1393I	.	.	.
SSTR1	6751	broad.mit.edu	36	14	37748877	37748877	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001049	exon3	c.A532C	p.N178H	.	.	.
CLEC14A	161198	broad.mit.edu	36	14	37794247	37794247	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175060	exon1	c.T732C	p.C244C	.	.	.
SEC23A	10484	broad.mit.edu	36	14	38579749	38579749	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006364	exon18	c.G2080T	p.E694X	.	.	.
SIP1	8487	broad.mit.edu	36	14	38657038	38657038	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001009183	exon3	c.C340T	p.R114X	.	.	.
PNN	5411	broad.mit.edu	36	14	38715491	38715491	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002687	exon3	c.C195A	p.F65L	.	.	.
PNN	5411	broad.mit.edu	36	14	38719982	38719982	+	Nonsense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002687	exon9	c.A1318T	p.K440X	.	.	.
MIA2	117153	broad.mit.edu	36	14	38786283	38786283	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_054024	exon4	c.C754T	p.R252W	.	.	.
MIA2	117153	broad.mit.edu	36	14	38786396	38786396	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_054024	exon4	c.G867T	p.K289N	.	.	.
MIA2	117153	broad.mit.edu	36	14	38791774	38791774	+	Missense_Mutation	SNP	G	T	T	rs10134365	by-cluster,by-frequency,by-hapmap,by-1000genomes	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_054024	exon5	c.G1639T	p.D547Y	.	.	.
CTAGE5	4253	broad.mit.edu	36	14	38841113	38841113	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203354	exon10	c.A789C	p.K263N	.	.	.
FSCB	84075	broad.mit.edu	36	14	44043617	44043617	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032135	exon1	c.C2324T	p.S775L	FSCB,breast,NS,Substitution - Missense,0	.	.
FSCB	84075	broad.mit.edu	36	14	44044800	44044800	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032135	exon1	c.C1141A	p.L381I	.	.	.
C14orf28	122525	broad.mit.edu	36	14	44439665	44439665	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001017923	exon2	c.C277A	p.L93I	.	.	.
KLHL28	54813	broad.mit.edu	36	14	44484500	44484500	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017658	exon2	c.C382A	p.L128I	.	.	.
FAM179B	23116	broad.mit.edu	36	14	44501849	44501849	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015091	exon1	c.C475A	p.L159I	.	.	.
FAM179B	23116	broad.mit.edu	36	14	44583717	44583717	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015091	exon13	c.G4048T	p.E1350X	.	.	.
FAM179B	23116	broad.mit.edu	36	14	44583802	44583802	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015091	exon13	c.C4133A	p.S1378Y	.	.	.
FKBP3	2287	broad.mit.edu	36	14	44660551	44660551	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002013	exon4	c.C341A	p.S114Y	.	.	.
FANCM	57697	broad.mit.edu	36	14	44703435	44703435	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020937	exon10	c.C1705T	p.R569C	.	.	.
FANCM	57697	broad.mit.edu	36	14	44709645	44709645	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020937	exon12	c.G2106T	p.E702D	.	.	.
FANCM	57697	broad.mit.edu	36	14	44714879	44714879	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020937	exon14	c.A3172C	p.N1058H	.	.	.
C14orf106	55320	broad.mit.edu	36	14	44756067	44756067	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018353	exon13	c.A2908T	p.R970W	.	.	.
C14orf106	55320	broad.mit.edu	36	14	44763284	44763284	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018353	exon11	c.G2256T	p.K752N	.	.	.
C14orf106	55320	broad.mit.edu	36	14	44763683	44763683	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018353	exon11	c.G1857T	p.L619F	.	.	.
C14orf106	55320	broad.mit.edu	36	14	44785933	44785933	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018353	exon2	c.A307C	p.K103Q	.	.	.
MDGA2	161357	broad.mit.edu	36	14	46496336	46496336	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182830	exon9	c.C1186A	p.L396I	.	.	.
MDGA2	161357	broad.mit.edu	36	14	46496546	46496546	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182830	exon9	c.C976T	p.R326X	.	.	.
MDGA2	161357	broad.mit.edu	36	14	46600447	46600447	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182830	exon7	c.C386A	p.S129Y	.	.	.
C14orf104	55172	broad.mit.edu	36	14	49162510	49162510	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001083908	exon2	c.G1870T	p.E624X	.	.	.
SDCCAG1	9147	broad.mit.edu	36	14	49336941	49336941	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004713	exon23	c.G2319T	p.E773D	.	.	.
SDCCAG1	9147	broad.mit.edu	36	14	49365695	49365695	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004713	exon13	c.G1059T	p.M353I	.	.	.
SDCCAG1	9147	broad.mit.edu	36	14	49365849	49365849	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004713	exon12	c.G991A	p.E331K	.	.	.
C14orf183	196913	broad.mit.edu	36	14	49620143	49620143	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001014830	exon5	c.C951A	p.C317X	.	.	.
SOS2	6655	broad.mit.edu	36	14	49696031	49696031	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006939	exon10	c.C1720T	p.R574C	.	.	.
SOS2	6655	broad.mit.edu	36	14	49696254	49696254	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006939	exon10	c.T1497G	p.I499M	.	.	.
ATP5S	27109	broad.mit.edu	36	14	49862117	49862117	+	Intron	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001003803	exon5	c.A574C	p.R192R	.	.	.
CDKL1	8814	broad.mit.edu	36	14	49868761	49868761	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004196	exon8	c.G938A	p.R313Q	.	.	.
CDKL1	8814	broad.mit.edu	36	14	49932189	49932189	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004196	exon1	c.C151T	p.R51W	.	.	.
ATL1	51062	broad.mit.edu	36	14	50096765	50096765	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181598	exon1	c.G32A	p.W11X	.	.	.
NIN	51199	broad.mit.edu	36	14	50293678	50293678	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182944	exon18	c.G3820A	p.D1274N	.	.	.
NIN	51199	broad.mit.edu	36	14	50294491	50294491	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182944	exon18	c.C3007T	p.R1003X	.	.	.
NIN	51199	broad.mit.edu	36	14	50295071	50295071	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182944	exon18	c.A2427C	p.R809S	.	.	.
NIN	51199	broad.mit.edu	36	14	50298267	50298267	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182944	exon16	c.C1887T	p.L629L	.	.	.
FRMD6	122786	broad.mit.edu	36	14	51251810	51251810	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152330	exon10	c.T843G	p.I281M	.	.	.
FRMD6	122786	broad.mit.edu	36	14	51264417	51264417	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152330	exon14	c.G1765T	p.D589Y	.	.	.
C14orf166	51637	broad.mit.edu	36	14	51530230	51530230	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016039	exon3	c.C226T	p.R76X	.	.	.
PTGDR	5729	broad.mit.edu	36	14	51811281	51811281	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000953	exon2	c.G929A	p.R310Q	.	.	.
TXNDC16	57544	broad.mit.edu	36	14	52024892	52024892	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020784	exon12	c.T1047G	p.N349K	.	.	.
GPR137C	283554	broad.mit.edu	36	14	52136644	52136644	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099652	exon3	c.C552T	p.C184C	.	.	.
ERO1L	30001	broad.mit.edu	36	14	52194475	52194475	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014584	exon11	c.C718A	p.L240I	.	.	.
PSMC6	5706	broad.mit.edu	36	14	52244844	52244844	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002806	exon2	c.G195A	p.Q65Q	.	.	.
PSMC6	5706	broad.mit.edu	36	14	52254754	52254754	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002806	exon9	c.G691T	p.E231X	.	.	.
PSMC6	5706	broad.mit.edu	36	14	52255497	52255497	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002806	exon10	c.G810A	p.T270T	.	.	.
PSMC6	5706	broad.mit.edu	36	14	52263990	52263990	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002806	exon14	c.C1117A	p.H373N	.	.	.
STYX	6815	broad.mit.edu	36	14	52294219	52294219	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145251	exon7	c.C349A	p.L117I	.	.	.
DDHD1	80821	broad.mit.edu	36	14	52583298	52583298	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160148	exon13	c.T2641G	p.L881V	.	.	.
DDHD1	80821	broad.mit.edu	36	14	52599415	52599415	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160148	exon7	c.C1762T	p.R588X	.	.	.
GMFB	2764	broad.mit.edu	36	14	54017386	54017386	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004124	exon5	c.G239T	p.G80V	.	.	.
SAMD4A	23034	broad.mit.edu	36	14	54273697	54273697	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015589	exon3	c.C918T	p.H306H	.	.	.
SAMD4A	23034	broad.mit.edu	36	14	54296637	54296637	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015589	exon6	c.C1182T	p.I394I	.	.	.
SAMD4A	23034	broad.mit.edu	36	14	54306677	54306677	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015589	exon8	c.C1699T	p.R567X	.	.	.
WDHD1	11169	broad.mit.edu	36	14	54492139	54492139	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007086	exon24	c.G2940T	p.Q980H	.	.	.
WDHD1	11169	broad.mit.edu	36	14	54518129	54518129	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007086	exon16	c.C1942T	p.R648X	.	.	.
WDHD1	11169	broad.mit.edu	36	14	54545142	54545142	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007086	exon5	c.G387T	p.Q129H	.	.	.
SOCS4	122809	broad.mit.edu	36	14	54580443	54580443	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080867	exon2	c.C931T	p.R311X	.	.	.
DLGAP5	9787	broad.mit.edu	36	14	54695039	54695039	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146015	exon14	c.C1827T	p.F609F	.	.	.
DLGAP5	9787	broad.mit.edu	36	14	54716105	54716105	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146015	exon7	c.G769T	p.D257Y	.	.	.
DLGAP5	9787	broad.mit.edu	36	14	54720033	54720033	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146015	exon3	c.A430C	p.K144Q	.	.	.
FBXO34	55030	broad.mit.edu	36	14	54888947	54888947	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152231	exon2	c.C2086T	p.R696W	.	.	.
KTN1	3895	broad.mit.edu	36	14	55153067	55153067	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004986	exon3	c.A603G	p.K201K	.	.	.
KTN1	3895	broad.mit.edu	36	14	55188381	55188381	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004986	exon25	c.T2586G	p.V862V	.	.	.
KTN1	3895	broad.mit.edu	36	14	55216061	55216061	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004986	exon41	c.C3803A	p.S1268Y	.	.	.
C14orf101	54916	broad.mit.edu	36	14	56142131	56142131	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017799	exon5	c.C613A	p.L205I	.	.	.
C14orf101	54916	broad.mit.edu	36	14	56152440	56152440	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017799	exon8	c.G883A	p.E295K	.	.	.
MUDENG	55745	broad.mit.edu	36	14	56805854	56805854	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018229	exon1	c.C69A	p.F23L	.	.	.
SLC35F4	341880	broad.mit.edu	36	14	57100816	57100816	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080455	exon8	c.C1356A	p.F452L	.	.	.
SLC35F4	341880	broad.mit.edu	36	14	57106368	57106368	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080455	exon6	c.C1125A	p.I375I	.	.	.
ACTR10	55860	broad.mit.edu	36	14	57768691	57768691	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018477	exon12	c.G1025A	p.R342Q	.	.	.
PSMA3	5684	broad.mit.edu	36	14	57794409	57794409	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002788	exon5	c.G344T	p.R115I	.	.	.
ARID4A	5926	broad.mit.edu	36	14	57903484	57903484	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023000	exon23	c.A3492C	p.K1164N	.	.	.
KIAA0586	9786	broad.mit.edu	36	14	57997539	57997539	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014749	exon13	c.G1739A	p.R580Q	.	.	.
KIAA0586	9786	broad.mit.edu	36	14	58011120	58011120	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014749	exon18	c.C2449A	p.L817M	.	.	.
KIAA0586	9786	broad.mit.edu	36	14	58025337	58025337	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014749	exon23	c.C3545T	p.A1182V	.	.	.
DACT1	51339	broad.mit.edu	36	14	58181785	58181785	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016651	exon4	c.G691A	p.A231T	.	.	.
RTN1	6252	broad.mit.edu	36	14	59282554	59282554	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021136	exon2	c.G640A	p.E214K	.	.	.
C14orf135	64430	broad.mit.edu	36	14	59651680	59651680	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022495	exon3	c.G403T	p.E135X	.	.	.
C14orf39	317761	broad.mit.edu	36	14	60004977	60004977	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174978	exon9	c.C706A	p.L236I	.	.	.
C14orf39	317761	broad.mit.edu	36	14	60014805	60014805	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174978	exon5	c.T289G	p.F97V	.	.	.
SIX4	51804	broad.mit.edu	36	14	60250038	60250038	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017420	exon3	c.C2186T	p.S729F	.	.	.
SIX4	51804	broad.mit.edu	36	14	60250427	60250427	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017420	exon3	c.C1797A	p.I599I	.	.	.
TRMT5	57570	broad.mit.edu	36	14	60512257	60512257	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020810	exon4	c.G1133T	p.R378I	.	.	.
TRMT5	57570	broad.mit.edu	36	14	60512321	60512321	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020810	exon4	c.A1069C	p.K357Q	.	.	.
SLC38A6	145389	broad.mit.edu	36	14	60566930	60566930	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153811	exon6	c.C418A	p.L140I	.	.	.
PRKCH	5583	broad.mit.edu	36	14	60987382	60987382	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006255	exon6	c.T772G	p.F258V	.	.	.
HIF1A	3091	broad.mit.edu	36	14	61256914	61256914	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181054	exon2	c.G97T	p.E33X	.	.	.
HIF1A	3091	broad.mit.edu	36	14	61274629	61274629	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181054	exon10	c.G1321A	p.E441K	.	.	.
SYT16	83851	broad.mit.edu	36	14	61606196	61606196	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031914	exon2	c.G646T	p.G216X	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62244118	62244118	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139318	exon11	c.C2828T	p.S943L	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62517375	62517375	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172376	exon6	c.G736T	p.D246Y	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62517732	62517732	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_172376	exon6	c.C379A	p.L127I	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62523613	62523613	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172376	exon5	c.G305A	p.R102Q	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62581607	62581607	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172375	exon1	c.G51T	p.E17D	.	.	.
RHOJ	57381	broad.mit.edu	36	14	62817510	62817510	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020663	exon3	c.C306T	p.V102V	.	.	.
WDR89	112840	broad.mit.edu	36	14	63135331	63135331	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080666	exon3	c.G1083T	p.E361D	.	.	.
WDR89	112840	broad.mit.edu	36	14	63135775	63135775	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080666	exon3	c.T639C	p.C213C	.	.	.
WDR89	112840	broad.mit.edu	36	14	63136315	63136315	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080666	exon3	c.G99T	p.K33N	.	.	.
SGPP1	81537	broad.mit.edu	36	14	63222694	63222694	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030791	exon3	c.G1208A	p.R403Q	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63531665	63531665	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015180	exon23	c.G2932T	p.E978X	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63592563	63592563	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015180	exon49	c.G9893A	p.R3298Q	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63680349	63680349	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015180	exon83	c.C15413T	p.T5138M	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63706763	63706763	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015180	exon94	c.C17065T	p.R5689W	.	.	.
FNTB	2342	broad.mit.edu	36	14	64580807	64580807	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002028	exon9	c.G848A	p.R283Q	.	.	.
PLEKHH1	57475	broad.mit.edu	36	14	67123690	67123690	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020715	exon29	c.G4080A	p.G1360G	.	.	.
PIGH	5283	broad.mit.edu	36	14	67130231	67130231	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004569	exon2	c.C372A	p.I124I	.	.	.
ARG2	384	broad.mit.edu	36	14	67187307	67187307	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172	exon8	c.G982T	p.E328X	.	.	.
RDH11	51109	broad.mit.edu	36	14	67232125	67232125	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016026	exon1	c.C49A	p.L17M	.	.	.
RDH12	145226	broad.mit.edu	36	14	67261682	67261682	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152443	exon5	c.G301A	p.D101N	.	.	.
ZFYVE26	23503	broad.mit.edu	36	14	67291711	67291711	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015346	exon37	c.C6796T	p.R2266W	.	.	.
ZFYVE26	23503	broad.mit.edu	36	14	67344285	67344285	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015346	exon5	c.C469T	p.L157F	.	.	.
ACTN1	87	broad.mit.edu	36	14	68420772	68420772	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130005	exon14	c.G1501A	p.E501K	.	.	.
GALNTL1	57452	broad.mit.edu	36	14	68878227	68878227	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020692	exon12	c.G1264T	p.E422X	.	.	.
SRSF5	6430	broad.mit.edu	36	14	69305696	69305696	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039465	exon5	c.A341C	p.N114T	.	.	.
SLC10A1	6554	broad.mit.edu	36	14	69333603	69333603	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003049	exon1	c.C23T	p.A8V	.	.	.
SLC8A3	6547	broad.mit.edu	36	14	69585285	69585285	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033262	exon7	c.G2353T	p.D785Y	.	.	.
SLC8A3	6547	broad.mit.edu	36	14	69585357	69585357	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033262	exon7	c.C2281A	p.L761I	.	.	.
ADAM21	8747	broad.mit.edu	36	14	69995573	69995573	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003813	exon1	c.C1604A	p.S535Y	.	.	.
ADAM21	8747	broad.mit.edu	36	14	69996036	69996036	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003813	exon1	c.T2067C	p.I689I	.	.	.
MAP3K9	4293	broad.mit.edu	36	14	70286505	70286505	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033141	exon4	c.C1048T	p.R350X	.	.	.
PCNX	22990	broad.mit.edu	36	14	70570463	70570463	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014982	exon18	c.C3731A	p.S1244Y	.	.	.
PCNX	22990	broad.mit.edu	36	14	70581750	70581750	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014982	exon20	c.C4015T	p.R1339X	.	.	.
PCNX	22990	broad.mit.edu	36	14	70583492	70583492	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014982	exon21	c.G4077T	p.K1359N	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71125048	71125048	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015556	exon2	c.C706T	p.R236X	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71125160	71125160	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015556	exon2	c.G818T	p.R273M	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71125559	71125559	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015556	exon2	c.A1217C	p.K406T	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71125680	71125680	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015556	exon2	c.C1338A	p.S446S	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71125785	71125785	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015556	exon2	c.C1443T	p.I481I	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71186934	71186934	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015556	exon5	c.C1948T	p.R650W	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71208105	71208105	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015556	exon8	c.T2772G	p.V924V	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71221915	71221915	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015556	exon10	c.G3188A	p.R1063Q	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71241224	71241224	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015556	exon13	c.C3680A	p.S1227Y	.	.	.
DPF3	8110	broad.mit.edu	36	14	72260142	72260142	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012074	exon5	c.G477T	p.E159D	.	.	.
RBM25	58517	broad.mit.edu	36	14	72645878	72645878	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021239	exon14	c.G1617T	p.E539D	.	.	.
RBM25	58517	broad.mit.edu	36	14	72648032	72648032	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021239	exon16	c.G2061T	p.K687N	.	.	.
PAPLN	89932	broad.mit.edu	36	14	72809055	72809055	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173462	exon26	c.A3686G	p.E1229G	.	.	.
HEATR4	399671	broad.mit.edu	36	14	73058939	73058939	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203309	exon2	c.G530A	p.R177Q	.	.	.
HEATR4	399671	broad.mit.edu	36	14	73059430	73059430	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_203309	exon2	c.G39T	p.K13N	.	.	.
ACOT6	641372	broad.mit.edu	36	14	73156076	73156076	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001037162	exon2	c.G404T	p.R135I	.	.	.
PTGR2	145482	broad.mit.edu	36	14	73410658	73410658	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146154	exon4	c.T336C	p.N112N	.	.	.
PTGR2	145482	broad.mit.edu	36	14	73415755	73415755	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146154	exon6	c.A723G	p.I241M	.	.	.
FAM161B	145483	broad.mit.edu	36	14	73479151	73479151	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152445	exon4	c.A946C	p.I316L	.	.	.
COQ6	51004	broad.mit.edu	36	14	73489958	73489958	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182476	exon2	c.G231T	p.E77D	.	.	.
C14orf45	80127	broad.mit.edu	36	14	73570544	73570544	+	5'UTR	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025057	exon4	c.G412T	p.E138X	.	.	.
C14orf45	80127	broad.mit.edu	36	14	73586437	73586437	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025057	exon8	c.G1072T	p.E358X	.	.	.
ALDH6A1	4329	broad.mit.edu	36	14	73603970	73603970	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005589	exon8	c.A908G	p.N303S	.	.	.
KIAA0317	9870	broad.mit.edu	36	14	74212382	74212382	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039479	exon8	c.G853A	p.E285K	.	.	.
FCF1	51077	broad.mit.edu	36	14	74269248	74269248	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015962	exon6	c.G427T	p.D143Y	.	.	.
YLPM1	56252	broad.mit.edu	36	14	74316992	74316992	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019589	exon3	c.G1242A	p.Q414Q	.	.	.
YLPM1	56252	broad.mit.edu	36	14	74335822	74335822	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019589	exon5	c.C4069T	p.R1357X	.	.	.
PROX2	283571	broad.mit.edu	36	14	74399645	74399645	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080408	exon1	c.C646A	p.P216T	.	.	.
DLST	1743	broad.mit.edu	36	14	74425732	74425732	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001933	exon5	c.G201T	p.K67N	.	.	.
PGF	5228	broad.mit.edu	36	14	74485867	74485867	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002632	exon3	c.C261T	p.C87C	.	.	.
MLH3	27030	broad.mit.edu	36	14	74567037	74567037	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040108	exon9	c.C3949T	p.R1317W	.	.	.
MLH3	27030	broad.mit.edu	36	14	74582843	74582843	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040108	exon2	c.T3269C	p.V1090A	.	.	.
MLH3	27030	broad.mit.edu	36	14	74583801	74583801	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040108	exon2	c.G2311T	p.E771X	.	.	.
TMED10	10972	broad.mit.edu	36	14	74672264	74672264	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006827	exon4	c.G490T	p.D164Y	.	.	.
TMED10	10972	broad.mit.edu	36	14	74684158	74684158	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006827	exon3	c.G373T	p.D125Y	.	.	.
FOS	2353	broad.mit.edu	36	14	74817281	74817281	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005252	exon4	c.G544A	p.E182K	.	.	.
BATF	10538	broad.mit.edu	36	14	75061225	75061225	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006399	exon2	c.C109T	p.R37C	.	.	.
FLVCR2	55640	broad.mit.edu	36	14	75158185	75158185	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017791	exon2	c.C680T	p.A227V	.	.	.
C14orf118	55668	broad.mit.edu	36	14	75709683	75709683	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017926	exon5	c.C946T	p.R316X	.	.	.
C14orf118	55668	broad.mit.edu	36	14	75737924	75737924	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017926	exon10	c.G1426T	p.E476X	.	.	.
ANGEL1	23357	broad.mit.edu	36	14	76339887	76339887	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015305	exon6	c.G1502T	p.R501I	.	.	.
C14orf166B	145497	broad.mit.edu	36	14	76380960	76380960	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_194287	exon7	c.C690A	p.F230L	.	.	.
TMEM63C	57156	broad.mit.edu	36	14	76775701	76775701	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020431	exon12	c.G809A	p.R270H	.	.	.
POMT2	29954	broad.mit.edu	36	14	76821679	76821679	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013382	exon13	c.G1382T	p.R461M	.	.	.
TMED8	283578	broad.mit.edu	36	14	76877930	76877930	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_213601	exon6	c.C915T	p.F305F	.	.	.
VIPAR	63894	broad.mit.edu	36	14	76978716	76978716	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022067	exon11	c.G674T	p.R225I	.	.	.
ISM2	145501	broad.mit.edu	36	14	77018422	77018422	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199296	exon4	c.C969T	p.S323S	.	.	.
NRXN3	9369	broad.mit.edu	36	14	78504274	78504274	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004796	exon11	c.C1855T	p.L619F	.	.	.
DIO2	1734	broad.mit.edu	36	14	79739187	79739187	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000793	exon3	c.G420A	p.L140L	.	.	.
C14orf145	145508	broad.mit.edu	36	14	80329152	80329152	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152446	exon13	c.G1265A	p.R422Q	.	.	.
TSHR	7253	broad.mit.edu	36	14	80675953	80675953	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000369	exon9	c.G870A	p.K290K	.	.	.
STON2	85439	broad.mit.edu	36	14	80814605	80814605	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033104	exon4	c.A803G	p.N268S	.	.	.
SEL1L	6400	broad.mit.edu	36	14	81020454	81020454	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005065	exon19	c.C1914A	p.F638L	.	.	.
SEL1L	6400	broad.mit.edu	36	14	81026555	81026555	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005065	exon13	c.C1262T	p.S421L	.	.	.
FLRT2	23768	broad.mit.edu	36	14	85157915	85157915	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013231	exon2	c.G304A	p.E102K	.	.	.
FLRT2	23768	broad.mit.edu	36	14	85158200	85158200	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013231	exon2	c.G589A	p.D197N	.	.	.
FLRT2	23768	broad.mit.edu	36	14	85158512	85158512	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013231	exon2	c.A901G	p.N301D	.	.	.
GPR65	8477	broad.mit.edu	36	14	87547425	87547425	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003608	exon2	c.G481A	p.D161N	.	.	.
PTPN21	11099	broad.mit.edu	36	14	88005168	88005168	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007039	exon18	c.C3241A	p.L1081I	.	.	.
PTPN21	11099	broad.mit.edu	36	14	88008436	88008436	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007039	exon15	c.C2776T	p.R926X	.	.	.
PTPN21	11099	broad.mit.edu	36	14	88041421	88041421	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007039	exon5	c.A496T	p.K166X	.	.	.
ZC3H14	79882	broad.mit.edu	36	14	88104238	88104238	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160104	exon3	c.G182A	p.R61Q	.	.	.
EML5	161436	broad.mit.edu	36	14	88152291	88152291	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_183387	exon42	c.C5845T	p.R1949X	.	.	.
EML5	161436	broad.mit.edu	36	14	88157359	88157359	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_183387	exon37	c.G5053A	p.E1685K	.	.	.
EML5	161436	broad.mit.edu	36	14	88161103	88161103	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_183387	exon35	c.G4862A	p.R1621Q	.	.	.
EML5	161436	broad.mit.edu	36	14	88232948	88232948	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_183387	exon15	c.C2340T	p.F780F	.	.	.
C14orf143	90141	broad.mit.edu	36	14	89490062	89490062	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145231	exon2	c.C112A	p.L38I	.	.	.
KCNK13	56659	broad.mit.edu	36	14	89720506	89720506	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022054	exon2	c.C633T	p.C211C	.	.	.
C14orf102	55051	broad.mit.edu	36	14	89840256	89840256	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017970	exon5	c.G781T	p.D261Y	.	.	.
TTC7B	145567	broad.mit.edu	36	14	90191185	90191185	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010854	exon12	c.C1364T	p.A455V	.	.	.
RPS6KA5	9252	broad.mit.edu	36	14	90411414	90411414	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004755	exon15	c.G1880A	p.R627Q	.	.	.
RPS6KA5	9252	broad.mit.edu	36	14	90456323	90456323	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004755	exon7	c.T786A	p.N262K	.	.	.
RPS6KA5	9252	broad.mit.edu	36	14	90479262	90479262	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004755	exon5	c.T531C	p.D177D	.	.	.
RPS6KA5	9252	broad.mit.edu	36	14	90483546	90483546	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004755	exon4	c.G496A	p.E166K	.	.	.
C14orf159	80017	broad.mit.edu	36	14	90703470	90703470	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001102368	exon4	c.G252T	p.E84D	.	.	.
SMEK1	55671	broad.mit.edu	36	14	91001498	91001498	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032560	exon12	c.G1640T	p.R547I	.	.	.
CATSPERB	79820	broad.mit.edu	36	14	91124148	91124148	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024764	exon25	c.G2984T	p.R995I	.	.	.
CATSPERB	79820	broad.mit.edu	36	14	91128060	91128060	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024764	exon23	c.C2749T	p.R917W	.	.	.
CATSPERB	79820	broad.mit.edu	36	14	91157940	91157940	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024764	exon19	c.G2025T	p.K675N	.	.	.
CATSPERB	79820	broad.mit.edu	36	14	91196010	91196010	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024764	exon15	c.G1356T	p.K452N	.	.	.
CATSPERB	79820	broad.mit.edu	36	14	91259149	91259149	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024764	exon4	c.G306T	p.T102T	.	.	.
CATSPERB	79820	broad.mit.edu	36	14	91261216	91261216	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024764	exon3	c.G129T	p.E43D	.	.	.
FBLN5	10516	broad.mit.edu	36	14	91413708	91413708	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006329	exon10	c.A1061G	p.D354G	.	.	.
TRIP11	9321	broad.mit.edu	36	14	91541351	91541351	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004239	exon11	c.C2722A	p.L908I	.	.	.
SLC24A4	123041	broad.mit.edu	36	14	92029704	92029704	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153646	exon17	c.G1848A	p.P616P	.	.	.
RIN3	79890	broad.mit.edu	36	14	92113548	92113548	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024832	exon3	c.G340A	p.E114K	.	.	.
LGMN	5641	broad.mit.edu	36	14	92240455	92240455	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008530	exon15	c.A1264C	p.K422Q	.	.	.
GOLGA5	9950	broad.mit.edu	36	14	92333575	92333575	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005113	exon2	c.C40A	p.L14I	.	.	.
GOLGA5	9950	broad.mit.edu	36	14	92333873	92333873	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005113	exon2	c.G338T	p.R113I	.	.	.
GOLGA5	9950	broad.mit.edu	36	14	92360675	92360675	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005113	exon9	c.G1652A	p.R551Q	.	.	.
GOLGA5	9950	broad.mit.edu	36	14	92369413	92369413	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005113	exon10	c.C1913T	p.S638L	.	.	.
ITPK1	3705	broad.mit.edu	36	14	92530087	92530087	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142594	exon5	c.C255T	p.I85I	.	.	.
MOAP1	64112	broad.mit.edu	36	14	92719419	92719419	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022151	exon3	c.C922T	p.R308C	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93078742	93078742	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020818	exon14	c.C1171T	p.R391C	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93108164	93108164	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020818	exon15	c.G1396A	p.E466K	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93114046	93114046	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020818	exon18	c.C1786T	p.R596C	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93149159	93149159	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020818	exon27	c.G3487A	p.A1163T	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93222735	93222735	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020818	exon44	c.A6470G	p.D2157G	.	.	.
FAM181A	90050	broad.mit.edu	36	14	93464429	93464429	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138344	exon3	c.C231T	p.N77N	.	.	.
FAM181A	90050	broad.mit.edu	36	14	93465248	93465248	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138344	exon3	c.C1050A	p.V350V	.	.	.
OTUB2	78990	broad.mit.edu	36	14	93575180	93575180	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023112	exon3	c.A218C	p.K73T	.	.	.
DDX24	57062	broad.mit.edu	36	14	93591244	93591244	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020414	exon7	c.C2029T	p.R677X	.	.	.
DDX24	57062	broad.mit.edu	36	14	93596602	93596602	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020414	exon5	c.C1508T	p.T503M	.	.	.
PPP4R4	57718	broad.mit.edu	36	14	93777952	93777952	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_058237	exon10	c.G1051T	p.E351X	.	.	.
PPP4R4	57718	broad.mit.edu	36	14	93786322	93786322	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_058237	exon15	c.C1672T	p.R558C	.	.	.
SERPINA1	5265	broad.mit.edu	36	14	93919036	93919036	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001127702	exon3	c.G292A	p.D98N	.	.	.
SERPINA11	256394	broad.mit.edu	36	14	93979260	93979260	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080451	exon4	c.G973T	p.D325Y	.	.	.
SERPINA12	145264	broad.mit.edu	36	14	94025739	94025739	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173850	exon5	c.G1024A	p.A342T	.	.	.
SERPINA4	5267	broad.mit.edu	36	14	94103201	94103201	+	Nonsense_Mutation	SNP	C	A	A	rs13306799	by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006215	exon3	c.C791A	p.S264X	.	.	.
SERPINA4	5267	broad.mit.edu	36	14	94104258	94104258	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006215	exon4	c.C963A	p.F321L	.	.	.
SERPINA3	12	broad.mit.edu	36	14	94158469	94158469	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001085	exon4	c.C956T	p.S319L	.	.	.
CLMN	79789	broad.mit.edu	36	14	94740002	94740002	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024734	exon9	c.G1437A	p.S479S	.	.	.
CLMN	79789	broad.mit.edu	36	14	94740326	94740326	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024734	exon9	c.G1113A	p.A371A	.	.	.
CLMN	79789	broad.mit.edu	36	14	94740517	94740517	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024734	exon9	c.G922A	p.E308K	.	.	.
TCL1A	8115	broad.mit.edu	36	14	95248349	95248349	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021966	exon2	c.C258A	p.S86S	.	.	.
BDKRB2	624	broad.mit.edu	36	14	95773228	95773228	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000623	exon2	c.C31A	p.L11M	.	.	.
BDKRB2	624	broad.mit.edu	36	14	95776781	95776781	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000623	exon3	c.C363T	p.F121F	.	.	.
ATG2B	55102	broad.mit.edu	36	14	95831185	95831185	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018036	exon36	c.T5291G	p.L1764R	.	.	.
ATG2B	55102	broad.mit.edu	36	14	95868646	95868646	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018036	exon9	c.C1307A	p.S436X	.	.	.
C14orf129	51527	broad.mit.edu	36	14	95921643	95921643	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016472	exon3	c.G289T	p.D97Y	.	.	.
PAPOLA	10914	broad.mit.edu	36	14	96056235	96056235	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032632	exon2	c.G99T	p.E33D	.	.	.
VRK1	7443	broad.mit.edu	36	14	96392327	96392327	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003384	exon9	c.G817T	p.D273Y	.	.	.
SETD3	84193	broad.mit.edu	36	14	98997320	98997320	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032233	exon4	c.G307T	p.E103X	.	.	.
EML1	2009	broad.mit.edu	36	14	99401640	99401640	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008707	exon3	c.C287T	p.T96M	.	.	.
EML1	2009	broad.mit.edu	36	14	99433376	99433376	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008707	exon8	c.C876T	p.D292D	.	.	.
EML1	2009	broad.mit.edu	36	14	99445567	99445567	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008707	exon12	c.G1294A	p.E432K	.	.	.
EML1	2009	broad.mit.edu	36	14	99446370	99446370	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008707	exon13	c.C1335A	p.F445L	.	.	.
YY1	7528	broad.mit.edu	36	14	99812617	99812617	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003403	exon4	c.G941T	p.R314I	.	.	.
WDR25	79446	broad.mit.edu	36	14	99917431	99917431	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001161476	exon2	c.C417A	p.L139L	.	.	.
ZNF280A	129025	broad.mit.edu	36	22	21198699	21198699	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080740	exon2	c.1256delA	p.N419fs	.	.	.
XKR3	150165	broad.mit.edu	36	22	15644659	15644659	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175878	exon4	c.A1230C	p.P410P	.	.	.
XKR3	150165	broad.mit.edu	36	22	15668683	15668683	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175878	exon2	c.G281T	p.R94I	.	.	.
CECR1	51816	broad.mit.edu	36	22	16050853	16050853	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_177405	exon3	c.G228A	p.T76T	.	.	.
CECR2	27443	broad.mit.edu	36	22	16356597	16356597	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031413	exon2	c.C260T	p.T87M	.	.	.
CECR2	27443	broad.mit.edu	36	22	16408174	16408174	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031413	exon16	c.C3133T	p.R1045W	.	.	.
BCL2L13	23786	broad.mit.edu	36	22	16565121	16565121	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015367	exon6	c.C569T	p.S190L	.	.	.
BID	637	broad.mit.edu	36	22	16600849	16600849	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001196	exon5	c.C510A	p.V170V	.	.	.
PEX26	55670	broad.mit.edu	36	22	16942752	16942752	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017929	exon3	c.A343C	p.K115Q	.	.	.
CLTCL1	8218	broad.mit.edu	36	22	17555076	17555076	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007098	exon29	c.C4599A	p.L1533L	.	.	.
CLTCL1	8218	broad.mit.edu	36	22	17597448	17597448	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001835	exon11	c.C1695T	p.F565F	.	.	.
CLTCL1	8218	broad.mit.edu	36	22	17600769	17600769	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001835	exon9	c.C1441T	p.R481W	.	.	.
HIRA	7290	broad.mit.edu	36	22	17720888	17720888	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003325	exon23	c.G2839A	p.V947I	.	.	.
UFD1L	7353	broad.mit.edu	36	22	17824434	17824434	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005659	exon8	c.T572G	p.F191C	.	.	.
UFD1L	7353	broad.mit.edu	36	22	17825656	17825656	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005659	exon7	c.G502A	p.E168K	.	.	.
UFD1L	7353	broad.mit.edu	36	22	17843072	17843072	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005659	exon2	c.C57A	p.F19L	.	.	.
TXNRD2	10587	broad.mit.edu	36	22	18278902	18278902	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006440	exon8	c.A660C	p.K220N	.	.	.
DGCR8	54487	broad.mit.edu	36	22	18457238	18457238	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001190326	exon4	c.G927T	p.M309I	.	.	.
PI4KA	5297	broad.mit.edu	36	22	19434265	19434265	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_058004	exon28	c.C2997T	p.F999F	.	.	.
PI4KA	5297	broad.mit.edu	36	22	19445658	19445658	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_058004	exon23	c.G2551T	p.D851Y	.	.	.
CRKL	1399	broad.mit.edu	36	22	19618475	19618475	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005207	exon2	c.G720A	p.A240A	.	.	.
CCDC116	164592	broad.mit.edu	36	22	20318735	20318735	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152612	exon3	c.C497T	p.A166V	.	.	.
YPEL1	29799	broad.mit.edu	36	22	20387727	20387727	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013313	exon4	c.C202A	p.L68I	.	.	.
PRAME	23532	broad.mit.edu	36	22	21222289	21222289	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206955	exon5	c.A812G	p.H271R	.	.	.
PRAME	23532	broad.mit.edu	36	22	21222481	21222481	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_206955	exon5	c.G620A	p.R207H	.	.	.
RTDR1	27156	broad.mit.edu	36	22	21731654	21731654	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014433	exon7	c.G1033A	p.E345K	.	.	.
RTDR1	27156	broad.mit.edu	36	22	21736139	21736139	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014433	exon5	c.G594T	p.K198N	.	.	.
RGL4	266747	broad.mit.edu	36	22	22364556	22364556	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153615	exon2	c.G214A	p.E72K	.	.	.
MMP11	4320	broad.mit.edu	36	22	22452865	22452865	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005940	exon4	c.C579T	p.F193F	.	.	.
GGT5	2687	broad.mit.edu	36	22	22952608	22952608	+	Silent	SNP	C	T	T	rs58692741	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004121	exon7	c.G1029A	p.P343P	.	.	.
ADORA2A	135	broad.mit.edu	36	22	23167060	23167060	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000675	exon3	c.C842T	p.S281L	.	.	.
ADORA2A	135	broad.mit.edu	36	22	23167121	23167121	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000675	exon3	c.G903T	p.K301N	.	.	.
PIWIL3	440822	broad.mit.edu	36	22	23445745	23445745	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008496	exon20	c.T2502C	p.Y834Y	.	.	.
PIWIL3	440822	broad.mit.edu	36	22	23480797	23480797	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008496	exon7	c.C727T	p.R243C	.	.	.
PIWIL3	440822	broad.mit.edu	36	22	23481834	23481834	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008496	exon6	c.C609T	p.I203I	.	.	.
SGSM1	129049	broad.mit.edu	36	22	23594350	23594350	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098497	exon11	c.C1002T	p.S334S	.	.	.
SGSM1	129049	broad.mit.edu	36	22	23631121	23631121	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098497	exon21	c.C2785A	p.L929I	.	.	.
SGSM1	129049	broad.mit.edu	36	22	23645920	23645920	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098497	exon24	c.G3153T	p.E1051D	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24487081	24487081	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032608	exon2	c.G22A	p.A8T	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24494630	24494630	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032608	exon4	c.G747T	p.K249N	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24495302	24495302	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032608	exon4	c.G1419T	p.K473N	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24624417	24624417	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032608	exon29	c.G4812T	p.K1604N	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24753385	24753385	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032608	exon43	c.G7445A	p.R2482H	.	.	.
SEZ6L	23544	broad.mit.edu	36	22	25018897	25018897	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001184776	exon2	c.C620T	p.S207L	.	.	.
SEZ6L	23544	broad.mit.edu	36	22	25066453	25066453	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001184776	exon10	c.C2067A	p.V689V	.	.	.
SEZ6L	23544	broad.mit.edu	36	22	25101561	25101561	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184776	exon13	c.A2623G	p.T875A	.	.	.
HPS4	89781	broad.mit.edu	36	22	25190708	25190708	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152841	exon9	c.C873T	p.N291N	.	.	.
CRYBB1	1414	broad.mit.edu	36	22	25333956	25333956	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001887	exon4	c.G329A	p.R110H	.	.	.
CRYBB1	1414	broad.mit.edu	36	22	25338142	25338142	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001887	exon3	c.G193A	p.E65K	.	.	.
MN1	4330	broad.mit.edu	36	22	26526070	26526070	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002430	exon1	c.G462A	p.E154E	.	.	.
PITPNB	23760	broad.mit.edu	36	22	26580906	26580906	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012399	exon11	c.C790T	p.R264X	.	.	.
CCDC117	150275	broad.mit.edu	36	22	27512259	27512259	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173510	exon5	c.C785A	p.S262Y	.	.	.
C22orf31	25770	broad.mit.edu	36	22	27784761	27784761	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015370	exon3	c.A842C	p.K281T	.	.	.
C22orf31	25770	broad.mit.edu	36	22	27785128	27785128	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015370	exon3	c.G475T	p.D159Y	.	.	.
RFPL1	5988	broad.mit.edu	36	22	28167868	28167868	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021026	exon2	c.C711T	p.F237F	.	.	.
NEFH	4744	broad.mit.edu	36	22	28211820	28211820	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021076	exon3	c.G1192T	p.E398X	.	.	.
NF2	4771	broad.mit.edu	36	22	28365126	28365126	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000268	exon3	c.C288A	p.F96L	.	.	.
NF2	4771	broad.mit.edu	36	22	28399405	28399405	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000268	exon12	c.C1270T	p.R424C	.	.	.
ASCC2	84164	broad.mit.edu	36	22	28516483	28516483	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032204	exon19	c.C2077T	p.R693C	.	.	.
HORMAD2	150280	broad.mit.edu	36	22	28847626	28847626	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152510	exon9	c.G416T	p.S139I	.	.	.
OSM	5008	broad.mit.edu	36	22	28990019	28990019	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020530	exon3	c.A612G	p.S204S	.	.	.
SF3A1	10291	broad.mit.edu	36	22	29065169	29065169	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005409	exon10	c.G1252A	p.A418T	.	.	.
CCDC157	550631	broad.mit.edu	36	22	29095460	29095460	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001017437	exon4	c.G288T	p.E96D	.	.	.
SEC14L4	284904	broad.mit.edu	36	22	29218505	29218505	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001161368	exon8	c.C620T	p.S207L	.	.	.
GAL3ST1	9514	broad.mit.edu	36	22	29281608	29281608	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004861	exon4	c.C604T	p.R202C	.	.	.
MORC2	22880	broad.mit.edu	36	22	29662542	29662542	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014941	exon18	c.A1507G	p.T503A	.	.	.
LIMK2	3985	broad.mit.edu	36	22	29993018	29993018	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005569	exon9	c.C1090T	p.R364X	.	.	.
PATZ1	23598	broad.mit.edu	36	22	30053166	30053166	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032050	exon4	c.T1637C	p.V546A	.	.	.
SFI1	9814	broad.mit.edu	36	22	30257078	30257078	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014775	exon4	c.C301T	p.R101X	.	.	.
PISD	23761	broad.mit.edu	36	22	30345711	30345711	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014338	exon9	c.G1015A	p.E339K	.	.	.
DEPDC5	9681	broad.mit.edu	36	22	30518763	30518763	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014662	exon12	c.C727T	p.R243X	.	.	.
DEPDC5	9681	broad.mit.edu	36	22	30545144	30545144	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014662	exon22	c.C1803T	p.F601F	.	.	.
DEPDC5	9681	broad.mit.edu	36	22	30548747	30548747	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014662	exon24	c.C2075A	p.S692Y	.	.	.
RFPL2	10739	broad.mit.edu	36	22	30916963	30916963	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001159545	exon4	c.T663G	p.D221E	.	.	.
BPIL2	254240	broad.mit.edu	36	22	31161742	31161742	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174932	exon8	c.C873A	p.S291S	.	.	.
BPIL2	254240	broad.mit.edu	36	22	31171835	31171835	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174932	exon4	c.G523T	p.E175X	.	.	.
FBXO7	25793	broad.mit.edu	36	22	31224280	31224280	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001033024	exon9	c.C1095T	p.I365I	.	.	.
TIMP3	7078	broad.mit.edu	36	22	31585356	31585356	+	Missense_Mutation	SNP	G	T	T	rs1804709	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000362	exon5	c.G628T	p.D210Y	.	.	.
LARGE	9215	broad.mit.edu	36	22	32063727	32063727	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133642	exon10	c.C1192T	p.R398C	.	.	.
HMGXB4	10042	broad.mit.edu	36	22	33991203	33991203	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001003681	exon5	c.C822T	p.F274F	.	.	.
MCM5	4174	broad.mit.edu	36	22	34142760	34142760	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006739	exon12	c.G1543A	p.D515N	.	.	.
MCM5	4174	broad.mit.edu	36	22	34149257	34149257	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006739	exon16	c.G2026A	p.E676K	.	.	.
APOL5	80831	broad.mit.edu	36	22	34452244	34452244	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030642	exon3	c.T183C	p.N61N	.	.	.
APOL2	23780	broad.mit.edu	36	22	34957364	34957364	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030882	exon4	c.G105A	p.W35X	.	.	.
MYH9	4627	broad.mit.edu	36	22	35014324	35014324	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002473	exon34	c.G4852T	p.D1618Y	.	.	.
MYH9	4627	broad.mit.edu	36	22	35019456	35019456	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002473	exon30	c.G3960T	p.E1320D	.	.	.
CACNG2	10369	broad.mit.edu	36	22	35292391	35292391	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006078	exon3	c.C391T	p.R131X	.	.	.
CACNG2	10369	broad.mit.edu	36	22	35428552	35428552	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006078	exon1	c.C16T	p.R6X	.	.	.
TMPRSS6	164656	broad.mit.edu	36	22	35829231	35829231	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153609	exon2	c.C200T	p.S67L	.	.	.
C1QTNF6	114904	broad.mit.edu	36	22	35908515	35908515	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182486	exon3	c.G496A	p.E166K	.	.	.
SH3BP1	23616	broad.mit.edu	36	22	36391590	36391590	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020315	exon2	c.C657T	p.F219F	.	.	.
TRIOBP	11078	broad.mit.edu	36	22	36451714	36451714	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039141	exon7	c.G3205T	p.D1069Y	.	.	.
TRIOBP	11078	broad.mit.edu	36	22	36480864	36480864	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039141	exon13	c.C5414T	p.S1805L	.	.	.
C22orf23	84645	broad.mit.edu	36	22	36673371	36673371	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032561	exon4	c.G212T	p.R71I	.	.	.
PLA2G6	8398	broad.mit.edu	36	22	36846826	36846826	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199562	exon11	c.G1466A	p.R489H	.	.	.
CSNK1E	1454	broad.mit.edu	36	22	37024737	37024737	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001894	exon7	c.C885T	p.F295F	.	.	.
TOMM22	56993	broad.mit.edu	36	22	37408294	37408294	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020243	exon2	c.G138T	p.E46D	.	.	.
APOBEC3D	140564	broad.mit.edu	36	22	37751575	37751575	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152426	exon4	c.C558T	p.F186F	.	.	.
APOBEC3F	200316	broad.mit.edu	36	22	37775446	37775446	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145298	exon5	c.C637T	p.R213W	.	.	.
APOBEC3G	60489	broad.mit.edu	36	22	37806991	37806991	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021822	exon3	c.C279A	p.S93S	.	.	.
APOBEC3G	60489	broad.mit.edu	36	22	37812452	37812452	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021822	exon6	c.A958G	p.R320G	.	.	.
MGAT3	4248	broad.mit.edu	36	22	38214204	38214204	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098270	exon1	c.G906A	p.S302S	.	.	.
CACNA1I	8911	broad.mit.edu	36	22	38408539	38408539	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021096	exon35	c.G5757T	p.E1919D	.	.	.
ENTHD1	150350	broad.mit.edu	36	22	38469776	38469776	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152512	exon7	c.G1678A	p.A560T	.	.	.
ENTHD1	150350	broad.mit.edu	36	22	38470161	38470161	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152512	exon7	c.G1293T	p.E431D	.	.	.
ENTHD1	150350	broad.mit.edu	36	22	38561872	38561872	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152512	exon4	c.C630T	p.C210C	.	.	.
GRAP2	9402	broad.mit.edu	36	22	38681834	38681834	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004810	exon3	c.G144T	p.K48N	.	.	.
GRAP2	9402	broad.mit.edu	36	22	38686041	38686041	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004810	exon4	c.G207T	p.E69D	.	.	.
GRAP2	9402	broad.mit.edu	36	22	38692047	38692047	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004810	exon5	c.G398T	p.R133M	.	.	.
TNRC6B	23112	broad.mit.edu	36	22	38992734	38992734	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015088	exon5	c.C2554T	p.R852X	.	.	.
ADSL	158	broad.mit.edu	36	22	39075844	39075844	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000026	exon2	c.C216T	p.I72I	.	.	.
SGSM3	27352	broad.mit.edu	36	22	39131093	39131093	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015705	exon7	c.C477T	p.I159I	.	.	.
MCHR1	2847	broad.mit.edu	36	22	39407272	39407272	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005297	exon2	c.G663A	p.T221T	.	.	.
SLC25A17	10478	broad.mit.edu	36	22	39518612	39518612	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006358	exon4	c.G197A	p.R66Q	.	.	.
XPNPEP3	63929	broad.mit.edu	36	22	39635105	39635105	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022098	exon6	c.A889G	p.I297V	.	.	.
EP300	2033	broad.mit.edu	36	22	39875849	39875849	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001429	exon14	c.C2518A	p.P840T	.	.	.
EP300	2033	broad.mit.edu	36	22	39904782	39904782	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001429	exon31	c.C7121A	p.S2374Y	.	.	.
ZC3H7B	23264	broad.mit.edu	36	22	40072060	40072060	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017590	exon14	c.G1567A	p.D523N	.	.	.
PMM1	5372	broad.mit.edu	36	22	40309924	40309924	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002676	exon5	c.C459A	p.F153L	.	.	.
XRCC6	2547	broad.mit.edu	36	22	40362714	40362714	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001469	exon5	c.G583T	p.D195Y	.	.	.
MEI1	150365	broad.mit.edu	36	22	40471853	40471853	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152513	exon14	c.G1557T	p.Q519H	.	.	.
CCDC134	79879	broad.mit.edu	36	22	40535858	40535858	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024821	exon3	c.G133T	p.E45X	.	.	.
TCF20	6942	broad.mit.edu	36	22	40936687	40936687	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005650	exon1	c.G4569A	p.P1523P	.	.	.
TCF20	6942	broad.mit.edu	36	22	40939594	40939594	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005650	exon1	c.G1662T	p.E554D	.	.	.
POLDIP3	84271	broad.mit.edu	36	22	41328919	41328919	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178136	exon2	c.G251A	p.R84Q	.	.	.
PACSIN2	11252	broad.mit.edu	36	22	41617023	41617023	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001184971	exon4	c.C327T	p.F109F	.	.	.
SCUBE1	80274	broad.mit.edu	36	22	42065082	42065082	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173050	exon2	c.C192T	p.G64G	.	.	.
MPPED1	758	broad.mit.edu	36	22	42160973	42160973	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001044370	exon3	c.G300A	p.S100S	.	.	.
EFCAB6	64800	broad.mit.edu	36	22	42282258	42282258	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198856	exon25	c.C3016A	p.P1006T	.	.	.
EFCAB6	64800	broad.mit.edu	36	22	42303638	42303638	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198856	exon24	c.C2836A	p.L946I	.	.	.
EFCAB6	64800	broad.mit.edu	36	22	42327365	42327365	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198856	exon21	c.C2337A	p.F779L	.	.	.
EFCAB6	64800	broad.mit.edu	36	22	42362361	42362361	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198856	exon16	c.C1596T	p.F532F	.	.	.
EFCAB6	64800	broad.mit.edu	36	22	42405343	42405343	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198856	exon11	c.C829T	p.R277X	.	.	.
EFCAB6	64800	broad.mit.edu	36	22	42414762	42414762	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198856	exon9	c.G608A	p.W203X	.	.	.
EFCAB6	64800	broad.mit.edu	36	22	42438810	42438810	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198856	exon8	c.A453G	p.E151E	.	.	.
EFCAB6	64800	broad.mit.edu	36	22	42463137	42463137	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198856	exon5	c.C121T	p.R41X	.	.	.
PNPLA3	80339	broad.mit.edu	36	22	42673415	42673415	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025225	exon9	c.G1266A	p.E422E	.	.	.
LDOC1L	84247	broad.mit.edu	36	22	43271654	43271654	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032287	exon2	c.G447T	p.E149D	.	.	.
SMC1B	27127	broad.mit.edu	36	22	44173761	44173761	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_148674	exon6	c.G991T	p.D331Y	.	.	.
FBLN1	2192	broad.mit.edu	36	22	44309880	44309880	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006487	exon8	c.T921C	p.I307I	.	.	.
FBLN1	2192	broad.mit.edu	36	22	44315858	44315858	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006487	exon9	c.G1008T	p.K336N	.	.	.
FBLN1	2192	broad.mit.edu	36	22	44339440	44339440	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006485	exon15	c.G1710T	p.K570N	.	.	.
PPARA	5465	broad.mit.edu	36	22	45006766	45006766	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005036	exon8	c.C1125A	p.I375I	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45031757	45031757	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006071	exon1	c.G6127T	p.V2043F	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45031989	45031989	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006071	exon1	c.C5895A	p.I1965I	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45032073	45032073	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006071	exon1	c.C5811A	p.V1937V	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45033496	45033496	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006071	exon1	c.C4388A	p.S1463Y	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45033788	45033788	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006071	exon1	c.C4096A	p.L1366I	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45034631	45034631	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006071	exon1	c.C3253T	p.R1085C	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45035489	45035489	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006071	exon1	c.C2395T	p.R799X	.	.	.
TTC38	55020	broad.mit.edu	36	22	45049943	45049943	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017931	exon5	c.G500A	p.R167Q	.	.	.
GTSE1	51512	broad.mit.edu	36	22	45090968	45090968	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016426	exon7	c.C1427A	p.S476Y	.	.	.
GTSE1	51512	broad.mit.edu	36	22	45101146	45101146	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016426	exon9	c.C1655T	p.A552V	.	.	.
GRAMD4	23151	broad.mit.edu	36	22	45401459	45401459	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015124	exon1	c.C99T	p.S33S	.	.	.
ZBED4	9889	broad.mit.edu	36	22	48663404	48663404	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014838	exon2	c.T90C	p.D30D	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48889255	48889255	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164104	exon5	c.G598T	p.E200X	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48897825	48897825	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164104	exon9	c.G1372A	p.E458K	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48906083	48906083	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164104	exon11	c.G1705A	p.E569K	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48906805	48906805	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164104	exon12	c.G1795A	p.E599K	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48914612	48914612	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164104	exon14	c.G1960T	p.G654C	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48931293	48931293	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164104	exon21	c.C2730T	p.I910I	.	.	.
TUBGCP6	85378	broad.mit.edu	36	22	49024690	49024690	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020461	exon1	c.C326A	p.S109Y	.	.	.
SBF1	6305	broad.mit.edu	36	22	49247537	49247537	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002972	exon19	c.G2359A	p.D787N	.	.	.
PPAN-P2RY11	692312	broad.mit.edu	36	19	10085713	10085713	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002566	exon2	c.C424T	p.R142X	.	.	.
PPAN-P2RY11	692312	broad.mit.edu	36	19	10086102	10086102	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002566	exon2	c.C813T	p.N271N	.	.	.
DNMT1	1786	broad.mit.edu	36	19	10126724	10126724	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130823	exon20	c.G1501A	p.E501K	.	.	.
DNMT1	1786	broad.mit.edu	36	19	10144797	10144797	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130823	exon9	c.G737A	p.R246H	.	.	.
ICAM4	3386	broad.mit.edu	36	19	10259694	10259694	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001544	exon3	c.G730A	p.G244S	.	.	.
ICAM5	7087	broad.mit.edu	36	19	10265499	10265499	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003259	exon7	c.G1591T	p.E531X	.	.	.
ATG4D	84971	broad.mit.edu	36	19	10516657	10516657	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032885	exon3	c.A344G	p.D115G	.	.	.
ILF3	3609	broad.mit.edu	36	19	10660332	10660332	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012218	exon19	c.C2529A	p.G843G	.	.	.
DNM2	1785	broad.mit.edu	36	19	10765493	10765493	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001190716	exon8	c.C1090T	p.R364C	.	.	.
DNM2	1785	broad.mit.edu	36	19	10767768	10767768	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001190716	exon10	c.G1228A	p.E410K	.	.	.
DNM2	1785	broad.mit.edu	36	19	10796751	10796751	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001190716	exon18	c.G1912A	p.A638T	.	.	.
DNM2	1785	broad.mit.edu	36	19	10800861	10800861	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190716	exon19	c.C2208T	p.I736I	.	.	.
SMARCA4	6597	broad.mit.edu	36	19	11013012	11013012	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003072	exon30	c.C4200T	p.I1400I	.	.	.
LDLR	3949	broad.mit.edu	36	19	11085281	11085281	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001195802	exon9	c.G1066A	p.D356N	.	.	.
ZNF653	115950	broad.mit.edu	36	19	11470150	11470150	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138783	exon2	c.C304T	p.P102S	.	.	.
ZNF627	199692	broad.mit.edu	36	19	11589118	11589118	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145295	exon4	c.G800A	p.R267Q	.	.	.
ZNF627	199692	broad.mit.edu	36	19	11589370	11589370	+	Missense_Mutation	SNP	G	A	A	rs72489416	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145295	exon4	c.G1052A	p.R351Q	.	.	.
ZNF627	199692	broad.mit.edu	36	19	11589453	11589453	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145295	exon4	c.C1135T	p.R379X	.	.	.
ZNF823	55552	broad.mit.edu	36	19	11694351	11694351	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080493	exon4	c.A998C	p.K333T	.	.	.
ZNF823	55552	broad.mit.edu	36	19	11694825	11694825	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080493	exon4	c.C524A	p.S175Y	.	.	.
ZNF823	55552	broad.mit.edu	36	19	11695017	11695017	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080493	exon4	c.C332T	p.S111L	.	.	.
ZNF491	126069	broad.mit.edu	36	19	11778528	11778528	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152356	exon3	c.C760T	p.R254C	.	.	.
ZNF491	126069	broad.mit.edu	36	19	11778796	11778796	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152356	exon3	c.G1028A	p.R343Q	.	.	.
ZNF491	126069	broad.mit.edu	36	19	11778883	11778883	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152356	exon3	c.G1115T	p.R372I	.	.	.
ZNF440	126070	broad.mit.edu	36	19	11803750	11803750	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152357	exon4	c.A759C	p.E253D	.	.	.
ZNF440	126070	broad.mit.edu	36	19	11804750	11804750	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152357	exon4	c.G1759A	p.E587K	.	.	.
ZNF439	90594	broad.mit.edu	36	19	11838403	11838403	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152262	exon2	c.G227T	p.R76I	.	.	.
ZNF439	90594	broad.mit.edu	36	19	11839387	11839387	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152262	exon3	c.G503A	p.R168K	.	.	.
ZNF439	90594	broad.mit.edu	36	19	11839601	11839601	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152262	exon3	c.G717T	p.E239D	.	.	.
ZNF439	90594	broad.mit.edu	36	19	11839669	11839669	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152262	exon3	c.G785T	p.R262I	.	.	.
ZNF439	90594	broad.mit.edu	36	19	11839921	11839921	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152262	exon3	c.G1037T	p.R346I	.	.	.
ZNF700	90592	broad.mit.edu	36	19	11921000	11921000	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144566	exon4	c.G1161T	p.E387D	.	.	.
ZNF433	163059	broad.mit.edu	36	19	11989714	11989714	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080411	exon3	c.C177T	p.Y59Y	.	.	.
ZNF20	7568	broad.mit.edu	36	19	12107324	12107324	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021143	exon3	c.G191T	p.R64I	.	.	.
ZNF625	90589	broad.mit.edu	36	19	12117140	12117140	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145233	exon4	c.C893T	p.S298L	.	.	.
ZNF625	90589	broad.mit.edu	36	19	12117527	12117527	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145233	exon4	c.G506A	p.R169Q	.	.	.
ZNF136	7695	broad.mit.edu	36	19	12158659	12158659	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003437	exon4	c.C466T	p.R156X	.	.	.
ZNF44	51710	broad.mit.edu	36	19	12244305	12244305	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016264	exon4	c.G1765T	p.E589X	.	.	.
ZNF44	51710	broad.mit.edu	36	19	12244447	12244447	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016264	exon4	c.C1623A	p.F541L	.	.	.
ZNF563	147837	broad.mit.edu	36	19	12290921	12290921	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145276	exon4	c.G918T	p.E306D	.	.	.
ZNF563	147837	broad.mit.edu	36	19	12294451	12294451	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145276	exon2	c.G78T	p.K26N	.	.	.
ZNF442	79973	broad.mit.edu	36	19	12322065	12322065	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030824	exon6	c.C1334A	p.S445Y	.	.	.
ZNF442	79973	broad.mit.edu	36	19	12322221	12322221	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030824	exon6	c.G1178A	p.R393Q	.	.	.
ZNF442	79973	broad.mit.edu	36	19	12322293	12322293	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030824	exon6	c.G1106T	p.R369I	.	.	.
ZNF442	79973	broad.mit.edu	36	19	12322473	12322473	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030824	exon6	c.G926A	p.R309Q	.	.	.
ZNF799	90576	broad.mit.edu	36	19	12362625	12362625	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080821	exon4	c.G1587T	p.E529D	.	.	.
ZNF443	10224	broad.mit.edu	36	19	12402048	12402048	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005815	exon4	c.G1938T	p.E646D	.	.	.
ZNF443	10224	broad.mit.edu	36	19	12402399	12402399	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005815	exon4	c.G1587T	p.E529D	.	.	.
ZNF443	10224	broad.mit.edu	36	19	12402592	12402592	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005815	exon4	c.G1394A	p.R465Q	.	.	.
ZNF443	10224	broad.mit.edu	36	19	12402806	12402806	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005815	exon4	c.G1180T	p.E394X	.	.	.
ZNF443	10224	broad.mit.edu	36	19	12402984	12402984	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005815	exon4	c.G1002T	p.E334D	.	.	.
ZNF709	163051	broad.mit.edu	36	19	12436907	12436907	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152601	exon4	c.G829T	p.E277X	.	.	.
ZNF709	163051	broad.mit.edu	36	19	12438565	12438565	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152601	exon2	c.G103T	p.E35X	.	.	.
ZNF490	57474	broad.mit.edu	36	19	12552932	12552932	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020714	exon5	c.G957A	p.T319T	.	.	.
ZNF490	57474	broad.mit.edu	36	19	12555260	12555260	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020714	exon3	c.G273T	p.K91N	.	.	.
MAN2B1	4125	broad.mit.edu	36	19	12619346	12619346	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000528	exon22	c.G2731A	p.E911K	.	.	.
RNASEH2A	10535	broad.mit.edu	36	19	12779087	12779087	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006397	exon3	c.C267T	p.V89V	.	.	.
MAST1	22983	broad.mit.edu	36	19	12819769	12819769	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014975	exon7	c.C672A	p.I224I	.	.	.
GCDH	2639	broad.mit.edu	36	19	12863653	12863653	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013976	exon4	c.C136T	p.P46S	.	.	.
GCDH	2639	broad.mit.edu	36	19	12865318	12865318	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013976	exon6	c.C356T	p.S119L	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13200558	13200558	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001127221	exon37	c.C5583A	p.P1861P	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13202002	13202002	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174080	exon36	c.G5426A	p.R1809H	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13203526	13203526	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174080	exon35	c.C5402A	p.S1801Y	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13206847	13206847	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174080	exon34	c.T5141G	p.V1714G	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13226938	13226938	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174080	exon29	c.G4729A	p.A1577T	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13247702	13247702	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174080	exon24	c.C3954A	p.F1318L	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13280321	13280321	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174080	exon13	c.G1693A	p.E565K	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13284557	13284557	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174080	exon12	c.G1597A	p.E533K	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13331495	13331495	+	Silent	SNP	G	A	A	rs17846910	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174080	exon6	c.C903T	p.F301F	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13337147	13337147	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174080	exon5	c.C768T	p.C256C	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13337262	13337262	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174080	exon5	c.C653T	p.S218L	.	.	.
CC2D1A	54862	broad.mit.edu	36	19	13898824	13898824	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017721	exon21	c.G2159A	p.R720H	.	.	.
CD97	976	broad.mit.edu	36	19	14369711	14369711	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001025160	exon7	c.C636A	p.F212L	.	.	.
CD97	976	broad.mit.edu	36	19	14378769	14378769	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001025160	exon16	c.C2057T	p.A686V	.	.	.
PKN1	5585	broad.mit.edu	36	19	14441255	14441255	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_213560	exon16	c.C2097T	p.F699F	.	.	.
CLEC17A	388512	broad.mit.edu	36	19	14567090	14567090	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207390	exon7	c.G357T	p.V119V	.	.	.
EMR3	84658	broad.mit.edu	36	19	14626944	14626944	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032571	exon6	c.C427A	p.L143I	.	.	.
ZNF333	84449	broad.mit.edu	36	19	14678559	14678559	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032433	exon7	c.G485A	p.R162H	.	.	.
ZNF333	84449	broad.mit.edu	36	19	14687244	14687244	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032433	exon8	c.G562T	p.E188X	.	.	.
ZNF333	84449	broad.mit.edu	36	19	14690226	14690226	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032433	exon12	c.G1087A	p.D363N	.	.	.
EMR2	30817	broad.mit.edu	36	19	14724176	14724176	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152920	exon14	c.C1573A	p.L525I	.	.	.
EMR2	30817	broad.mit.edu	36	19	14737372	14737372	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152920	exon8	c.C645A	p.F215L	.	.	.
EMR2	30817	broad.mit.edu	36	19	14744285	14744285	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152920	exon5	c.C224T	p.S75L	.	.	.
CASP14	23581	broad.mit.edu	36	19	15025395	15025395	+	Missense_Mutation	SNP	C	T	T	rs61731993	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012114	exon3	c.C130T	p.R44W	.	.	.
CASP14	23581	broad.mit.edu	36	19	15025711	15025711	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012114	exon4	c.G345T	p.K115N	.	.	.
OR1I1	126370	broad.mit.edu	36	19	15059262	15059262	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004713	exon1	c.C386T	p.P129L	.	.	.
OR1I1	126370	broad.mit.edu	36	19	15059473	15059473	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004713	exon1	c.C597T	p.I199I	.	.	.
SYDE1	85360	broad.mit.edu	36	19	15085675	15085675	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033025	exon8	c.C2109T	p.F703F	.	.	.
BRD4	23476	broad.mit.edu	36	19	15216563	15216563	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_058243	exon12	c.G2169A	p.P723P	.	.	.
PGLYRP2	114770	broad.mit.edu	36	19	15448015	15448015	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052890	exon2	c.C466T	p.P156S	.	.	.
PGLYRP2	114770	broad.mit.edu	36	19	15448160	15448160	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052890	exon2	c.A321C	p.E107D	.	.	.
CYP4F22	126410	broad.mit.edu	36	19	15501536	15501536	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173483	exon4	c.C239T	p.A80V	.	.	.
OR10H1	26539	broad.mit.edu	36	19	15778911	15778911	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013940	exon1	c.G937T	p.E313X	.	.	.
OR10H4	126541	broad.mit.edu	36	19	15921764	15921764	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004465	exon1	c.C947T	p.S316F	.	.	.
TPM4	7171	broad.mit.edu	36	19	16053751	16053751	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145160	exon3	c.G269A	p.R90Q	.	.	.
EPS15L1	58513	broad.mit.edu	36	19	16333601	16333601	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021235	exon23	c.G2575T	p.D859Y	.	.	.
EPS15L1	58513	broad.mit.edu	36	19	16374194	16374194	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021235	exon16	c.A1729G	p.T577A	.	.	.
C19orf44	84167	broad.mit.edu	36	19	16473252	16473252	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032207	exon2	c.G649T	p.E217X	.	.	.
NWD1	284434	broad.mit.edu	36	19	16760834	16760834	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007525	exon13	c.G2773A	p.A925T	.	.	.
NWD1	284434	broad.mit.edu	36	19	16760951	16760951	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007525	exon13	c.C2890A	p.L964I	.	.	.
CPAMD8	27151	broad.mit.edu	36	19	16899831	16899831	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015692	exon25	c.G3499A	p.A1167T	.	.	.
CPAMD8	27151	broad.mit.edu	36	19	16901037	16901037	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015692	exon24	c.C3000A	p.I1000I	.	.	.
CPAMD8	27151	broad.mit.edu	36	19	16947913	16947913	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015692	exon16	c.G1948A	p.D650N	.	.	.
CPAMD8	27151	broad.mit.edu	36	19	16952315	16952315	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015692	exon14	c.C1718A	p.S573Y	.	.	.
HAUS8	93323	broad.mit.edu	36	19	17024678	17024678	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001011699	exon10	c.G883A	p.E295K	.	.	.
NR2F6	2063	broad.mit.edu	36	19	17204227	17204227	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005234	exon4	c.G1149T	p.E383D	.	.	.
USHBP1	83878	broad.mit.edu	36	19	17227231	17227231	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031941	exon10	c.G1655A	p.G552E	.	.	.
USHBP1	83878	broad.mit.edu	36	19	17231501	17231501	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031941	exon6	c.G809A	p.R270H	.	.	.
ANKLE1	126549	broad.mit.edu	36	19	17255193	17255193	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152363	exon5	c.C620T	p.A207V	.	.	.
PLVAP	83483	broad.mit.edu	36	19	17337358	17337358	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031310	exon3	c.C916T	p.R306C	.	.	.
PLVAP	83483	broad.mit.edu	36	19	17337993	17337993	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031310	exon2	c.G381A	p.T127T	.	.	.
BST2	684	broad.mit.edu	36	19	17375561	17375561	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004335	exon4	c.C486T	p.S162S	.	.	.
FAM125A	93343	broad.mit.edu	36	19	17395604	17395604	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138401	exon6	c.C636A	p.I212I	.	.	.
NXNL1	115861	broad.mit.edu	36	19	17432367	17432367	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138454	exon1	c.G312T	p.E104D	.	.	.
SLC27A1	376497	broad.mit.edu	36	19	17476280	17476280	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198580	exon12	c.G1800A	p.Q600Q	.	.	.
FAM129C	199786	broad.mit.edu	36	19	17504117	17504117	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173544	exon4	c.C325T	p.R109W	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17607859	17607859	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080421	exon25	c.G3189T	p.K1063N	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17607965	17607965	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080421	exon25	c.C3083T	p.A1028V	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17611661	17611661	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080421	exon22	c.C2844A	p.L948L	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17613351	17613351	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080421	exon20	c.C2487T	p.F829F	.	.	.
MAP1S	55201	broad.mit.edu	36	19	17692830	17692830	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018174	exon2	c.C204A	p.F68L	.	.	.
B3GNT3	10331	broad.mit.edu	36	19	17783925	17783925	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014256	exon3	c.C1113T	p.I371I	.	.	.
SLC5A5	6528	broad.mit.edu	36	19	17852703	17852703	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000453	exon8	c.C999T	p.F333F	.	.	.
SLC5A5	6528	broad.mit.edu	36	19	17860152	17860152	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000453	exon13	c.C1539T	p.D513D	.	.	.
KIAA1683	80726	broad.mit.edu	36	19	18237994	18237994	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025249	exon3	c.G1356T	p.K452N	.	.	.
LRRC25	126364	broad.mit.edu	36	19	18368389	18368389	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145256	exon1	c.G385T	p.D129Y	.	.	.
ELL	8178	broad.mit.edu	36	19	18417072	18417072	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006532	exon11	c.C1711T	p.R571X	.	.	.
FKBP8	23770	broad.mit.edu	36	19	18511482	18511482	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012181	exon3	c.C341T	p.S114L	.	.	.
UPF1	5976	broad.mit.edu	36	19	18835253	18835253	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002911	exon19	c.C2607T	p.G869G	.	.	.
SUGP2	10147	broad.mit.edu	36	19	18996606	18996606	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014884	exon3	c.C1551T	p.F517F	.	.	.
SUGP2	10147	broad.mit.edu	36	19	19002819	19002819	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014884	exon2	c.G62A	p.R21Q	.	.	.
TMEM161A	54929	broad.mit.edu	36	19	19093453	19093453	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017814	exon8	c.C681T	p.I227I	.	.	.
TM6SF2	53345	broad.mit.edu	36	19	19242886	19242886	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001524	exon2	c.C144T	p.F48F	.	.	.
ZNF101	94039	broad.mit.edu	36	19	19649768	19649768	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033204	exon2	c.G99A	p.T33T	.	.	.
ZNF101	94039	broad.mit.edu	36	19	19651292	19651292	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033204	exon4	c.G494A	p.R165Q	.	.	.
ZNF14	7561	broad.mit.edu	36	19	19683283	19683283	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021030	exon4	c.C1807T	p.R603X	.	.	.
ZNF14	7561	broad.mit.edu	36	19	19683535	19683535	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021030	exon4	c.C1555T	p.R519X	.	.	.
ZNF253	56242	broad.mit.edu	36	19	19863857	19863857	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021047	exon4	c.A801C	p.R267R	.	.	.
ZNF93	81931	broad.mit.edu	36	19	19905592	19905592	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031218	exon4	c.G828T	p.K276N	.	.	.
MKNK2	2872	broad.mit.edu	36	19	1992073	1992073	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017572	exon12	c.C1076T	p.A359V	.	.	.
ZNF486	90649	broad.mit.edu	36	19	20169252	20169252	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052852	exon4	c.A733G	p.K245E	.	.	.
ZNF626	199777	broad.mit.edu	36	19	20599189	20599189	+	Missense_Mutation	SNP	C	A	A	rs4809075	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001076675	exon4	c.G1334T	p.R445I	.	.	.
ZNF85	7639	broad.mit.edu	36	19	20924501	20924501	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003429	exon4	c.T1341G	p.I447M	.	.	.
ZNF430	80264	broad.mit.edu	36	19	21032105	21032105	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172671	exon5	c.G1148A	p.R383Q	.	.	.
ZNF714	148206	broad.mit.edu	36	19	21092540	21092540	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182515	exon5	c.C1230A	p.N410K	.	.	.
ZNF431	170959	broad.mit.edu	36	19	21141013	21141013	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133473	exon3	c.C132A	p.F44L	.	.	.
ZNF431	170959	broad.mit.edu	36	19	21158373	21158373	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133473	exon5	c.G1427T	p.R476I	.	.	.
ZNF708	7562	broad.mit.edu	36	19	21269303	21269303	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021269	exon4	c.G305A	p.R102K	.	.	.
ZNF493	284443	broad.mit.edu	36	19	21397933	21397933	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175910	exon2	c.G248A	p.R83Q	.	.	.
ZNF493	284443	broad.mit.edu	36	19	21399413	21399413	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175910	exon2	c.G1728T	p.K576N	.	.	.
ZNF429	353088	broad.mit.edu	36	19	21511078	21511078	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001415	exon4	c.G383T	p.G128V	.	.	.
ZNF429	353088	broad.mit.edu	36	19	21511852	21511852	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001415	exon4	c.G1157A	p.R386Q	.	.	.
ZNF43	7594	broad.mit.edu	36	19	21783410	21783410	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003423	exon4	c.G1269T	p.E423D	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21946262	21946262	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007153	exon4	c.G3414T	p.E1138D	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21946866	21946866	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007153	exon4	c.A2810G	p.K937R	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21947197	21947197	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007153	exon4	c.C2479A	p.H827N	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21947466	21947466	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007153	exon4	c.C2210A	p.T737N	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21947561	21947561	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007153	exon4	c.C2115A	p.S705S	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21949057	21949057	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007153	exon4	c.G619A	p.G207S	.	.	.
ZNF257	113835	broad.mit.edu	36	19	22063154	22063154	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033468	exon4	c.G762T	p.E254D	.	.	.
ZNF257	113835	broad.mit.edu	36	19	22063222	22063222	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033468	exon4	c.G830T	p.R277I	.	.	.
ZNF257	113835	broad.mit.edu	36	19	22063357	22063357	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033468	exon4	c.G965A	p.G322D	.	.	.
ZNF257	113835	broad.mit.edu	36	19	22063996	22063996	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033468	exon4	c.G1604T	p.R535I	.	.	.
ZNF676	163223	broad.mit.edu	36	19	22154918	22154918	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001411	exon3	c.G1441T	p.E481X	.	.	.
ZNF98	148198	broad.mit.edu	36	19	22366383	22366383	+	Silent	SNP	A	C	C	rs74169607	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098626	exon4	c.T1494G	p.A498A	.	.	.
ZNF98	148198	broad.mit.edu	36	19	22377476	22377476	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098626	exon3	c.G208T	p.E70X	.	.	.
ZNF98	148198	broad.mit.edu	36	19	22378119	22378119	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098626	exon2	c.C66T	p.F22F	.	.	.
ZNF492	57615	broad.mit.edu	36	19	22639397	22639397	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020855	exon4	c.G1086T	p.E362D	.	.	.
ZNF492	57615	broad.mit.edu	36	19	22639785	22639785	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020855	exon4	c.C1474T	p.L492F	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22730897	22730897	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080409	exon8	c.C3061A	p.L1021I	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22734066	22734066	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080409	exon4	c.G548T	p.R183I	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22734210	22734210	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080409	exon4	c.G404T	p.R135I	.	.	.
ZNF91	7644	broad.mit.edu	36	19	23334965	23334965	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003430	exon4	c.G2656T	p.E886X	.	.	.
ZNF91	7644	broad.mit.edu	36	19	23336596	23336596	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003430	exon4	c.G1025T	p.R342I	.	.	.
ZNF254	9534	broad.mit.edu	36	19	24081248	24081248	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203282	exon3	c.G216A	p.W72X	.	.	.
ZNF254	9534	broad.mit.edu	36	19	24102148	24102148	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_203282	exon4	c.C1506A	p.S502S	.	.	.
MIER2	54531	broad.mit.edu	36	19	259859	259859	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017550	exon11	c.G1051A	p.D351N	.	.	.
MIER2	54531	broad.mit.edu	36	19	277596	277596	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017550	exon6	c.C496T	p.R166C	.	.	.
ZNF554	115196	broad.mit.edu	36	19	2785264	2785264	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102651	exon5	c.G1031T	p.R344I	.	.	.
ZNF554	115196	broad.mit.edu	36	19	2785684	2785684	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102651	exon5	c.G1451T	p.R484I	.	.	.
ZNF555	148254	broad.mit.edu	36	19	2804045	2804045	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172775	exon4	c.C979T	p.R327X	.	.	.
ZNF555	148254	broad.mit.edu	36	19	2804297	2804297	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172775	exon4	c.C1231T	p.R411X	.	.	.
ZNF556	80032	broad.mit.edu	36	19	2829237	2829237	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024967	exon4	c.C1281T	p.C427C	.	.	.
ZNF57	126295	broad.mit.edu	36	19	2866584	2866584	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173480	exon2	c.C68A	p.S23Y	.	.	.
ZNF77	58492	broad.mit.edu	36	19	2885713	2885713	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021217	exon4	c.G412A	p.E138K	.	.	.
ZNF77	58492	broad.mit.edu	36	19	2887570	2887570	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021217	exon3	c.G263T	p.R88I	.	.	.
TLE6	79816	broad.mit.edu	36	19	2938915	2938915	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001143986	exon10	c.C645A	p.A215A	.	.	.
UQCRFS1	7386	broad.mit.edu	36	19	34390712	34390712	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006003	exon2	c.C408T	p.F136F	.	.	.
CCNE1	898	broad.mit.edu	36	19	35003520	35003520	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_057182	exon5	c.G489A	p.A163A	.	.	.
C19orf2	8725	broad.mit.edu	36	19	35188445	35188445	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003796	exon6	c.C507T	p.F169F	.	.	.
C19orf2	8725	broad.mit.edu	36	19	35191788	35191788	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003796	exon8	c.G723A	p.T241T	.	.	.
C19orf2	8725	broad.mit.edu	36	19	35195091	35195091	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003796	exon10	c.G1238A	p.R413Q	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36461117	36461117	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020856	exon2	c.C1422T	p.V474V	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36462245	36462245	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020856	exon2	c.G294A	p.E98E	.	.	.
PDCD5	9141	broad.mit.edu	36	19	37768608	37768608	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004708	exon4	c.G213T	p.E71D	.	.	.
ANKRD27	84079	broad.mit.edu	36	19	37829283	37829283	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032139	exon4	c.G292T	p.E98X	.	.	.
SLC7A9	11136	broad.mit.edu	36	19	38044935	38044935	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001126335	exon6	c.C633T	p.F211F	.	.	.
CCDC123	84902	broad.mit.edu	36	19	38098137	38098137	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032816	exon14	c.C1511T	p.S504L	.	.	.
RHPN2	85415	broad.mit.edu	36	19	38178790	38178790	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033103	exon11	c.G1402A	p.D468N	.	.	.
GPATCH1	55094	broad.mit.edu	36	19	38276251	38276251	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018025	exon4	c.C441A	p.L147L	.	.	.
WDR88	126248	broad.mit.edu	36	19	38331544	38331544	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173479	exon5	c.C567T	p.I189I	.	.	.
ATCAY	85300	broad.mit.edu	36	19	3861853	3861853	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033064	exon8	c.C832T	p.R278W	.	.	.
PEPD	5184	broad.mit.edu	36	19	38660833	38660833	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001166057	exon5	c.C315T	p.F105F	.	.	.
CHST8	64377	broad.mit.edu	36	19	38955560	38955560	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001127895	exon5	c.G1027A	p.D343N	.	.	.
GPI	2821	broad.mit.edu	36	19	39582486	39582486	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000175	exon17	c.C1497T	p.F499F	.	.	.
SCGBL	284402	broad.mit.edu	36	19	39777070	39777070	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001025591	exon2	c.G96A	p.A32A	.	.	.
ZNF599	148103	broad.mit.edu	36	19	39941816	39941816	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001007248	exon4	c.C1730T	p.S577L	.	.	.
ZNF599	148103	broad.mit.edu	36	19	39942152	39942152	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001007248	exon4	c.T1394C	p.V465A	.	.	.
ZNF599	148103	broad.mit.edu	36	19	39942325	39942325	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001007248	exon4	c.C1221T	p.R407R	.	.	.
ZNF599	148103	broad.mit.edu	36	19	39943160	39943160	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007248	exon4	c.A386C	p.K129T	.	.	.
ZNF30	90075	broad.mit.edu	36	19	40114624	40114624	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099437	exon3	c.T47A	p.F16Y	.	.	.
ZNF30	90075	broad.mit.edu	36	19	40126068	40126068	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099437	exon5	c.C361T	p.R121C	.	.	.
ZNF792	126375	broad.mit.edu	36	19	40140912	40140912	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175872	exon4	c.G1687A	p.E563K	.	.	.
HPN	3249	broad.mit.edu	36	19	40243413	40243413	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002151	exon10	c.C663T	p.A221A	.	.	.
HAMP	57817	broad.mit.edu	36	19	40467696	40467696	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021175	exon3	c.C166T	p.R56X	.	.	.
MAG	4099	broad.mit.edu	36	19	40483075	40483075	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199216	exon6	c.G823T	p.D275Y	.	.	.
MAG	4099	broad.mit.edu	36	19	40493300	40493300	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199216	exon9	c.G1455A	p.M485I	.	.	.
MAG	4099	broad.mit.edu	36	19	40494736	40494736	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199216	exon10	c.C1617T	p.I539I	.	.	.
CD22	933	broad.mit.edu	36	19	40515349	40515349	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001185100	exon3	c.C94A	p.L32I	.	.	.
CD22	933	broad.mit.edu	36	19	40518879	40518879	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001185100	exon4	c.G513A	p.P171P	.	.	.
FFAR2	2867	broad.mit.edu	36	19	40632669	40632669	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005306	exon1	c.G213A	p.S71S	.	.	.
FFAR2	2867	broad.mit.edu	36	19	40632822	40632822	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005306	exon1	c.G366A	p.R122R	.	.	.
FFAR2	2867	broad.mit.edu	36	19	40633365	40633365	+	Silent	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005306	exon1	c.C909G	p.G303G	.	.	.
DMKN	93099	broad.mit.edu	36	19	40683280	40683280	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033317	exon12	c.G1282A	p.D428N	.	.	.
RBM42	79171	broad.mit.edu	36	19	40817061	40817061	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024321	exon8	c.C1081T	p.R361C	.	.	.
ZBTB32	27033	broad.mit.edu	36	19	40897775	40897775	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014383	exon2	c.G407T	p.R136M	.	.	.
MLL4	9757	broad.mit.edu	36	19	40919440	40919440	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014727	exon31	c.C7169T	p.S2390L	.	.	.
C19orf55	148137	broad.mit.edu	36	19	40947667	40947667	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039887	exon6	c.C616T	p.L206F	.	.	.
NPHS1	4868	broad.mit.edu	36	19	41009360	41009360	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004646	exon29	c.G3622T	p.D1208Y	.	.	.
NPHS1	4868	broad.mit.edu	36	19	41026258	41026258	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004646	exon17	c.G2290A	p.D764N	.	.	.
TYROBP	7305	broad.mit.edu	36	19	41090486	41090486	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003332	exon2	c.C80A	p.A27D	.	.	.
CREB3L3	84699	broad.mit.edu	36	19	4122432	4122432	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032607	exon9	c.G1028A	p.G343D	.	.	.
CREB3L3	84699	broad.mit.edu	36	19	4122821	4122821	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032607	exon10	c.C1241T	p.S414L	.	.	.
WDR62	284403	broad.mit.edu	36	19	41267420	41267420	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001083961	exon12	c.G1576A	p.E526K	.	.	.
ZNF565	147929	broad.mit.edu	36	19	41365287	41365287	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152477	exon5	c.C1421T	p.P474L	.	.	.
ZNF565	147929	broad.mit.edu	36	19	41377045	41377045	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152477	exon4	c.C162T	p.V54V	.	.	.
ZFP14	57677	broad.mit.edu	36	19	41523069	41523069	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020917	exon5	c.G1499T	p.R500I	.	.	.
ZFP14	57677	broad.mit.edu	36	19	41523415	41523415	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020917	exon5	c.C1153T	p.R385C	.	.	.
ZFP14	57677	broad.mit.edu	36	19	41524021	41524021	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020917	exon5	c.C547T	p.R183C	.	.	.
ZFP82	284406	broad.mit.edu	36	19	41575659	41575659	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133466	exon5	c.G1423A	p.E475K	.	.	.
ZFP82	284406	broad.mit.edu	36	19	41590718	41590718	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133466	exon3	c.C47A	p.S16Y	.	.	.
ZNF260	339324	broad.mit.edu	36	19	41697880	41697880	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001166037	exon3	c.A101C	p.K34T	.	.	.
ZNF529	57711	broad.mit.edu	36	19	41730442	41730442	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145649	exon6	c.C858A	p.F286L	.	.	.
ZNF382	84911	broad.mit.edu	36	19	41809838	41809838	+	Missense_Mutation	SNP	G	A	A	rs4439880	by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032825	exon5	c.G1199A	p.R400K	.	.	.
ZNF382	84911	broad.mit.edu	36	19	41810006	41810006	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032825	exon5	c.G1367T	p.R456I	.	.	.
ZNF790	388536	broad.mit.edu	36	19	42001540	42001540	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206894	exon5	c.C1546A	p.L516I	.	.	.
ZNF790	388536	broad.mit.edu	36	19	42001659	42001659	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_206894	exon5	c.G1427A	p.R476K	.	.	.
ZNF790	388536	broad.mit.edu	36	19	42001782	42001782	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_206894	exon5	c.C1304T	p.S435L	.	.	.
ZNF790	388536	broad.mit.edu	36	19	42002122	42002122	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_206894	exon5	c.C964T	p.R322X	.	.	.
ZNF790	388536	broad.mit.edu	36	19	42002243	42002243	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_206894	exon5	c.T843G	p.S281S	.	.	.
ZNF790	388536	broad.mit.edu	36	19	42006426	42006426	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206894	exon3	c.G116T	p.S39I	.	.	.
ZNF345	25850	broad.mit.edu	36	19	42059901	42059901	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003419	exon3	c.G329T	p.R110I	.	.	.
ZNF345	25850	broad.mit.edu	36	19	42060573	42060573	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003419	exon3	c.G1001T	p.R334I	.	.	.
ZNF345	25850	broad.mit.edu	36	19	42060759	42060759	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003419	exon3	c.G1187T	p.R396I	.	.	.
ZNF829	374899	broad.mit.edu	36	19	42074437	42074437	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037232	exon6	c.G1096A	p.E366K	.	.	.
ZNF829	374899	broad.mit.edu	36	19	42074840	42074840	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037232	exon6	c.G693A	p.Q231Q	.	.	.
ZNF829	374899	broad.mit.edu	36	19	42075106	42075106	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037232	exon6	c.C427A	p.L143I	.	.	.
ZNF829	374899	broad.mit.edu	36	19	42091078	42091078	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001037232	exon4	c.G220T	p.V74L	.	.	.
ZNF829	374899	broad.mit.edu	36	19	42091171	42091171	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037232	exon4	c.G127T	p.D43Y	.	.	.
ZNF568	374900	broad.mit.edu	36	19	42119561	42119561	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198539	exon5	c.G209T	p.R70I	.	.	.
ZNF568	374900	broad.mit.edu	36	19	42132344	42132344	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198539	exon7	c.A449G	p.E150G	.	.	.
ZNF568	374900	broad.mit.edu	36	19	42133308	42133308	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198539	exon7	c.G1413T	p.E471D	.	.	.
ZNF568	374900	broad.mit.edu	36	19	42133596	42133596	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198539	exon7	c.C1701A	p.F567L	.	.	.
ZNF420	147923	broad.mit.edu	36	19	42311285	42311285	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144689	exon5	c.C1552A	p.L518I	.	.	.
ZNF420	147923	broad.mit.edu	36	19	42311721	42311721	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144689	exon5	c.G1988T	p.R663I	.	.	.
ZNF585A	199704	broad.mit.edu	36	19	42334467	42334467	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199126	exon6	c.A2009C	p.K670T	.	.	.
ZNF585B	92285	broad.mit.edu	36	19	42368423	42368423	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152279	exon5	c.C1856A	p.S619Y	.	.	.
ZNF585B	92285	broad.mit.edu	36	19	42369226	42369226	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152279	exon5	c.G1053T	p.E351D	.	.	.
ZNF585B	92285	broad.mit.edu	36	19	42369313	42369313	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152279	exon5	c.A966C	p.R322S	.	.	.
ZNF585B	92285	broad.mit.edu	36	19	42369396	42369396	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152279	exon5	c.G883T	p.E295X	.	.	.
TMIGD2	126259	broad.mit.edu	36	19	4249048	4249048	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001169126	exon2	c.C341T	p.A114V	.	.	.
HKR1	284459	broad.mit.edu	36	19	42545515	42545515	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181786	exon6	c.G978T	p.E326D	.	.	.
HKR1	284459	broad.mit.edu	36	19	42546224	42546224	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181786	exon6	c.C1687T	p.R563W	.	.	.
FSD1	79187	broad.mit.edu	36	19	4256965	4256965	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024333	exon2	c.A38C	p.K13T	.	.	.
ZNF569	148266	broad.mit.edu	36	19	42595355	42595355	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152484	exon6	c.G2045T	p.R682I	.	.	.
ZNF569	148266	broad.mit.edu	36	19	42596363	42596363	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152484	exon6	c.G1037T	p.R346I	.	.	.
ZNF569	148266	broad.mit.edu	36	19	42596813	42596813	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152484	exon6	c.A587C	p.N196T	.	.	.
ZNF570	148268	broad.mit.edu	36	19	42667077	42667077	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144694	exon5	c.G713A	p.R238K	.	.	.
ZNF570	148268	broad.mit.edu	36	19	42667345	42667345	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144694	exon5	c.G981T	p.E327D	.	.	.
ZNF570	148268	broad.mit.edu	36	19	42667595	42667595	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144694	exon5	c.G1231T	p.E411X	.	.	.
ZNF793	390927	broad.mit.edu	36	19	42720298	42720298	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013659	exon8	c.G898T	p.E300X	.	.	.
ZNF571	51276	broad.mit.edu	36	19	42748442	42748442	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016536	exon4	c.G728T	p.R243I	.	.	.
STAP2	55620	broad.mit.edu	36	19	4278184	4278184	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001013841	exon8	c.G700A	p.V234M	.	.	.
ZNF540	163255	broad.mit.edu	36	19	42794569	42794569	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152606	exon5	c.C548A	p.S183Y	.	.	.
ZNF540	163255	broad.mit.edu	36	19	42795543	42795543	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152606	exon5	c.T1522G	p.F508V	.	.	.
ZNF540	163255	broad.mit.edu	36	19	42795906	42795906	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152606	exon5	c.C1885A	p.H629N	.	.	.
ZFP30	22835	broad.mit.edu	36	19	42817741	42817741	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014898	exon6	c.G1541A	p.R514Q	.	.	.
ZNF781	163115	broad.mit.edu	36	19	42852145	42852145	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152605	exon4	c.G745T	p.E249X	.	.	.
ZNF607	84775	broad.mit.edu	36	19	42880794	42880794	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032689	exon5	c.G2078T	p.R693I	.	.	.
ZNF607	84775	broad.mit.edu	36	19	42881046	42881046	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032689	exon5	c.G1826T	p.R609I	.	.	.
ZNF607	84775	broad.mit.edu	36	19	42881549	42881549	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032689	exon5	c.A1323C	p.R441S	.	.	.
ZNF607	84775	broad.mit.edu	36	19	42881870	42881870	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032689	exon5	c.G1002T	p.E334D	.	.	.
ZNF607	84775	broad.mit.edu	36	19	42882304	42882304	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032689	exon5	c.A568C	p.K190Q	.	.	.
ZNF607	84775	broad.mit.edu	36	19	42892549	42892549	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032689	exon3	c.C24T	p.F8F	.	.	.
ZNF573	126231	broad.mit.edu	36	19	42922138	42922138	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172691	exon5	c.A1087T	p.K363X	.	.	.
SPINT2	10653	broad.mit.edu	36	19	43472717	43472717	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001166103	exon4	c.G339T	p.K113N	.	.	.
GGN	199720	broad.mit.edu	36	19	43568942	43568942	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152657	exon3	c.C800T	p.S267L	.	.	.
FAM98C	147965	broad.mit.edu	36	19	43589429	43589429	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_174905	exon7	c.C790T	p.R264X	.	.	.
RASGRP4	115727	broad.mit.edu	36	19	43593680	43593680	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146206	exon12	c.A1200T	p.E400D	.	.	.
CHAF1A	10036	broad.mit.edu	36	19	4360115	4360115	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005483	exon3	c.G319A	p.E107K	.	.	.
RYR1	6261	broad.mit.edu	36	19	43635398	43635398	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042723	exon13	c.C1344A	p.I448I	.	.	.
RYR1	6261	broad.mit.edu	36	19	43648856	43648856	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042723	exon24	c.C3156T	p.I1052I	.	.	.
RYR1	6261	broad.mit.edu	36	19	43755663	43755663	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042723	exon95	c.C13990A	p.L4664M	.	.	.
MAP4K1	11184	broad.mit.edu	36	19	43793781	43793781	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042600	exon10	c.C670A	p.L224I	.	.	.
CHAF1A	10036	broad.mit.edu	36	19	4383007	4383007	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005483	exon12	c.A2006G	p.D669G	.	.	.
ACTN4	81	broad.mit.edu	36	19	43906530	43906530	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004924	exon14	c.C1665A	p.F555L	.	.	.
ZFP36	7538	broad.mit.edu	36	19	44590894	44590894	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003407	exon2	c.C696A	p.F232L	.	.	.
PLEKHG2	64857	broad.mit.edu	36	19	44607067	44607067	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022835	exon19	c.C3454A	p.L1152I	.	.	.
SUPT5H	6829	broad.mit.edu	36	19	44652630	44652630	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003169	exon16	c.G1406T	p.R469I	.	.	.
TIMM50	92609	broad.mit.edu	36	19	44668177	44668177	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001563	exon6	c.G691A	p.E231K	.	.	.
TIMM50	92609	broad.mit.edu	36	19	44668766	44668766	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001563	exon7	c.G901A	p.G301S	.	.	.
CLC	1178	broad.mit.edu	36	19	44913904	44913904	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001828	exon4	c.G385T	p.D129Y	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45058091	45058091	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003890	exon30	c.C13983A	p.S4661S	.	.	.
SEMA6B	10501	broad.mit.edu	36	19	4507998	4507998	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032108	exon5	c.G334A	p.D112N	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45084031	45084031	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003890	exon17	c.A8195C	p.E2732A	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45122160	45122160	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003890	exon3	c.G1623A	p.S541S	.	.	.
PSMC4	5704	broad.mit.edu	36	19	45178083	45178083	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153001	exon9	c.G876T	p.R292R	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45203852	45203852	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178544	exon4	c.C94A	p.L32I	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45211727	45211727	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178544	exon7	c.G710T	p.R237I	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45211865	45211865	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178544	exon7	c.G848T	p.R283I	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45212381	45212381	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178544	exon7	c.A1364G	p.E455G	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45212602	45212602	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178544	exon7	c.G1585A	p.E529K	.	.	.
ZNF780B	163131	broad.mit.edu	36	19	45233668	45233668	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005851	exon5	c.C938T	p.A313V	.	.	.
ZNF780A	284323	broad.mit.edu	36	19	45272657	45272657	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142578	exon6	c.G1532T	p.R511I	.	.	.
ZNF780A	284323	broad.mit.edu	36	19	45273300	45273300	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142578	exon6	c.A889T	p.K297X	.	.	.
AKT2	208	broad.mit.edu	36	19	45432840	45432840	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001626	exon13	c.G1318A	p.D440N	.	.	.
RAB4B	53916	broad.mit.edu	36	19	45978181	45978181	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016154	exon3	c.T149C	p.V50A	.	.	.
CYP2A6	1548	broad.mit.edu	36	19	46041644	46041644	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000762	exon9	c.G1382A	p.R461H	.	.	.
CYP2A6	1548	broad.mit.edu	36	19	46048091	46048091	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000762	exon1	c.G81T	p.R27S	.	.	.
CYP2A13	1553	broad.mit.edu	36	19	46286386	46286386	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000766	exon1	c.C170T	p.S57F	.	.	.
CYP2F1	1572	broad.mit.edu	36	19	46322484	46322484	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000774	exon8	c.G985A	p.D329N	.	.	.
AXL	558	broad.mit.edu	36	19	46418423	46418423	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021913	exon2	c.A128C	p.N43T	.	.	.
AXL	558	broad.mit.edu	36	19	46457416	46457416	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021913	exon20	c.G2452A	p.E818K	.	.	.
CCDC97	90324	broad.mit.edu	36	19	46517573	46517573	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052848	exon3	c.G757A	p.E253K	.	.	.
CEACAM21	90273	broad.mit.edu	36	19	46783657	46783657	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033543	exon5	c.C816A	p.F272L	.	.	.
CEACAM4	1089	broad.mit.edu	36	19	46823871	46823871	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001817	exon2	c.G368A	p.R123Q	.	.	.
CEACAM7	1087	broad.mit.edu	36	19	46882824	46882824	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006890	exon2	c.G233A	p.R78Q	.	.	.
CEACAM5	1048	broad.mit.edu	36	19	46916828	46916828	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004363	exon8	c.C1918A	p.L640I	.	.	.
ATP1A3	478	broad.mit.edu	36	19	47163277	47163277	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152296	exon22	c.G2977A	p.E993K	.	.	.
ATP1A3	478	broad.mit.edu	36	19	47181372	47181372	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152296	exon7	c.G650A	p.R217H	.	.	.
GRIK5	2901	broad.mit.edu	36	19	47238735	47238735	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002088	exon11	c.G1282A	p.V428I	.	.	.
POU2F2	5452	broad.mit.edu	36	19	47291579	47291579	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002698	exon10	c.C864A	p.I288I	.	.	.
POU2F2	5452	broad.mit.edu	36	19	47291882	47291882	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002698	exon9	c.G655T	p.D219Y	.	.	.
POU2F2	5452	broad.mit.edu	36	19	47295593	47295593	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002698	exon7	c.A427C	p.N143H	.	.	.
DEDD2	162989	broad.mit.edu	36	19	47395445	47395445	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133328	exon5	c.G966A	p.P322P	.	.	.
FEM1A	55527	broad.mit.edu	36	19	4744084	4744084	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018708	exon1	c.C1218T	p.F406F	.	.	.
ERF	2077	broad.mit.edu	36	19	47446415	47446415	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006494	exon2	c.C165T	p.F55F	.	.	.
MEGF8	1954	broad.mit.edu	36	19	47546176	47546176	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001410	exon14	c.T2335C	p.S779P	.	.	.
MEGF8	1954	broad.mit.edu	36	19	47546349	47546349	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001410	exon14	c.G2508T	p.E836D	.	.	.
MEGF8	1954	broad.mit.edu	36	19	47558507	47558507	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001410	exon33	c.C5775T	p.S1925S	.	.	.
PSG8	440533	broad.mit.edu	36	19	47951068	47951068	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130168	exon3	c.C534A	p.V178V	.	.	.
PSG1	5669	broad.mit.edu	36	19	48064154	48064154	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006905	exon5	c.C1182T	p.C394C	.	.	.
PSG11	5680	broad.mit.edu	36	19	48211145	48211145	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_203287	exon3	c.C561T	p.G187G	.	.	.
PSG9	5678	broad.mit.edu	36	19	48463963	48463963	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002784	exon2	c.G243A	p.S81S	.	.	.
PLAUR	5329	broad.mit.edu	36	19	48844906	48844906	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005377	exon6	c.G849T	p.W283C	.	.	.
ZNF283	284349	broad.mit.edu	36	19	49044197	49044197	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181845	exon7	c.G1604T	p.R535I	.	.	.
ZNF283	284349	broad.mit.edu	36	19	49044384	49044384	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181845	exon7	c.G1791T	p.K597N	.	.	.
ZNF404	342908	broad.mit.edu	36	19	49069014	49069014	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001033719	exon2	c.C1183A	p.L395I	.	.	.
ZNF404	342908	broad.mit.edu	36	19	49069189	49069189	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001033719	exon2	c.C1008T	p.G336G	.	.	.
ZNF221	7638	broad.mit.edu	36	19	49160944	49160944	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013359	exon4	c.G84T	p.E28D	.	.	.
ZNF221	7638	broad.mit.edu	36	19	49161888	49161888	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013359	exon6	c.G394T	p.D132Y	.	.	.
ZNF221	7638	broad.mit.edu	36	19	49162161	49162161	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013359	exon6	c.G667T	p.E223X	.	.	.
ZNF221	7638	broad.mit.edu	36	19	49162358	49162358	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013359	exon6	c.G864A	p.G288G	.	.	.
ZNF222	7673	broad.mit.edu	36	19	49228060	49228060	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013360	exon4	c.C393T	p.F131F	.	.	.
ZNF222	7673	broad.mit.edu	36	19	49228542	49228542	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013360	exon4	c.G875A	p.R292K	.	.	.
ZNF222	7673	broad.mit.edu	36	19	49228616	49228616	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013360	exon4	c.G949T	p.E317X	.	.	.
ZNF223	7766	broad.mit.edu	36	19	49262226	49262226	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013361	exon5	c.G405A	p.E135E	.	.	.
ZNF284	342909	broad.mit.edu	36	19	49282155	49282155	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037813	exon5	c.G684T	p.E228D	.	.	.
ZNF284	342909	broad.mit.edu	36	19	49282953	49282953	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037813	exon5	c.G1482T	p.E494D	.	.	.
ZNF224	7767	broad.mit.edu	36	19	49302499	49302499	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013398	exon6	c.G346T	p.D116Y	.	.	.
ZNF225	7768	broad.mit.edu	36	19	49327278	49327278	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013362	exon5	c.G671T	p.R224I	.	.	.
ZNF225	7768	broad.mit.edu	36	19	49328304	49328304	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013362	exon5	c.G1697T	p.R566I	.	.	.
ZNF227	7770	broad.mit.edu	36	19	49431391	49431391	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182490	exon6	c.C968A	p.S323Y	.	.	.
ZNF233	353355	broad.mit.edu	36	19	49470467	49470467	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181756	exon5	c.C1814T	p.S605L	.	.	.
ZFP112	7771	broad.mit.edu	36	19	49523816	49523816	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013380	exon4	c.G2334T	p.K778N	.	.	.
ZNF285	26974	broad.mit.edu	36	19	49584008	49584008	+	Missense_Mutation	SNP	C	A	A	rs73039940	by-1000genomes	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152354	exon4	c.G239T	p.R80M	.	.	.
ZNF180	7733	broad.mit.edu	36	19	49673047	49673047	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013256	exon5	c.G1491A	p.Q497Q	.	.	.
ZNF180	7733	broad.mit.edu	36	19	49673168	49673168	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013256	exon5	c.G1370T	p.R457I	.	.	.
ZNF180	7733	broad.mit.edu	36	19	49673336	49673336	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013256	exon5	c.G1202T	p.R401I	.	.	.
ZNF180	7733	broad.mit.edu	36	19	49673834	49673834	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013256	exon5	c.G704T	p.S235I	.	.	.
CEACAM20	125931	broad.mit.edu	36	19	49721087	49721087	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102597	exon2	c.C83A	p.A28D	.	.	.
CKM	1158	broad.mit.edu	36	19	50502605	50502605	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001824	exon7	c.G921T	p.K307N	.	.	.
PPM1N	147699	broad.mit.edu	36	19	50694295	50694295	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080401	exon1	c.C725T	p.P242L	.	.	.
DMWD	1762	broad.mit.edu	36	19	50981655	50981655	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004943	exon3	c.C939T	p.F313F	.	.	.
NOVA2	4858	broad.mit.edu	36	19	51135852	51135852	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002516	exon4	c.C588T	p.I196I	.	.	.
HIF3A	64344	broad.mit.edu	36	19	51530011	51530011	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152795	exon14	c.C1840T	p.L614L	.	.	.
PPP5C	5536	broad.mit.edu	36	19	51549034	51549034	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006247	exon2	c.C311A	p.A104D	.	.	.
PNMAL1	55228	broad.mit.edu	36	19	51663651	51663651	+	3'UTR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001103149	exon3	c.G1122A	p.G374G	.	.	.
PNMAL2	57469	broad.mit.edu	36	19	51689774	51689774	+	Silent	SNP	C	T	T	rs35793066	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020709	exon1	c.G789A	p.S263S	.	.	.
PNMAL2	57469	broad.mit.edu	36	19	51690149	51690149	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020709	exon1	c.G414T	p.Q138H	.	.	.
STRN4	29888	broad.mit.edu	36	19	51933288	51933288	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039877	exon3	c.G433T	p.E145X	.	.	.
GRLF1	2909	broad.mit.edu	36	19	52114461	52114461	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004491	exon1	c.C689T	p.A230V	.	.	.
GRLF1	2909	broad.mit.edu	36	19	52114970	52114970	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004491	exon1	c.G1198A	p.E400K	.	.	.
GRLF1	2909	broad.mit.edu	36	19	52116762	52116762	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004491	exon1	c.G2990A	p.R997Q	.	.	.
GRLF1	2909	broad.mit.edu	36	19	52194450	52194450	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004491	exon5	c.G4086T	p.K1362N	.	.	.
CCDC9	26093	broad.mit.edu	36	19	52466524	52466524	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015603	exon12	c.G1345T	p.D449Y	.	.	.
C5AR1	728	broad.mit.edu	36	19	52515157	52515157	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001736	exon2	c.T282C	p.R94R	.	.	.
GPR77	27202	broad.mit.edu	36	19	52536851	52536851	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018485	exon2	c.G955A	p.E319K	.	.	.
NAPA	8775	broad.mit.edu	36	19	52688515	52688515	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003827	exon5	c.C390A	p.I130I	.	.	.
EHD2	30846	broad.mit.edu	36	19	52911826	52911826	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014601	exon2	c.G145A	p.A49T	.	.	.
EHD2	30846	broad.mit.edu	36	19	52920973	52920973	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014601	exon4	c.G595A	p.E199K	.	.	.
GLTSCR2	29997	broad.mit.edu	36	19	52945262	52945262	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015710	exon3	c.G305T	p.R102I	.	.	.
CRX	1406	broad.mit.edu	36	19	53034587	53034587	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000554	exon4	c.G451T	p.G151C	.	.	.
CRX	1406	broad.mit.edu	36	19	53034906	53034906	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000554	exon4	c.G770T	p.S257I	.	.	.
SULT2A1	6822	broad.mit.edu	36	19	53077202	53077202	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003167	exon3	c.G423T	p.K141N	.	.	.
PLA2G4C	8605	broad.mit.edu	36	19	53301608	53301608	+	5'UTR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001159322	exon2	c.G52A	p.A18T	.	.	.
LIG1	3978	broad.mit.edu	36	19	53352096	53352096	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000234	exon5	c.G357A	p.P119P	.	.	.
CARD8	22900	broad.mit.edu	36	19	53425879	53425879	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184902	exon9	c.G739A	p.E247K	.	.	.
ZNF114	163071	broad.mit.edu	36	19	53477546	53477546	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153608	exon4	c.C116A	p.S39Y	.	.	.
IZUMO1	284359	broad.mit.edu	36	19	53939536	53939536	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182575	exon4	c.G383A	p.R128Q	.	.	.
FUT1	2523	broad.mit.edu	36	19	53945501	53945501	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000148	exon4	c.G850A	p.D284N	.	.	.
FUT1	2523	broad.mit.edu	36	19	53945963	53945963	+	Missense_Mutation	SNP	C	T	T	rs56217834	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000148	exon4	c.G388A	p.V130M	.	.	.
PLEKHA4	57664	broad.mit.edu	36	19	54056557	54056557	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020904	exon5	c.G279T	p.E93D	.	.	.
ZNRF4	148066	broad.mit.edu	36	19	5406803	5406803	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181710	exon1	c.C301T	p.R101W	.	.	.
PPP1R15A	23645	broad.mit.edu	36	19	54069665	54069665	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014330	exon2	c.G1363A	p.D455N	.	.	.
TULP2	7288	broad.mit.edu	36	19	54083283	54083283	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003323	exon8	c.G684A	p.T228T	.	.	.
NUCB1	4924	broad.mit.edu	36	19	54095887	54095887	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006184	exon2	c.G22T	p.G8X	.	.	.
GYS1	2997	broad.mit.edu	36	19	54177389	54177389	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002103	exon7	c.G997T	p.E333X	.	.	.
SNRNP70	6625	broad.mit.edu	36	19	54281624	54281624	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003089	exon2	c.G141T	p.E47D	.	.	.
SNRNP70	6625	broad.mit.edu	36	19	54285367	54285367	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003089	exon3	c.G155A	p.R52Q	.	.	.
SLC6A16	28968	broad.mit.edu	36	19	54488306	54488306	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014037	exon10	c.C1764A	p.A588A	.	.	.
SLC6A16	28968	broad.mit.edu	36	19	54504005	54504005	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014037	exon7	c.C1169A	p.S390Y	.	.	.
TEAD2	8463	broad.mit.edu	36	19	54550420	54550420	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003598	exon5	c.G429A	p.A143A	.	.	.
DKKL1	27120	broad.mit.edu	36	19	54560712	54560712	+	Silent	SNP	C	T	T	rs34625472	by-frequency	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001197301	exon3	c.C318T	p.I106I	.	.	.
PIH1D1	55011	broad.mit.edu	36	19	54643108	54643108	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017916	exon4	c.G361A	p.D121N	.	.	.
TSKS	60385	broad.mit.edu	36	19	54936956	54936956	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021733	exon9	c.C1495A	p.L499M	.	.	.
TSKS	60385	broad.mit.edu	36	19	54939389	54939389	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021733	exon8	c.C1272T	p.F424F	.	.	.
IL4I1	259307	broad.mit.edu	36	19	55086480	55086480	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152899	exon6	c.G630A	p.T210T	.	.	.
IL4I1	259307	broad.mit.edu	36	19	55090963	55090963	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152899	exon3	c.A173G	p.K58R	.	.	.
NUP62	23636	broad.mit.edu	36	19	55103512	55103512	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012346	exon2	c.C1365T	p.I455I	.	.	.
SIGLEC11	114132	broad.mit.edu	36	19	55147386	55147386	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135163	exon8	c.T1441C	p.S481P	.	.	.
SIGLEC11	114132	broad.mit.edu	36	19	55154116	55154116	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135163	exon6	c.C1088T	p.S363F	.	.	.
ZNF473	25888	broad.mit.edu	36	19	55241460	55241460	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001006656	exon5	c.G1948A	p.E650K	.	.	.
SAFB2	9667	broad.mit.edu	36	19	5543762	5543762	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014649	exon16	c.G2344A	p.D782N	.	.	.
MYH14	79784	broad.mit.edu	36	19	55476785	55476785	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077186	exon32	c.G4314T	p.E1438D	.	.	.
SAFB2	9667	broad.mit.edu	36	19	5555628	5555628	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014649	exon11	c.G1525A	p.D509N	.	.	.
NAPSA	9476	broad.mit.edu	36	19	55557268	55557268	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004851	exon2	c.C198A	p.I66I	.	.	.
SAFB2	9667	broad.mit.edu	36	19	5564529	5564529	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014649	exon5	c.G553T	p.E185X	.	.	.
MYBPC2	4606	broad.mit.edu	36	19	55656640	55656640	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004533	exon25	c.G2961A	p.R987R	.	.	.
KLK2	3817	broad.mit.edu	36	19	56071732	56071732	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002231	exon3	c.A399C	p.T133T	.	.	.
KLK4	9622	broad.mit.edu	36	19	56103706	56103706	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004917	exon3	c.C416T	p.S139L	.	.	.
KLK6	5653	broad.mit.edu	36	19	56158605	56158605	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012964	exon4	c.C210A	p.V70V	.	.	.
KLK12	43849	broad.mit.edu	36	19	56229674	56229674	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145894	exon2	c.T16G	p.F6V	.	.	.
KLK13	26085	broad.mit.edu	36	19	56251703	56251703	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015596	exon5	c.C787T	p.R263X	.	.	.
KLK13	26085	broad.mit.edu	36	19	56251797	56251797	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015596	exon5	c.C693T	p.I231I	.	.	.
SIGLEC9	27180	broad.mit.edu	36	19	56320908	56320908	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001198558	exon2	c.G664T	p.V222L	.	.	.
SIGLEC7	27036	broad.mit.edu	36	19	56337772	56337772	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014385	exon1	c.G334A	p.D112N	.	.	.
SIGLEC7	27036	broad.mit.edu	36	19	56341852	56341852	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014385	exon5	c.C1057T	p.L353L	.	.	.
SIGLEC7	27036	broad.mit.edu	36	19	56348203	56348203	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014385	exon7	c.G1293A	p.E431E	.	.	.
LIM2	3982	broad.mit.edu	36	19	56575607	56575607	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001161748	exon4	c.C424T	p.L142L	.	.	.
SIGLEC10	89790	broad.mit.edu	36	19	56612214	56612214	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171157	exon2	c.C355T	p.R119W	.	.	.
SIGLEC8	27181	broad.mit.edu	36	19	56653392	56653392	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014442	exon1	c.G62T	p.R21I	.	.	.
SIGLEC6	946	broad.mit.edu	36	19	56724941	56724941	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001245	exon5	c.C861T	p.F287F	.	.	.
ZNF175	7728	broad.mit.edu	36	19	56782086	56782086	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007147	exon5	c.T690C	p.G230G	.	.	.
SIGLEC5	8778	broad.mit.edu	36	19	56807375	56807375	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003830	exon9	c.C1577A	p.S526Y	.	.	.
SIGLEC5	8778	broad.mit.edu	36	19	56823029	56823029	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003830	exon5	c.C867T	p.N289N	.	.	.
HAS1	3036	broad.mit.edu	36	19	56914295	56914295	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001523	exon2	c.C678T	p.L226L	.	.	.
TMEM146	257062	broad.mit.edu	36	19	5696965	5696965	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152784	exon9	c.C699T	p.F233F	.	.	.
FPR3	2359	broad.mit.edu	36	19	57019055	57019055	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002030	exon2	c.G242A	p.R81Q	.	.	.
TMEM146	257062	broad.mit.edu	36	19	5705252	5705252	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152784	exon13	c.C1274A	p.P425H	.	.	.
ZNF577	84765	broad.mit.edu	36	19	57067764	57067764	+	Missense_Mutation	SNP	G	A	A	rs45526832	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032679	exon7	c.C1291T	p.R431C	.	.	.
ZNF649	65251	broad.mit.edu	36	19	57086923	57086923	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023074	exon5	c.A278G	p.Q93R	.	.	.
ZNF350	59348	broad.mit.edu	36	19	57160862	57160862	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021632	exon5	c.C656A	p.S219Y	.	.	.
ZNF615	284370	broad.mit.edu	36	19	57188882	57188882	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198480	exon6	c.G1259A	p.R420Q	.	.	.
ZNF615	284370	broad.mit.edu	36	19	57189383	57189383	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198480	exon6	c.C758T	p.T253I	.	.	.
ZNF614	80110	broad.mit.edu	36	19	57212000	57212000	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025040	exon5	c.T663G	p.I221M	.	.	.
ZNF432	9668	broad.mit.edu	36	19	57229128	57229128	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014650	exon5	c.A1616G	p.K539R	.	.	.
ZNF432	9668	broad.mit.edu	36	19	57229965	57229965	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014650	exon5	c.C779A	p.S260Y	.	.	.
TMEM146	257062	broad.mit.edu	36	19	5727306	5727306	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152784	exon21	c.G2076A	p.S692S	.	.	.
ZNF616	90317	broad.mit.edu	36	19	57310522	57310522	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178523	exon4	c.A1707C	p.R569S	.	.	.
ZNF616	90317	broad.mit.edu	36	19	57311291	57311291	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178523	exon4	c.G938T	p.R313I	.	.	.
ZNF616	90317	broad.mit.edu	36	19	57311405	57311405	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178523	exon4	c.G824A	p.G275D	.	.	.
ZNF616	90317	broad.mit.edu	36	19	57311861	57311861	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178523	exon4	c.G368T	p.R123I	.	.	.
ZNF836	162962	broad.mit.edu	36	19	57350943	57350943	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102657	exon5	c.G1805T	p.R602I	.	.	.
ZNF766	90321	broad.mit.edu	36	19	57485828	57485828	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001010851	exon4	c.G972T	p.E324D	.	.	.
ZNF610	162963	broad.mit.edu	36	19	57561412	57561412	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173530	exon6	c.G969A	p.K323K	.	.	.
ZNF528	84436	broad.mit.edu	36	19	57610753	57610753	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032423	exon7	c.G836A	p.R279Q	.	.	.
ZNF528	84436	broad.mit.edu	36	19	57611428	57611428	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032423	exon7	c.G1511A	p.R504H	.	.	.
ZNF534	147658	broad.mit.edu	36	19	57633242	57633242	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001143939	exon4	c.G756T	p.E252D	.	.	.
ZNF578	147660	broad.mit.edu	36	19	57706534	57706534	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099694	exon6	c.G1088T	p.R363I	.	.	.
ZNF701	55762	broad.mit.edu	36	19	57778469	57778469	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018260	exon4	c.C1345T	p.R449X	.	.	.
ZNF83	55769	broad.mit.edu	36	19	57808368	57808368	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001105552	exon4	c.G1262T	p.R421I	.	.	.
ZNF611	81856	broad.mit.edu	36	19	57900569	57900569	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001161501	exon5	c.G1344T	p.K448N	.	.	.
ZNF600	162966	broad.mit.edu	36	19	57962753	57962753	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198457	exon3	c.G68A	p.R23K	.	.	.
ZNF28	7576	broad.mit.edu	36	19	57995041	57995041	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006969	exon4	c.A1869C	p.I623I	.	.	.
ZNF320	162967	broad.mit.edu	36	19	58076061	58076061	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207333	exon4	c.G1130T	p.R377I	.	.	.
ZNF816	125893	broad.mit.edu	36	19	58145128	58145128	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031665	exon5	c.C1712T	p.A571V	.	.	.
ZNF816	125893	broad.mit.edu	36	19	58145668	58145668	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031665	exon5	c.A1172G	p.H391R	.	.	.
ZNF160	90338	broad.mit.edu	36	19	58264067	58264067	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198893	exon7	c.G1532T	p.C511F	.	.	.
ZNF160	90338	broad.mit.edu	36	19	58264499	58264499	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198893	exon7	c.A1100G	p.K367R	.	.	.
ZNF160	90338	broad.mit.edu	36	19	58264602	58264602	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198893	exon7	c.C997T	p.R333X	.	.	.
ZNF415	55786	broad.mit.edu	36	19	58303986	58303986	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001136038	exon4	c.A1124C	p.Q375P	.	.	.
ZNF415	55786	broad.mit.edu	36	19	58304238	58304238	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001136038	exon4	c.G872T	p.R291L	.	.	.
ZNF415	55786	broad.mit.edu	36	19	58304447	58304447	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001136038	exon4	c.C663T	p.C221C	.	.	.
ZNF347	84671	broad.mit.edu	36	19	58335649	58335649	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172675	exon5	c.G2247T	p.Q749H	.	.	.
ZNF347	84671	broad.mit.edu	36	19	58336197	58336197	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172675	exon5	c.G1699T	p.E567X	.	.	.
ZNF665	79788	broad.mit.edu	36	19	58359705	58359705	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024733	exon4	c.G1850T	p.R617I	.	.	.
ZNF665	79788	broad.mit.edu	36	19	58360201	58360201	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024733	exon4	c.C1354T	p.H452Y	.	.	.
ZNF665	79788	broad.mit.edu	36	19	58370565	58370565	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024733	exon3	c.G87T	p.Q29H	.	.	.
ZNF677	342926	broad.mit.edu	36	19	58432440	58432440	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182609	exon5	c.G1352T	p.R451I	.	.	.
VN1R2	317701	broad.mit.edu	36	19	58454509	58454509	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173856	exon1	c.G1069A	p.A357T	.	.	.
VN1R4	317703	broad.mit.edu	36	19	58461987	58461987	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173857	exon1	c.C744A	p.L248L	.	.	.
ZNF765	91661	broad.mit.edu	36	19	58603156	58603156	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040185	exon4	c.G536T	p.R179I	.	.	.
ZNF765	91661	broad.mit.edu	36	19	58603576	58603576	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040185	exon4	c.G956T	p.R319I	.	.	.
ZNF761	388561	broad.mit.edu	36	19	58650241	58650241	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008401	exon6	c.C669T	p.S223S	.	.	.
ZNF813	126017	broad.mit.edu	36	19	58685463	58685463	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004301	exon4	c.G165T	p.M55I	.	.	.
ZNF813	126017	broad.mit.edu	36	19	58685837	58685837	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004301	exon4	c.T539G	p.I180S	.	.	.
ZNF813	126017	broad.mit.edu	36	19	58686033	58686033	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004301	exon4	c.T735G	p.C245W	.	.	.
ZNF813	126017	broad.mit.edu	36	19	58687110	58687110	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004301	exon4	c.G1812T	p.E604D	.	.	.
ZNF331	55422	broad.mit.edu	36	19	58771765	58771765	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001079906	exon6	c.T139C	p.L47L	.	.	.
ZNF331	55422	broad.mit.edu	36	19	58772990	58772990	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001079906	exon6	c.G1364A	p.R455Q	.	.	.
NLRP12	91662	broad.mit.edu	36	19	58989154	58989154	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144687	exon10	c.G3147A	p.A1049A	.	.	.
NLRP12	91662	broad.mit.edu	36	19	59002639	59002639	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144687	exon4	c.G2165A	p.R722Q	.	.	.
NLRP12	91662	broad.mit.edu	36	19	59005623	59005623	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144687	exon3	c.G1102A	p.A368T	.	.	.
NLRP12	91662	broad.mit.edu	36	19	59006140	59006140	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144687	exon3	c.G585T	p.K195N	.	.	.
NLRP12	91662	broad.mit.edu	36	19	59019075	59019075	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144687	exon1	c.A166C	p.M56L	.	.	.
PRKCG	5582	broad.mit.edu	36	19	59079259	59079259	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002739	exon3	c.G235A	p.E79K	.	.	.
CACNG6	59285	broad.mit.edu	36	19	59193330	59193330	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145815	exon2	c.C357A	p.F119L	.	.	.
TMC4	147798	broad.mit.edu	36	19	59359292	59359292	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145303	exon8	c.G1271A	p.R424H	.	.	.
RPS9	6203	broad.mit.edu	36	19	59396960	59396960	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013	exon2	c.C96T	p.I32I	.	.	.
LILRB3	11025	broad.mit.edu	36	19	59437914	59437914	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024318	exon3	c.G155A	p.S52N	.	.	.
LILRB5	10990	broad.mit.edu	36	19	59448186	59448186	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001081442	exon10	c.C1513T	p.P505S	.	.	.
LILRB5	10990	broad.mit.edu	36	19	59450993	59450993	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001081442	exon5	c.C920T	p.A307V	.	.	.
LILRA5	353514	broad.mit.edu	36	19	59514708	59514708	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021250	exon5	c.G500T	p.R167I	.	.	.
TTYH1	57348	broad.mit.edu	36	19	59634109	59634109	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005367	exon10	c.G1053T	p.E351D	.	.	.
LENG9	94059	broad.mit.edu	36	19	59665526	59665526	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198988	exon1	c.C1062A	p.F354L	.	.	.
RFX2	5990	broad.mit.edu	36	19	5967224	5967224	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000635	exon7	c.C656A	p.S219Y	.	.	.
LAIR2	3904	broad.mit.edu	36	19	59711051	59711051	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002288	exon3	c.C204T	p.Y68Y	.	.	.
LILRA2	11027	broad.mit.edu	36	19	59778046	59778046	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130917	exon4	c.G389A	p.S130N	.	.	.
LILRB1	10859	broad.mit.edu	36	19	59836949	59836949	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001081639	exon8	c.C1310A	p.S437Y	.	.	.
LILRB1	10859	broad.mit.edu	36	19	59837932	59837932	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001081639	exon10	c.C1389T	p.I463I	.	.	.
LILRB1	10859	broad.mit.edu	36	19	59840059	59840059	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001081639	exon15	c.G1874A	p.R625Q	.	.	.
KIR3DL1	3811	broad.mit.edu	36	19	60033533	60033533	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013289	exon9	c.C1326A	p.S442S	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60142423	60142423	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139176	exon4	c.G1576A	p.A526T	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60143311	60143311	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139176	exon4	c.G688T	p.D230Y	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60143594	60143594	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139176	exon4	c.G405T	p.K135N	.	.	.
NLRP2	55655	broad.mit.edu	36	19	60180969	60180969	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174083	exon5	c.C294T	p.D98D	.	.	.
NLRP2	55655	broad.mit.edu	36	19	60200632	60200632	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001174083	exon13	c.C2946A	p.T982T	.	.	.
GP6	51206	broad.mit.edu	36	19	60218912	60218912	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016363	exon7	c.G726T	p.E242D	.	.	.
PPP1R12C	54776	broad.mit.edu	36	19	60299325	60299325	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017607	exon8	c.G1059T	p.K353N	.	.	.
PTPRH	5794	broad.mit.edu	36	19	60405250	60405250	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002842	exon6	c.G1139A	p.R380Q	.	.	.
HSPBP1	23640	broad.mit.edu	36	19	60465831	60465831	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012267	exon8	c.A1037G	p.Q346R	.	.	.
ZNF628	89887	broad.mit.edu	36	19	60684623	60684623	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033113	exon3	c.G239A	p.R80Q	.	.	.
U2AF2	11338	broad.mit.edu	36	19	60871901	60871901	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007279	exon9	c.G876T	p.K292N	.	.	.
NLRP9	338321	broad.mit.edu	36	19	60933059	60933059	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176820	exon3	c.G1944A	p.A648A	.	.	.
NLRP9	338321	broad.mit.edu	36	19	60935206	60935206	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_176820	exon2	c.C1803A	p.I601I	.	.	.
NLRP9	338321	broad.mit.edu	36	19	60935317	60935317	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176820	exon2	c.C1692A	p.F564L	.	.	.
NLRP9	338321	broad.mit.edu	36	19	60936356	60936356	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_176820	exon2	c.C653T	p.S218F	.	.	.
NLRP11	204801	broad.mit.edu	36	19	61021122	61021122	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145007	exon4	c.T231G	p.R77R	.	.	.
ACSBG2	81616	broad.mit.edu	36	19	6102751	6102751	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030924	exon4	c.C331A	p.L111M	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61061829	61061829	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_134444	exon3	c.C1258T	p.R420W	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61061928	61061928	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_134444	exon3	c.G1357A	p.V453M	.	.	.
NLRP13	126204	broad.mit.edu	36	19	61111014	61111014	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176810	exon7	c.T2403G	p.I801M	.	.	.
NLRP13	126204	broad.mit.edu	36	19	61115423	61115423	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176810	exon5	c.G1572T	p.K524N	.	.	.
NLRP13	126204	broad.mit.edu	36	19	61127835	61127835	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176810	exon3	c.G390T	p.G130G	.	.	.
NLRP8	126205	broad.mit.edu	36	19	61159168	61159168	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176811	exon3	c.G1932A	p.V644V	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61207080	61207080	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153447	exon2	c.A249G	p.L83L	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61230503	61230503	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153447	exon7	c.C1092T	p.F364F	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61231230	61231230	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153447	exon7	c.C1819A	p.L607I	.	.	.
ACSBG2	81616	broad.mit.edu	36	19	6136583	6136583	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030924	exon11	c.G1459A	p.D487N	.	.	.
ACSBG2	81616	broad.mit.edu	36	19	6138386	6138386	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030924	exon12	c.T1633C	p.L545L	.	.	.
ZSCAN5B	342933	broad.mit.edu	36	19	61393405	61393405	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080456	exon4	c.T1091G	p.F364C	.	.	.
ZSCAN5A	79149	broad.mit.edu	36	19	61425068	61425068	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024303	exon5	c.C1179A	p.F393L	.	.	.
ZSCAN5A	79149	broad.mit.edu	36	19	61425870	61425870	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024303	exon4	c.C641A	p.S214Y	.	.	.
ZNF582	147948	broad.mit.edu	36	19	61587653	61587653	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144690	exon5	c.A945G	p.E315E	.	.	.
ZNF582	147948	broad.mit.edu	36	19	61593190	61593190	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144690	exon4	c.T224A	p.L75Q	.	.	.
ZNF583	147949	broad.mit.edu	36	19	61626534	61626534	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001159860	exon5	c.G695T	p.R232I	.	.	.
ZNF583	147949	broad.mit.edu	36	19	61626812	61626812	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001159860	exon5	c.G973A	p.E325K	.	.	.
ZNF667	63934	broad.mit.edu	36	19	61644359	61644359	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022103	exon5	c.C1817A	p.S606Y	.	.	.
ZNF471	57573	broad.mit.edu	36	19	61728093	61728093	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020813	exon5	c.G845T	p.R282I	.	.	.
ZFP28	140612	broad.mit.edu	36	19	61757299	61757299	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020828	exon8	c.G1333T	p.E445X	.	.	.
ZFP28	140612	broad.mit.edu	36	19	61757540	61757540	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020828	exon8	c.G1574T	p.R525I	.	.	.
ZNF470	388566	broad.mit.edu	36	19	61780279	61780279	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001668	exon6	c.G670T	p.E224X	.	.	.
ZNF470	388566	broad.mit.edu	36	19	61780457	61780457	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001668	exon6	c.C848A	p.P283H	.	.	.
ZNF470	388566	broad.mit.edu	36	19	61780706	61780706	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001668	exon6	c.G1097T	p.R366I	.	.	.
ZNF835	90485	broad.mit.edu	36	19	61867628	61867628	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005850	exon2	c.G817A	p.E273K	.	.	.
ZIM2	23619	broad.mit.edu	36	19	61977902	61977902	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146326	exon12	c.C1550T	p.S517F	.	.	.
ZIM2	23619	broad.mit.edu	36	19	61978663	61978663	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146326	exon12	c.G789T	p.E263D	.	.	.
PEG3	5178	broad.mit.edu	36	19	62017252	62017252	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146186	exon7	c.G4370A	p.G1457D	.	.	.
PEG3	5178	broad.mit.edu	36	19	62017945	62017946	+	Nonsense_Mutation	DNP	CG	TA	TA	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146186	exon7	c.3676_3677TA	.	.	.	.
PEG3	5178	broad.mit.edu	36	19	62018304	62018304	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146186	exon7	c.C3318A	p.I1106I	.	.	.
PEG3	5178	broad.mit.edu	36	19	62018454	62018454	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146186	exon7	c.G3168T	p.E1056D	.	.	.
PEG3	5178	broad.mit.edu	36	19	62019058	62019058	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146186	exon7	c.C2564A	p.S855Y	.	.	.
PEG3	5178	broad.mit.edu	36	19	62019297	62019297	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146186	exon7	c.G2325T	p.E775D	.	.	.
USP29	57663	broad.mit.edu	36	19	62332098	62332098	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020903	exon4	c.C243A	p.F81L	.	.	.
USP29	57663	broad.mit.edu	36	19	62332973	62332973	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020903	exon4	c.C1118T	p.A373V	.	.	.
ZIM3	114026	broad.mit.edu	36	19	62338463	62338463	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052882	exon5	c.G1054A	p.D352N	.	.	.
ZIM3	114026	broad.mit.edu	36	19	62339142	62339142	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052882	exon5	c.A375C	p.K125N	.	.	.
ZNF264	9422	broad.mit.edu	36	19	62415643	62415643	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003417	exon4	c.G1366A	p.E456K	.	.	.
AURKC	6795	broad.mit.edu	36	19	62435243	62435243	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003160	exon3	c.C33T	p.I11I	.	.	.
AURKC	6795	broad.mit.edu	36	19	62438109	62438109	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003160	exon6	c.G528T	p.M176I	.	.	.
ZNF460	10794	broad.mit.edu	36	19	62494645	62494645	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006635	exon3	c.C924T	p.F308F	.	.	.
ZNF547	284306	broad.mit.edu	36	19	62581187	62581187	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173631	exon4	c.G1031T	p.R344I	.	.	.
ZNF548	147694	broad.mit.edu	36	19	62602219	62602219	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152909	exon3	c.G752T	p.R251M	.	.	.
ACER1	125981	broad.mit.edu	36	19	6260769	6260769	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133492	exon4	c.G427A	p.A143T	.	.	.
ZNF772	400720	broad.mit.edu	36	19	62676488	62676488	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001024596	exon5	c.G1436A	p.R479H	.	.	.
ZNF419	79744	broad.mit.edu	36	19	62696289	62696289	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098494	exon4	c.G456T	p.E152D	.	.	.
ZNF419	79744	broad.mit.edu	36	19	62696767	62696767	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098494	exon4	c.A934C	p.K312Q	.	.	.
ZNF419	79744	broad.mit.edu	36	19	62696934	62696934	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098494	exon4	c.T1101G	p.F367L	.	.	.
ZNF773	374928	broad.mit.edu	36	19	62709623	62709623	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198542	exon4	c.G348T	p.Q116H	.	.	.
ZNF773	374928	broad.mit.edu	36	19	62710341	62710341	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198542	exon4	c.G1066T	p.E356X	.	.	.
ZNF773	374928	broad.mit.edu	36	19	62710408	62710408	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198542	exon4	c.G1133A	p.R378Q	.	.	.
ZNF549	256051	broad.mit.edu	36	19	62738359	62738359	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199295	exon3	c.C108A	p.F36L	.	.	.
ZNF549	256051	broad.mit.edu	36	19	62740638	62740638	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199295	exon4	c.A454G	p.N152D	.	.	.
ZNF549	256051	broad.mit.edu	36	19	62741106	62741106	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199295	exon4	c.G922A	p.E308K	.	.	.
ZNF549	256051	broad.mit.edu	36	19	62741794	62741794	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199295	exon4	c.T1610C	p.V537A	.	.	.
ZNF549	256051	broad.mit.edu	36	19	62741998	62741998	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199295	exon4	c.G1814A	p.R605Q	.	.	.
ZNF416	55659	broad.mit.edu	36	19	62779023	62779023	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017879	exon3	c.G163A	p.D55N	.	.	.
ZIK1	284307	broad.mit.edu	36	19	62793567	62793567	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010879	exon4	c.G576T	p.K192N	.	.	.
ZNF530	348327	broad.mit.edu	36	19	62809113	62809113	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020880	exon3	c.C408A	p.L136L	.	.	.
ZNF530	348327	broad.mit.edu	36	19	62810356	62810356	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020880	exon3	c.G1651T	p.E551X	.	.	.
ZSCAN4	201516	broad.mit.edu	36	19	62881781	62881781	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152677	exon5	c.G998T	p.R333I	.	.	.
ZNF551	90233	broad.mit.edu	36	19	62890084	62890084	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138347	exon3	c.G581A	p.S194N	.	.	.
ZNF154	7710	broad.mit.edu	36	19	62905034	62905034	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001085384	exon3	c.C1095A	p.F365L	.	.	.
ZNF671	79891	broad.mit.edu	36	19	62924002	62924002	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024833	exon4	c.G1264T	p.E422X	.	.	.
ZNF671	79891	broad.mit.edu	36	19	62924116	62924116	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024833	exon4	c.C1150A	p.L384I	.	.	.
ZNF671	79891	broad.mit.edu	36	19	62924317	62924317	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024833	exon4	c.G949T	p.E317X	.	.	.
ZNF417	147687	broad.mit.edu	36	19	63111825	63111825	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152475	exon3	c.G1633T	p.E545X	.	.	.
C19orf18	147685	broad.mit.edu	36	19	63169767	63169767	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152474	exon4	c.C314T	p.S105L	.	.	.
ZNF606	80095	broad.mit.edu	36	19	63181572	63181572	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025027	exon7	c.G2288A	p.R763H	.	.	.
ZNF606	80095	broad.mit.edu	36	19	63182172	63182172	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025027	exon7	c.C1688A	p.S563Y	.	.	.
ZSCAN1	284312	broad.mit.edu	36	19	63255773	63255773	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182572	exon5	c.C569T	p.A190V	.	.	.
ZSCAN1	284312	broad.mit.edu	36	19	63256762	63256762	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182572	exon6	c.G758T	p.R253M	.	.	.
ZNF329	79673	broad.mit.edu	36	19	63332253	63332253	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024620	exon4	c.G430T	p.E144X	.	.	.
GTF2F1	2962	broad.mit.edu	36	19	6340607	6340607	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002096	exon4	c.A174C	p.Q58H	.	.	.
ZNF544	27300	broad.mit.edu	36	19	63465212	63465212	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014480	exon7	c.C1428A	p.S476R	.	.	.
ZNF544	27300	broad.mit.edu	36	19	63465593	63465593	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014480	exon7	c.C1809A	p.P603P	.	.	.
ZSCAN22	342945	broad.mit.edu	36	19	63541717	63541717	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181846	exon3	c.C689A	p.S230Y	.	.	.
ZSCAN22	342945	broad.mit.edu	36	19	63542417	63542417	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181846	exon3	c.T1389G	p.P463P	.	.	.
ZNF132	7691	broad.mit.edu	36	19	63637773	63637773	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003433	exon3	c.T850A	p.F284I	.	.	.
ZNF132	7691	broad.mit.edu	36	19	63637856	63637856	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003433	exon3	c.G767T	p.R256I	.	.	.
SLC27A5	10998	broad.mit.edu	36	19	63714067	63714067	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012254	exon2	c.C731A	p.A244D	.	.	.
CHMP2A	27243	broad.mit.edu	36	19	63757240	63757240	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198426	exon2	c.C152T	p.A51V	.	.	.
SLC25A23	79085	broad.mit.edu	36	19	6408528	6408528	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024103	exon3	c.G357A	p.E119E	.	.	.
DENND1C	79958	broad.mit.edu	36	19	6418766	6418766	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024898	exon23	c.C2155A	p.L719M	.	.	.
DENND1C	79958	broad.mit.edu	36	19	6426303	6426303	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024898	exon14	c.C1035T	p.D345D	.	.	.
DENND1C	79958	broad.mit.edu	36	19	6429850	6429850	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024898	exon6	c.T310C	p.F104L	.	.	.
DENND1C	79958	broad.mit.edu	36	19	6430707	6430707	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024898	exon4	c.A149C	p.K50T	.	.	.
DENND1C	79958	broad.mit.edu	36	19	6431028	6431028	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024898	exon2	c.G52A	p.E18K	.	.	.
C3	718	broad.mit.edu	36	19	6663606	6663606	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000064	exon10	c.C1032T	p.S344S	.	.	.
GPR108	56927	broad.mit.edu	36	19	6683521	6683521	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080452	exon11	c.G973A	p.E325K	.	.	.
GPR108	56927	broad.mit.edu	36	19	6685027	6685027	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080452	exon6	c.G538A	p.A180T	.	.	.
TRIP10	9322	broad.mit.edu	36	19	6693999	6693999	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004240	exon4	c.C219T	p.F73F	.	.	.
SH2D3A	10045	broad.mit.edu	36	19	6711665	6711665	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005490	exon3	c.C403T	p.R135W	.	.	.
VAV1	7409	broad.mit.edu	36	19	6780846	6780846	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005428	exon14	c.G1315T	p.D439Y	.	.	.
VAV1	7409	broad.mit.edu	36	19	6808081	6808081	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005428	exon27	c.C2501A	p.A834D	.	.	.
EMR1	2015	broad.mit.edu	36	19	6841546	6841546	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001974	exon2	c.A86C	p.N29T	.	.	.
EMR1	2015	broad.mit.edu	36	19	6848257	6848257	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001974	exon4	c.C336A	p.F112L	.	.	.
EMR1	2015	broad.mit.edu	36	19	6870714	6870714	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001974	exon13	c.G1576A	p.D526N	.	.	.
C19orf21	126353	broad.mit.edu	36	19	709401	709401	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173481	exon2	c.G1455A	p.S485S	.	.	.
ARHGEF18	23370	broad.mit.edu	36	19	7422049	7422049	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015318	exon7	c.C714A	p.F238L	.	.	.
ARHGEF18	23370	broad.mit.edu	36	19	7424468	7424468	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015318	exon8	c.C933T	p.I311I	.	.	.
MCOLN1	57192	broad.mit.edu	36	19	7499485	7499485	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020533	exon8	c.G880T	p.D294Y	.	.	.
PNPLA6	10908	broad.mit.edu	36	19	7521271	7521271	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001166111	exon17	c.C1929T	p.F643F	.	.	.
KIAA1543	57662	broad.mit.edu	36	19	7588455	7588455	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080429	exon18	c.G3433A	p.A1145T	.	.	.
STXBP2	6813	broad.mit.edu	36	19	7611692	7611692	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006949	exon5	c.G322A	p.D108N	.	.	.
CLEC4G	339390	broad.mit.edu	36	19	7700348	7700348	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198492	exon9	c.G786A	p.E262E	.	.	.
CLEC4M	10332	broad.mit.edu	36	19	7737059	7737059	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144904	exon4	c.C597A	p.I199I	.	.	.
FBN3	84467	broad.mit.edu	36	19	8043014	8043014	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032447	exon62	c.C8006T	p.S2669L	.	.	.
FBN3	84467	broad.mit.edu	36	19	8077113	8077113	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032447	exon37	c.C4692T	p.I1564I	.	.	.
CD320	51293	broad.mit.edu	36	19	8273692	8273692	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016579	exon4	c.C675T	p.S225S	.	.	.
ANGPTL4	51129	broad.mit.edu	36	19	8342306	8342306	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039667	exon5	c.C825T	p.G275G	.	.	.
HNRNPM	4670	broad.mit.edu	36	19	8459642	8459642	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005968	exon16	c.C2097T	p.F699F	.	.	.
ADAMTS10	81794	broad.mit.edu	36	19	8567280	8567280	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030957	exon10	c.C1101T	p.G367G	.	.	.
MBD3L1	85509	broad.mit.edu	36	19	8814598	8814598	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145208	exon1	c.G244A	p.E82K	.	.	.
MUC16	94025	broad.mit.edu	36	19	8848234	8848234	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon68	c.C41853T	p.I13951I	.	.	.
MUC16	94025	broad.mit.edu	36	19	8889332	8889332	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon11	c.G36460T	p.D12154Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8899404	8899404	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon7	c.C36115T	p.R12039W	.	.	.
MUC16	94025	broad.mit.edu	36	19	8907340	8907340	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon5	c.C35291T	p.S11764F	.	.	.
MUC16	94025	broad.mit.edu	36	19	8907491	8907491	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon5	c.G35140T	p.D11714Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8910838	8910838	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon5	c.C31793A	p.S10598X	.	.	.
MUC16	94025	broad.mit.edu	36	19	8918863	8918863	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon3	c.C29583T	p.F9861F	.	.	.
MUC16	94025	broad.mit.edu	36	19	8919707	8919707	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon3	c.C28739A	p.S9580Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8919850	8919850	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon3	c.C28596A	p.L9532L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8920476	8920476	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon3	c.G27970T	p.E9324X	.	.	.
MUC16	94025	broad.mit.edu	36	19	8928212	8928212	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon3	c.C20234A	p.S6745Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8929130	8929130	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon3	c.A19316C	p.K6439T	.	.	.
MUC16	94025	broad.mit.edu	36	19	8930155	8930155	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon3	c.C18291A	p.F6097L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8931925	8931925	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon3	c.C16521A	p.A5507A	.	.	.
MUC16	94025	broad.mit.edu	36	19	8932670	8932670	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon3	c.C15776A	p.S5259Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8933316	8933316	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon3	c.C15130A	p.L5044M	.	.	.
MUC16	94025	broad.mit.edu	36	19	8934640	8934640	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon3	c.A13806G	p.G4602G	.	.	.
MUC16	94025	broad.mit.edu	36	19	8936788	8936788	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon3	c.G11658T	p.M3886I	.	.	.
MUC16	94025	broad.mit.edu	36	19	8944587	8944587	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon1	c.C8228T	p.S2743L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8944847	8944847	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon1	c.G7968T	p.E2656D	.	.	.
MUC16	94025	broad.mit.edu	36	19	8944978	8944978	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon1	c.G7837A	p.V2613I	.	.	.
MUC16	94025	broad.mit.edu	36	19	8945535	8945535	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon1	c.C7280T	p.S2427F	.	.	.
MUC16	94025	broad.mit.edu	36	19	8945646	8945646	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon1	c.C7169T	p.S2390F	.	.	.
MUC16	94025	broad.mit.edu	36	19	8946065	8946065	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon1	c.C6750A	p.V2250V	.	.	.
MUC16	94025	broad.mit.edu	36	19	8946146	8946146	+	Silent	SNP	G	A	A	rs73495780	by-1000genomes	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon1	c.C6669T	p.S2223S	.	.	.
MUC16	94025	broad.mit.edu	36	19	8946583	8946583	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon1	c.T6232G	p.S2078A	.	.	.
MUC16	94025	broad.mit.edu	36	19	8947714	8947714	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon1	c.T5101C	p.S1701P	.	.	.
MUC16	94025	broad.mit.edu	36	19	8948069	8948069	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon1	c.C4746A	p.S1582S	.	.	.
MUC16	94025	broad.mit.edu	36	19	8949600	8949600	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon1	c.C3215T	p.T1072I	.	.	.
MUC16	94025	broad.mit.edu	36	19	8950541	8950541	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon1	c.A2274G	p.E758E	.	.	.
MUC16	94025	broad.mit.edu	36	19	8950788	8950788	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024690	exon1	c.C2027A	p.S676Y	.	.	.
OR1M1	125963	broad.mit.edu	36	19	9065844	9065844	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004456	exon1	c.G924T	p.K308N	.	.	.
OR7G2	390882	broad.mit.edu	36	19	9074278	9074278	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005193	exon1	c.C705A	p.I235I	.	.	.
OR7G2	390882	broad.mit.edu	36	19	9074680	9074680	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005193	exon1	c.G303T	p.K101N	.	.	.
OR7G1	125962	broad.mit.edu	36	19	9086532	9086532	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005192	exon1	c.A908C	p.K303T	.	.	.
OR7G1	125962	broad.mit.edu	36	19	9086769	9086769	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005192	exon1	c.C671A	p.S224Y	.	.	.
OR7G3	390883	broad.mit.edu	36	19	9097889	9097889	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001958	exon1	c.C738T	p.I246I	.	.	.
ZNF317	57693	broad.mit.edu	36	19	9128967	9128967	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190791	exon4	c.C186T	p.V62V	.	.	.
ZNF317	57693	broad.mit.edu	36	19	9132604	9132604	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190791	exon6	c.G1187A	p.R396Q	.	.	.
OR7D2	162998	broad.mit.edu	36	19	9157968	9157968	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175883	exon1	c.G511T	p.D171Y	.	.	.
OR7D2	162998	broad.mit.edu	36	19	9158079	9158079	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175883	exon1	c.G622A	p.V208I	.	.	.
OR7D4	125958	broad.mit.edu	36	19	9186110	9186110	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005191	exon1	c.T404C	p.I135T	.	.	.
OR7E24	26648	broad.mit.edu	36	19	9223412	9223412	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001079935	exon1	c.G693T	p.G231G	.	.	.
ZNF699	374879	broad.mit.edu	36	19	9274107	9274107	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198535	exon2	c.G122T	p.R41I	.	.	.
ZNF177	7730	broad.mit.edu	36	19	9353371	9353371	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172651	exon6	c.T1364G	p.I455S	.	.	.
ZNF266	10781	broad.mit.edu	36	19	9384994	9384994	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006631	exon11	c.G1607A	p.R536Q	.	.	.
ZNF266	10781	broad.mit.edu	36	19	9385066	9385066	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006631	exon11	c.G1535A	p.R512Q	.	.	.
ZNF266	10781	broad.mit.edu	36	19	9385612	9385612	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006631	exon11	c.G989A	p.G330E	.	.	.
ZNF560	147741	broad.mit.edu	36	19	9438447	9438447	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152476	exon10	c.G2176T	p.D726Y	.	.	.
ZNF560	147741	broad.mit.edu	36	19	9438834	9438834	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152476	exon10	c.G1789T	p.E597X	.	.	.
ZNF426	79088	broad.mit.edu	36	19	9500964	9500964	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024106	exon8	c.G757A	p.E253K	.	.	.
ZNF561	93134	broad.mit.edu	36	19	9582101	9582101	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152289	exon6	c.G1236T	p.L412F	.	.	.
ZNF561	93134	broad.mit.edu	36	19	9582569	9582569	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152289	exon6	c.G768T	p.K256N	.	.	.
ZNF562	54811	broad.mit.edu	36	19	9625066	9625066	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130032	exon6	c.A840C	p.K280N	.	.	.
ZNF846	162993	broad.mit.edu	36	19	9729260	9729260	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077624	exon6	c.G1493A	p.R498Q	.	.	.
ZNF846	162993	broad.mit.edu	36	19	9734997	9734997	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077624	exon3	c.G103T	p.D35Y	.	.	.
FBXL12	54850	broad.mit.edu	36	19	9783118	9783118	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017703	exon3	c.G435T	p.Q145H	.	.	.
OLFM2	93145	broad.mit.edu	36	19	9826083	9826083	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_058164	exon6	c.G1144A	p.V382M	.	.	.
CNN2	1265	broad.mit.edu	36	19	987489	987489	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_201277	exon5	c.G465T	p.K155N	.	.	.
COL5A3	50509	broad.mit.edu	36	19	9932203	9932203	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015719	exon67	c.G5122A	p.E1708K	.	.	.
COL5A3	50509	broad.mit.edu	36	19	9942910	9942910	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015719	exon52	c.C3799A	p.L1267I	.	.	.
COL5A3	50509	broad.mit.edu	36	19	9946048	9946048	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015719	exon46	c.G3379T	p.G1127C	.	.	.
COL5A3	50509	broad.mit.edu	36	19	9973446	9973446	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015719	exon7	c.G961T	p.E321X	.	.	.
COL5A3	50509	broad.mit.edu	36	19	9975298	9975298	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015719	exon6	c.G792T	p.R264S	.	.	.
RDH8	50700	broad.mit.edu	36	19	9988844	9988844	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015725	exon2	c.C215T	p.S72L	.	.	.
SLC7A13	157724	broad.mit.edu	36	8	87311604	87311604	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138817	exon1	c.19delA	p.I7fs	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100095201	100095201	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152564	exon2	c.G9T	p.E3D	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100192531	100192531	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152564	exon6	c.A610C	p.N204H	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100229409	100229409	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152564	exon14	c.G2008T	p.E670X	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100238147	100238147	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152564	exon15	c.G2208A	p.K736K	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100355717	100355717	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152564	exon18	c.A2631C	p.K877N	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100781313	100781313	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152564	exon36	c.T6431G	p.V2144G	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100801751	100801751	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152564	exon38	c.C6660A	p.V2220V	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100802270	100802270	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152564	exon39	c.C6869A	p.S2290Y	.	.	.
RGS22	26166	broad.mit.edu	36	8	101044331	101044331	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015668	exon25	c.C3667A	p.L1223I	.	.	.
RGS22	26166	broad.mit.edu	36	8	101080707	101080707	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015668	exon19	c.T2908C	p.F970L	.	.	.
RGS22	26166	broad.mit.edu	36	8	101087442	101087442	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015668	exon16	c.G2433T	p.E811D	.	.	.
RGS22	26166	broad.mit.edu	36	8	101145232	101145232	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015668	exon8	c.G940T	p.E314X	.	.	.
RGS22	26166	broad.mit.edu	36	8	101186783	101186783	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015668	exon2	c.G49T	p.E17X	.	.	.
FBXO43	286151	broad.mit.edu	36	8	101223550	101223550	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001029860	exon2	c.G108A	p.S36S	.	.	.
SPAG1	6674	broad.mit.edu	36	8	101312572	101312572	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003114	exon15	c.T1868G	p.F623C	.	.	.
RNF19A	25897	broad.mit.edu	36	8	101340549	101340549	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015435	exon11	c.G1928A	p.R643Q	.	.	.
RNF19A	25897	broad.mit.edu	36	8	101351298	101351298	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015435	exon5	c.G1003A	p.E335K	.	.	.
RNF19A	25897	broad.mit.edu	36	8	101356407	101356407	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015435	exon4	c.G833T	p.R278I	.	.	.
GRHL2	79977	broad.mit.edu	36	8	102658904	102658904	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024915	exon7	c.G984A	p.K328K	.	.	.
UBR5	51366	broad.mit.edu	36	8	103386637	103386637	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015902	exon21	c.G2679T	p.M893I	.	.	.
UBR5	51366	broad.mit.edu	36	8	103423937	103423937	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015902	exon9	c.G1038T	p.K346N	.	.	.
UBR5	51366	broad.mit.edu	36	8	103443012	103443012	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015902	exon2	c.G81T	p.E27D	.	.	.
ODF1	4956	broad.mit.edu	36	8	103633215	103633215	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024410	exon1	c.C84T	p.I28I	.	.	.
PRSS55	203074	broad.mit.edu	36	8	10424493	10424493	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001197020	exon2	c.C221T	p.A74V	.	.	.
PRSS55	203074	broad.mit.edu	36	8	10433531	10433531	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198464	exon5	c.C877A	p.L293I	.	.	.
PRSS55	203074	broad.mit.edu	36	8	10433595	10433595	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198464	exon5	c.C941A	p.S314Y	.	.	.
FZD6	8323	broad.mit.edu	36	8	104405976	104405976	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164615	exon4	c.G466T	p.D156Y	.	.	.
FZD6	8323	broad.mit.edu	36	8	104406743	104406743	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164615	exon4	c.G1233T	p.K411N	.	.	.
CTHRC1	115908	broad.mit.edu	36	8	104459507	104459507	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138455	exon3	c.G449A	p.R150K	.	.	.
SLC25A32	81034	broad.mit.edu	36	8	104489144	104489144	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030780	exon2	c.C199T	p.H67Y	.	.	.
DCAF13	25879	broad.mit.edu	36	8	104501772	104501772	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015420	exon2	c.C631A	p.L211I	.	.	.
DCAF13	25879	broad.mit.edu	36	8	104502472	104502472	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015420	exon3	c.A820G	p.T274A	.	.	.
RIMS2	9699	broad.mit.edu	36	8	104967244	104967244	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100117	exon4	c.G1241T	p.R414I	.	.	.
RIMS2	9699	broad.mit.edu	36	8	104993496	104993496	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100117	exon6	c.T1732G	p.L578V	.	.	.
RP1L1	94137	broad.mit.edu	36	8	10503099	10503099	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178857	exon4	c.G5919T	p.E1973D	.	.	.
RP1L1	94137	broad.mit.edu	36	8	10505714	10505714	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178857	exon4	c.G3304A	p.E1102K	.	.	.
RIMS2	9699	broad.mit.edu	36	8	105070732	105070732	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100117	exon17	c.G2951A	p.R984Q	.	.	.
RP1L1	94137	broad.mit.edu	36	8	10507255	10507255	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178857	exon4	c.A1763G	p.D588G	.	.	.
RP1L1	94137	broad.mit.edu	36	8	10507791	10507791	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178857	exon4	c.G1227A	p.T409T	.	.	.
RIMS2	9699	broad.mit.edu	36	8	105330925	105330925	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100117	exon22	c.A3624G	p.G1208G	.	.	.
DPYS	1807	broad.mit.edu	36	8	105528835	105528835	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001385	exon3	c.G496T	p.D166Y	.	.	.
LRP12	29967	broad.mit.edu	36	8	105576611	105576611	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013437	exon6	c.C1583A	p.S528X	.	.	.
LRP12	29967	broad.mit.edu	36	8	105580755	105580755	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013437	exon4	c.C441A	p.I147I	.	.	.
SOX7	83595	broad.mit.edu	36	8	10620829	10620829	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031439	exon2	c.C996T	p.F332F	.	.	.
ZFPM2	23414	broad.mit.edu	36	8	106884108	106884108	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012082	exon8	c.G2622T	p.Q874H	.	.	.
ZFPM2	23414	broad.mit.edu	36	8	106884237	106884237	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012082	exon8	c.G2751A	p.E917E	.	.	.
OXR1	55074	broad.mit.edu	36	8	107784457	107784457	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181354	exon6	c.G802T	p.E268X	.	.	.
OXR1	55074	broad.mit.edu	36	8	107787787	107787787	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181354	exon7	c.G841T	p.D281Y	.	.	.
ANGPT1	284	broad.mit.edu	36	8	108578854	108578854	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146	exon1	c.C109A	p.Q37K	.	.	.
TTC35	9694	broad.mit.edu	36	8	109567926	109567926	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014673	exon11	c.C817T	p.R273X	.	.	.
TRHR	7201	broad.mit.edu	36	8	110169602	110169602	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003301	exon1	c.G685T	p.E229X	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110526472	110526472	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_177531	exon38	c.C5198T	p.A1733V	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110526767	110526767	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_177531	exon38	c.C5493T	p.P1831P	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110541172	110541172	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_177531	exon47	c.T7177G	p.L2393V	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110557935	110557935	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_177531	exon52	c.C8780A	p.S2927X	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110573305	110573305	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_177531	exon62	c.G10142A	p.R3381Q	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110589198	110589198	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_177531	exon69	c.G11125A	p.G3709R	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110596615	110596615	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_177531	exon72	c.T11594C	p.L3865S	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110599744	110599744	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_177531	exon73	c.C11862A	p.T3954T	.	.	.
SYBU	55638	broad.mit.edu	36	8	110724305	110724305	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099756	exon1	c.G48T	p.E16D	.	.	.
MTMR9	66036	broad.mit.edu	36	8	11199862	11199862	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015458	exon4	c.C520T	p.R174W	.	.	.
FAM167A	83648	broad.mit.edu	36	8	11319498	11319498	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_053279	exon3	c.G439A	p.D147N	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113318635	113318635	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198123	exon67	c.C10587T	p.N3529N	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113362678	113362678	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198123	exon59	c.G9409T	p.V3137F	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113418154	113418154	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198123	exon44	c.G6922T	p.D2308Y	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113720276	113720276	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198123	exon21	c.T3351C	p.H1117H	.	.	.
CSMD3	114788	broad.mit.edu	36	8	114003105	114003105	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198123	exon10	c.C1560T	p.G520G	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116701446	116701446	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014112	exon3	c.G54T	p.K18N	.	.	.
FDFT1	2222	broad.mit.edu	36	8	11716732	11716732	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004462	exon4	c.G446T	p.R149I	.	.	.
CTSB	1508	broad.mit.edu	36	8	11740099	11740099	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_147781	exon11	c.G964A	p.E322K	.	.	.
CTSB	1508	broad.mit.edu	36	8	11742702	11742702	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_147781	exon8	c.G571A	p.V191I	.	.	.
UTP23	84294	broad.mit.edu	36	8	117853013	117853013	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032334	exon3	c.C501A	p.V167V	.	.	.
RAD21	5885	broad.mit.edu	36	8	117938094	117938094	+	Silent	SNP	G	A	A	rs34653007	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006265	exon7	c.C786T	p.D262D	.	.	.
SLC30A8	169026	broad.mit.edu	36	8	118252567	118252567	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173851	exon7	c.C943A	p.L315I	.	.	.
SLC30A8	169026	broad.mit.edu	36	8	118254029	118254029	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173851	exon8	c.A1038C	p.S346S	.	.	.
DEFB135	613209	broad.mit.edu	36	8	11879342	11879342	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001033017	exon2	c.G68A	p.R23K	.	.	.
DEFB134	613211	broad.mit.edu	36	8	11891139	11891139	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001033019	exon1	c.C31A	p.L11I	.	.	.
COLEC10	10584	broad.mit.edu	36	8	120187312	120187312	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006438	exon6	c.C535T	p.R179W	.	.	.
USP17L2	377630	broad.mit.edu	36	8	12033186	12033186	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_201402	exon1	c.C493A	p.L165I	.	.	.
NOV	4856	broad.mit.edu	36	8	120504283	120504283	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002514	exon5	c.G804T	p.K268N	.	.	.
ENPP2	5168	broad.mit.edu	36	8	120675279	120675279	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130863	exon12	c.G975T	p.M325I	.	.	.
ENPP2	5168	broad.mit.edu	36	8	120698957	120698957	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130863	exon6	c.C507A	p.F169L	.	.	.
ENPP2	5168	broad.mit.edu	36	8	120719846	120719846	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130863	exon2	c.G136A	p.V46M	.	.	.
TAF2	6873	broad.mit.edu	36	8	120862570	120862570	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003184	exon17	c.G2157T	p.M719I	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121280956	121280956	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021110	exon8	c.C847T	p.R283C	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121285212	121285212	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021110	exon9	c.G961A	p.D321N	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121285281	121285281	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021110	exon9	c.G1030T	p.E344X	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121351498	121351498	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021110	exon26	c.A3117G	p.G1039G	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121359562	121359562	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021110	exon27	c.G3245T	p.R1082I	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121365109	121365109	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021110	exon32	c.G3878A	p.R1293Q	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121396983	121396983	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021110	exon39	c.G4582T	p.D1528Y	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121426905	121426905	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021110	exon45	c.G4999T	p.A1667S	.	.	.
MTBP	27085	broad.mit.edu	36	8	121526975	121526975	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022045	exon1	c.G84T	p.E28D	.	.	.
MTBP	27085	broad.mit.edu	36	8	121599502	121599502	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022045	exon19	c.G2477T	p.R826I	.	.	.
HAS2	3037	broad.mit.edu	36	8	122696061	122696061	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005328	exon4	c.G1128T	p.M376I	.	.	.
HAS2	3037	broad.mit.edu	36	8	122696125	122696125	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005328	exon4	c.G1064A	p.S355N	.	.	.
WDR67	93594	broad.mit.edu	36	8	124222183	124222183	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145647	exon18	c.A2501T	p.N834I	.	.	.
FAM83A	84985	broad.mit.edu	36	8	124273241	124273241	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032899	exon2	c.G498T	p.M166I	.	.	.
ZHX1	11244	broad.mit.edu	36	8	124336838	124336838	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001017926	exon3	c.C530A	p.S177Y	.	.	.
ATAD2	29028	broad.mit.edu	36	8	124417821	124417821	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014109	exon22	c.G3184T	p.E1062X	.	.	.
ATAD2	29028	broad.mit.edu	36	8	124419167	124419167	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014109	exon21	c.G2930A	p.R977Q	.	.	.
ATAD2	29028	broad.mit.edu	36	8	124426368	124426368	+	Silent	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014109	exon19	c.T2655A	p.P885P	.	.	.
FBXO32	114907	broad.mit.edu	36	8	124586150	124586150	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_058229	exon8	c.C853A	p.L285M	.	.	.
KLHL38	340359	broad.mit.edu	36	8	124733568	124733568	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001081675	exon1	c.C780A	p.F260L	.	.	.
KLHL38	340359	broad.mit.edu	36	8	124733796	124733796	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001081675	exon1	c.C552T	p.L184L	.	.	.
FAM91A1	157769	broad.mit.edu	36	8	124855522	124855522	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144963	exon2	c.G94T	p.E32X	.	.	.
FAM91A1	157769	broad.mit.edu	36	8	124871127	124871127	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144963	exon15	c.C1372A	p.L458I	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125059012	125059012	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039112	exon10	c.G1045A	p.E349K	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125103015	125103015	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039112	exon17	c.G2058T	p.K686N	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125142011	125142011	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039112	exon24	c.C3027T	p.L1009L	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125142126	125142126	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039112	exon24	c.G3142A	p.E1048K	.	.	.
TMEM65	157378	broad.mit.edu	36	8	125401525	125401525	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_194291	exon6	c.C604T	p.R202C	.	.	.
RNF139	11236	broad.mit.edu	36	8	125568234	125568234	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007218	exon2	c.G1163T	p.R388I	.	.	.
RNF139	11236	broad.mit.edu	36	8	125569005	125569005	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007218	exon2	c.G1934T	p.R645I	.	.	.
SQLE	6713	broad.mit.edu	36	8	126088824	126088824	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003129	exon4	c.A736G	p.I246V	.	.	.
LONRF1	91694	broad.mit.edu	36	8	12630881	12630881	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152271	exon10	c.C1910T	p.S637F	.	.	.
LONRF1	91694	broad.mit.edu	36	8	12638601	12638601	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152271	exon6	c.C1431T	p.F477F	.	.	.
TRIB1	10221	broad.mit.edu	36	8	126517844	126517844	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025195	exon3	c.G1068T	p.Q356H	.	.	.
GSDMC	56169	broad.mit.edu	36	8	130841987	130841987	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031415	exon6	c.G707T	p.R236I	.	.	.
FAM49B	51571	broad.mit.edu	36	8	130937107	130937107	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016623	exon9	c.C370T	p.R124X	.	.	.
ASAP1	50807	broad.mit.edu	36	8	131173493	131173493	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018482	exon24	c.C2480A	p.P827H	.	.	.
ASAP1	50807	broad.mit.edu	36	8	131193598	131193598	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018482	exon23	c.C2325T	p.F775F	.	.	.
ASAP1	50807	broad.mit.edu	36	8	131296094	131296094	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018482	exon4	c.C295A	p.L99I	.	.	.
ADCY8	114	broad.mit.edu	36	8	131861974	131861974	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001115	exon18	c.C3600T	p.V1200V	.	.	.
ADCY8	114	broad.mit.edu	36	8	131991141	131991141	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001115	exon6	c.C1635T	p.I545I	.	.	.
ADCY8	114	broad.mit.edu	36	8	132121081	132121081	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001115	exon1	c.C681T	p.C227C	.	.	.
DLC1	10395	broad.mit.edu	36	8	13295519	13295519	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182643	exon4	c.C1228T	p.R410X	.	.	.
EFR3A	23167	broad.mit.edu	36	8	133051966	133051966	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015137	exon10	c.C1053T	p.F351F	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133265712	133265712	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004519	exon3	c.C562T	p.R188W	.	.	.
PHF20L1	51105	broad.mit.edu	36	8	133896066	133896066	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032205	exon10	c.G933A	p.A311A	.	.	.
PHF20L1	51105	broad.mit.edu	36	8	133920995	133920995	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016018	exon18	c.G2373T	p.K791N	.	.	.
PHF20L1	51105	broad.mit.edu	36	8	133925741	133925741	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016018	exon20	c.C2907T	p.V969V	.	.	.
TG	7038	broad.mit.edu	36	8	133952976	133952976	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003235	exon4	c.G476A	p.R159Q	.	.	.
TG	7038	broad.mit.edu	36	8	133968437	133968437	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003235	exon9	c.G1638A	p.K546K	.	.	.
TG	7038	broad.mit.edu	36	8	133969725	133969725	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003235	exon10	c.G2491T	p.D831Y	.	.	.
TG	7038	broad.mit.edu	36	8	133980285	133980285	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003235	exon14	c.G3278T	p.R1093I	.	.	.
DLC1	10395	broad.mit.edu	36	8	13401585	13401585	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182643	exon2	c.G367A	p.D123N	.	.	.
TG	7038	broad.mit.edu	36	8	134111329	134111329	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003235	exon41	c.T7118G	p.F2373C	.	.	.
SLA	6503	broad.mit.edu	36	8	134141594	134141594	+	5'UTR	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001045557	exon2	c.G45T	p.K15N	.	.	.
TG	7038	broad.mit.edu	36	8	134176575	134176575	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003235	exon42	c.G7345T	p.E2449X	.	.	.
ZFAT	57623	broad.mit.edu	36	8	135602315	135602315	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174157	exon12	c.A3041G	p.K1014R	.	.	.
ZFAT	57623	broad.mit.edu	36	8	135681975	135681975	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174157	exon6	c.C2175T	p.R725R	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139227437	139227437	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015912	exon15	c.G3487T	p.E1163X	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139234217	139234217	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015912	exon13	c.G1683T	p.K561N	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139234433	139234433	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015912	exon13	c.A1467C	p.Q489H	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139234496	139234496	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015912	exon13	c.C1404T	p.S468S	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139249428	139249428	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015912	exon12	c.T1150C	p.Y384H	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139258841	139258841	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015912	exon11	c.G1034A	p.R345Q	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139678365	139678365	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152888	exon62	c.C4396T	p.R1466W	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139765866	139765866	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152888	exon39	c.G2996T	p.G999V	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139914538	139914538	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152888	exon5	c.C771T	p.I257I	.	.	.
KCNK9	51305	broad.mit.edu	36	8	140700398	140700398	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016601	exon2	c.G410A	p.R137H	.	.	.
TRAPPC9	83696	broad.mit.edu	36	8	141518438	141518438	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160372	exon3	c.G625A	p.V209M	.	.	.
DENND3	22898	broad.mit.edu	36	8	142254521	142254521	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014957	exon14	c.C2076A	p.F692L	.	.	.
DENND3	22898	broad.mit.edu	36	8	142254660	142254660	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014957	exon14	c.G2215A	p.A739T	.	.	.
FLJ43860	389690	broad.mit.edu	36	8	142574764	142574764	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207414	exon3	c.C264A	p.A88A	.	.	.
GML	2765	broad.mit.edu	36	8	143924990	143924990	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002066	exon4	c.G359T	p.R120M	.	.	.
TOP1MT	116447	broad.mit.edu	36	8	144471596	144471596	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052963	exon9	c.G1182T	p.K394N	.	.	.
SGCZ	137868	broad.mit.edu	36	8	14456615	14456615	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139167	exon2	c.T231G	p.T77T	.	.	.
PLEC	5339	broad.mit.edu	36	8	145065458	145065458	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_201383	exon32	c.G10531A	p.D3511N	.	.	.
SLC39A4	55630	broad.mit.edu	36	8	145611167	145611167	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130849	exon4	c.C803T	p.T268M	.	.	.
ZNF251	90987	broad.mit.edu	36	8	145919143	145919143	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138367	exon5	c.C711T	p.Y237Y	.	.	.
ZNF251	90987	broad.mit.edu	36	8	145919252	145919252	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138367	exon5	c.G602T	p.R201I	.	.	.
ZNF251	90987	broad.mit.edu	36	8	145919520	145919520	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138367	exon5	c.G334T	p.E112X	.	.	.
TUSC3	7991	broad.mit.edu	36	8	15525068	15525068	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178234	exon2	c.A247C	p.N83H	.	.	.
FGF20	26281	broad.mit.edu	36	8	16895182	16895182	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019851	exon3	c.G406A	p.E136K	.	.	.
CLN8	2055	broad.mit.edu	36	8	1707057	1707057	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018941	exon2	c.C430A	p.L144I	.	.	.
ZDHHC2	51201	broad.mit.edu	36	8	17107571	17107571	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016353	exon7	c.C513A	p.F171L	.	.	.
ZDHHC2	51201	broad.mit.edu	36	8	17107649	17107649	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016353	exon7	c.T591G	p.F197L	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17555268	17555268	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001925	exon10	c.A3072C	p.E1024D	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17617635	17617635	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001925	exon4	c.G2343T	p.Q781H	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17655773	17655773	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001925	exon2	c.G1824T	p.V608V	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17656288	17656288	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001925	exon2	c.A1309C	p.K437Q	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17657385	17657385	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001925	exon2	c.C212A	p.S71Y	.	.	.
PCM1	5108	broad.mit.edu	36	8	17857339	17857339	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006197	exon10	c.G1369T	p.E457X	.	.	.
PCM1	5108	broad.mit.edu	36	8	17858433	17858433	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006197	exon11	c.G1513T	p.E505X	.	.	.
PCM1	5108	broad.mit.edu	36	8	17867953	17867953	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006197	exon19	c.G3021T	p.K1007N	.	.	.
PCM1	5108	broad.mit.edu	36	8	17874275	17874275	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006197	exon23	c.G3742A	p.G1248R	.	.	.
PCM1	5108	broad.mit.edu	36	8	17887790	17887790	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006197	exon26	c.G4324T	p.E1442X	.	.	.
PCM1	5108	broad.mit.edu	36	8	17916375	17916375	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006197	exon36	c.G5587T	p.D1863Y	.	.	.
ASAH1	427	broad.mit.edu	36	8	17959368	17959368	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004315	exon14	c.C1191T	p.F397F	.	.	.
ARHGEF10	9639	broad.mit.edu	36	8	1864093	1864093	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014629	exon24	c.C2791T	p.R931C	.	.	.
PSD3	23362	broad.mit.edu	36	8	18769570	18769570	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015310	exon4	c.G1528T	p.D510Y	.	.	.
PSD3	23362	broad.mit.edu	36	8	18773693	18773693	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015310	exon3	c.G961T	p.D321Y	.	.	.
SH2D4A	63898	broad.mit.edu	36	8	19275404	19275404	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001174160	exon7	c.G866A	p.R289Q	.	.	.
SLC18A1	6570	broad.mit.edu	36	8	20049832	20049832	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003053	exon13	c.C1176A	p.L392L	.	.	.
MYOM2	9172	broad.mit.edu	36	8	2007867	2007867	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003970	exon9	c.G829A	p.D277N	.	.	.
LZTS1	11178	broad.mit.edu	36	8	20154603	20154603	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021020	exon2	c.C1119T	p.F373F	.	.	.
LZTS1	11178	broad.mit.edu	36	8	20156787	20156787	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021020	exon1	c.C186T	p.S62S	.	.	.
EPB49	2039	broad.mit.edu	36	8	21983748	21983748	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114138	exon8	c.C561T	p.I187I	.	.	.
PIWIL2	55124	broad.mit.edu	36	8	22194659	22194659	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018068	exon3	c.C280T	p.P94S	.	.	.
PIWIL2	55124	broad.mit.edu	36	8	22217653	22217653	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018068	exon11	c.C1356A	p.F452L	.	.	.
PPP3CC	5533	broad.mit.edu	36	8	22424547	22424547	+	Missense_Mutation	SNP	G	A	A	rs61756434	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005605	exon5	c.G488A	p.R163Q	.	.	.
PPP3CC	5533	broad.mit.edu	36	8	22445714	22445714	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005605	exon11	c.G1173A	p.R391R	.	.	.
KIAA1967	57805	broad.mit.edu	36	8	22526493	22526493	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021174	exon8	c.G603T	p.K201N	.	.	.
RHOBTB2	23221	broad.mit.edu	36	8	22920285	22920285	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160036	exon7	c.C648T	p.F216F	.	.	.
RHOBTB2	23221	broad.mit.edu	36	8	22920579	22920579	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160036	exon7	c.C942A	p.F314L	.	.	.
TNFRSF10B	8795	broad.mit.edu	36	8	22940707	22940707	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003842	exon7	c.G820T	p.E274X	.	.	.
TNFRSF10B	8795	broad.mit.edu	36	8	22942008	22942008	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003842	exon5	c.G529A	p.E177K	.	.	.
TNFRSF10B	8795	broad.mit.edu	36	8	22943126	22943126	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003842	exon4	c.G418A	p.E140K	.	.	.
TNFRSF10D	8793	broad.mit.edu	36	8	23057992	23057992	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003840	exon7	c.C870A	p.V290V	.	.	.
LOXL2	4017	broad.mit.edu	36	8	23254543	23254543	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002318	exon4	c.T650G	p.I217S	.	.	.
ADAM28	10863	broad.mit.edu	36	8	24213489	24213489	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021777	exon2	c.G104T	p.R35I	.	.	.
ADAM28	10863	broad.mit.edu	36	8	24237393	24237393	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021777	exon9	c.G822T	p.E274D	.	.	.
ADAM7	8756	broad.mit.edu	36	8	24398704	24398704	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003817	exon10	c.G900A	p.V300V	.	.	.
ADAM7	8756	broad.mit.edu	36	8	24402641	24402641	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003817	exon12	c.C1171A	p.L391I	.	.	.
NEFM	4741	broad.mit.edu	36	8	24829053	24829053	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005382	exon2	c.C1111T	p.R371W	.	.	.
DOCK5	80005	broad.mit.edu	36	8	25286048	25286048	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024940	exon35	c.C3581T	p.A1194V	.	.	.
PPP2R2A	5520	broad.mit.edu	36	8	26283648	26283648	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001177591	exon10	c.G1176A	p.S392S	.	.	.
DPYSL2	1808	broad.mit.edu	36	8	26561168	26561168	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001386	exon11	c.G1216A	p.D406N	.	.	.
STMN4	81551	broad.mit.edu	36	8	27155126	27155126	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030795	exon4	c.G175T	p.E59X	.	.	.
PTK2B	2185	broad.mit.edu	36	8	27367994	27367994	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173176	exon30	c.C2763T	p.I921I	.	.	.
CHRNA2	1135	broad.mit.edu	36	8	27376983	27376983	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000742	exon6	c.G894A	p.T298T	.	.	.
CHRNA2	1135	broad.mit.edu	36	8	27380765	27380765	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000742	exon5	c.G347A	p.S116N	.	.	.
CLU	1191	broad.mit.edu	36	8	27513397	27513397	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171138	exon7	c.C1014T	p.L338L	.	.	.
C8orf80	389643	broad.mit.edu	36	8	27981067	27981067	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001010906	exon6	c.G594T	p.W198C	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2807415	2807415	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033225	exon61	c.G9609A	p.R3203R	.	.	.
FBXO16	157574	broad.mit.edu	36	8	28365796	28365796	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172366	exon6	c.G624T	p.K208N	.	.	.
FZD3	7976	broad.mit.edu	36	8	28416561	28416561	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145866	exon2	c.G112T	p.D38Y	.	.	.
FZD3	7976	broad.mit.edu	36	8	28441295	28441295	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145866	exon4	c.G1099A	p.D367N	.	.	.
FZD3	7976	broad.mit.edu	36	8	28441397	28441397	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145866	exon4	c.C1201T	p.R401X	.	.	.
EXTL3	2137	broad.mit.edu	36	8	28630961	28630961	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001440	exon3	c.G1466A	p.R489H	.	.	.
INTS9	55756	broad.mit.edu	36	8	28694323	28694323	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145159	exon11	c.C1143T	p.F381F	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2874422	2874422	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033225	exon51	c.G7682T	p.X2561L	.	.	.
KIF13B	23303	broad.mit.edu	36	8	29023479	29023479	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015254	exon33	c.G3958T	p.A1320S	.	.	.
KIF13B	23303	broad.mit.edu	36	8	29089552	29089552	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015254	exon10	c.G897T	p.K299N	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2987429	2987429	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033225	exon41	c.C6207T	p.F2069F	.	.	.
RBPMS	11030	broad.mit.edu	36	8	30481489	30481489	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008711	exon5	c.G391T	p.E131X	.	.	.
PPP2CB	5516	broad.mit.edu	36	8	30771097	30771097	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001009552	exon5	c.C616T	p.R206C	.	.	.
PPP2CB	5516	broad.mit.edu	36	8	30776604	30776604	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001009552	exon2	c.G312T	p.K104N	.	.	.
TEX15	56154	broad.mit.edu	36	8	30819813	30819813	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031271	exon1	c.T6263C	p.F2088S	.	.	.
TEX15	56154	broad.mit.edu	36	8	30820745	30820745	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031271	exon1	c.G5331T	p.K1777N	.	.	.
TEX15	56154	broad.mit.edu	36	8	30820927	30820927	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031271	exon1	c.C5149T	p.R1717X	.	.	.
TEX15	56154	broad.mit.edu	36	8	30821170	30821170	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031271	exon1	c.G4906T	p.E1636X	.	.	.
TEX15	56154	broad.mit.edu	36	8	30821424	30821424	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031271	exon1	c.C4652T	p.S1551L	.	.	.
TEX15	56154	broad.mit.edu	36	8	30822956	30822956	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031271	exon1	c.C3120A	p.F1040L	.	.	.
TEX15	56154	broad.mit.edu	36	8	30823817	30823817	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031271	exon1	c.T2259G	p.F753L	.	.	.
TEX15	56154	broad.mit.edu	36	8	30824476	30824476	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031271	exon1	c.G1600T	p.E534X	.	.	.
TEX15	56154	broad.mit.edu	36	8	30825142	30825142	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031271	exon1	c.A934G	p.T312A	.	.	.
WRN	7486	broad.mit.edu	36	8	31058097	31058097	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000553	exon9	c.G1012A	p.V338I	.	.	.
WRN	7486	broad.mit.edu	36	8	31060806	31060806	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000553	exon10	c.G1319A	p.S440N	.	.	.
WRN	7486	broad.mit.edu	36	8	31067557	31067557	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000553	exon14	c.G1687T	p.E563X	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3192982	3192982	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033225	exon22	c.C3414T	p.S1138S	.	.	.
NRG1	3084	broad.mit.edu	36	8	32625087	32625087	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013959	exon1	c.C309A	p.I103I	.	.	.
NRG1	3084	broad.mit.edu	36	8	32741117	32741117	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013957	exon12	c.A1569C	p.E523D	.	.	.
FUT10	84750	broad.mit.edu	36	8	33366083	33366083	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032664	exon4	c.C1152T	p.I384I	.	.	.
FUT10	84750	broad.mit.edu	36	8	33430431	33430431	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032664	exon3	c.G221T	p.R74I	.	.	.
MAK16	84549	broad.mit.edu	36	8	33466171	33466171	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032509	exon5	c.C364T	p.R122X	.	.	.
C8orf41	80185	broad.mit.edu	36	8	33480569	33480569	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025115	exon5	c.G1179T	p.E393D	.	.	.
C8orf41	80185	broad.mit.edu	36	8	33489434	33489434	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025115	exon1	c.G240T	p.E80D	.	.	.
C8orf41	80185	broad.mit.edu	36	8	33489506	33489506	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025115	exon1	c.T168C	p.G56G	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35703567	35703567	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080872	exon10	c.G1659A	p.G553G	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36781954	36781954	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031836	exon4	c.G461T	p.G154V	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36812980	36812980	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031836	exon13	c.C1304T	p.S435F	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36886017	36886017	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031836	exon21	c.C2137T	p.R713W	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36886147	36886147	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031836	exon21	c.C2267A	p.S756Y	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36912490	36912490	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031836	exon27	c.T3344G	p.I1115S	.	.	.
ERLIN2	11160	broad.mit.edu	36	8	37728375	37728375	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007175	exon10	c.G723T	p.K241N	.	.	.
RAB11FIP1	80223	broad.mit.edu	36	8	37839577	37839577	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025151	exon5	c.G1944T	p.K648N	.	.	.
RAB11FIP1	80223	broad.mit.edu	36	8	37848072	37848072	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002814	exon4	c.G3406A	p.A1136T	.	.	.
RAB11FIP1	80223	broad.mit.edu	36	8	37851666	37851666	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025151	exon3	c.G1147A	p.E383K	.	.	.
RAB11FIP1	80223	broad.mit.edu	36	8	37853869	37853869	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025151	exon2	c.G730A	p.E244K	.	.	.
DDHD2	23259	broad.mit.edu	36	8	38211073	38211073	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164232	exon3	c.A225G	p.K75K	.	.	.
LETM2	137994	broad.mit.edu	36	8	38376996	38376996	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144652	exon4	c.T410G	p.F137C	.	.	.
FGFR1	2260	broad.mit.edu	36	8	38392570	38392570	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001174065	exon13	c.G1823A	p.G608D	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3842885	3842885	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033225	exon5	c.G766T	p.E256X	.	.	.
ADAM9	8754	broad.mit.edu	36	8	38984628	38984628	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003816	exon2	c.G164T	p.R55I	.	.	.
ADAM9	8754	broad.mit.edu	36	8	39068017	39068017	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003816	exon20	c.G2293T	p.E765X	.	.	.
ADAM32	203102	broad.mit.edu	36	8	39210616	39210616	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145004	exon16	c.G1676A	p.R559Q	.	.	.
ADAM18	8749	broad.mit.edu	36	8	39615205	39615205	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014237	exon10	c.G892T	p.D298Y	.	.	.
ADAM18	8749	broad.mit.edu	36	8	39622020	39622020	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014237	exon11	c.G916T	p.D306Y	.	.	.
ADAM18	8749	broad.mit.edu	36	8	39644725	39644725	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014237	exon14	c.T1378G	p.F460V	.	.	.
ADAM18	8749	broad.mit.edu	36	8	39656853	39656853	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014237	exon16	c.G1772A	p.G591E	.	.	.
ADAM2	2515	broad.mit.edu	36	8	39764846	39764846	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001464	exon9	c.G724A	p.E242K	.	.	.
ADAM2	2515	broad.mit.edu	36	8	39797761	39797761	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001464	exon6	c.A430C	p.K144Q	.	.	.
IDO2	169355	broad.mit.edu	36	8	39925936	39925936	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_194294	exon2	c.C134T	p.S45F	.	.	.
ZMAT4	79698	broad.mit.edu	36	8	40802254	40802254	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024645	exon2	c.C99T	p.Y33Y	.	.	.
AGPAT6	137964	broad.mit.edu	36	8	41586443	41586443	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178819	exon4	c.C348T	p.F116F	.	.	.
ANK1	286	broad.mit.edu	36	8	41678278	41678278	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020475	exon22	c.G2408A	p.R803Q	.	.	.
MYST3	7994	broad.mit.edu	36	8	41909730	41909730	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001099413	exon18	c.A5165C	p.E1722A	.	.	.
MYST3	7994	broad.mit.edu	36	8	41910673	41910673	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001099413	exon18	c.G4222A	p.E1408K	.	.	.
MYST3	7994	broad.mit.edu	36	8	41918083	41918083	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001099413	exon16	c.G2473T	p.D825Y	.	.	.
MYST3	7994	broad.mit.edu	36	8	41925922	41925922	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001099413	exon11	c.G1715T	p.R572I	.	.	.
PLAT	5327	broad.mit.edu	36	8	42156698	42156698	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033011	exon11	c.G1128T	p.E376D	.	.	.
IKBKB	3551	broad.mit.edu	36	8	42296007	42296007	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190720	exon13	c.C1421A	p.S474Y	.	.	.
POLB	5423	broad.mit.edu	36	8	42333875	42333875	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002690	exon8	c.C454T	p.R152C	.	.	.
POLB	5423	broad.mit.edu	36	8	42348249	42348249	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002690	exon14	c.G925T	p.E309X	.	.	.
CHRNB3	1142	broad.mit.edu	36	8	42683098	42683098	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000749	exon2	c.G134A	p.R45H	.	.	.
CHRNB3	1142	broad.mit.edu	36	8	42705982	42705982	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000749	exon5	c.C375T	p.F125F	.	.	.
CHRNB3	1142	broad.mit.edu	36	8	42706182	42706182	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000749	exon5	c.G575T	p.R192I	.	.	.
HOOK3	84376	broad.mit.edu	36	8	42880523	42880523	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032410	exon2	c.G108A	p.T36T	.	.	.
HOOK3	84376	broad.mit.edu	36	8	42961090	42961090	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032410	exon15	c.G1527T	p.E509D	.	.	.
HOOK3	84376	broad.mit.edu	36	8	42971903	42971903	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032410	exon16	c.A1586C	p.K529T	.	.	.
KIAA0146	23514	broad.mit.edu	36	8	48748962	48748962	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080394	exon11	c.C1591T	p.H531Y	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48912522	48912522	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001081640	exon57	c.G7564A	p.E2522K	.	.	.
PRKDC	5591	broad.mit.edu	36	8	49002919	49002919	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001081640	exon20	c.G2224T	p.E742X	.	.	.
EFCAB1	79645	broad.mit.edu	36	8	49804225	49804225	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024593	exon5	c.G505T	p.D169Y	.	.	.
C8orf22	492307	broad.mit.edu	36	8	50149195	50149195	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001007176	exon3	c.C80A	p.S27Y	.	.	.
SNTG1	54212	broad.mit.edu	36	8	51577903	51577903	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018967	exon9	c.C376T	p.R126W	.	.	.
SNTG1	54212	broad.mit.edu	36	8	51779745	51779745	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018967	exon16	c.C1071A	p.C357X	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52395920	52395920	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144651	exon22	c.G4237T	p.D1413Y	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52483465	52483465	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144651	exon17	c.T3272C	p.I1091T	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52498778	52498778	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144651	exon14	c.G1705A	p.D569N	.	.	.
PCMTD1	115294	broad.mit.edu	36	8	52906664	52906664	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052937	exon5	c.G599A	p.R200Q	.	.	.
PCMTD1	115294	broad.mit.edu	36	8	52908728	52908728	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052937	exon4	c.G485A	p.R162Q	.	.	.
ST18	9705	broad.mit.edu	36	8	53191429	53191429	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014682	exon25	c.G2962A	p.A988T	.	.	.
ST18	9705	broad.mit.edu	36	8	53201251	53201251	+	Nonsense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014682	exon23	c.T2669G	p.L890X	.	.	.
RB1CC1	9821	broad.mit.edu	36	8	53732301	53732301	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001083617	exon15	c.C2641A	p.L881I	.	.	.
RB1CC1	9821	broad.mit.edu	36	8	53759029	53759029	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001083617	exon4	c.C169T	p.R57X	.	.	.
OPRK1	4986	broad.mit.edu	36	8	54304563	54304563	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000912	exon4	c.C990T	p.Y330Y	.	.	.
RGS20	8601	broad.mit.edu	36	8	55029287	55029287	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170587	exon5	c.G842A	p.R281Q	.	.	.
TCEA1	6917	broad.mit.edu	36	8	55063235	55063235	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_201437	exon4	c.G395A	p.R132Q	.	.	.
TCEA1	6917	broad.mit.edu	36	8	55068839	55068839	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_201437	exon3	c.G199A	p.E67K	.	.	.
RP1	6101	broad.mit.edu	36	8	55696622	55696622	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006269	exon2	c.G543T	p.E181D	.	.	.
RP1	6101	broad.mit.edu	36	8	55699902	55699902	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006269	exon4	c.G907T	p.E303X	.	.	.
RP1	6101	broad.mit.edu	36	8	55702089	55702089	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006269	exon4	c.A3094G	p.N1032D	.	.	.
RP1	6101	broad.mit.edu	36	8	55703472	55703472	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006269	exon4	c.T4477A	p.L1493I	.	.	.
RP1	6101	broad.mit.edu	36	8	55704184	55704184	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006269	exon4	c.G5189T	p.R1730I	.	.	.
TGS1	96764	broad.mit.edu	36	8	56848771	56848771	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024831	exon1	c.C40A	p.L14I	.	.	.
TGS1	96764	broad.mit.edu	36	8	56862024	56862024	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024831	exon4	c.C1013T	p.S338F	.	.	.
TGS1	96764	broad.mit.edu	36	8	56888205	56888205	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024831	exon12	c.C2413A	p.L805I	.	.	.
PLAG1	5324	broad.mit.edu	36	8	57242555	57242555	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114635	exon3	c.C58A	p.H20N	.	.	.
SDR16C5	195814	broad.mit.edu	36	8	57381795	57381795	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138969	exon5	c.C704T	p.T235I	.	.	.
FAM110B	90362	broad.mit.edu	36	8	59222033	59222033	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_147189	exon5	c.C690T	p.I230I	.	.	.
UBXN2B	137886	broad.mit.edu	36	8	59521124	59521124	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077619	exon7	c.T776A	p.I259N	.	.	.
CYP7A1	1581	broad.mit.edu	36	8	59571989	59571989	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000780	exon3	c.C636T	p.F212F	.	.	.
NSMAF	8439	broad.mit.edu	36	8	59677206	59677206	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003580	exon14	c.G1090A	p.G364R	.	.	.
NSMAF	8439	broad.mit.edu	36	8	59710473	59710473	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003580	exon4	c.G241T	p.D81Y	.	.	.
TOX	9760	broad.mit.edu	36	8	59913294	59913294	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014729	exon5	c.C824A	p.T275N	.	.	.
CHD7	55636	broad.mit.edu	36	8	61856238	61856238	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017780	exon3	c.G1791T	p.K597N	.	.	.
CHD7	55636	broad.mit.edu	36	8	61856329	61856329	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017780	exon3	c.G1882T	p.E628X	.	.	.
CHD7	55636	broad.mit.edu	36	8	61897709	61897709	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017780	exon12	c.C3051T	p.G1017G	.	.	.
ASPH	444	broad.mit.edu	36	8	62659112	62659112	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004318	exon15	c.A1007C	p.K336T	.	.	.
TTPA	7274	broad.mit.edu	36	8	64141169	64141169	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000370	exon3	c.C400T	p.R134X	.	.	.
TRIM55	84675	broad.mit.edu	36	8	67209855	67209855	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_184085	exon3	c.G418A	p.E140K	.	.	.
TRIM55	84675	broad.mit.edu	36	8	67227210	67227210	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_184085	exon8	c.G1030T	p.E344X	.	.	.
ADHFE1	137872	broad.mit.edu	36	8	67535170	67535170	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144650	exon13	c.C1236T	p.F412F	.	.	.
VCPIP1	80124	broad.mit.edu	36	8	67709453	67709453	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025054	exon3	c.A3506C	p.N1169T	.	.	.
VCPIP1	80124	broad.mit.edu	36	8	67709712	67709712	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025054	exon3	c.C3247T	p.R1083X	.	.	.
SGK3	23678	broad.mit.edu	36	8	67873343	67873343	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001033578	exon3	c.C109A	p.L37M	.	.	.
C8orf45	157777	broad.mit.edu	36	8	67970985	67970985	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173518	exon11	c.T1306C	p.Y436H	.	.	.
CSPP1	79848	broad.mit.edu	36	8	68170271	68170271	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024790	exon6	c.G700A	p.E234K	.	.	.
CSPP1	79848	broad.mit.edu	36	8	68212386	68212386	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024790	exon15	c.C1954A	p.L652M	.	.	.
CSPP1	79848	broad.mit.edu	36	8	68228907	68228907	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024790	exon17	c.G2208T	p.K736N	.	.	.
ARFGEF1	10565	broad.mit.edu	36	8	68313168	68313168	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006421	exon22	c.G3253T	p.D1085Y	.	.	.
ARFGEF1	10565	broad.mit.edu	36	8	68328348	68328348	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006421	exon18	c.G2590T	p.D864Y	.	.	.
ARFGEF1	10565	broad.mit.edu	36	8	68341954	68341954	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006421	exon12	c.G1738T	p.E580X	.	.	.
SULF1	23213	broad.mit.edu	36	8	70675434	70675434	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128205	exon9	c.G777T	p.W259C	.	.	.
SULF1	23213	broad.mit.edu	36	8	70703012	70703012	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128205	exon18	c.C2095A	p.L699I	.	.	.
SLCO5A1	81796	broad.mit.edu	36	8	70748077	70748077	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146008	exon8	c.G2063T	p.X688L	.	.	.
NCOA2	10499	broad.mit.edu	36	8	71231398	71231398	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006540	exon11	c.T1756C	p.F586L	.	.	.
TRAM1	23471	broad.mit.edu	36	8	71682883	71682883	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014294	exon1	c.C106T	p.L36L	.	.	.
XKR9	389668	broad.mit.edu	36	8	71755955	71755955	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001011720	exon3	c.A108G	p.G36G	.	.	.
XKR9	389668	broad.mit.edu	36	8	71809156	71809156	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001011720	exon5	c.A1065C	p.E355D	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73130281	73130281	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007332	exon12	c.G1473T	p.K491N	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73130511	73130511	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007332	exon11	c.G1328T	p.S443I	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73143937	73143937	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007332	exon3	c.G319T	p.E107X	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73146606	73146606	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007332	exon2	c.G162T	p.K54N	.	.	.
KCNB2	9312	broad.mit.edu	36	8	73642730	73642730	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004770	exon2	c.A207G	p.T69T	.	.	.
KCNB2	9312	broad.mit.edu	36	8	74011231	74011231	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004770	exon3	c.A1087G	p.T363A	.	.	.
TERF1	7013	broad.mit.edu	36	8	74095581	74095581	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017489	exon3	c.T524C	p.L175S	.	.	.
C8orf84	157869	broad.mit.edu	36	8	74142143	74142143	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153225	exon5	c.T782C	p.F261S	.	.	.
TMEM70	54968	broad.mit.edu	36	8	75055969	75055969	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017866	exon3	c.G342A	p.T114T	.	.	.
PI15	51050	broad.mit.edu	36	8	75920016	75920016	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015886	exon4	c.G491T	p.R164I	.	.	.
HNF4G	3174	broad.mit.edu	36	8	76633818	76633818	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004133	exon8	c.C1084T	p.L362L	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77779435	77779435	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024721	exon2	c.C557T	p.S186L	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77779589	77779589	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024721	exon2	c.G711T	p.E237D	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77780752	77780752	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024721	exon2	c.C1874T	p.S625L	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77782655	77782655	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024721	exon3	c.A2910C	p.K970N	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77853108	77853108	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024721	exon4	c.C3203T	p.S1068L	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77927176	77927176	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024721	exon10	c.C5464T	p.P1822S	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77927699	77927699	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024721	exon10	c.C5987T	p.S1996F	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77928628	77928628	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024721	exon10	c.C6916T	p.R2306X	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77930305	77930305	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024721	exon10	c.C8593A	p.L2865I	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77930397	77930397	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024721	exon10	c.C8685T	p.N2895N	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77930868	77930868	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024721	exon10	c.G9156A	p.P3052P	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77938005	77938005	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024721	exon11	c.C9500A	p.P3167H	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77939274	77939274	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024721	exon11	c.A10769C	p.N3590T	.	.	.
IL7	3574	broad.mit.edu	36	8	79811270	79811270	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000880	exon5	c.G408T	p.K136N	.	.	.
STMN2	11075	broad.mit.edu	36	8	80716182	80716182	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007029	exon3	c.C130T	p.Q44X	.	.	.
ZBTB10	65986	broad.mit.edu	36	8	81574340	81574340	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023929	exon2	c.G1029A	p.E343E	.	.	.
ZBTB10	65986	broad.mit.edu	36	8	81574742	81574742	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023929	exon2	c.G1431A	p.V477V	.	.	.
PAG1	55824	broad.mit.edu	36	8	82066306	82066306	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018440	exon5	c.G140A	p.R47Q	.	.	.
PAG1	55824	broad.mit.edu	36	8	82068008	82068008	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018440	exon4	c.G10A	p.A4T	.	.	.
FABP9	646480	broad.mit.edu	36	8	82534117	82534117	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080526	exon2	c.C84T	p.F28F	.	.	.
SLC10A5	347051	broad.mit.edu	36	8	82769002	82769002	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001010893	exon1	c.C761A	p.S254Y	.	.	.
CHMP4C	92421	broad.mit.edu	36	8	82832985	82832985	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152284	exon4	c.G537T	p.K179N	.	.	.
RALYL	138046	broad.mit.edu	36	8	85604164	85604164	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100392	exon3	c.C53T	p.S18F	.	.	.
LRRCC1	85444	broad.mit.edu	36	8	86222988	86222988	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033402	exon7	c.G1019T	p.R340I	.	.	.
LRRCC1	85444	broad.mit.edu	36	8	86234356	86234356	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033402	exon13	c.T1991C	p.V664A	.	.	.
LRRCC1	85444	broad.mit.edu	36	8	86240999	86240999	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033402	exon18	c.T2971G	p.L991V	.	.	.
CA3	761	broad.mit.edu	36	8	86539358	86539358	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005181	exon2	c.G200A	p.R67Q	.	.	.
ATP6V0D2	245972	broad.mit.edu	36	8	87224244	87224244	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152565	exon5	c.A584C	p.K195T	.	.	.
ATP6V0D2	245972	broad.mit.edu	36	8	87231595	87231595	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152565	exon6	c.G778T	p.D260Y	.	.	.
WWP1	11059	broad.mit.edu	36	8	87506624	87506624	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007013	exon10	c.G1118A	p.R373Q	.	.	.
WWP1	11059	broad.mit.edu	36	8	87519970	87519970	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007013	exon17	c.A1790G	p.Y597C	.	.	.
WWP1	11059	broad.mit.edu	36	8	87524061	87524061	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007013	exon18	c.G1936A	p.A646T	.	.	.
CPNE3	8895	broad.mit.edu	36	8	87613865	87613865	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003909	exon6	c.G400T	p.E134X	.	.	.
CPNE3	8895	broad.mit.edu	36	8	87636261	87636261	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003909	exon15	c.A1187C	p.N396T	.	.	.
CNGB3	54714	broad.mit.edu	36	8	87660502	87660502	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019098	exon16	c.G1876A	p.E626K	.	.	.
CNGB3	54714	broad.mit.edu	36	8	87725210	87725210	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019098	exon10	c.C1063T	p.R355X	.	.	.
CNGB3	54714	broad.mit.edu	36	8	87735385	87735385	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019098	exon7	c.A874T	p.K292X	.	.	.
CNGB3	54714	broad.mit.edu	36	8	87752316	87752316	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019098	exon4	c.C465A	p.L155L	.	.	.
MFHAS1	9258	broad.mit.edu	36	8	8787414	8787414	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004225	exon1	c.G565T	p.D189Y	.	.	.
CNBD1	168975	broad.mit.edu	36	8	88435099	88435099	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173538	exon10	c.G1272A	p.E424E	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88954567	88954567	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152418	exon1	c.G749A	p.G250D	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88954923	88954923	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152418	exon1	c.C393A	p.C131X	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88955199	88955199	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152418	exon1	c.C117T	p.F39F	.	.	.
ERI1	90459	broad.mit.edu	36	8	8906528	8906528	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153332	exon3	c.A354T	p.K118N	.	.	.
MMP16	4325	broad.mit.edu	36	8	89198023	89198023	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005941	exon6	c.G912A	p.P304P	.	.	.
NBN	4683	broad.mit.edu	36	8	91027552	91027552	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002485	exon13	c.T2062G	p.F688V	.	.	.
DECR1	1666	broad.mit.edu	36	8	91133139	91133139	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001359	exon9	c.G944T	p.R315I	.	.	.
OTUD6B	51633	broad.mit.edu	36	8	92152631	92152631	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016023	exon2	c.G262T	p.E88X	.	.	.
RUNX1T1	862	broad.mit.edu	36	8	93086663	93086663	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198626	exon7	c.C597T	p.C199C	.	.	.
RUNX1T1	862	broad.mit.edu	36	8	93092417	93092417	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198626	exon6	c.C547A	p.P183T	.	.	.
FAM92A1	137392	broad.mit.edu	36	8	94782703	94782703	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145269	exon2	c.C102T	p.F34F	.	.	.
RBM12B	389677	broad.mit.edu	36	8	94814834	94814834	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_203390	exon3	c.G2981A	p.R994Q	.	.	.
PDP1	54704	broad.mit.edu	36	8	95004998	95004998	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001161779	exon3	c.G1610A	p.R537Q	.	.	.
RAD54B	25788	broad.mit.edu	36	8	95473215	95473215	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012415	exon10	c.A1607C	p.N536T	.	.	.
RAD54B	25788	broad.mit.edu	36	8	95481695	95481695	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012415	exon7	c.G1117T	p.E373X	.	.	.
KIAA1429	25962	broad.mit.edu	36	8	95591214	95591214	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015496	exon15	c.G3757A	p.D1253N	.	.	.
KIAA1429	25962	broad.mit.edu	36	8	95591960	95591960	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015496	exon14	c.C3487T	p.R1163C	.	.	.
KIAA1429	25962	broad.mit.edu	36	8	95592684	95592684	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015496	exon13	c.C3295A	p.L1099I	.	.	.
KIAA1429	25962	broad.mit.edu	36	8	95608288	95608288	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015496	exon8	c.C1360T	p.R454X	.	.	.
ESRP1	54845	broad.mit.edu	36	8	95774135	95774135	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017697	exon14	c.C1875T	p.S625S	.	.	.
DPY19L4	286148	broad.mit.edu	36	8	95865196	95865196	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181787	exon17	c.G1838T	p.R613I	.	.	.
INTS8	55656	broad.mit.edu	36	8	95913473	95913473	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017864	exon6	c.G648A	p.T216T	.	.	.
INTS8	55656	broad.mit.edu	36	8	95917984	95917984	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017864	exon7	c.C810A	p.V270V	.	.	.
CCNE2	9134	broad.mit.edu	36	8	95964290	95964290	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_057749	exon10	c.G838T	p.D280Y	.	.	.
MTERFD1	51001	broad.mit.edu	36	8	97320910	97320910	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015942	exon8	c.C1239A	p.F413L	.	.	.
PTDSS1	9791	broad.mit.edu	36	8	97385517	97385517	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014754	exon7	c.C826T	p.R276X	.	.	.
SDC2	6383	broad.mit.edu	36	8	97690818	97690818	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002998	exon5	c.C472A	p.L158I	.	.	.
MTDH	92140	broad.mit.edu	36	8	98788119	98788119	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178812	exon8	c.C1237A	p.L413I	.	.	.
MATN2	4147	broad.mit.edu	36	8	99108857	99108857	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030583	exon14	c.C1980T	p.I660I	.	.	.
C8orf47	203111	broad.mit.edu	36	8	99170846	99170846	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173549	exon2	c.C425A	p.S142Y	.	.	.
HRSP12	10247	broad.mit.edu	36	8	99184301	99184301	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005836	exon6	c.G359A	p.R120Q	.	.	.
KCNS2	3788	broad.mit.edu	36	8	99509597	99509597	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020697	exon2	c.G214A	p.D72N	.	.	.
USP9Y	8287	broad.mit.edu	36	Y	13396850	13396850	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004654	exon18	c.A2383G	p.K795E	.	.	.
USP9Y	8287	broad.mit.edu	36	Y	13461340	13461340	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004654	exon36	c.G5494T	p.A1832S	.	.	.
KDM5D	8284	broad.mit.edu	36	Y	20329550	20329550	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004653	exon22	c.C3229A	p.L1077I	.	.	.
TBL1Y	90665	broad.mit.edu	36	Y	7002631	7002631	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033284	exon13	c.G925T	p.E309X	.	.	.
SELL	6402	broad.mit.edu	36	1	167937406	167937406	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000655	exon7	c.1039delC	p.L347fs	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180021472	180021472	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000721	exon43	c.5680delA	p.K1894fs	.	.	.
AGL	178	broad.mit.edu	36	1	100151747	100151747	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000645	exon28	c.C3975T	p.S1325S	.	.	.
AGL	178	broad.mit.edu	36	1	100154854	100154854	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000645	exon31	c.G4409A	p.R1470Q	.	.	.
HIAT1	64645	broad.mit.edu	36	1	100306181	100306181	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033055	exon6	c.C547T	p.R183X	.	.	.
SASS6	163786	broad.mit.edu	36	1	100359548	100359548	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194292	exon5	c.C457A	p.L153I	.	.	.
RTCD1	8634	broad.mit.edu	36	1	100529564	100529564	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003729	exon11	c.G1017T	p.K339N	.	.	.
UBE4B	10277	broad.mit.edu	36	1	10083812	10083812	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001105562	exon4	c.G407A	p.R136Q	.	.	.
UBE4B	10277	broad.mit.edu	36	1	10100209	10100209	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001105562	exon8	c.C1302T	p.F434F	.	.	.
EXTL2	2135	broad.mit.edu	36	1	101115821	101115821	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001033025	exon3	c.C232A	p.L78I	.	.	.
EXTL2	2135	broad.mit.edu	36	1	101115965	101115965	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001033025	exon3	c.T88G	p.L30V	.	.	.
SLC30A7	148867	broad.mit.edu	36	1	101204049	101204049	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133496	exon10	c.A1070C	p.N357T	.	.	.
DPH5	51611	broad.mit.edu	36	1	101259867	101259867	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077394	exon3	c.G178T	p.E60X	.	.	.
S1PR1	1901	broad.mit.edu	36	1	101478079	101478079	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001400	exon2	c.G951T	p.E317D	.	.	.
OLFM3	118427	broad.mit.edu	36	1	102042462	102042462	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_058170	exon6	c.C1297A	p.L433I	.	.	.
KIF1B	23095	broad.mit.edu	36	1	10241180	10241180	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015074	exon4	c.G226T	p.D76Y	.	.	.
KIF1B	23095	broad.mit.edu	36	1	10286809	10286809	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_183416	exon21	c.C2979T	p.D993D	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103260993	103260993	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001854	exon8	c.G1138A	p.E380K	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103263667	103263667	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001854	exon7	c.G988T	p.E330X	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103312897	103312897	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001854	exon4	c.G516T	p.E172D	.	.	.
AMY2A	279	broad.mit.edu	36	1	103961718	103961718	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000699	exon1	c.C133T	p.R45X	.	.	.
DFFA	1676	broad.mit.edu	36	1	10451890	10451890	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004401	exon2	c.C229A	p.L77M	.	.	.
NTNG1	22854	broad.mit.edu	36	1	107780845	107780845	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001113226	exon7	c.C1291T	p.R431C	.	.	.
VAV3	10451	broad.mit.edu	36	1	108308978	108308978	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006113	exon1	c.C37A	p.H13N	.	.	.
SLC25A24	29957	broad.mit.edu	36	1	108492526	108492526	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013386	exon7	c.G828T	p.K276N	.	.	.
SLC25A24	29957	broad.mit.edu	36	1	108499147	108499147	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013386	exon6	c.A803C	p.K268T	.	.	.
AKNAD1	254268	broad.mit.edu	36	1	109167723	109167723	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152763	exon12	c.G2047T	p.E683X	.	.	.
AKNAD1	254268	broad.mit.edu	36	1	109192950	109192950	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152763	exon5	c.T1192C	p.F398L	.	.	.
CLCC1	23155	broad.mit.edu	36	1	109287718	109287718	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001048210	exon6	c.G604A	p.E202K	.	.	.
C1orf127	148345	broad.mit.edu	36	1	10931422	10931422	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001170754	exon12	c.C1357A	p.L453I	.	.	.
WDR47	22911	broad.mit.edu	36	1	109325953	109325953	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014969	exon13	c.G2326T	p.D776Y	.	.	.
C1orf127	148345	broad.mit.edu	36	1	10940376	10940376	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001170754	exon7	c.C577T	p.R193X	.	.	.
C1orf194	127003	broad.mit.edu	36	1	109452070	109452070	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001122961	exon2	c.C158T	p.P53L	.	.	.
KIAA1324	57535	broad.mit.edu	36	1	109508836	109508836	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020775	exon3	c.C467T	p.S156L	.	.	.
KIAA1324	57535	broad.mit.edu	36	1	109544956	109544956	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020775	exon21	c.G2884A	p.A962T	.	.	.
SARS	6301	broad.mit.edu	36	1	109581909	109581909	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006513	exon11	c.C1421T	p.A474V	.	.	.
CELSR2	1952	broad.mit.edu	36	1	109605379	109605379	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001408	exon3	c.G4151A	p.R1384H	.	.	.
CELSR2	1952	broad.mit.edu	36	1	109610311	109610311	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001408	exon15	c.C5973T	p.F1991F	.	.	.
SORT1	6272	broad.mit.edu	36	1	109686212	109686212	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002959	exon9	c.C1055A	p.S352Y	.	.	.
CYB561D1	284613	broad.mit.edu	36	1	109839957	109839957	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001134403	exon4	c.C347T	p.S116F	.	.	.
AMIGO1	57463	broad.mit.edu	36	1	109851995	109851995	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020703	exon2	c.G1063A	p.E355K	.	.	.
GNAT2	2780	broad.mit.edu	36	1	109950472	109950472	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005272	exon5	c.G571A	p.V191I	.	.	.
GSTM3	2947	broad.mit.edu	36	1	110081300	110081300	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000849	exon9	c.C594T	p.I198I	.	.	.
GSTM3	2947	broad.mit.edu	36	1	110082250	110082250	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000849	exon6	c.T358C	p.Y120H	.	.	.
MASP2	10747	broad.mit.edu	36	1	11009553	11009553	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006610	exon11	c.C2037T	p.I679I	.	.	.
UBL4B	164153	broad.mit.edu	36	1	110456907	110456907	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_203412	exon1	c.G228T	p.K76N	.	.	.
SLC6A17	388662	broad.mit.edu	36	1	110539780	110539780	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010898	exon10	c.C1542T	p.R514R	.	.	.
RBM15	64783	broad.mit.edu	36	1	110685996	110685996	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022768	exon1	c.C2446A	p.L816I	.	.	.
SLC16A4	9122	broad.mit.edu	36	1	110723260	110723260	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004696	exon6	c.A768C	p.Q256H	.	.	.
KCNA10	3744	broad.mit.edu	36	1	110861873	110861873	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005549	exon1	c.C1060T	p.L354F	.	.	.
KCNA10	3744	broad.mit.edu	36	1	110862479	110862479	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005549	exon1	c.C454T	p.R152W	.	.	.
KCNA2	3737	broad.mit.edu	36	1	110947783	110947783	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004974	exon2	c.C1145T	p.P382L	.	.	.
KCNA3	3738	broad.mit.edu	36	1	111017375	111017375	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002232	exon1	c.C1580T	p.S527L	.	.	.
KCNA3	3738	broad.mit.edu	36	1	111017960	111017960	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002232	exon1	c.A995G	p.D332G	.	.	.
MTOR	2475	broad.mit.edu	36	1	11111591	11111591	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004958	exon41	c.C5719T	p.L1907F	.	.	.
CD53	963	broad.mit.edu	36	1	111240867	111240867	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000560	exon6	c.C493T	p.R165X	.	.	.
C1orf103	55791	broad.mit.edu	36	1	111292368	111292368	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018372	exon4	c.G2046A	p.T682T	.	.	.
C1orf103	55791	broad.mit.edu	36	1	111295992	111295992	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018372	exon2	c.G1037A	p.R346Q	.	.	.
C1orf103	55791	broad.mit.edu	36	1	111296604	111296604	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018372	exon2	c.T425G	p.I142S	.	.	.
C1orf103	55791	broad.mit.edu	36	1	111296931	111296931	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018372	exon2	c.A98G	p.Q33R	.	.	.
CHI3L2	1117	broad.mit.edu	36	1	111575005	111575005	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004000	exon3	c.C189T	p.F63F	.	.	.
CHIA	27159	broad.mit.edu	36	1	111656486	111656486	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_201653	exon4	c.C207T	p.I69I	.	.	.
OVGP1	5016	broad.mit.edu	36	1	111759327	111759327	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002557	exon11	c.A1319C	p.E440A	.	.	.
RAP1A	5906	broad.mit.edu	36	1	112041619	112041619	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010935	exon5	c.G160A	p.E54K	.	.	.
DDX20	11218	broad.mit.edu	36	1	112104912	112104912	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007204	exon5	c.G742A	p.E248K	.	.	.
KCND3	3752	broad.mit.edu	36	1	112124893	112124893	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004980	exon4	c.C1313T	p.S438L	.	.	.
WNT2B	7482	broad.mit.edu	36	1	112859137	112859137	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004185	exon3	c.C244T	p.R82X	.	.	.
MOV10	4343	broad.mit.edu	36	1	113042239	113042239	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020963	exon15	c.G2299A	p.A767T	.	.	.
MOV10	4343	broad.mit.edu	36	1	113042605	113042605	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020963	exon16	c.C2490T	p.I830I	.	.	.
SLC16A1	6566	broad.mit.edu	36	1	113258255	113258255	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166496	exon5	c.C1284T	p.V428V	.	.	.
MAGI3	260425	broad.mit.edu	36	1	114003296	114003296	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152900	exon16	c.G2701T	p.D901Y	.	.	.
MAGI3	260425	broad.mit.edu	36	1	114003358	114003358	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152900	exon16	c.G2763T	p.Q921H	.	.	.
PHTF1	10745	broad.mit.edu	36	1	114054610	114054610	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006608	exon10	c.C1058T	p.S353L	.	.	.
PHTF1	10745	broad.mit.edu	36	1	114068930	114068930	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006608	exon6	c.T597C	p.G199G	.	.	.
PTPN22	26191	broad.mit.edu	36	1	114177271	114177271	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012411	exon14	c.C1873T	p.R625X	.	.	.
BCL2L15	440603	broad.mit.edu	36	1	114225966	114225966	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010922	exon3	c.C426A	p.I142I	.	.	.
HIPK1	204851	broad.mit.edu	36	1	114314217	114314217	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198269	exon13	c.G1766A	p.G589D	.	.	.
OLFML3	56944	broad.mit.edu	36	1	114324724	114324724	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020190	exon2	c.G362A	p.G121D	.	.	.
SYT6	148281	broad.mit.edu	36	1	114484013	114484013	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_205848	exon2	c.C4T	p.P2S	.	.	.
TRIM33	51592	broad.mit.edu	36	1	114741940	114741940	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015906	exon20	c.G3237T	p.E1079D	.	.	.
TRIM33	51592	broad.mit.edu	36	1	114769737	114769737	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015906	exon9	c.C1552A	p.H518N	.	.	.
DENND2C	163259	broad.mit.edu	36	1	114967667	114967667	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198459	exon3	c.C927A	p.I309I	.	.	.
PTCHD2	57540	broad.mit.edu	36	1	11497083	11497083	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020780	exon4	c.C1366T	p.R456C	.	.	.
AMPD1	270	broad.mit.edu	36	1	115017827	115017827	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000036	exon15	c.G2140A	p.E714K	.	.	.
CSDE1	7812	broad.mit.edu	36	1	115068093	115068093	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130523	exon16	c.C1852T	p.R618C	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115203932	115203932	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003176	exon7	c.G502T	p.E168X	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115231779	115231779	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003176	exon15	c.A1200C	p.K400N	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115255701	115255701	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003176	exon18	c.C1504A	p.L502I	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115288521	115288521	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003176	exon24	c.G1965T	p.Q655H	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115289076	115289076	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003176	exon25	c.C2104T	p.R702X	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115291454	115291454	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003176	exon27	c.G2312T	p.R771I	.	.	.
CASQ2	845	broad.mit.edu	36	1	116077101	116077101	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001232	exon5	c.G550T	p.E184X	.	.	.
CASQ2	845	broad.mit.edu	36	1	116082425	116082425	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001232	exon4	c.G475A	p.E159K	.	.	.
SLC22A15	55356	broad.mit.edu	36	1	116364873	116364873	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018420	exon4	c.C442T	p.L148F	.	.	.
SLC22A15	55356	broad.mit.edu	36	1	116371040	116371040	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018420	exon5	c.C602T	p.S201L	.	.	.
ATP1A1	476	broad.mit.edu	36	1	116734989	116734989	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000701	exon10	c.A1285G	p.N429D	.	.	.
ATP1A1	476	broad.mit.edu	36	1	116745325	116745325	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000701	exon20	c.C2769T	p.F923F	.	.	.
CD58	965	broad.mit.edu	36	1	116866081	116866081	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001779	exon4	c.A676C	p.I226L	.	.	.
IGSF3	3321	broad.mit.edu	36	1	116944438	116944438	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001542	exon8	c.C1737T	p.S579S	.	.	.
IGSF3	3321	broad.mit.edu	36	1	116958010	116958010	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001542	exon4	c.C732A	p.F244L	.	.	.
PTGFRN	5738	broad.mit.edu	36	1	117311088	117311088	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020440	exon6	c.A1672C	p.K558Q	.	.	.
CD101	9398	broad.mit.edu	36	1	117345996	117345996	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004258	exon1	c.C34A	p.L12I	.	.	.
CD101	9398	broad.mit.edu	36	1	117354224	117354224	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004258	exon2	c.C273T	p.S91S	.	.	.
CD101	9398	broad.mit.edu	36	1	117357556	117357556	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004258	exon4	c.G847T	p.D283Y	.	.	.
CD101	9398	broad.mit.edu	36	1	117361467	117361467	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004258	exon5	c.G1461T	p.E487D	.	.	.
TTF2	8458	broad.mit.edu	36	1	117417826	117417826	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003594	exon4	c.G239T	p.R80I	.	.	.
TTF2	8458	broad.mit.edu	36	1	117434204	117434204	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003594	exon14	c.C2347A	p.L783I	.	.	.
TTF2	8458	broad.mit.edu	36	1	117445601	117445601	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003594	exon23	c.C3421A	p.L1141I	.	.	.
MAN1A2	10905	broad.mit.edu	36	1	117764747	117764747	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006699	exon5	c.C808A	p.R270R	.	.	.
MTHFR	4524	broad.mit.edu	36	1	11777469	11777469	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005957	exon7	c.G1070A	p.R357H	.	.	.
CLCN6	1185	broad.mit.edu	36	1	11808854	11808854	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021737	exon9	c.G703A	p.D235N	.	.	.
CLCN6	1185	broad.mit.edu	36	1	11811929	11811929	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001286	exon13	c.C1211A	p.S404Y	.	.	.
GDAP2	54834	broad.mit.edu	36	1	118256139	118256139	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017686	exon5	c.C559T	p.R187C	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118310767	118310767	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206996	exon47	c.C6520A	p.P2174T	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118325424	118325424	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_206996	exon43	c.C5996A	p.S1999Y	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118331994	118331994	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206996	exon40	c.G5655T	p.K1885N	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118336762	118336762	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_206996	exon36	c.G5211A	p.Q1737Q	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118360161	118360161	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206996	exon29	c.G4237T	p.D1413Y	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118386167	118386167	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206996	exon21	c.C2836T	p.R946X	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118400008	118400008	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_206996	exon19	c.G2593T	p.E865X	.	.	.
TBX15	6913	broad.mit.edu	36	1	119258277	119258277	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152380	exon6	c.G592T	p.D198Y	.	.	.
WARS2	10352	broad.mit.edu	36	1	119420742	119420742	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201263	exon2	c.G102T	p.K34N	.	.	.
HSD3B2	3284	broad.mit.edu	36	1	119766742	119766742	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001166120	exon4	c.G1095T	p.E365D	.	.	.
HSD3B1	3283	broad.mit.edu	36	1	119851688	119851688	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000862	exon2	c.C66T	p.L22L	.	.	.
ZNF697	90874	broad.mit.edu	36	1	119967151	119967151	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080470	exon3	c.C1338T	p.F446F	.	.	.
HMGCS2	3158	broad.mit.edu	36	1	120112911	120112911	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166107	exon1	c.G80A	p.R27H	.	.	.
REG4	83998	broad.mit.edu	36	1	120144006	120144006	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032044	exon4	c.C168T	p.L56L	.	.	.
ADAM30	11085	broad.mit.edu	36	1	120239542	120239542	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021794	exon1	c.C941A	p.S314Y	.	.	.
ADAM30	11085	broad.mit.edu	36	1	120239624	120239624	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021794	exon1	c.C859T	p.R287C	.	.	.
NOTCH2	4853	broad.mit.edu	36	1	120260762	120260762	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024408	exon34	c.C6106T	p.R2036X	.	.	.
TNFRSF8	943	broad.mit.edu	36	1	12105978	12105978	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001243	exon9	c.C997T	p.P333S	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12265783	12265783	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018156	exon21	c.G5037T	p.K1679N	.	.	.
AADACL3	126767	broad.mit.edu	36	1	12702252	12702252	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001103170	exon2	c.C186T	p.H62H	.	.	.
AADACL3	126767	broad.mit.edu	36	1	12708042	12708042	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001103169	exon3	c.A335C	p.K112T	.	.	.
PRAMEF12	390999	broad.mit.edu	36	1	12758447	12758447	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080830	exon2	c.G462T	p.K154N	.	.	.
PRAMEF1	65121	broad.mit.edu	36	1	12777028	12777028	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023013	exon3	c.G665T	p.R222I	.	.	.
PRAMEF2	65122	broad.mit.edu	36	1	12842417	12842417	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023014	exon3	c.G570A	p.T190T	.	.	.
PRAMEF4	400735	broad.mit.edu	36	1	12864523	12864523	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001009611	exon3	c.A614G	p.N205S	.	.	.
PRAMEF10	343071	broad.mit.edu	36	1	12875406	12875406	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039361	exon4	c.C1353A	p.F451L	.	.	.
PRAMEF8	391002	broad.mit.edu	36	1	12902395	12902395	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012277	exon3	c.T1000G	p.F334V	.	.	.
PRAMEF14	729528	broad.mit.edu	36	1	13320908	13320908	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099854	exon4	c.G1010A	p.G337D	.	.	.
PRDM2	7799	broad.mit.edu	36	1	13980715	13980715	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001007257	exon3	c.A3235G	p.I1079V	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143787113	143787113	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022359	exon1	c.C107T	p.A36V	.	.	.
SEC22B	9554	broad.mit.edu	36	1	143827229	143827229	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004892	exon5	c.C631T	p.R211X	.	.	.
NOTCH2NL	388677	broad.mit.edu	36	1	143992808	143992808	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_203458	exon4	c.C381T	p.F127F	.	.	.
HFE2	148738	broad.mit.edu	36	1	144126872	144126872	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_213653	exon3	c.G334T	p.D112Y	.	.	.
LIX1L	128077	broad.mit.edu	36	1	144203633	144203633	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153713	exon3	c.G498T	p.K166N	.	.	.
LIX1L	128077	broad.mit.edu	36	1	144210102	144210102	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153713	exon6	c.G981A	p.G327G	.	.	.
ITGA10	8515	broad.mit.edu	36	1	144249372	144249372	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003637	exon22	c.T2694G	p.F898L	.	.	.
ITGA10	8515	broad.mit.edu	36	1	144250105	144250105	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003637	exon24	c.G2859T	p.E953D	.	.	.
ANKRD35	148741	broad.mit.edu	36	1	144272939	144272939	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144698	exon10	c.G1270A	p.E424K	.	.	.
ANKRD35	148741	broad.mit.edu	36	1	144273517	144273517	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144698	exon10	c.G1848T	p.E616D	.	.	.
CD160	11126	broad.mit.edu	36	1	144415496	144415496	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007053	exon4	c.C278A	p.S93Y	.	.	.
FMO5	2330	broad.mit.edu	36	1	145139667	145139667	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001461	exon7	c.C874A	p.R292S	.	.	.
CHD1L	9557	broad.mit.edu	36	1	145202707	145202707	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004284	exon7	c.C579T	p.F193F	.	.	.
CHD1L	9557	broad.mit.edu	36	1	145232780	145232780	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004284	exon22	c.C2572A	p.L858I	.	.	.
BCL9	607	broad.mit.edu	36	1	145551482	145551482	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004326	exon5	c.C230T	p.P77L	.	.	.
BCL9	607	broad.mit.edu	36	1	145557328	145557328	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004326	exon8	c.C743A	p.S248Y	.	.	.
GJA8	2703	broad.mit.edu	36	1	145846862	145846862	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005267	exon2	c.C156T	p.F52F	.	.	.
NBPF15	284565	broad.mit.edu	36	1	146861089	146861089	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102663	exon16	c.C1838T	p.S613L	.	.	.
OTUD7B	56957	broad.mit.edu	36	1	148183263	148183263	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020205	exon12	c.A1649T	p.K550M	.	.	.
RPRD2	23248	broad.mit.edu	36	1	148680052	148680052	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015203	exon3	c.G365A	p.R122Q	.	.	.
RPRD2	23248	broad.mit.edu	36	1	148710525	148710525	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015203	exon11	c.C2477A	p.S826Y	.	.	.
TARS2	80222	broad.mit.edu	36	1	148729808	148729808	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025150	exon4	c.C495A	p.F165L	.	.	.
ADAMTSL4	54507	broad.mit.edu	36	1	148792984	148792984	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019032	exon6	c.G893A	p.R298H	.	.	.
ENSA	2029	broad.mit.edu	36	1	148868547	148868547	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207044	exon1	c.G24T	p.E8D	.	.	.
GOLPH3L	55204	broad.mit.edu	36	1	148887677	148887677	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018178	exon5	c.A602C	p.K201T	.	.	.
ARNT	405	broad.mit.edu	36	1	149078696	149078696	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001197325	exon5	c.G286T	p.E96X	.	.	.
FAM63A	55793	broad.mit.edu	36	1	149241573	149241573	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018379	exon3	c.G145T	p.E49X	.	.	.
PRUNE	58497	broad.mit.edu	36	1	149273019	149273019	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021222	exon8	c.G1047T	p.K349N	.	.	.
MLLT11	10962	broad.mit.edu	36	1	149306448	149306448	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006818	exon2	c.G124T	p.D42Y	.	.	.
MLLT11	10962	broad.mit.edu	36	1	149306580	149306580	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006818	exon2	c.G256A	p.E86K	.	.	.
GABPB2	126626	broad.mit.edu	36	1	149332330	149332330	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144618	exon4	c.G315T	p.M105I	.	.	.
POGZ	23126	broad.mit.edu	36	1	149644915	149644915	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145796	exon17	c.C2935T	p.R979C	.	.	.
POGZ	23126	broad.mit.edu	36	1	149667370	149667370	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145796	exon4	c.C427T	p.R143X	.	.	.
THEM4	117145	broad.mit.edu	36	1	150127408	150127408	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_053055	exon4	c.C522T	p.I174I	.	.	.
TCHHL1	126637	broad.mit.edu	36	1	150325787	150325787	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008536	exon3	c.A995G	p.D332G	.	.	.
HRNR	388697	broad.mit.edu	36	1	150459281	150459281	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001009931	exon3	c.C1448A	p.S483Y	.	.	.
HRNR	388697	broad.mit.edu	36	1	150459632	150459632	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001009931	exon3	c.C1097A	p.S366Y	.	.	.
FLG	2312	broad.mit.edu	36	1	150542214	150542214	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002016	exon3	c.C11772A	p.T3924T	.	.	.
FLG	2312	broad.mit.edu	36	1	150542860	150542860	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002016	exon3	c.C11126A	p.S3709Y	.	.	.
FLG	2312	broad.mit.edu	36	1	150543187	150543187	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002016	exon3	c.C10799T	p.T3600I	.	.	.
FLG	2312	broad.mit.edu	36	1	150546633	150546633	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002016	exon3	c.G7353A	p.R2451R	.	.	.
FLG	2312	broad.mit.edu	36	1	150547363	150547363	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002016	exon3	c.C6623T	p.S2208L	.	.	.
FLG	2312	broad.mit.edu	36	1	150549979	150549979	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002016	exon3	c.C4007T	p.S1336F	.	.	.
FLG	2312	broad.mit.edu	36	1	150551146	150551146	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002016	exon3	c.G2840A	p.S947N	.	.	.
FLG	2312	broad.mit.edu	36	1	150551320	150551320	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002016	exon3	c.C2666T	p.S889F	.	.	.
FLG	2312	broad.mit.edu	36	1	150554433	150554433	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002016	exon2	c.C124T	p.R42W	.	.	.
FLG2	388698	broad.mit.edu	36	1	150589741	150589741	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001014342	exon3	c.G7145A	p.S2382N	.	.	.
FLG2	388698	broad.mit.edu	36	1	150590497	150590497	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001014342	exon3	c.G6389T	p.R2130I	.	.	.
FLG2	388698	broad.mit.edu	36	1	150591813	150591813	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001014342	exon3	c.A5073G	p.R1691R	.	.	.
FLG2	388698	broad.mit.edu	36	1	150591934	150591934	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001014342	exon3	c.C4952A	p.S1651Y	.	.	.
FLG2	388698	broad.mit.edu	36	1	150592031	150592031	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001014342	exon3	c.A4855G	p.T1619A	.	.	.
FLG2	388698	broad.mit.edu	36	1	150592509	150592509	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001014342	exon3	c.C4377T	p.S1459S	.	.	.
FLG2	388698	broad.mit.edu	36	1	150593472	150593472	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001014342	exon3	c.C3414A	p.S1138S	.	.	.
FLG2	388698	broad.mit.edu	36	1	150595840	150595840	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001014342	exon3	c.C1046A	p.S349Y	.	.	.
KPRP	448834	broad.mit.edu	36	1	150999611	150999611	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001025231	exon2	c.G923A	p.R308H	.	.	.
LCE1A	353131	broad.mit.edu	36	1	151066628	151066628	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178348	exon1	c.A56C	p.K19T	.	.	.
PGLYRP4	57115	broad.mit.edu	36	1	151582201	151582201	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020393	exon5	c.G461A	p.G154D	.	.	.
C1orf77	26097	broad.mit.edu	36	1	151877448	151877448	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015607	exon3	c.C119T	p.S40L	.	.	.
SLC27A3	11000	broad.mit.edu	36	1	152015641	152015641	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024330	exon2	c.G832A	p.D278N	.	.	.
NUP210L	91181	broad.mit.edu	36	1	152295946	152295946	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207308	exon23	c.G3209T	p.R1070I	.	.	.
UBAP2L	9898	broad.mit.edu	36	1	152507868	152507868	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014847	exon26	c.G2982A	p.E994E	.	.	.
ATP8B2	57198	broad.mit.edu	36	1	152570777	152570777	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005855	exon7	c.C437T	p.A146V	.	.	.
ATP8B2	57198	broad.mit.edu	36	1	152573651	152573651	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005855	exon11	c.G797A	p.R266K	.	.	.
ATP8B2	57198	broad.mit.edu	36	1	152576640	152576640	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005855	exon12	c.G1030A	p.V344I	.	.	.
ATP8B2	57198	broad.mit.edu	36	1	152582393	152582393	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020452	exon16	c.C1733T	p.S578L	.	.	.
KAZ	23254	broad.mit.edu	36	1	15264769	15264769	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_201628	exon8	c.C1155T	p.F385F	.	.	.
SHE	126669	broad.mit.edu	36	1	152728430	152728430	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001010846	exon3	c.C745T	p.P249S	.	.	.
TDRD10	126668	broad.mit.edu	36	1	152783959	152783959	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182499	exon11	c.G862A	p.A288T	.	.	.
CHRNB2	1141	broad.mit.edu	36	1	152810447	152810447	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000748	exon5	c.C524T	p.S175L	.	.	.
CHRNB2	1141	broad.mit.edu	36	1	152810781	152810781	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000748	exon5	c.C858T	p.I286I	.	.	.
ADAR	103	broad.mit.edu	36	1	152841000	152841000	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015841	exon2	c.G742A	p.V248I	.	.	.
ADAR	103	broad.mit.edu	36	1	152841337	152841337	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015841	exon2	c.C405A	p.I135I	.	.	.
KAZ	23254	broad.mit.edu	36	1	15300824	15300824	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_201628	exon11	c.C1746T	p.I582I	.	.	.
KCNN3	3782	broad.mit.edu	36	1	153108800	153108800	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002249	exon1	c.G265A	p.A89T	.	.	.
DCST2	127579	broad.mit.edu	36	1	153269678	153269678	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144622	exon6	c.C873A	p.F291L	.	.	.
DCST1	149095	broad.mit.edu	36	1	153281845	153281845	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143687	exon8	c.T828G	p.V276V	.	.	.
ADAM15	8751	broad.mit.edu	36	1	153295182	153295182	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207195	exon9	c.C747A	p.F249L	.	.	.
ADAM15	8751	broad.mit.edu	36	1	153297232	153297232	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207195	exon14	c.C1698T	p.G566G	.	.	.
THBS3	7059	broad.mit.edu	36	1	153437566	153437566	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007112	exon12	c.C1383T	p.I461I	.	.	.
HCN3	57657	broad.mit.edu	36	1	153519178	153519178	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020897	exon2	c.C631T	p.R211C	.	.	.
PKLR	5313	broad.mit.edu	36	1	153530986	153530986	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000298	exon6	c.C876T	p.S292S	.	.	.
PKLR	5313	broad.mit.edu	36	1	153532089	153532089	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000298	exon3	c.C366T	p.G122G	.	.	.
RUSC1	23623	broad.mit.edu	36	1	153564649	153564649	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014328	exon8	c.G1092A	p.Q364Q	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153607295	153607295	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018489	exon11	c.C6436T	p.R2146X	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153614797	153614797	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018489	exon10	c.C6231T	p.Y2077Y	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153614924	153614924	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018489	exon9	c.C6217T	p.R2073C	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153716334	153716334	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018489	exon3	c.G2951A	p.R984H	.	.	.
YY1AP1	55249	broad.mit.edu	36	1	153915870	153915870	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198906	exon4	c.C277T	p.R93C	.	.	.
GON4L	54856	broad.mit.edu	36	1	153988638	153988638	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037533	exon30	c.A6207G	p.K2069K	.	.	.
GON4L	54856	broad.mit.edu	36	1	154002167	154002167	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032292	exon21	c.G3721T	p.A1241S	.	.	.
GON4L	54856	broad.mit.edu	36	1	154063276	154063276	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032292	exon3	c.G673T	p.D225Y	.	.	.
RIT1	6016	broad.mit.edu	36	1	154136817	154136817	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006912	exon6	c.G646T	p.D216Y	.	.	.
KIAA0907	22889	broad.mit.edu	36	1	154162227	154162227	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014949	exon7	c.G713A	p.G238D	.	.	.
ROBLD3	28956	broad.mit.edu	36	1	154291706	154291706	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145264	exon2	c.G97T	p.A33S	.	.	.
MEX3A	92312	broad.mit.edu	36	1	154313624	154313624	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001093725	exon2	c.G928A	p.D310N	.	.	.
SEMA4A	64218	broad.mit.edu	36	1	154413099	154413099	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022367	exon15	c.G1973A	p.R658Q	.	.	.
RHBG	57127	broad.mit.edu	36	1	154621202	154621202	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020407	exon10	c.G1319A	p.R440Q	.	.	.
IQGAP3	128239	broad.mit.edu	36	1	154788505	154788505	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178229	exon14	c.C1455T	p.F485F	.	.	.
BCAN	63827	broad.mit.edu	36	1	154888689	154888689	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021948	exon8	c.G1323A	p.P441P	.	.	.
NES	10763	broad.mit.edu	36	1	154907138	154907138	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006617	exon4	c.G3466A	p.E1156K	.	.	.
SH2D2A	9047	broad.mit.edu	36	1	155046187	155046187	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001161443	exon5	c.G520T	p.E174X	.	.	.
INSRR	3645	broad.mit.edu	36	1	155082950	155082950	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014215	exon8	c.C1795T	p.R599X	.	.	.
ARHGEF11	9826	broad.mit.edu	36	1	155177811	155177811	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198236	exon35	c.C3491A	p.P1164H	.	.	.
ETV3	2117	broad.mit.edu	36	1	155370577	155370577	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145312	exon4	c.C351A	p.F117L	.	.	.
FCRL5	83416	broad.mit.edu	36	1	155775611	155775611	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031281	exon7	c.G1291T	p.G431X	.	.	.
FCRL3	115352	broad.mit.edu	36	1	155915266	155915266	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052939	exon15	c.T2063G	p.L688R	.	.	.
FCRL3	115352	broad.mit.edu	36	1	155932469	155932469	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052939	exon7	c.C1117T	p.R373X	.	.	.
FCRL3	115352	broad.mit.edu	36	1	155933571	155933571	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052939	exon6	c.C827A	p.S276Y	.	.	.
FCRL2	79368	broad.mit.edu	36	1	156006289	156006289	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030764	exon4	c.C586A	p.H196N	.	.	.
FCRL2	79368	broad.mit.edu	36	1	156006999	156006999	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030764	exon3	c.A134C	p.K45T	.	.	.
CD5L	922	broad.mit.edu	36	1	156069758	156069758	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005894	exon5	c.G887T	p.R296I	.	.	.
CD5L	922	broad.mit.edu	36	1	156072530	156072530	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005894	exon3	c.G95A	p.R32H	.	.	.
CD1D	912	broad.mit.edu	36	1	156419302	156419302	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001766	exon5	c.G618T	p.K206N	.	.	.
CD1A	909	broad.mit.edu	36	1	156491536	156491536	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001763	exon2	c.G97A	p.A33T	.	.	.
CD1C	911	broad.mit.edu	36	1	156527810	156527810	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001765	exon2	c.G324A	p.S108S	.	.	.
OR10T2	128360	broad.mit.edu	36	1	156635244	156635244	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004475	exon1	c.C637A	p.L213M	.	.	.
OR10R2	343406	broad.mit.edu	36	1	156716301	156716301	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004472	exon1	c.A10C	p.I4L	.	.	.
OR6Y1	391112	broad.mit.edu	36	1	156784295	156784295	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005189	exon1	c.G225T	p.E75D	.	.	.
OR10Z1	128368	broad.mit.edu	36	1	156843557	156843557	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004478	exon1	c.G705T	p.K235N	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156876305	156876305	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003126	exon34	c.C4854T	p.D1618D	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156889048	156889048	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003126	exon23	c.C3208T	p.R1070W	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156889789	156889789	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003126	exon22	c.C3087A	p.V1029V	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156905839	156905839	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003126	exon14	c.G1816T	p.D606Y	.	.	.
OR6K2	81448	broad.mit.edu	36	1	156936697	156936697	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005279	exon1	c.G370A	p.A124T	.	.	.
OR6K6	128371	broad.mit.edu	36	1	156991616	156991616	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005184	exon1	c.G387T	p.M129I	.	.	.
OR6N1	128372	broad.mit.edu	36	1	157002510	157002510	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005185	exon1	c.T587C	p.V196A	.	.	.
MNDA	4332	broad.mit.edu	36	1	157082041	157082041	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002432	exon5	c.G611T	p.R204I	.	.	.
MNDA	4332	broad.mit.edu	36	1	157084315	157084315	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002432	exon6	c.T1161G	p.S387R	.	.	.
PYHIN1	149628	broad.mit.edu	36	1	157178674	157178674	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198930	exon5	c.C836T	p.S279F	.	.	.
PYHIN1	149628	broad.mit.edu	36	1	157180221	157180221	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198930	exon6	c.G993T	p.K331N	.	.	.
DNAJC16	23341	broad.mit.edu	36	1	15728300	15728300	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015291	exon2	c.G113A	p.R38Q	.	.	.
CADM3	57863	broad.mit.edu	36	1	157430341	157430341	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021189	exon6	c.C680T	p.S227L	.	.	.
CADM3	57863	broad.mit.edu	36	1	157430446	157430446	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021189	exon6	c.A785C	p.E262A	.	.	.
CADM3	57863	broad.mit.edu	36	1	157436220	157436220	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021189	exon9	c.C1110T	p.I370I	.	.	.
DNAJC16	23341	broad.mit.edu	36	1	15745929	15745929	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015291	exon6	c.G840A	p.T280T	.	.	.
FCER1A	2205	broad.mit.edu	36	1	157542531	157542531	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002001	exon5	c.A461G	p.Y154C	.	.	.
AGMAT	79814	broad.mit.edu	36	1	15782374	15782374	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024758	exon2	c.G376A	p.D126N	.	.	.
FCRL6	343413	broad.mit.edu	36	1	158050663	158050663	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004310	exon8	c.T1104G	p.G368G	.	.	.
CCDC19	25790	broad.mit.edu	36	1	158112984	158112984	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012337	exon10	c.C1338T	p.F446F	.	.	.
CCDC19	25790	broad.mit.edu	36	1	158113814	158113814	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012337	exon9	c.C1107T	p.I369I	.	.	.
TAGLN2	8407	broad.mit.edu	36	1	158156193	158156193	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003564	exon3	c.G237T	p.K79N	.	.	.
IGSF9	57549	broad.mit.edu	36	1	158164602	158164602	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135050	exon19	c.G3200A	p.R1067Q	.	.	.
PIGM	93183	broad.mit.edu	36	1	158266898	158266898	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145167	exon1	c.G1256T	p.R419I	.	.	.
PIGM	93183	broad.mit.edu	36	1	158267602	158267602	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145167	exon1	c.G552T	p.V184V	.	.	.
PIGM	93183	broad.mit.edu	36	1	158268052	158268052	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145167	exon1	c.C102A	p.F34L	.	.	.
ATP1A2	477	broad.mit.edu	36	1	158366583	158366583	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000702	exon12	c.G1529A	p.R510H	.	.	.
ATP1A2	477	broad.mit.edu	36	1	158371962	158371962	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000702	exon16	c.G2230A	p.D744N	.	.	.
ATP1A2	477	broad.mit.edu	36	1	158372263	158372263	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000702	exon17	c.C2295A	p.I765I	.	.	.
ATP1A2	477	broad.mit.edu	36	1	158376140	158376140	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000702	exon21	c.G2927A	p.R976H	.	.	.
ATP1A2	477	broad.mit.edu	36	1	158376370	158376370	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000702	exon22	c.A3006G	p.R1002R	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158395479	158395479	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144699	exon5	c.G589T	p.D197Y	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158400679	158400679	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144699	exon7	c.C888T	p.I296I	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158407736	158407736	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144699	exon11	c.C1563A	p.I521I	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158412531	158412531	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144699	exon16	c.G2337T	p.K779N	.	.	.
CASQ1	844	broad.mit.edu	36	1	158431528	158431528	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001231	exon4	c.G568T	p.D190Y	.	.	.
CASQ1	844	broad.mit.edu	36	1	158435126	158435126	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001231	exon8	c.C864T	p.F288F	.	.	.
DCAF8	50717	broad.mit.edu	36	1	158454122	158454122	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015726	exon14	c.C1678T	p.R560C	.	.	.
COPA	1314	broad.mit.edu	36	1	158559935	158559935	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004371	exon8	c.C616T	p.R206C	.	.	.
SLAMF6	114836	broad.mit.edu	36	1	158723583	158723583	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184714	exon7	c.G886T	p.E296X	.	.	.
SLAMF6	114836	broad.mit.edu	36	1	158726641	158726641	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184714	exon5	c.C767A	p.S256Y	.	.	.
SLAMF6	114836	broad.mit.edu	36	1	158727543	158727543	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184714	exon3	c.C642T	p.C214C	.	.	.
SLAMF6	114836	broad.mit.edu	36	1	158727797	158727797	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001184714	exon3	c.C388A	p.L130M	.	.	.
CD84	8832	broad.mit.edu	36	1	158789813	158789813	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184881	exon4	c.C739A	p.R247S	.	.	.
SLAMF1	6504	broad.mit.edu	36	1	158848909	158848909	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003037	exon6	c.C950A	p.S317Y	.	.	.
SLAMF1	6504	broad.mit.edu	36	1	158873863	158873863	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003037	exon2	c.A157C	p.N53H	.	.	.
F11R	50848	broad.mit.edu	36	1	159237438	159237438	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016946	exon3	c.C237A	p.I79I	.	.	.
ARHGAP30	257106	broad.mit.edu	36	1	159285356	159285356	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001025598	exon12	c.G2079A	p.G693G	.	.	.
PLEKHM2	23207	broad.mit.edu	36	1	15932929	15932929	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015164	exon20	c.C2973T	p.F991F	.	.	.
NIT1	4817	broad.mit.edu	36	1	159355233	159355233	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001185092	exon2	c.C36T	p.F12F	.	.	.
DEDD	9191	broad.mit.edu	36	1	159358768	159358768	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039712	exon6	c.C750A	p.F250L	.	.	.
B4GALT3	8703	broad.mit.edu	36	1	159412467	159412467	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199874	exon3	c.G8A	p.R3Q	.	.	.
ADAMTS4	9507	broad.mit.edu	36	1	159434576	159434576	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005099	exon1	c.C466T	p.R156W	.	.	.
NDUFS2	4720	broad.mit.edu	36	1	159445908	159445908	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004550	exon6	c.G526T	p.E176X	.	.	.
NDUFS2	4720	broad.mit.edu	36	1	159446743	159446743	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004550	exon9	c.G806A	p.R269Q	.	.	.
NR1I3	9970	broad.mit.edu	36	1	159467541	159467541	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001077482	exon7	c.C813A	p.L271L	.	.	.
NR1I3	9970	broad.mit.edu	36	1	159472906	159472906	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001077482	exon2	c.C74T	p.A25V	.	.	.
MPZ	4359	broad.mit.edu	36	1	159543144	159543144	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000530	exon3	c.C426T	p.V142V	.	.	.
FCGR2A	2212	broad.mit.edu	36	1	159746451	159746451	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001136219	exon4	c.G582A	p.T194T	.	.	.
FBLIM1	54751	broad.mit.edu	36	1	15976324	15976324	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017556	exon8	c.C963T	p.I321I	.	.	.
FCGR2C	9103	broad.mit.edu	36	1	159826167	159826167	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_201563	exon3	c.G325A	p.G109R	.	.	.
FCRLB	127943	broad.mit.edu	36	1	159959906	159959906	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002901	exon3	c.C178T	p.L60F	.	.	.
ATF6	22926	broad.mit.edu	36	1	160020472	160020472	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007348	exon4	c.C316T	p.R106W	.	.	.
ATF6	22926	broad.mit.edu	36	1	160194947	160194947	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007348	exon16	c.C1892T	p.S631L	.	.	.
OLFML2B	25903	broad.mit.edu	36	1	160220117	160220117	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015441	exon8	c.T2225C	p.V742A	.	.	.
NOS1AP	9722	broad.mit.edu	36	1	160523810	160523810	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164757	exon3	c.C230A	p.S77X	.	.	.
UHMK1	127933	broad.mit.edu	36	1	160736402	160736402	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175866	exon2	c.C302A	p.S101Y	.	.	.
DDR2	4921	broad.mit.edu	36	1	160991242	160991242	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001014796	exon6	c.C390T	p.I130I	.	.	.
SPEN	23013	broad.mit.edu	36	1	16128553	16128553	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015001	exon11	c.C3231T	p.G1077G	.	.	.
SPEN	23013	broad.mit.edu	36	1	16128648	16128648	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015001	exon11	c.C3326A	p.S1109X	.	.	.
SPEN	23013	broad.mit.edu	36	1	16129337	16129337	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015001	exon11	c.C4015A	p.R1339S	.	.	.
SPEN	23013	broad.mit.edu	36	1	16130511	16130511	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015001	exon11	c.A5189C	p.Y1730S	.	.	.
RGS4	5999	broad.mit.edu	36	1	161305352	161305352	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102445	exon1	c.T4C	p.Y2H	.	.	.
SPEN	23013	broad.mit.edu	36	1	16130889	16130889	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015001	exon11	c.A5567C	p.N1856T	.	.	.
SPEN	23013	broad.mit.edu	36	1	16131521	16131521	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015001	exon11	c.C6199A	p.P2067T	.	.	.
SPEN	23013	broad.mit.edu	36	1	16131660	16131660	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015001	exon11	c.A6338G	p.E2113G	.	.	.
SPEN	23013	broad.mit.edu	36	1	16137872	16137872	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015001	exon14	c.G10777A	p.E3593K	.	.	.
RGS5	8490	broad.mit.edu	36	1	161404743	161404743	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003617	exon2	c.G84T	p.Q28H	.	.	.
NUF2	83540	broad.mit.edu	36	1	161562564	161562564	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031423	exon2	c.G99T	p.K33N	.	.	.
NUF2	83540	broad.mit.edu	36	1	161580191	161580191	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031423	exon10	c.G714T	p.E238D	.	.	.
NUF2	83540	broad.mit.edu	36	1	161582125	161582125	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031423	exon11	c.G841T	p.D281Y	.	.	.
NUF2	83540	broad.mit.edu	36	1	161584247	161584247	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031423	exon12	c.C1019T	p.S340L	.	.	.
CDK11A	728642	broad.mit.edu	36	1	1625916	1625916	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024011	exon14	c.C1497T	p.I499I	.	.	.
RXRG	6258	broad.mit.edu	36	1	163646588	163646588	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006917	exon6	c.G888T	p.E296D	.	.	.
FBXO42	54455	broad.mit.edu	36	1	16449756	16449756	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018994	exon10	c.G2150T	p.R717I	.	.	.
MAEL	84944	broad.mit.edu	36	1	165241212	165241212	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032858	exon8	c.C799T	p.R267X	.	.	.
DUSP27	92235	broad.mit.edu	36	1	165363974	165363974	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080426	exon5	c.C2982T	p.H994H	.	.	.
RCSD1	92241	broad.mit.edu	36	1	165930094	165930094	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052862	exon5	c.C405T	p.S135S	.	.	.
MPZL1	9019	broad.mit.edu	36	1	166008306	166008306	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024569	exon3	c.C429T	p.I143I	.	.	.
ADCY10	55811	broad.mit.edu	36	1	166054071	166054071	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001167749	exon28	c.C3886A	p.L1296I	.	.	.
DCAF6	55827	broad.mit.edu	36	1	166229264	166229264	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001198957	exon6	c.G772T	p.E258X	.	.	.
DCAF6	55827	broad.mit.edu	36	1	166301578	166301578	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198957	exon18	c.A2473G	p.N825D	.	.	.
DCAF6	55827	broad.mit.edu	36	1	166304235	166304235	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198957	exon20	c.G2608A	p.E870K	.	.	.
GPR161	23432	broad.mit.edu	36	1	166332469	166332469	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153832	exon5	c.G1000T	p.E334X	.	.	.
NECAP2	55707	broad.mit.edu	36	1	16647044	16647044	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018090	exon3	c.G286A	p.E96K	.	.	.
TBX19	9095	broad.mit.edu	36	1	166540900	166540900	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005149	exon6	c.G758A	p.G253E	.	.	.
TBX19	9095	broad.mit.edu	36	1	166548804	166548804	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005149	exon8	c.C1287T	p.F429F	.	.	.
NME7	29922	broad.mit.edu	36	1	167558983	167558983	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_197972	exon3	c.G166A	p.E56K	.	.	.
BLZF1	8548	broad.mit.edu	36	1	167614198	167614198	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003666	exon4	c.C475T	p.R159C	.	.	.
C1orf114	57821	broad.mit.edu	36	1	167655012	167655012	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021179	exon4	c.C1078T	p.R360X	.	.	.
F5	2153	broad.mit.edu	36	1	167751406	167751406	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000130	exon24	c.C6428T	p.S2143F	.	.	.
F5	2153	broad.mit.edu	36	1	167776291	167776291	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000130	exon13	c.T4661C	p.V1554A	.	.	.
F5	2153	broad.mit.edu	36	1	167788518	167788518	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000130	exon8	c.C1197T	p.Y399Y	.	.	.
F5	2153	broad.mit.edu	36	1	167791140	167791140	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000130	exon7	c.G1022A	p.R341H	.	.	.
F5	2153	broad.mit.edu	36	1	167792667	167792667	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000130	exon6	c.G793T	p.E265X	.	.	.
SELP	6403	broad.mit.edu	36	1	167831926	167831926	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003005	exon12	c.C1962T	p.Y654Y	.	.	.
SELP	6403	broad.mit.edu	36	1	167849488	167849488	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003005	exon4	c.C549A	p.C183X	.	.	.
NBPF1	55672	broad.mit.edu	36	1	16791014	16791014	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017940	exon7	c.G90A	p.E30E	.	.	.
SELL	6402	broad.mit.edu	36	1	167939071	167939071	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000655	exon6	c.A940G	p.T314A	.	.	.
SELL	6402	broad.mit.edu	36	1	167944288	167944288	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000655	exon3	c.G405T	p.K135N	.	.	.
SELE	6401	broad.mit.edu	36	1	167962494	167962494	+	Missense_Mutation	SNP	G	T	T	rs5355	by-cluster,by-frequency,by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000450	exon11	c.C1723A	p.L575I	.	.	.
C1orf156	92342	broad.mit.edu	36	1	168028590	168028590	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033418	exon2	c.C871A	p.L291I	.	.	.
C1orf112	55732	broad.mit.edu	36	1	168038400	168038400	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018186	exon4	c.C81T	p.F27F	.	.	.
C1orf112	55732	broad.mit.edu	36	1	168039967	168039967	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018186	exon6	c.T440G	p.L147X	.	.	.
SCYL3	57147	broad.mit.edu	36	1	168091634	168091634	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181093	exon12	c.C1401A	p.F467L	.	.	.
SCYL3	57147	broad.mit.edu	36	1	168114569	168114569	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181093	exon3	c.C181T	p.R61C	.	.	.
C1orf129	80133	broad.mit.edu	36	1	169222412	169222412	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025063	exon10	c.C816T	p.I272I	.	.	.
FMO3	2328	broad.mit.edu	36	1	169343535	169343535	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002294	exon4	c.C417A	p.V139V	.	.	.
FMO3	2328	broad.mit.edu	36	1	169353137	169353137	+	Missense_Mutation	SNP	C	A	A	rs28363595	by-frequency	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002294	exon9	c.C1530A	p.F510L	.	.	.
FMO2	2327	broad.mit.edu	36	1	169441213	169441213	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001460	exon7	c.C999A	p.F333L	.	.	.
FMO1	2326	broad.mit.edu	36	1	169503335	169503335	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002021	exon3	c.C162A	p.L54L	.	.	.
FMO4	2329	broad.mit.edu	36	1	169555600	169555600	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002022	exon3	c.A12C	p.K4N	.	.	.
FMO4	2329	broad.mit.edu	36	1	169560034	169560034	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002022	exon5	c.A455G	p.N152S	.	.	.
FMO4	2329	broad.mit.edu	36	1	169577325	169577325	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002022	exon10	c.C1400A	p.T467N	.	.	.
BAT2L2	23215	broad.mit.edu	36	1	169777169	169777169	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015172	exon16	c.C3934T	p.R1312X	.	.	.
MYOC	4653	broad.mit.edu	36	1	169888150	169888150	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000261	exon1	c.G225A	p.Q75Q	.	.	.
VAMP4	8674	broad.mit.edu	36	1	169945457	169945457	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001185127	exon6	c.C313T	p.R105X	.	.	.
METTL13	51603	broad.mit.edu	36	1	170020235	170020235	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014955	exon2	c.C628T	p.R210W	.	.	.
DNM3	26052	broad.mit.edu	36	1	170277802	170277802	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015569	exon8	c.G1023T	p.E341D	.	.	.
DNM3	26052	broad.mit.edu	36	1	170317651	170317651	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015569	exon12	c.C1479A	p.F493L	.	.	.
DNM3	26052	broad.mit.edu	36	1	170328620	170328620	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015569	exon13	c.A1527C	p.K509N	.	.	.
C1orf9	51430	broad.mit.edu	36	1	170824700	170824700	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014283	exon18	c.G1836A	p.E612E	.	.	.
C1orf9	51430	broad.mit.edu	36	1	170825259	170825259	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014283	exon18	c.G2395T	p.V799F	.	.	.
C1orf9	51430	broad.mit.edu	36	1	170825520	170825520	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014283	exon18	c.G2656T	p.D886Y	.	.	.
C1orf9	51430	broad.mit.edu	36	1	170826823	170826823	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014283	exon19	c.G2902T	p.A968S	.	.	.
C1orf9	51430	broad.mit.edu	36	1	170838478	170838478	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014283	exon22	c.G3193T	p.D1065Y	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171769492	171769492	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178527	exon17	c.T2042C	p.I681T	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171771633	171771633	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178527	exon15	c.C1734A	p.F578L	.	.	.
KLHL20	27252	broad.mit.edu	36	1	171951825	171951825	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014458	exon2	c.G20A	p.R7H	.	.	.
CENPL	91687	broad.mit.edu	36	1	172043170	172043170	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127181	exon4	c.G278T	p.R93I	.	.	.
DARS2	55157	broad.mit.edu	36	1	172064124	172064124	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018122	exon3	c.C258T	p.F86F	.	.	.
DARS2	55157	broad.mit.edu	36	1	172089261	172089261	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018122	exon14	c.C1496T	p.S499L	.	.	.
RABGAP1L	9910	broad.mit.edu	36	1	172540821	172540821	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014857	exon11	c.G1398T	p.K466N	.	.	.
PADI2	11240	broad.mit.edu	36	1	17285771	17285771	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007365	exon7	c.C666T	p.F222F	.	.	.
CACYBP	27101	broad.mit.edu	36	1	173245773	173245773	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007214	exon6	c.C493T	p.R165X	.	.	.
TNN	63923	broad.mit.edu	36	1	173313474	173313474	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022093	exon2	c.C297T	p.C99C	.	.	.
TNN	63923	broad.mit.edu	36	1	173319552	173319552	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022093	exon5	c.G1092T	p.E364D	.	.	.
TNN	63923	broad.mit.edu	36	1	173321166	173321166	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022093	exon6	c.C1237T	p.L413L	.	.	.
TNR	7143	broad.mit.edu	36	1	173565888	173565888	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003285	exon21	c.C3738T	p.V1246V	.	.	.
TNR	7143	broad.mit.edu	36	1	173595478	173595478	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003285	exon15	c.C2867A	p.P956H	.	.	.
TNR	7143	broad.mit.edu	36	1	173598489	173598489	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003285	exon14	c.C2787T	p.Y929Y	.	.	.
TNR	7143	broad.mit.edu	36	1	173621975	173621975	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003285	exon8	c.C1593T	p.V531V	.	.	.
TNR	7143	broad.mit.edu	36	1	173642051	173642051	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003285	exon3	c.C423T	p.I141I	.	.	.
PADI1	29943	broad.mit.edu	36	1	17439736	17439736	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013358	exon15	c.G1652A	p.R551H	.	.	.
RFWD2	64326	broad.mit.edu	36	1	174399605	174399605	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022457	exon4	c.G611T	p.R204M	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	174926223	174926223	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021936	exon5	c.G2465A	p.R822K	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	174975949	174975949	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020318	exon14	c.G4145T	p.G1382V	.	.	.
FAM5B	57795	broad.mit.edu	36	1	175509269	175509269	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021165	exon5	c.C692A	p.P231H	.	.	.
FAM5B	57795	broad.mit.edu	36	1	175514513	175514513	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021165	exon7	c.C1204T	p.R402C	.	.	.
FAM5B	57795	broad.mit.edu	36	1	175516732	175516732	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021165	exon8	c.G1797A	p.E599E	.	.	.
FAM5B	57795	broad.mit.edu	36	1	175516881	175516881	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021165	exon8	c.G1946A	p.R649Q	.	.	.
FAM5B	57795	broad.mit.edu	36	1	175517158	175517158	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021165	exon8	c.C2223A	p.F741L	.	.	.
SEC16B	89866	broad.mit.edu	36	1	176194703	176194703	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033127	exon9	c.G1029A	p.T343T	.	.	.
RCC2	55920	broad.mit.edu	36	1	17628212	17628212	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001136204	exon2	c.G356A	p.R119Q	.	.	.
RALGPS2	55103	broad.mit.edu	36	1	177069283	177069283	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152663	exon8	c.G582T	p.K194N	.	.	.
ANGPTL1	9068	broad.mit.edu	36	1	177101312	177101312	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004673	exon3	c.A223G	p.T75A	.	.	.
TOR3A	64222	broad.mit.edu	36	1	177330875	177330875	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022371	exon6	c.G1093T	p.E365X	.	.	.
ABL2	27	broad.mit.edu	36	1	177354445	177354445	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001168239	exon6	c.G1015T	p.E339X	.	.	.
C1orf125	126859	broad.mit.edu	36	1	177727431	177727431	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144696	exon19	c.C2227T	p.R743X	.	.	.
C1orf125	126859	broad.mit.edu	36	1	177769627	177769627	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144696	exon24	c.G2790T	p.E930D	.	.	.
NPHS2	7827	broad.mit.edu	36	1	177792936	177792936	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014625	exon5	c.G587A	p.R196Q	.	.	.
TDRD5	163589	broad.mit.edu	36	1	177887822	177887822	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199085	exon13	c.C2027T	p.A676V	.	.	.
FAM163A	148753	broad.mit.edu	36	1	178049877	178049877	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173509	exon5	c.A434G	p.Y145C	.	.	.
ARHGEF10L	55160	broad.mit.edu	36	1	17820985	17820985	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018125	exon11	c.G982A	p.E328K	.	.	.
CEP350	9857	broad.mit.edu	36	1	178232875	178232875	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014810	exon6	c.C960T	p.N320N	.	.	.
CEP350	9857	broad.mit.edu	36	1	178328587	178328587	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014810	exon34	c.C6724T	p.L2242F	.	.	.
CEP350	9857	broad.mit.edu	36	1	178346855	178346855	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014810	exon38	c.T9290C	p.I3097T	.	.	.
LHX4	89884	broad.mit.edu	36	1	178510113	178510113	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033343	exon6	c.A949G	p.I317V	.	.	.
XPR1	9213	broad.mit.edu	36	1	179047223	179047223	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135669	exon7	c.C739A	p.L247M	.	.	.
XPR1	9213	broad.mit.edu	36	1	179060671	179060671	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135669	exon8	c.G923T	p.R308I	.	.	.
XPR1	9213	broad.mit.edu	36	1	179099576	179099576	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135669	exon11	c.C1416T	p.F472F	.	.	.
XPR1	9213	broad.mit.edu	36	1	179116001	179116001	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135669	exon13	c.C1780T	p.R594W	.	.	.
MR1	3140	broad.mit.edu	36	1	179288112	179288112	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001531	exon5	c.A723C	p.E241D	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179719629	179719629	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000721	exon1	c.G126A	p.T42T	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179719719	179719719	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000721	exon1	c.C216T	p.F72F	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179991053	179991053	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000721	exon28	c.T3886C	p.Y1296H	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180026228	180026228	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000721	exon44	c.G5811T	p.S1937S	.	.	.
NPL	80896	broad.mit.edu	36	1	181041950	181041950	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030769	exon4	c.C190T	p.R64C	.	.	.
DHX9	1660	broad.mit.edu	36	1	181108202	181108202	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001357	exon15	c.C1665A	p.F555L	.	.	.
C1orf14	81626	broad.mit.edu	36	1	181175064	181175064	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030933	exon5	c.G946A	p.E316K	.	.	.
C1orf14	81626	broad.mit.edu	36	1	181176239	181176239	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030933	exon3	c.G618A	p.E206E	.	.	.
LAMC1	3915	broad.mit.edu	36	1	181352642	181352642	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002293	exon8	c.C1545A	p.I515I	.	.	.
LAMC1	3915	broad.mit.edu	36	1	181353902	181353902	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002293	exon11	c.G1988T	p.R663I	.	.	.
LAMC1	3915	broad.mit.edu	36	1	181364463	181364463	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002293	exon18	c.G3235A	p.E1079K	.	.	.
LAMC1	3915	broad.mit.edu	36	1	181368277	181368277	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002293	exon21	c.T3686G	p.I1229S	.	.	.
LAMC1	3915	broad.mit.edu	36	1	181373526	181373526	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002293	exon26	c.G4414T	p.E1472X	.	.	.
LAMC2	3918	broad.mit.edu	36	1	181454182	181454182	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018891	exon4	c.G439A	p.A147T	.	.	.
LAMC2	3918	broad.mit.edu	36	1	181462494	181462494	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018891	exon9	c.C1105T	p.R369C	.	.	.
LAMC2	3918	broad.mit.edu	36	1	181476090	181476090	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018891	exon22	c.A3269G	p.N1090S	.	.	.
NMNAT2	23057	broad.mit.edu	36	1	181529515	181529515	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015039	exon2	c.T122G	p.F41C	.	.	.
SMG7	9887	broad.mit.edu	36	1	181786539	181786539	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001174061	exon20	c.A3038G	p.H1013R	.	.	.
APOBEC4	403314	broad.mit.edu	36	1	181884092	181884092	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_203454	exon2	c.C448A	p.L150I	.	.	.
RGL1	23179	broad.mit.edu	36	1	182120532	182120532	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015149	exon8	c.G893A	p.R298Q	.	.	.
RGL1	23179	broad.mit.edu	36	1	182135991	182135991	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015149	exon12	c.G1420A	p.E474K	.	.	.
RGL1	23179	broad.mit.edu	36	1	182161970	182161970	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015149	exon19	c.G2333A	p.R778H	.	.	.
TSEN15	116461	broad.mit.edu	36	1	182308591	182308591	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052965	exon5	c.C503A	p.S168Y	.	.	.
EDEM3	80267	broad.mit.edu	36	1	182942485	182942485	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025191	exon18	c.C2118T	p.I706I	.	.	.
RNF2	6045	broad.mit.edu	36	1	183323385	183323385	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007212	exon2	c.G77A	p.R26Q	.	.	.
RNF2	6045	broad.mit.edu	36	1	183335625	183335625	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007212	exon6	c.C817T	p.R273X	.	.	.
C1orf25	81627	broad.mit.edu	36	1	183360815	183360815	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030934	exon12	c.C1643A	p.S548Y	.	.	.
C1orf26	54823	broad.mit.edu	36	1	183410500	183410500	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001105518	exon5	c.A598G	p.K200E	.	.	.
C1orf26	54823	broad.mit.edu	36	1	183442459	183442459	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001105518	exon13	c.T1913G	p.L638X	.	.	.
C1orf26	54823	broad.mit.edu	36	1	183457707	183457707	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001105518	exon15	c.C2225T	p.S742L	.	.	.
C1orf26	54823	broad.mit.edu	36	1	183512394	183512394	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001105518	exon18	c.T2544G	p.I848M	.	.	.
IVNS1ABP	10625	broad.mit.edu	36	1	183533805	183533805	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006469	exon15	c.G1914T	p.K638N	.	.	.
IVNS1ABP	10625	broad.mit.edu	36	1	183536286	183536286	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006469	exon11	c.G1148A	p.R383Q	.	.	.
IVNS1ABP	10625	broad.mit.edu	36	1	183544565	183544565	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006469	exon5	c.G347A	p.R116Q	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184213713	184213713	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031935	exon16	c.G2543T	p.R848I	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184289649	184289649	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031935	exon44	c.C6770A	p.S2257X	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184354949	184354949	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031935	exon78	c.C11852T	p.A3951V	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184363951	184363951	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031935	exon83	c.C12809A	p.S4270X	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184373320	184373320	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031935	exon88	c.A13650C	p.Q4550H	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184400871	184400871	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031935	exon98	c.C15262T	p.R5088C	.	.	.
PRG4	10216	broad.mit.edu	36	1	184537381	184537381	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127709	exon4	c.C234T	p.F78F	.	.	.
PRG4	10216	broad.mit.edu	36	1	184547308	184547308	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127709	exon8	c.T3471G	p.A1157A	.	.	.
TPR	7175	broad.mit.edu	36	1	184558085	184558085	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003292	exon45	c.C6449A	p.A2150D	.	.	.
TPR	7175	broad.mit.edu	36	1	184579209	184579209	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003292	exon27	c.G3622T	p.E1208X	.	.	.
TPR	7175	broad.mit.edu	36	1	184580310	184580310	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003292	exon25	c.G3237T	p.Q1079H	.	.	.
TPR	7175	broad.mit.edu	36	1	184591232	184591232	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003292	exon17	c.G2104T	p.E702X	.	.	.
TPR	7175	broad.mit.edu	36	1	184594359	184594359	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003292	exon13	c.C1436A	p.S479X	.	.	.
PTGS2	5743	broad.mit.edu	36	1	184911875	184911875	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000963	exon8	c.G1035A	p.L345L	.	.	.
PTGS2	5743	broad.mit.edu	36	1	184913521	184913521	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000963	exon5	c.C522A	p.I174I	.	.	.
PLA2G4A	5321	broad.mit.edu	36	1	185186474	185186474	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024420	exon13	c.G1327A	p.E443K	.	.	.
IGSF21	84966	broad.mit.edu	36	1	18561263	18561263	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032880	exon5	c.G492A	p.Q164Q	.	.	.
FAM5C	339479	broad.mit.edu	36	1	188470138	188470138	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199051	exon5	c.G711T	p.K237N	.	.	.
FAM5C	339479	broad.mit.edu	36	1	188517419	188517419	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199051	exon3	c.C321A	p.F107L	.	.	.
PAX7	5081	broad.mit.edu	36	1	18935021	18935021	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013945	exon8	c.C1458A	p.S486S	.	.	.
TAS1R2	80834	broad.mit.edu	36	1	19039241	19039241	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152232	exon6	c.C1959A	p.F653L	.	.	.
ALDH4A1	8659	broad.mit.edu	36	1	19075515	19075515	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170726	exon12	c.G1219A	p.A407T	.	.	.
RGS13	6003	broad.mit.edu	36	1	190895104	190895104	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144766	exon6	c.G308T	p.S103I	.	.	.
KIAA1751	85452	broad.mit.edu	36	1	1909875	1909875	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080484	exon4	c.C232T	p.R78W	.	.	.
RGS2	5997	broad.mit.edu	36	1	191046830	191046830	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002923	exon4	c.C371A	p.S124X	.	.	.
TROVE2	6738	broad.mit.edu	36	1	191304863	191304863	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001173524	exon2	c.C56A	p.S19Y	.	.	.
TROVE2	6738	broad.mit.edu	36	1	191312720	191312720	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001173524	exon5	c.C1003A	p.H335N	.	.	.
GLRX2	51022	broad.mit.edu	36	1	191332389	191332389	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016066	exon4	c.G487T	p.E163X	.	.	.
UBR4	23352	broad.mit.edu	36	1	19280608	19280608	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020765	exon103	c.G15055A	p.E5019K	.	.	.
UBR4	23352	broad.mit.edu	36	1	19299541	19299541	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020765	exon89	c.C13137T	p.I4379I	.	.	.
UBR4	23352	broad.mit.edu	36	1	19340598	19340598	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020765	exon57	c.C8318A	p.S2773X	.	.	.
UBR4	23352	broad.mit.edu	36	1	19347693	19347693	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020765	exon50	c.C7445A	p.S2482Y	.	.	.
UBR4	23352	broad.mit.edu	36	1	19351551	19351551	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020765	exon47	c.G6839A	p.R2280H	.	.	.
UBR4	23352	broad.mit.edu	36	1	19352997	19352997	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020765	exon45	c.C6482A	p.S2161Y	.	.	.
UBR4	23352	broad.mit.edu	36	1	19360927	19360927	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020765	exon36	c.G5008T	p.E1670X	.	.	.
UBR4	23352	broad.mit.edu	36	1	19397997	19397997	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020765	exon4	c.C391A	p.L131I	.	.	.
KIAA0090	23065	broad.mit.edu	36	1	19422537	19422537	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015047	exon19	c.C2316A	p.S772S	.	.	.
KIAA0090	23065	broad.mit.edu	36	1	19430425	19430425	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015047	exon16	c.C1861T	p.R621C	.	.	.
KCNT2	343450	broad.mit.edu	36	1	194576168	194576168	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198503	exon16	c.G1709T	p.R570I	.	.	.
CFH	3075	broad.mit.edu	36	1	194915430	194915430	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000186	exon6	c.T674G	p.I225S	.	.	.
CFH	3075	broad.mit.edu	36	1	194925867	194925867	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000186	exon9	c.G1211T	p.R404I	.	.	.
CFH	3075	broad.mit.edu	36	1	194962326	194962326	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000186	exon13	c.C1977T	p.C659C	.	.	.
CFH	3075	broad.mit.edu	36	1	194976402	194976402	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000186	exon18	c.C2813A	p.S938Y	.	.	.
CFH	3075	broad.mit.edu	36	1	194981583	194981583	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000186	exon21	c.A3324T	p.K1108N	.	.	.
CFH	3075	broad.mit.edu	36	1	194982895	194982895	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000186	exon22	c.A3525C	p.E1175D	.	.	.
CFH	3075	broad.mit.edu	36	1	194982962	194982962	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000186	exon22	c.G3592T	p.E1198X	.	.	.
CFHR4	10877	broad.mit.edu	36	1	195123933	195123933	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006684	exon1	c.C30T	p.T10T	.	.	.
CFHR2	3080	broad.mit.edu	36	1	195193698	195193698	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005666	exon4	c.C485T	p.S162L	.	.	.
F13B	2165	broad.mit.edu	36	1	195296188	195296188	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001994	exon5	c.T736G	p.Y246D	.	.	.
ASPM	259266	broad.mit.edu	36	1	195336776	195336776	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018136	exon18	c.G8228A	p.R2743Q	.	.	.
ASPM	259266	broad.mit.edu	36	1	195360636	195360636	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018136	exon12	c.C3155T	p.A1052V	.	.	.
ASPM	259266	broad.mit.edu	36	1	195378337	195378337	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018136	exon3	c.G1668T	p.K556N	.	.	.
ZBTB41	360023	broad.mit.edu	36	1	195416748	195416748	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194314	exon5	c.C1669T	p.R557X	.	.	.
ZBTB41	360023	broad.mit.edu	36	1	195436212	195436212	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194314	exon1	c.A15G	p.R5R	.	.	.
CRB1	23418	broad.mit.edu	36	1	195671000	195671000	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201253	exon9	c.C3384A	p.I1128I	.	.	.
DENND1B	163486	broad.mit.edu	36	1	195747482	195747482	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001195215	exon22	c.C1814T	p.T605M	.	.	.
LHX9	56956	broad.mit.edu	36	1	196153658	196153658	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020204	exon1	c.G82T	p.G28C	.	.	.
LHX9	56956	broad.mit.edu	36	1	196157306	196157306	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020204	exon3	c.C627T	p.G209G	.	.	.
NEK7	140609	broad.mit.edu	36	1	196514720	196514720	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133494	exon7	c.T495C	p.A165A	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196935357	196935357	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002838	exon5	c.G334T	p.D112Y	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196977627	196977627	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080921	exon21	c.G1921T	p.E641X	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196988468	196988468	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080921	exon28	c.G2964T	p.K988N	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196991733	196991733	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080921	exon30	c.C3232A	p.H1078N	.	.	.
ZNF281	23528	broad.mit.edu	36	1	198643840	198643840	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012482	exon2	c.G1617T	p.K539N	.	.	.
ZNF281	23528	broad.mit.edu	36	1	198644627	198644627	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012482	exon2	c.G830A	p.R277Q	.	.	.
KIF14	9928	broad.mit.edu	36	1	198791196	198791196	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014875	exon28	c.G4363T	p.E1455X	.	.	.
KIF14	9928	broad.mit.edu	36	1	198801324	198801324	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014875	exon24	c.T3758G	p.F1253C	.	.	.
KIF14	9928	broad.mit.edu	36	1	198839660	198839660	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014875	exon9	c.G1793A	p.R598Q	.	.	.
KIF14	9928	broad.mit.edu	36	1	198841111	198841111	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014875	exon8	c.G1669A	p.A557T	.	.	.
KIF14	9928	broad.mit.edu	36	1	198844632	198844632	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014875	exon5	c.A1503C	p.K501N	.	.	.
DDX59	83479	broad.mit.edu	36	1	198902093	198902093	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031725	exon2	c.G399A	p.A133A	.	.	.
CAMSAP1L1	23271	broad.mit.edu	36	1	199043147	199043147	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203459	exon3	c.C420T	p.I140I	.	.	.
CACNA1S	779	broad.mit.edu	36	1	199276455	199276455	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000069	exon42	c.G5144T	p.S1715I	.	.	.
CACNA1S	779	broad.mit.edu	36	1	199319051	199319051	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000069	exon10	c.C1255T	p.R419C	.	.	.
CACNA1S	779	broad.mit.edu	36	1	199329737	199329737	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000069	exon3	c.G294A	p.S98S	.	.	.
PKP1	5317	broad.mit.edu	36	1	199564522	199564522	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000299	exon14	c.G2179A	p.D727N	.	.	.
LAD1	3898	broad.mit.edu	36	1	199622441	199622441	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005558	exon3	c.G671T	p.R224I	.	.	.
LMOD1	25802	broad.mit.edu	36	1	200135111	200135111	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012134	exon2	c.G1653T	p.K551N	.	.	.
RNPEP	6051	broad.mit.edu	36	1	200233075	200233075	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020216	exon5	c.A860G	p.D287G	.	.	.
PTPN7	5778	broad.mit.edu	36	1	200393872	200393872	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199797	exon3	c.C525A	p.F175L	.	.	.
PPP1R12B	4660	broad.mit.edu	36	1	200676463	200676463	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002481	exon11	c.G1465T	p.E489X	.	.	.
PPP1R12B	4660	broad.mit.edu	36	1	200731372	200731372	+	Missense_Mutation	SNP	G	A	A	rs3817221	by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002481	exon17	c.G2387A	p.R796Q	.	.	.
SYT2	127833	broad.mit.edu	36	1	200837736	200837736	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_177402	exon6	c.G706T	p.D236Y	.	.	.
SYT2	127833	broad.mit.edu	36	1	200838198	200838198	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_177402	exon5	c.G564T	p.K188N	.	.	.
OTUD3	23252	broad.mit.edu	36	1	20104062	20104062	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015207	exon6	c.G830T	p.R277I	.	.	.
RABIF	5877	broad.mit.edu	36	1	201116762	201116762	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002871	exon2	c.C339A	p.F113L	.	.	.
ADIPOR1	51094	broad.mit.edu	36	1	201177968	201177968	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127687	exon8	c.C807T	p.G269G	.	.	.
CYB5R1	51706	broad.mit.edu	36	1	201198856	201198856	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016243	exon8	c.C706T	p.R236C	.	.	.
PPFIA4	8497	broad.mit.edu	36	1	201304329	201304329	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015053	exon14	c.G1756A	p.D586N	.	.	.
MYOG	4656	broad.mit.edu	36	1	201321622	201321622	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002479	exon1	c.G91A	p.E31K	.	.	.
ADORA1	134	broad.mit.edu	36	1	201364665	201364665	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001048230	exon2	c.C73T	p.P25S	.	.	.
CHI3L1	1116	broad.mit.edu	36	1	201418490	201418490	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001276	exon6	c.G579T	p.K193N	.	.	.
CHIT1	1118	broad.mit.edu	36	1	201458906	201458906	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003465	exon6	c.C585T	p.Y195Y	.	.	.
FMOD	2331	broad.mit.edu	36	1	201583254	201583254	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002023	exon2	c.C768A	p.V256V	.	.	.
PRELP	5549	broad.mit.edu	36	1	201719335	201719335	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002725	exon2	c.G400T	p.D134Y	.	.	.
OPTC	26254	broad.mit.edu	36	1	201734482	201734482	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014359	exon4	c.G421A	p.D141N	.	.	.
ATP2B4	493	broad.mit.edu	36	1	201937821	201937821	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001396	exon7	c.C928T	p.R310C	.	.	.
ATP2B4	493	broad.mit.edu	36	1	201939461	201939461	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001396	exon8	c.C996T	p.I332I	.	.	.
ATP2B4	493	broad.mit.edu	36	1	201942831	201942831	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001396	exon9	c.C1171T	p.R391C	.	.	.
ATP2B4	493	broad.mit.edu	36	1	201969124	201969124	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001396	exon21	c.C3460T	p.P1154S	.	.	.
LAX1	54900	broad.mit.edu	36	1	202010146	202010146	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017773	exon5	c.G911A	p.G304E	.	.	.
ZC3H11A	9877	broad.mit.edu	36	1	202073811	202073811	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014827	exon13	c.G969T	p.K323N	.	.	.
SOX13	9580	broad.mit.edu	36	1	202361828	202361828	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005686	exon14	c.C1812T	p.D604D	.	.	.
ETNK2	55224	broad.mit.edu	36	1	202375793	202375793	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018208	exon5	c.G861A	p.E287E	.	.	.
REN	5972	broad.mit.edu	36	1	202390828	202390828	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000537	exon10	c.G1160A	p.R387Q	.	.	.
REN	5972	broad.mit.edu	36	1	202391944	202391944	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000537	exon8	c.G945T	p.K315N	.	.	.
REN	5972	broad.mit.edu	36	1	202397914	202397914	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000537	exon2	c.G99A	p.R33R	.	.	.
PPP1R15B	84919	broad.mit.edu	36	1	202646508	202646508	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032833	exon1	c.G655A	p.V219I	.	.	.
PIK3C2B	5287	broad.mit.edu	36	1	202660636	202660636	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002646	exon34	c.C4872T	p.F1624F	.	.	.
PIK3C2B	5287	broad.mit.edu	36	1	202668036	202668036	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002646	exon28	c.G4070A	p.R1357Q	.	.	.
PIK3C2B	5287	broad.mit.edu	36	1	202700350	202700350	+	Missense_Mutation	SNP	C	T	T	rs2271416	by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002646	exon5	c.G1040A	p.R347Q	.	.	.
MDM4	4194	broad.mit.edu	36	1	202785060	202785060	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002393	exon11	c.C1100T	p.S367L	MDM4,upper_aerodigestive_tract,head_neck,Substitution - Missense,0	.	.
NFASC	23114	broad.mit.edu	36	1	203180142	203180142	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160331	exon1	c.G76A	p.E26K	.	.	.
NFASC	23114	broad.mit.edu	36	1	203190033	203190033	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160331	exon3	c.C292T	p.R98C	.	.	.
CNTN2	6900	broad.mit.edu	36	1	203294899	203294899	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005076	exon6	c.C552T	p.F184F	.	.	.
CNTN2	6900	broad.mit.edu	36	1	203297726	203297726	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005076	exon9	c.C1084T	p.R362W	.	.	.
DSTYK	25778	broad.mit.edu	36	1	203395875	203395875	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015375	exon8	c.C2095A	p.H699N	.	.	.
ELK4	2005	broad.mit.edu	36	1	203855657	203855657	+	Intron	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021795	exon3	c.A1140C	p.Q380H	.	.	.
NUCKS1	64710	broad.mit.edu	36	1	203965351	203965351	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022731	exon2	c.C39A	p.Y13X	.	.	.
IKBKE	9641	broad.mit.edu	36	1	204714913	204714913	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193322	exon5	c.C311T	p.A104V	.	.	.
IKBKE	9641	broad.mit.edu	36	1	204718198	204718198	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193322	exon9	c.C885T	p.F295F	.	.	.
LGTN	1939	broad.mit.edu	36	1	204843132	204843132	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006893	exon6	c.G580A	p.D194N	.	.	.
IL10	3586	broad.mit.edu	36	1	205010911	205010911	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000572	exon3	c.G342T	p.E114D	.	.	.
FAIM3	9214	broad.mit.edu	36	1	205151883	205151883	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005449	exon4	c.T525G	p.V175V	.	.	.
FAIM3	9214	broad.mit.edu	36	1	205153848	205153848	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005449	exon2	c.G252T	p.K84N	.	.	.
PIGR	5284	broad.mit.edu	36	1	205177375	205177375	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002644	exon4	c.G733A	p.V245I	.	.	.
FCAMR	83953	broad.mit.edu	36	1	205202510	205202510	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032029	exon5	c.C323A	p.S108X	.	.	.
C1orf116	79098	broad.mit.edu	36	1	205263238	205263238	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023938	exon4	c.C494T	p.A165V	.	.	.
PFKFB2	5208	broad.mit.edu	36	1	205294715	205294715	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001018053	exon2	c.C30T	p.N10N	.	.	.
C4BPA	722	broad.mit.edu	36	1	205363933	205363933	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000715	exon5	c.G472T	p.D158Y	.	.	.
CR2	1380	broad.mit.edu	36	1	205706701	205706701	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001006658	exon2	c.C266A	p.S89Y	.	.	.
CR1	1378	broad.mit.edu	36	1	205807856	205807856	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000651	exon25	c.C4017A	p.V1339V	.	.	.
CR1	1378	broad.mit.edu	36	1	205807920	205807920	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000651	exon25	c.G4081A	p.D1361N	.	.	.
CR1	1378	broad.mit.edu	36	1	205820290	205820290	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000651	exon30	c.C5019A	p.F1673L	.	.	.
CR1	1378	broad.mit.edu	36	1	205858067	205858067	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000651	exon42	c.C6918T	p.N2306N	.	.	.
CD46	4179	broad.mit.edu	36	1	206007039	206007039	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153826	exon6	c.A732C	p.K244N	.	.	.
CD46	4179	broad.mit.edu	36	1	206025618	206025618	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153826	exon11	c.G1050A	p.P350P	.	.	.
PLXNA2	5362	broad.mit.edu	36	1	206300769	206300769	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025179	exon13	c.C2623T	p.R875X	.	.	.
MUL1	79594	broad.mit.edu	36	1	20700358	20700358	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024544	exon4	c.G471T	p.E157D	.	.	.
LOC642587	642587	broad.mit.edu	36	1	207669336	207669336	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001104548	exon2	c.C71A	p.S24Y	.	.	.
CAMK1G	57172	broad.mit.edu	36	1	207845522	207845522	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020439	exon5	c.C315A	p.L105L	.	.	.
CAMK1G	57172	broad.mit.edu	36	1	207849017	207849017	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020439	exon8	c.C705A	p.Y235X	.	.	.
G0S2	50486	broad.mit.edu	36	1	207915760	207915760	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015714	exon2	c.C108T	p.F36F	.	.	.
TRAF3IP3	80342	broad.mit.edu	36	1	208012931	208012931	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025228	exon9	c.G718T	p.D240Y	.	.	.
C1orf74	148304	broad.mit.edu	36	1	208022944	208022944	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152485	exon2	c.C659A	p.S220Y	.	.	.
C1orf107	27042	broad.mit.edu	36	1	208068110	208068110	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014388	exon1	c.T79G	p.F27V	.	.	.
C1orf107	27042	broad.mit.edu	36	1	208073227	208073227	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014388	exon4	c.G463A	p.E155K	.	.	.
SYT14	255928	broad.mit.edu	36	1	208261180	208261180	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153262	exon4	c.G400A	p.A134T	.	.	.
SYT14	255928	broad.mit.edu	36	1	208340006	208340006	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153262	exon6	c.G741A	p.S247S	.	.	.
KIF17	57576	broad.mit.edu	36	1	20881888	20881888	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001122819	exon11	c.C2308T	p.R770C	.	.	.
HHAT	55733	broad.mit.edu	36	1	208863523	208863523	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018194	exon11	c.C1276T	p.R426X	.	.	.
KCNH1	3756	broad.mit.edu	36	1	208923509	208923509	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002238	exon11	c.C2626T	p.R876W	.	.	.
KCNH1	3756	broad.mit.edu	36	1	208923828	208923828	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002238	exon11	c.G2307A	p.T769T	.	.	.
KCNH1	3756	broad.mit.edu	36	1	208923983	208923983	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002238	exon11	c.C2152T	p.R718X	.	.	.
KCNH1	3756	broad.mit.edu	36	1	209159950	209159950	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002238	exon7	c.G1036T	p.E346X	.	.	.
KCNH1	3756	broad.mit.edu	36	1	209347292	209347292	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002238	exon2	c.T130C	p.Y44H	.	.	.
TRAF5	7188	broad.mit.edu	36	1	209609511	209609511	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004619	exon9	c.T884C	p.F295S	.	.	.
TRAF5	7188	broad.mit.edu	36	1	209612410	209612410	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004619	exon11	c.C1417A	p.L473M	.	.	.
HP1BP3	50809	broad.mit.edu	36	1	20979516	20979516	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016287	exon2	c.C5T	p.A2V	.	.	.
NEK2	4751	broad.mit.edu	36	1	209913476	209913476	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002497	exon3	c.T527G	p.F176C	.	.	.
LPGAT1	9926	broad.mit.edu	36	1	210018969	210018969	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014873	exon6	c.G768A	p.T256T	.	.	.
INTS7	25896	broad.mit.edu	36	1	210215158	210215158	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199809	exon12	c.C1641A	p.F547L	.	.	.
PPP2R5A	5525	broad.mit.edu	36	1	210597154	210597154	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199756	exon11	c.C960T	p.N320N	.	.	.
TMEM206	55248	broad.mit.edu	36	1	210615235	210615235	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198862	exon8	c.C997A	p.P333T	.	.	.
EIF4G3	8672	broad.mit.edu	36	1	21064235	21064235	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003760	exon16	c.C2562A	p.V854V	.	.	.
NENF	29937	broad.mit.edu	36	1	210685889	210685889	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013349	exon4	c.G437T	p.R146I	.	.	.
EIF4G3	8672	broad.mit.edu	36	1	21085406	21085406	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003760	exon14	c.G2131T	p.E711X	.	.	.
FAM71A	149647	broad.mit.edu	36	1	210865231	210865231	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153606	exon1	c.C389A	p.S130Y	.	.	.
FAM71A	149647	broad.mit.edu	36	1	210865578	210865578	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153606	exon1	c.A736C	p.N246H	.	.	.
FLVCR1	28982	broad.mit.edu	36	1	211099144	211099144	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014053	exon1	c.C727A	p.L243M	.	.	.
EIF4G3	8672	broad.mit.edu	36	1	21141245	21141245	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003760	exon9	c.T821C	p.V274A	.	.	.
RPS6KC1	26750	broad.mit.edu	36	1	211481064	211481064	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012424	exon11	c.G1622A	p.G541D	.	.	.
RPS6KC1	26750	broad.mit.edu	36	1	211481242	211481242	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012424	exon11	c.C1800A	p.F600L	.	.	.
RPS6KC1	26750	broad.mit.edu	36	1	211482099	211482099	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012424	exon11	c.T2657G	p.F886C	.	.	.
PTPN14	5784	broad.mit.edu	36	1	212691866	212691866	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005401	exon3	c.G249T	p.K83N	.	.	.
CENPF	1063	broad.mit.edu	36	1	212881025	212881025	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016343	exon12	c.G2721T	p.E907D	.	.	.
CENPF	1063	broad.mit.edu	36	1	212882210	212882210	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016343	exon12	c.G3906T	p.E1302D	.	.	.
CENPF	1063	broad.mit.edu	36	1	212882942	212882942	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016343	exon12	c.G4638A	p.A1546A	.	.	.
CENPF	1063	broad.mit.edu	36	1	212896955	212896955	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016343	exon18	c.G8542T	p.E2848X	.	.	.
CENPF	1063	broad.mit.edu	36	1	212898984	212898984	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016343	exon19	c.G9131T	p.R3044I	.	.	.
KCNK2	3776	broad.mit.edu	36	1	213409191	213409191	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001017424	exon4	c.G490T	p.E164X	.	.	.
KCTD3	51133	broad.mit.edu	36	1	213817990	213817990	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016121	exon6	c.G340T	p.E114X	.	.	.
USH2A	7399	broad.mit.edu	36	1	213879171	213879171	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206933	exon69	c.G15001A	p.E5001K	.	.	.
USH2A	7399	broad.mit.edu	36	1	213915156	213915156	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206933	exon63	c.C12720A	p.I4240I	.	.	.
USH2A	7399	broad.mit.edu	36	1	213915482	213915482	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206933	exon63	c.C12394T	p.L4132L	.	.	.
USH2A	7399	broad.mit.edu	36	1	214019893	214019893	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206933	exon55	c.C10854T	p.G3618G	.	.	.
USH2A	7399	broad.mit.edu	36	1	214053740	214053740	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206933	exon49	c.C9700A	p.H3234N	.	.	.
USH2A	7399	broad.mit.edu	36	1	214318197	214318197	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206933	exon27	c.C5429A	p.S1810Y	.	.	.
ECE1	1889	broad.mit.edu	36	1	21435918	21435918	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001113348	exon12	c.G1348A	p.E450K	.	.	.
USH2A	7399	broad.mit.edu	36	1	214415328	214415328	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206933	exon21	c.G4516T	p.E1506X	.	.	.
USH2A	7399	broad.mit.edu	36	1	214532266	214532266	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_206933	exon10	c.T1714C	p.C572R	.	.	.
USH2A	7399	broad.mit.edu	36	1	214661931	214661931	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206933	exon2	c.C371A	p.S124Y	.	.	.
USH2A	7399	broad.mit.edu	36	1	214662196	214662196	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206933	exon2	c.C106A	p.L36I	.	.	.
ECE1	1889	broad.mit.edu	36	1	21471969	21471969	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001113348	exon4	c.C255T	p.S85S	.	.	.
ESRRG	2104	broad.mit.edu	36	1	214808015	214808015	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206595	exon5	c.G569T	p.R190M	.	.	.
SPATA17	128153	broad.mit.edu	36	1	216014384	216014384	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138796	exon7	c.G605A	p.R202Q	.	.	.
TGFB2	7042	broad.mit.edu	36	1	216645178	216645178	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003238	exon2	c.C391T	p.R131X	.	.	.
TGFB2	7042	broad.mit.edu	36	1	216674050	216674050	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003238	exon3	c.C514A	p.L172I	.	.	.
TGFB2	7042	broad.mit.edu	36	1	216681298	216681298	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003238	exon7	c.A1216G	p.M406V	.	.	.
RAP1GAP	5909	broad.mit.edu	36	1	21807308	21807308	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002885	exon17	c.C1281A	p.F427L	.	.	.
RAP1GAP	5909	broad.mit.edu	36	1	21807997	21807997	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002885	exon16	c.T1091G	p.F364C	.	.	.
EPRS	2058	broad.mit.edu	36	1	218208861	218208861	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004446	exon32	c.C4449A	p.F1483L	.	.	.
MARK1	4139	broad.mit.edu	36	1	218875439	218875439	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018650	exon12	c.G1221T	p.L407L	.	.	.
MARK1	4139	broad.mit.edu	36	1	218893313	218893313	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018650	exon16	c.C1984T	p.R662C	.	.	.
HLX	3142	broad.mit.edu	36	1	219121302	219121302	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021958	exon2	c.A736C	p.N246H	.	.	.
HLX	3142	broad.mit.edu	36	1	219122148	219122148	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021958	exon3	c.G792A	p.T264T	.	.	.
LDLRAD2	401944	broad.mit.edu	36	1	22011589	22011589	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001013693	exon1	c.G58A	p.A20T	.	.	.
MIA3	375056	broad.mit.edu	36	1	220868253	220868253	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198551	exon4	c.G1068T	p.Q356H	.	.	.
MIA3	375056	broad.mit.edu	36	1	220890659	220890659	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198551	exon10	c.G3781T	p.E1261X	.	.	.
MIA3	375056	broad.mit.edu	36	1	220894718	220894718	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198551	exon18	c.C4567A	p.L1523M	.	.	.
DISP1	84976	broad.mit.edu	36	1	221243649	221243649	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032890	exon8	c.C2287T	p.R763C	.	.	.
DISP1	84976	broad.mit.edu	36	1	221245749	221245749	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032890	exon8	c.C4387A	p.L1463I	.	.	.
TLR5	7100	broad.mit.edu	36	1	221351685	221351685	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003268	exon6	c.C1312A	p.L438I	.	.	.
SUSD4	55061	broad.mit.edu	36	1	221508617	221508617	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001037175	exon4	c.G385A	p.D129N	.	.	.
C1orf65	164127	broad.mit.edu	36	1	221635280	221635280	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152610	exon1	c.C1840T	p.L614F	.	.	.
CAPN2	824	broad.mit.edu	36	1	222001373	222001373	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001748	exon5	c.C612T	p.F204F	.	.	.
TP53BP2	7159	broad.mit.edu	36	1	222035197	222035197	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031685	exon18	c.G3386T	p.R1129I	.	.	.
CELA3A	10136	broad.mit.edu	36	1	22206010	22206010	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005747	exon5	c.G415A	p.V139I	.	.	.
NVL	4931	broad.mit.edu	36	1	222562381	222562381	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002533	exon6	c.G550T	p.D184Y	.	.	.
CDC42	998	broad.mit.edu	36	1	22290578	22290578	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001791	exon6	c.G557A	p.R186H	.	.	.
CNIH3	149111	broad.mit.edu	36	1	222935310	222935310	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152495	exon2	c.G109T	p.D37Y	.	.	.
CNIH3	149111	broad.mit.edu	36	1	222939142	222939142	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152495	exon3	c.G172A	p.E58K	.	.	.
DNAH14	127602	broad.mit.edu	36	1	223207093	223207093	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144989	exon2	c.G66T	p.K22N	.	.	.
LBR	3930	broad.mit.edu	36	1	223657693	223657693	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194442	exon14	c.T1783C	p.Y595H	.	.	.
ENAH	55740	broad.mit.edu	36	1	223752705	223752705	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018212	exon13	c.G1642T	p.E548X	.	.	.
TMEM63A	9725	broad.mit.edu	36	1	224107017	224107017	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014698	exon20	c.G1874A	p.S625N	.	.	.
C1orf55	163859	broad.mit.edu	36	1	224239826	224239826	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152608	exon7	c.G1156T	p.D386Y	.	.	.
C1orf55	163859	broad.mit.edu	36	1	224242257	224242257	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152608	exon6	c.C1097T	p.A366V	.	.	.
ACBD3	64746	broad.mit.edu	36	1	224415871	224415871	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022735	exon4	c.C712T	p.R238W	.	.	.
LIN9	286826	broad.mit.edu	36	1	224520575	224520575	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173083	exon9	c.C946T	p.R316W	.	.	.
ADCK3	56997	broad.mit.edu	36	1	225219616	225219616	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020247	exon3	c.G470A	p.G157D	.	.	.
CDC42BPA	8476	broad.mit.edu	36	1	225346280	225346280	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014826	exon15	c.A2042G	p.K681R	.	.	.
CDC42BPA	8476	broad.mit.edu	36	1	225374159	225374159	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014826	exon12	c.C1616T	p.T539M	.	.	.
ZNF678	339500	broad.mit.edu	36	1	225908875	225908875	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178549	exon4	c.G466T	p.E156X	.	.	.
ZNF678	339500	broad.mit.edu	36	1	225909512	225909512	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178549	exon4	c.G1103T	p.R368I	.	.	.
ZNF678	339500	broad.mit.edu	36	1	225909680	225909680	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178549	exon4	c.G1271T	p.R424I	.	.	.
ZNF678	339500	broad.mit.edu	36	1	225909864	225909864	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178549	exon4	c.G1455T	p.E485D	.	.	.
ZNF678	339500	broad.mit.edu	36	1	225910100	225910100	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178549	exon4	c.G1691T	p.R564I	.	.	.
SNAP47	116841	broad.mit.edu	36	1	226013779	226013779	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_053052	exon3	c.G1093A	p.A365T	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226499759	226499759	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052843	exon12	c.G3504T	p.K1168N	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226499867	226499867	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052843	exon12	c.G3612T	p.K1204N	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226543002	226543002	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052843	exon38	c.G10129A	p.A3377T	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226572226	226572226	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052843	exon53	c.G13860A	p.P4620P	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226575937	226575937	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052843	exon55	c.G14772T	p.K4924N	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226605178	226605178	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052843	exon77	c.C18330T	p.F6110F	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226623177	226623177	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098623	exon89	c.G19899T	p.E6633D	.	.	.
ZBTB40	9923	broad.mit.edu	36	1	22689362	22689362	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014870	exon2	c.C334A	p.L112I	.	.	.
ACTA1	58	broad.mit.edu	36	1	227634257	227634257	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001100	exon6	c.G824A	p.G275D	.	.	.
NUP133	55746	broad.mit.edu	36	1	227700634	227700634	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018230	exon6	c.C691T	p.R231W	.	.	.
EPHA8	2046	broad.mit.edu	36	1	22775454	22775454	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020526	exon3	c.G317A	p.R106H	.	.	.
URB2	9816	broad.mit.edu	36	1	227837555	227837555	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014777	exon4	c.G572T	p.R191I	.	.	.
URB2	9816	broad.mit.edu	36	1	227838115	227838115	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014777	exon4	c.G1132A	p.D378N	.	.	.
URB2	9816	broad.mit.edu	36	1	227838357	227838357	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014777	exon4	c.G1374T	p.Q458H	.	.	.
URB2	9816	broad.mit.edu	36	1	227845960	227845960	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014777	exon5	c.T3692C	p.F1231S	.	.	.
EPHA8	2046	broad.mit.edu	36	1	22788454	22788454	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001006943	exon5	c.C1483A	p.L495I	.	.	.
GALNT2	2590	broad.mit.edu	36	1	228438789	228438789	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004481	exon5	c.C541T	p.P181S	.	.	.
AGT	183	broad.mit.edu	36	1	228913030	228913030	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000029	exon2	c.G190T	p.D64Y	.	.	.
TTC13	79573	broad.mit.edu	36	1	229127277	229127277	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024525	exon14	c.C1654T	p.R552X	.	.	.
TTC13	79573	broad.mit.edu	36	1	229163624	229163624	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024525	exon2	c.C320A	p.S107X	.	.	.
TRIM67	440730	broad.mit.edu	36	1	229409041	229409041	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004342	exon7	c.G1701T	p.E567D	.	.	.
TRIM67	440730	broad.mit.edu	36	1	229411444	229411444	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004342	exon8	c.G1948A	p.V650M	.	.	.
C1orf131	128061	broad.mit.edu	36	1	229441413	229441413	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152379	exon2	c.C263T	p.S88L	.	.	.
EGLN1	54583	broad.mit.edu	36	1	229573048	229573048	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022051	exon3	c.G1031A	p.R344Q	.	.	.
DISC1	27185	broad.mit.edu	36	1	229897043	229897043	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164539	exon2	c.G916A	p.D306N	.	.	.
DISC1	27185	broad.mit.edu	36	1	229952321	229952321	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164539	exon4	c.G1144T	p.D382Y	.	.	.
SIPA1L2	57568	broad.mit.edu	36	1	230617888	230617888	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020808	exon17	c.C4737T	p.L1579L	.	.	.
SIPA1L2	57568	broad.mit.edu	36	1	230630788	230630788	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020808	exon15	c.C4402T	p.R1468X	.	.	.
SIPA1L2	57568	broad.mit.edu	36	1	230716471	230716471	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020808	exon1	c.G1238T	p.R413I	.	.	.
KIAA1383	54627	broad.mit.edu	36	1	231009248	231009248	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019090	exon1	c.A1856C	p.K619T	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231219316	231219316	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014801	exon27	c.C4813A	p.Q1605K	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231227725	231227725	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014801	exon26	c.C4395T	p.G1465G	.	.	.
KIAA1804	84451	broad.mit.edu	36	1	231557255	231557255	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032435	exon4	c.G1186A	p.E396K	.	.	.
KIAA1804	84451	broad.mit.edu	36	1	231581539	231581539	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032435	exon9	c.G2164T	p.A722S	.	.	.
SLC35F3	148641	broad.mit.edu	36	1	232433991	232433991	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173508	exon3	c.C489T	p.F163F	.	.	.
KDM1A	23028	broad.mit.edu	36	1	23254210	23254210	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001009999	exon6	c.C852T	p.F284F	.	.	.
RBM34	23029	broad.mit.edu	36	1	233390987	233390987	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001161533	exon2	c.C72T	p.G24G	.	.	.
ARID4B	51742	broad.mit.edu	36	1	233454674	233454674	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031371	exon12	c.C937A	p.L313I	.	.	.
GGPS1	9453	broad.mit.edu	36	1	233572443	233572443	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001037277	exon4	c.G636T	p.K212N	.	.	.
GNG4	2786	broad.mit.edu	36	1	233782064	233782064	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004485	exon3	c.C196T	p.R66C	.	.	.
LYST	1130	broad.mit.edu	36	1	233892896	233892896	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000081	exon53	c.C11373A	p.F3791L	.	.	.
LYST	1130	broad.mit.edu	36	1	234039017	234039017	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000081	exon5	c.C1724T	p.S575L	.	.	.
LYST	1130	broad.mit.edu	36	1	234039233	234039233	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000081	exon5	c.G1508A	p.R503Q	.	.	.
LYST	1130	broad.mit.edu	36	1	234039527	234039527	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000081	exon5	c.T1214C	p.L405S	.	.	.
LYST	1130	broad.mit.edu	36	1	234039756	234039756	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000081	exon5	c.C985T	p.R329X	.	.	.
LYST	1130	broad.mit.edu	36	1	234040343	234040343	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000081	exon5	c.T398C	p.V133A	.	.	.
NID1	4811	broad.mit.edu	36	1	234207883	234207883	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002508	exon20	c.C3651T	p.G1217G	.	.	.
NID1	4811	broad.mit.edu	36	1	234210516	234210516	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002508	exon17	c.C3288T	p.D1096D	.	.	.
NID1	4811	broad.mit.edu	36	1	234223754	234223754	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002508	exon13	c.C2569A	p.L857I	.	.	.
NID1	4811	broad.mit.edu	36	1	234255975	234255975	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002508	exon8	c.C1828T	p.R610C	.	.	.
GPR137B	7107	broad.mit.edu	36	1	234435099	234435099	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003272	exon6	c.C1017T	p.F339F	.	.	.
ERO1LB	56605	broad.mit.edu	36	1	234450791	234450791	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019891	exon15	c.G1307A	p.R436Q	.	.	.
ERO1LB	56605	broad.mit.edu	36	1	234451891	234451891	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019891	exon14	c.G1165A	p.D389N	.	.	.
ERO1LB	56605	broad.mit.edu	36	1	234466212	234466212	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019891	exon7	c.G615T	p.E205D	.	.	.
LGALS8	3964	broad.mit.edu	36	1	234777935	234777935	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201544	exon10	c.A805G	p.M269V	.	.	.
HEATR1	55127	broad.mit.edu	36	1	234815130	234815130	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018072	exon17	c.T2059G	p.L687V	.	.	.
HEATR1	55127	broad.mit.edu	36	1	234817336	234817336	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018072	exon14	c.G1704T	p.K568N	.	.	.
HEATR1	55127	broad.mit.edu	36	1	234833102	234833102	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018072	exon3	c.C340A	p.L114M	.	.	.
RYR2	6262	broad.mit.edu	36	1	235599508	235599508	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001035	exon6	c.C361T	p.L121L	.	.	.
RYR2	6262	broad.mit.edu	36	1	235741655	235741655	+	Missense_Mutation	SNP	C	A	A	rs4336838	by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001035	exon24	c.C2763A	p.F921L	.	.	.
RYR2	6262	broad.mit.edu	36	1	235823505	235823505	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001035	exon33	c.G4382T	p.R1461I	.	.	.
RYR2	6262	broad.mit.edu	36	1	235847315	235847315	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001035	exon38	c.G5822A	p.R1941H	.	.	.
RYR2	6262	broad.mit.edu	36	1	235962012	235962012	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001035	exon78	c.G10979T	p.R3660I	.	.	.
RYR2	6262	broad.mit.edu	36	1	236014340	236014340	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001035	exon90	c.C12705A	p.F4235L	.	.	.
ZP4	57829	broad.mit.edu	36	1	236116725	236116725	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021186	exon6	c.C808T	p.R270C	.	.	.
ZP4	57829	broad.mit.edu	36	1	236118301	236118301	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021186	exon4	c.C533A	p.S178Y	.	.	.
ASAP3	55616	broad.mit.edu	36	1	23638306	23638306	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001143778	exon10	c.C922T	p.R308X	.	.	.
RPL11	6135	broad.mit.edu	36	1	23894974	23894974	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000975	exon5	c.T496C	p.F166L	.	.	.
RGS7	6000	broad.mit.edu	36	1	239032833	239032833	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002924	exon16	c.G1353T	p.K451N	.	.	.
RGS7	6000	broad.mit.edu	36	1	239044667	239044667	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002924	exon12	c.C817T	p.R273W	.	.	.
FH	2271	broad.mit.edu	36	1	239736023	239736023	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000143	exon6	c.C807A	p.I269I	.	.	.
FH	2271	broad.mit.edu	36	1	239741977	239741977	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000143	exon4	c.C468T	p.V156V	.	.	.
KMO	8564	broad.mit.edu	36	1	239816631	239816631	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003679	exon11	c.G985A	p.E329K	.	.	.
KMO	8564	broad.mit.edu	36	1	239818722	239818722	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003679	exon12	c.G1065A	p.A355A	.	.	.
WDR64	128025	broad.mit.edu	36	1	239968360	239968360	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144625	exon10	c.G1237A	p.D413N	.	.	.
WDR64	128025	broad.mit.edu	36	1	240013263	240013263	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144625	exon22	c.G2632T	p.E878X	.	.	.
PLD5	200150	broad.mit.edu	36	1	240330619	240330619	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195811	exon9	c.T1142C	p.M381T	.	.	.
FUCA1	2517	broad.mit.edu	36	1	24053454	24053454	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000147	exon5	c.G952T	p.E318X	.	.	.
FUCA1	2517	broad.mit.edu	36	1	24053615	24053615	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000147	exon5	c.G791A	p.R264Q	.	.	.
CEP170	9859	broad.mit.edu	36	1	241395730	241395730	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042405	exon12	c.C1861A	p.L621I	.	.	.
CEP170	9859	broad.mit.edu	36	1	241421353	241421353	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042405	exon8	c.C698A	p.P233H	.	.	.
CEP170	9859	broad.mit.edu	36	1	241430554	241430554	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042405	exon6	c.G385T	p.E129X	.	.	.
SDCCAG8	10806	broad.mit.edu	36	1	241538092	241538092	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006642	exon8	c.A919C	p.R307R	.	.	.
AKT3	10000	broad.mit.edu	36	1	241875822	241875822	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181690	exon4	c.G425T	p.R142I	.	.	.
ADSS	159	broad.mit.edu	36	1	242641241	242641241	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001126	exon12	c.G1289A	p.R430Q	.	.	.
C1orf101	257044	broad.mit.edu	36	1	242790866	242790866	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173807	exon10	c.G1303T	p.D435Y	.	.	.
PPPDE1	51029	broad.mit.edu	36	1	242921902	242921902	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016076	exon4	c.T308G	p.L103X	.	.	.
PPPDE1	51029	broad.mit.edu	36	1	242935484	242935484	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016076	exon5	c.C355A	p.L119I	.	.	.
IL22RA1	58985	broad.mit.edu	36	1	24337670	24337670	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021258	exon2	c.C165T	p.I55I	.	.	.
SMYD3	64754	broad.mit.edu	36	1	244157876	244157876	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022743	exon7	c.G505A	p.D169N	.	.	.
SMYD3	64754	broad.mit.edu	36	1	244560444	244560444	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022743	exon4	c.G178T	p.E60X	.	.	.
TFB2M	64216	broad.mit.edu	36	1	244795803	244795803	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022366	exon1	c.C261A	p.I87I	.	.	.
CNST	163882	broad.mit.edu	36	1	244851404	244851404	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152609	exon3	c.G430A	p.A144T	.	.	.
ZNF670	93474	broad.mit.edu	36	1	245267734	245267734	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033213	exon4	c.A810G	p.I270M	.	.	.
C1orf201	90529	broad.mit.edu	36	1	24560070	24560070	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199013	exon8	c.G786A	p.P262P	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245653214	245653214	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004895	exon2	c.G343T	p.E115X	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245665944	245665944	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004895	exon6	c.G2548T	p.V850L	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245666013	245666013	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004895	exon6	c.G2617A	p.A873T	.	.	.
OR2B11	127623	broad.mit.edu	36	1	245681333	245681333	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004492	exon1	c.C575T	p.S192L	.	.	.
OR2G3	81469	broad.mit.edu	36	1	245835664	245835664	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001914	exon1	c.G154T	p.D52Y	.	.	.
OR2G3	81469	broad.mit.edu	36	1	245836081	245836081	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001914	exon1	c.G571A	p.D191N	.	.	.
OR13G1	441933	broad.mit.edu	36	1	245902291	245902291	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005487	exon1	c.C676A	p.R226S	.	.	.
OR6F1	343169	broad.mit.edu	36	1	245942177	245942177	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005286	exon1	c.C504T	p.F168F	.	.	.
OR1C1	26188	broad.mit.edu	36	1	245987801	245987801	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012353	exon1	c.C531A	p.F177L	.	.	.
TRIM58	25893	broad.mit.edu	36	1	246094686	246094686	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015431	exon3	c.C573A	p.G191G	.	.	.
OR2T8	343172	broad.mit.edu	36	1	246151579	246151579	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005522	exon1	c.C637A	p.L213M	.	.	.
OR2L8	391190	broad.mit.edu	36	1	246179023	246179023	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001963	exon1	c.G241A	p.A81T	.	.	.
OR2L2	26246	broad.mit.edu	36	1	246268340	246268340	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004686	exon1	c.T148G	p.L50V	.	.	.
OR2L13	284521	broad.mit.edu	36	1	246329447	246329447	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175911	exon3	c.C147T	p.H49H	.	.	.
OR2L13	284521	broad.mit.edu	36	1	246330090	246330090	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175911	exon3	c.C790A	p.L264I	.	.	.
OR2M5	127059	broad.mit.edu	36	1	246375482	246375482	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004690	exon1	c.G410T	p.R137I	.	.	.
OR2M5	127059	broad.mit.edu	36	1	246375573	246375573	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004690	exon1	c.C501A	p.S167S	.	.	.
OR2M3	127062	broad.mit.edu	36	1	246433332	246433332	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004689	exon1	c.C340A	p.L114I	.	.	.
OR2M3	127062	broad.mit.edu	36	1	246433788	246433788	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004689	exon1	c.C796T	p.R266C	.	.	.
OR2M7	391196	broad.mit.edu	36	1	246553703	246553703	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004691	exon1	c.C791A	p.S264Y	.	.	.
OR2T6	254879	broad.mit.edu	36	1	246618182	246618182	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005471	exon1	c.C650T	p.S217F	.	.	.
NIPAL3	57185	broad.mit.edu	36	1	24663118	24663118	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020448	exon11	c.C942A	p.F314L	.	.	.
OR2T1	26696	broad.mit.edu	36	1	246636053	246636053	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030904	exon1	c.C135T	p.I45I	.	.	.
OR2G6	391211	broad.mit.edu	36	1	246752434	246752434	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013355	exon1	c.T864C	p.I288I	.	.	.
OR2T34	127068	broad.mit.edu	36	1	246804045	246804045	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001821	exon1	c.C637T	p.L213F	.	.	.
OR2T34	127068	broad.mit.edu	36	1	246804373	246804373	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001821	exon1	c.G309A	p.G103G	.	.	.
OR2T10	127069	broad.mit.edu	36	1	246822882	246822882	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004693	exon1	c.G811T	p.D271Y	.	.	.
ZNF692	55657	broad.mit.edu	36	1	247117125	247117125	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017865	exon6	c.G644A	p.S215N	.	.	.
SRRM1	10250	broad.mit.edu	36	1	24845748	24845748	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005839	exon3	c.G115T	p.D39Y	.	.	.
SRRM1	10250	broad.mit.edu	36	1	24870514	24870514	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005839	exon16	c.G2451T	p.K817N	.	.	.
CLIC4	25932	broad.mit.edu	36	1	25013272	25013272	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013943	exon3	c.C283A	p.L95I	.	.	.
RHD	6007	broad.mit.edu	36	1	25500674	25500674	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127691	exon5	c.C711A	p.A237A	.	.	.
TMEM50A	23585	broad.mit.edu	36	1	25539585	25539585	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014313	exon2	c.C21A	p.G7G	.	.	.
TMEM57	55219	broad.mit.edu	36	1	25653364	25653364	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018202	exon4	c.C377A	p.S126Y	.	.	.
LDLRAP1	26119	broad.mit.edu	36	1	25761775	25761775	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015627	exon5	c.T513G	p.F171L	.	.	.
MAN1C1	57134	broad.mit.edu	36	1	25885569	25885569	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020379	exon2	c.G592A	p.E198K	.	.	.
STMN1	3925	broad.mit.edu	36	1	26100132	26100132	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203399	exon5	c.G412T	p.E138X	.	.	.
PAFAH2	5051	broad.mit.edu	36	1	26188647	26188647	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000437	exon3	c.A123G	p.Q41Q	.	.	.
TRIM63	84676	broad.mit.edu	36	1	26265437	26265437	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032588	exon2	c.G241A	p.E81K	.	.	.
PDIK1L	149420	broad.mit.edu	36	1	26313635	26313635	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152835	exon2	c.G249T	p.K83N	.	.	.
CNKSR1	10256	broad.mit.edu	36	1	26379813	26379813	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006314	exon3	c.G231T	p.E77D	.	.	.
CATSPER4	378807	broad.mit.edu	36	1	26390388	26390388	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198137	exon2	c.C237A	p.F79L	.	.	.
CATSPER4	378807	broad.mit.edu	36	1	26396812	26396812	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198137	exon4	c.C508T	p.R170W	.	.	.
CCDC21	64793	broad.mit.edu	36	1	26476351	26476351	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022778	exon14	c.G2269T	p.E757X	.	.	.
UBXN11	91544	broad.mit.edu	36	1	26481623	26481623	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077262	exon11	c.G957T	p.E319D	.	.	.
PIGV	55650	broad.mit.edu	36	1	26993759	26993759	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017837	exon3	c.C647A	p.S216Y	.	.	.
GPATCH3	63906	broad.mit.edu	36	1	27099180	27099180	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022078	exon1	c.C341T	p.A114V	.	.	.
FAM46B	115572	broad.mit.edu	36	1	27205753	27205753	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052943	exon2	c.G547A	p.D183N	.	.	.
SLC9A1	6548	broad.mit.edu	36	1	27301618	27301618	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003047	exon8	c.G1665T	p.K555N	.	.	.
WDTC1	23038	broad.mit.edu	36	1	27482518	27482518	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015023	exon5	c.C282A	p.F94L	.	.	.
WDTC1	23038	broad.mit.edu	36	1	27502863	27502863	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015023	exon14	c.T1630G	p.F544V	.	.	.
PHACTR4	65979	broad.mit.edu	36	1	28659327	28659327	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023923	exon3	c.T238C	p.S80P	.	.	.
PHACTR4	65979	broad.mit.edu	36	1	28664823	28664823	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023923	exon4	c.G342T	p.K114N	.	.	.
RCC1	1104	broad.mit.edu	36	1	28735475	28735475	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001269	exon8	c.C932T	p.S311L	.	.	.
TRNAU1AP	54952	broad.mit.edu	36	1	28766511	28766511	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017846	exon6	c.G529A	p.A177T	.	.	.
YTHDF2	51441	broad.mit.edu	36	1	28943072	28943072	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172828	exon3	c.A1553G	p.E518G	.	.	.
PTPRU	10076	broad.mit.edu	36	1	29459806	29459806	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005704	exon7	c.G948A	p.P316P	.	.	.
PTPRU	10076	broad.mit.edu	36	1	29524369	29524369	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005704	exon30	c.G4222A	p.V1408I	.	.	.
SDC3	9672	broad.mit.edu	36	1	31119942	31119942	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014654	exon4	c.C951T	p.F317F	.	.	.
SPOCD1	90853	broad.mit.edu	36	1	32032050	32032050	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144569	exon12	c.G2419A	p.E807K	.	.	.
SPOCD1	90853	broad.mit.edu	36	1	32053001	32053001	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144569	exon2	c.C521A	p.S174Y	.	.	.
PTP4A2	8073	broad.mit.edu	36	1	32147069	32147069	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195101	exon4	c.G382T	p.D128Y	.	.	.
KPNA6	23633	broad.mit.edu	36	1	32395092	32395092	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012316	exon3	c.G190A	p.D64N	.	.	.
TXLNA	200081	broad.mit.edu	36	1	32419465	32419465	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175852	exon3	c.C205T	p.R69C	.	.	.
LCK	3932	broad.mit.edu	36	1	32514117	32514117	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042771	exon7	c.C497T	p.S166L	.	.	.
TSSK3	81629	broad.mit.edu	36	1	32600990	32600990	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052841	exon1	c.G101T	p.R34I	.	.	.
ZBTB8A	653121	broad.mit.edu	36	1	32831601	32831601	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040441	exon3	c.C482A	p.S161Y	.	.	.
SYNC	81493	broad.mit.edu	36	1	32933170	32933170	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001161708	exon2	c.G1116T	p.K372N	.	.	.
KIAA1522	57648	broad.mit.edu	36	1	33009161	33009161	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001198972	exon6	c.G1617T	p.L539L	.	.	.
YARS	8565	broad.mit.edu	36	1	33020689	33020689	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003680	exon9	c.C945T	p.V315V	.	.	.
FNDC5	252995	broad.mit.edu	36	1	33106391	33106391	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153756	exon3	c.C171A	p.A57A	.	.	.
PRDM16	63976	broad.mit.edu	36	1	3318358	3318358	+	Silent	SNP	C	T	T	rs35579804	by-frequency	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022114	exon9	c.C1737T	p.F579F	.	.	.
AK2	204	broad.mit.edu	36	1	33251566	33251566	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001625	exon6	c.C523T	p.R175X	.	.	.
ZNF362	149076	broad.mit.edu	36	1	33537218	33537218	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152493	exon9	c.G1247A	p.R416Q	.	.	.
PHC2	1912	broad.mit.edu	36	1	33613696	33613696	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198040	exon1	c.C32A	p.S11Y	.	.	.
ZSCAN20	7579	broad.mit.edu	36	1	33732755	33732755	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145238	exon8	c.G2224T	p.E742X	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33936988	33936988	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052896	exon24	c.C3757A	p.L1253M	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33981749	33981749	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052896	exon14	c.C1772A	p.S591Y	.	.	.
CSMD2	114784	broad.mit.edu	36	1	34030618	34030618	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052896	exon11	c.C1423A	p.L475I	.	.	.
HMGB4	127540	broad.mit.edu	36	1	34102879	34102879	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145205	exon2	c.G500T	p.R167M	.	.	.
C1orf94	84970	broad.mit.edu	36	1	34439096	34439096	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032884	exon3	c.G576A	p.P192P	.	.	.
DLGAP3	58512	broad.mit.edu	36	1	35137900	35137900	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080418	exon3	c.G1343A	p.R448Q	.	.	.
ZMYM1	79830	broad.mit.edu	36	1	35351307	35351307	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024772	exon10	c.C1289A	p.S430Y	.	.	.
SFPQ	6421	broad.mit.edu	36	1	35426180	35426180	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005066	exon7	c.G1796A	p.R599Q	.	.	.
SFPQ	6421	broad.mit.edu	36	1	35427446	35427446	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005066	exon5	c.G1540A	p.D514N	.	.	.
SFPQ	6421	broad.mit.edu	36	1	35429539	35429539	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005066	exon2	c.T1007G	p.F336C	.	.	.
ZMYM4	9202	broad.mit.edu	36	1	35563559	35563559	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005095	exon2	c.A51C	p.K17N	.	.	.
ZMYM4	9202	broad.mit.edu	36	1	35623636	35623636	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005095	exon10	c.G1576A	p.A526T	.	.	.
ZMYM4	9202	broad.mit.edu	36	1	35656658	35656658	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005095	exon29	c.G4337A	p.R1446Q	.	.	.
CLSPN	63967	broad.mit.edu	36	1	35977338	35977338	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190481	exon19	c.G3224A	p.R1075Q	.	.	.
CLSPN	63967	broad.mit.edu	36	1	35987702	35987702	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190481	exon11	c.A2033G	p.E678G	.	.	.
CLSPN	63967	broad.mit.edu	36	1	35999068	35999068	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001190481	exon8	c.C1041A	p.I347I	.	.	.
EIF2C4	192670	broad.mit.edu	36	1	36055135	36055135	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017629	exon2	c.C85T	p.R29X	.	.	.
EIF2C4	192670	broad.mit.edu	36	1	36088439	36088439	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017629	exon16	c.G2270T	p.G757V	.	.	.
EIF2C1	26523	broad.mit.edu	36	1	36131325	36131325	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012199	exon4	c.G371T	p.R124L	.	.	.
EIF2C1	26523	broad.mit.edu	36	1	36157789	36157789	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012199	exon19	c.C2568T	p.F856F	.	.	.
EIF2C3	192669	broad.mit.edu	36	1	36211696	36211696	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024852	exon5	c.G655A	p.D219N	.	.	.
ADPRHL2	54936	broad.mit.edu	36	1	36330634	36330634	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017825	exon5	c.C726A	p.Y242X	.	.	.
THRAP3	9967	broad.mit.edu	36	1	36520834	36520834	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005119	exon3	c.C83T	p.S28L	.	.	.
STK40	83931	broad.mit.edu	36	1	36581568	36581568	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032017	exon11	c.C1073T	p.A358V	.	.	.
CCDC27	148870	broad.mit.edu	36	1	3670181	3670181	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152492	exon8	c.G1373A	p.R458Q	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37043339	37043339	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000831	exon15	c.C2401T	p.R801W	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37063886	37063886	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000831	exon11	c.C1659T	p.S553S	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37080004	37080004	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000831	exon10	c.C1450T	p.R484W	.	.	.
KIAA0562	9731	broad.mit.edu	36	1	3743074	3743074	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014704	exon10	c.C1162T	p.R388C	.	.	.
KIAA0562	9731	broad.mit.edu	36	1	3755042	3755042	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014704	exon3	c.C277T	p.R93X	.	.	.
RSPO1	284654	broad.mit.edu	36	1	37854777	37854777	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001038633	exon5	c.C252T	p.F84F	.	.	.
MTF1	4520	broad.mit.edu	36	1	38053772	38053772	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005955	exon11	c.G1885T	p.E629X	.	.	.
RRAGC	64121	broad.mit.edu	36	1	39090729	39090729	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022157	exon4	c.C660A	p.I220I	.	.	.
RRAGC	64121	broad.mit.edu	36	1	39095206	39095206	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022157	exon2	c.G373T	p.D125Y	.	.	.
MYCBP	26292	broad.mit.edu	36	1	39105195	39105195	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012333	exon4	c.G211A	p.E71K	.	.	.
GJA9	81025	broad.mit.edu	36	1	39113463	39113463	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030772	exon2	c.A895C	p.S299R	.	.	.
NDUFS5	4725	broad.mit.edu	36	1	39267167	39267167	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004552	exon2	c.G184T	p.D62Y	.	.	.
NDUFS5	4725	broad.mit.edu	36	1	39272657	39272657	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004552	exon3	c.C223T	p.R75C	.	.	.
MACF1	23499	broad.mit.edu	36	1	39521719	39521719	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012090	exon10	c.C875T	p.S292L	.	.	.
MACF1	23499	broad.mit.edu	36	1	39531875	39531875	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012090	exon19	c.C2166A	p.F722L	.	.	.
MACF1	23499	broad.mit.edu	36	1	39560910	39560910	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012090	exon33	c.C4088T	p.S1363L	.	.	.
MACF1	23499	broad.mit.edu	36	1	39571831	39571831	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033044	exon1	c.G2304A	p.K768K	.	.	.
MACF1	23499	broad.mit.edu	36	1	39623784	39623784	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012090	exon53	c.C7754A	p.S2585Y	.	.	.
MACF1	23499	broad.mit.edu	36	1	39626042	39626042	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012090	exon54	c.C8755T	p.R2919W	.	.	.
KIAA0754	643314	broad.mit.edu	36	1	39649845	39649845	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015038	exon1	c.G1321A	p.G441R	.	.	.
KIAA0754	643314	broad.mit.edu	36	1	39650158	39650158	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015038	exon1	c.C1634A	p.S545Y	.	.	.
KIAA0754	643314	broad.mit.edu	36	1	39652670	39652670	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015038	exon1	c.G4146T	p.E1382D	.	.	.
MACF1	23499	broad.mit.edu	36	1	39665824	39665824	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012090	exon58	c.C10241A	p.P3414H	.	.	.
HEYL	26508	broad.mit.edu	36	1	39870966	39870966	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014571	exon2	c.C89T	p.A30V	.	.	.
TRIT1	54802	broad.mit.edu	36	1	40091101	40091101	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017646	exon4	c.G449A	p.R150Q	.	.	.
CAP1	10487	broad.mit.edu	36	1	40304560	40304560	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006367	exon7	c.G611A	p.G204E	.	.	.
RLF	6018	broad.mit.edu	36	1	40475123	40475123	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012421	exon8	c.G2162A	p.R721Q	.	.	.
RLF	6018	broad.mit.edu	36	1	40475394	40475394	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012421	exon8	c.C2433A	p.F811L	.	.	.
RLF	6018	broad.mit.edu	36	1	40478169	40478169	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012421	exon8	c.A5208C	p.E1736D	.	.	.
RLF	6018	broad.mit.edu	36	1	40478470	40478470	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012421	exon8	c.C5509A	p.H1837N	.	.	.
SMAP2	64744	broad.mit.edu	36	1	40651278	40651278	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198979	exon5	c.G391T	p.E131X	.	.	.
ZNF643	65243	broad.mit.edu	36	1	40701643	40701643	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023070	exon5	c.G1400T	p.R467I	.	.	.
ZNF642	339559	broad.mit.edu	36	1	40720097	40720097	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198494	exon3	c.C203T	p.P68L	.	.	.
KCNQ4	9132	broad.mit.edu	36	1	41076611	41076611	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004700	exon14	c.C1917A	p.F639L	.	.	.
SCMH1	22955	broad.mit.edu	36	1	41313521	41313521	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172218	exon10	c.C722A	p.P241H	.	.	.
SCMH1	22955	broad.mit.edu	36	1	41351615	41351615	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172218	exon9	c.C459T	p.F153F	.	.	.
HIVEP3	59269	broad.mit.edu	36	1	41763092	41763092	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024503	exon6	c.C5284T	p.R1762C	.	.	.
HIVEP3	59269	broad.mit.edu	36	1	41813810	41813810	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024503	exon5	c.C5199T	p.F1733F	.	.	.
FOXJ3	22887	broad.mit.edu	36	1	42466221	42466221	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198851	exon7	c.T448C	p.S150P	.	.	.
ZMYND12	84217	broad.mit.edu	36	1	42674724	42674724	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032257	exon5	c.C672T	p.F224F	.	.	.
PPCS	79717	broad.mit.edu	36	1	42697978	42697978	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077447	exon3	c.C211T	p.R71W	.	.	.
CCDC30	728621	broad.mit.edu	36	1	42804665	42804665	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080850	exon6	c.C787T	p.R263X	.	.	.
CCDC30	728621	broad.mit.edu	36	1	42849308	42849308	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080850	exon10	c.G1456T	p.E486X	.	.	.
CCDC30	728621	broad.mit.edu	36	1	42884396	42884396	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080850	exon14	c.C1894A	p.L632I	.	.	.
CCDC30	728621	broad.mit.edu	36	1	42884461	42884461	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080850	exon14	c.G1959T	p.K653N	.	.	.
CCDC30	728621	broad.mit.edu	36	1	42892207	42892207	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080850	exon16	c.C2273A	p.S758Y	.	.	.
LEPRE1	64175	broad.mit.edu	36	1	42986029	42986029	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022356	exon13	c.C1866T	p.F622F	.	.	.
ERMAP	114625	broad.mit.edu	36	1	43075424	43075424	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001017922	exon7	c.C592A	p.L198I	.	.	.
FAM183A	440585	broad.mit.edu	36	1	43389046	43389046	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001101376	exon2	c.C161A	p.S54Y	.	.	.
EBNA1BP2	10969	broad.mit.edu	36	1	43405431	43405431	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006824	exon6	c.G600T	p.K200N	.	.	.
MPL	4352	broad.mit.edu	36	1	43590782	43590782	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005373	exon12	c.G1660A	p.A554T	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43666605	43666605	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015284	exon13	c.C1330A	p.L444I	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43667982	43667982	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015284	exon14	c.C1491T	p.S497S	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43669286	43669286	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015284	exon18	c.C2157A	p.V719V	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43676989	43676989	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015284	exon32	c.C3844A	p.L1282I	.	.	.
PTPRF	5792	broad.mit.edu	36	1	43792196	43792196	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130440	exon5	c.G376A	p.E126K	.	.	.
KDM4A	9682	broad.mit.edu	36	1	43942354	43942354	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014663	exon21	c.G3038T	p.R1013I	.	.	.
ST3GAL3	6487	broad.mit.edu	36	1	44137806	44137806	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_174964	exon9	c.T609C	p.N203N	.	.	.
ATP6V0B	533	broad.mit.edu	36	1	44215470	44215470	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004047	exon7	c.C586A	p.L196I	.	.	.
ERI3	79033	broad.mit.edu	36	1	44577405	44577405	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024066	exon3	c.G388A	p.A130T	.	.	.
KIF2C	11004	broad.mit.edu	36	1	44995865	44995865	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006845	exon11	c.C1028A	p.T343N	.	.	.
HECTD3	79654	broad.mit.edu	36	1	45241982	45241982	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024602	exon20	c.C2447T	p.A816V	.	.	.
HECTD3	79654	broad.mit.edu	36	1	45248939	45248939	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024602	exon2	c.C396T	p.D132D	.	.	.
UROD	7389	broad.mit.edu	36	1	45252270	45252270	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000374	exon6	c.C577T	p.R193C	.	.	.
MUTYH	4595	broad.mit.edu	36	1	45570539	45570539	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001048173	exon10	c.C735A	p.A245A	.	.	.
MUTYH	4595	broad.mit.edu	36	1	45572738	45572738	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001048173	exon2	c.A27G	p.G9G	.	.	.
PRDX1	5052	broad.mit.edu	36	1	45753980	45753980	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181696	exon3	c.G193T	p.E65X	.	.	.
IPP	3652	broad.mit.edu	36	1	45965940	45965940	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005897	exon5	c.G998A	p.R333Q	.	.	.
IPP	3652	broad.mit.edu	36	1	45979253	45979253	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005897	exon3	c.G631T	p.D211Y	.	.	.
IPP	3652	broad.mit.edu	36	1	45984430	45984430	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005897	exon2	c.C241A	p.L81I	.	.	.
PIK3R3	8503	broad.mit.edu	36	1	46282077	46282077	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003629	exon10	c.G1241A	p.G414D	.	.	.
PIK3R3	8503	broad.mit.edu	36	1	46284217	46284217	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003629	exon9	c.C1147T	p.R383C	.	.	.
PIK3R3	8503	broad.mit.edu	36	1	46294078	46294078	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003629	exon7	c.G917A	p.R306Q	.	.	.
TSPAN1	10103	broad.mit.edu	36	1	46422575	46422575	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005727	exon4	c.C183T	p.I61I	.	.	.
C1orf190	541468	broad.mit.edu	36	1	46458021	46458021	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013615	exon2	c.G262A	p.E88K	.	.	.
ATPAF1	64756	broad.mit.edu	36	1	46892124	46892124	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022745	exon5	c.T492G	p.I164M	.	.	.
CYP4B1	1580	broad.mit.edu	36	1	47056419	47056419	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001099772	exon11	c.G1302T	p.E434D	.	.	.
CYP4A11	1579	broad.mit.edu	36	1	47179608	47179608	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000778	exon1	c.C85A	p.L29M	.	.	.
CYP4X1	260293	broad.mit.edu	36	1	47287683	47287683	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178033	exon11	c.C1275A	p.V425V	.	.	.
AJAP1	55966	broad.mit.edu	36	1	4729855	4729855	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042478	exon3	c.A912C	p.K304N	.	.	.
AJAP1	55966	broad.mit.edu	36	1	4734386	4734386	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042478	exon5	c.C1203T	p.F401F	.	.	.
CYP4Z1	199974	broad.mit.edu	36	1	47353837	47353837	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178134	exon10	c.C1251A	p.F417L	.	.	.
STIL	6491	broad.mit.edu	36	1	47508021	47508021	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001048166	exon14	c.G2488A	p.D830N	.	.	.
STIL	6491	broad.mit.edu	36	1	47518861	47518861	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001048166	exon12	c.C1856A	p.S619Y	.	.	.
STIL	6491	broad.mit.edu	36	1	47534042	47534042	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001048166	exon7	c.C767A	p.S256Y	.	.	.
SLC5A9	200010	broad.mit.edu	36	1	48476017	48476017	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135181	exon12	c.G1447A	p.D483N	.	.	.
SPATA6	54558	broad.mit.edu	36	1	48544053	48544053	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019073	exon12	c.G1279A	p.E427K	.	.	.
SPATA6	54558	broad.mit.edu	36	1	48637852	48637852	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019073	exon7	c.C538A	p.Q180K	.	.	.
BEND5	79656	broad.mit.edu	36	1	48997312	48997312	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024603	exon3	c.C592T	p.R198C	.	.	.
EPS15	2060	broad.mit.edu	36	1	51637293	51637293	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001159969	exon8	c.C1109T	p.S370L	.	.	.
EPS15	2060	broad.mit.edu	36	1	51644221	51644221	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001159969	exon4	c.G679T	p.E227X	.	.	.
RAB3B	5865	broad.mit.edu	36	1	52215225	52215225	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002867	exon2	c.C153T	p.F51F	.	.	.
TXNDC12	51060	broad.mit.edu	36	1	52262815	52262815	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015913	exon5	c.G310T	p.D104Y	.	.	.
ZFYVE9	9372	broad.mit.edu	36	1	52576060	52576060	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007324	exon15	c.G3522T	p.E1174D	.	.	.
ZFYVE9	9372	broad.mit.edu	36	1	52583111	52583111	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007324	exon17	c.A3846C	p.K1282N	.	.	.
ORC1	4998	broad.mit.edu	36	1	52626784	52626784	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190818	exon8	c.G1301A	p.R434K	.	.	.
ORC1	4998	broad.mit.edu	36	1	52631800	52631800	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190818	exon6	c.G985T	p.D329Y	.	.	.
PRPF38A	84950	broad.mit.edu	36	1	52646914	52646914	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032864	exon3	c.G376A	p.D126N	.	.	.
ZCCHC11	23318	broad.mit.edu	36	1	52716022	52716022	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001009881	exon12	c.G1969T	p.D657Y	.	.	.
CPT2	1376	broad.mit.edu	36	1	53449102	53449102	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000098	exon4	c.G1168T	p.D390Y	.	.	.
LRP8	7804	broad.mit.edu	36	1	53489069	53489069	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017522	exon15	c.C1945T	p.R649W	.	.	.
GLIS1	148979	broad.mit.edu	36	1	53832500	53832500	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_147193	exon3	c.G664A	p.D222N	.	.	.
TMEM48	55706	broad.mit.edu	36	1	54031535	54031535	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018087	exon14	c.G1590T	p.K530N	.	.	.
YIPF1	54432	broad.mit.edu	36	1	54098341	54098341	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018982	exon10	c.C905T	p.A302V	.	.	.
YIPF1	54432	broad.mit.edu	36	1	54121508	54121508	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018982	exon4	c.G61A	p.A21T	.	.	.
DIO1	1733	broad.mit.edu	36	1	54132684	54132684	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039716	exon1	c.C213A	p.F71L	.	.	.
CDCP2	200008	broad.mit.edu	36	1	54379541	54379541	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201546	exon3	c.G581T	p.G194V	.	.	.
CYB5RL	606495	broad.mit.edu	36	1	54417506	54417506	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031672	exon7	c.C648T	p.V216V	.	.	.
C1orf175	374977	broad.mit.edu	36	1	54891894	54891894	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039464	exon3	c.C707A	p.S236Y	.	.	.
C1orf175	374977	broad.mit.edu	36	1	54944733	54944733	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039464	exon22	c.G3602C	p.S1201T	.	.	.
C1orf177	163747	broad.mit.edu	36	1	55050336	55050336	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001110533	exon6	c.C648A	p.F216L	.	.	.
C1orf177	163747	broad.mit.edu	36	1	55052172	55052172	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001110533	exon7	c.G860A	p.R287Q	.	.	.
USP24	23358	broad.mit.edu	36	1	55359014	55359014	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015306	exon38	c.C4351T	p.R1451C	.	.	.
PRKAA2	5563	broad.mit.edu	36	1	56930717	56930717	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006252	exon4	c.G429A	p.E143E	.	.	.
PRKAA2	5563	broad.mit.edu	36	1	56942663	56942663	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006252	exon7	c.G1220A	p.R407Q	.	.	.
PRKAA2	5563	broad.mit.edu	36	1	56944374	56944374	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006252	exon8	c.C1315T	p.R439C	.	.	.
C1orf168	199920	broad.mit.edu	36	1	57031019	57031019	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004303	exon2	c.C55A	p.L19I	.	.	.
C8A	731	broad.mit.edu	36	1	57119850	57119850	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000562	exon5	c.G609T	p.E203D	.	.	.
C8B	732	broad.mit.edu	36	1	57171643	57171643	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000066	exon10	c.C1505T	p.S502F	.	.	.
DAB1	1600	broad.mit.edu	36	1	57253169	57253169	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021080	exon14	c.T1419G	p.T473T	.	.	.
NPHP4	261734	broad.mit.edu	36	1	5857679	5857679	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015102	exon21	c.G2886A	p.T962T	.	.	.
OMA1	115209	broad.mit.edu	36	1	58772582	58772582	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145243	exon4	c.G739T	p.E247X	.	.	.
NPHP4	261734	broad.mit.edu	36	1	5887415	5887415	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015102	exon16	c.G1992T	p.K664N	.	.	.
NPHP4	261734	broad.mit.edu	36	1	5888070	5888070	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015102	exon15	c.G1824T	p.E608D	.	.	.
MYSM1	114803	broad.mit.edu	36	1	58915198	58915198	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001085487	exon9	c.A1378C	p.N460H	.	.	.
MYSM1	114803	broad.mit.edu	36	1	58938300	58938300	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001085487	exon1	c.G13T	p.E5X	.	.	.
C1orf87	127795	broad.mit.edu	36	1	60228985	60228985	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152377	exon12	c.C1589T	p.S530L	.	.	.
C1orf87	127795	broad.mit.edu	36	1	60239399	60239399	+	Missense_Mutation	SNP	C	A	A	rs61742748	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152377	exon10	c.G1210T	p.A404S	.	.	.
CHD5	26038	broad.mit.edu	36	1	6114290	6114290	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015557	exon21	c.G3250A	p.D1084N	.	.	.
NFIA	4774	broad.mit.edu	36	1	61326728	61326728	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145512	exon3	c.G482T	p.R161I	.	.	.
CHD5	26038	broad.mit.edu	36	1	6135095	6135095	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015557	exon6	c.C834T	p.F278F	.	.	.
RNF207	388591	broad.mit.edu	36	1	6192876	6192876	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207396	exon9	c.C807T	p.Y269Y	.	.	.
TM2D1	83941	broad.mit.edu	36	1	61947595	61947595	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032027	exon3	c.G341T	p.R114L	.	.	.
INADL	10207	broad.mit.edu	36	1	62152910	62152910	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176877	exon26	c.G3556T	p.E1186X	.	.	.
INADL	10207	broad.mit.edu	36	1	62354876	62354876	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_176877	exon36	c.C4740A	p.I1580I	.	.	.
L1TD1	54596	broad.mit.edu	36	1	62444993	62444993	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019079	exon3	c.G105T	p.K35N	.	.	.
L1TD1	54596	broad.mit.edu	36	1	62449048	62449048	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019079	exon4	c.G2014T	p.E672X	.	.	.
USP1	7398	broad.mit.edu	36	1	62683588	62683588	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001017416	exon6	c.G1149A	p.G383G	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62695913	62695913	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033407	exon48	c.G6171T	p.K2057N	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62714021	62714021	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033407	exon45	c.C5813T	p.T1938M	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62732650	62732650	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033407	exon39	c.C5008T	p.R1670X	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62751846	62751846	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033407	exon32	c.G4046A	p.R1349Q	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62791011	62791011	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033407	exon22	c.C2746T	p.R916X	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62797463	62797463	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033407	exon20	c.A2216C	p.K739T	.	.	.
ANGPTL3	27329	broad.mit.edu	36	1	62840602	62840602	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014495	exon5	c.G894A	p.T298T	.	.	.
ANGPTL3	27329	broad.mit.edu	36	1	62842291	62842291	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014495	exon6	c.G995A	p.R332Q	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62871813	62871813	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033407	exon10	c.G1060T	p.D354Y	.	.	.
ATG4C	84938	broad.mit.edu	36	1	63057295	63057295	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178221	exon5	c.A426C	p.E142D	.	.	.
ITGB3BP	23421	broad.mit.edu	36	1	63692192	63692192	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014288	exon7	c.G469T	p.G157X	.	.	.
ITGB3BP	23421	broad.mit.edu	36	1	63693199	63693199	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014288	exon5	c.A283G	p.K95E	.	.	.
ROR1	4919	broad.mit.edu	36	1	64288136	64288136	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005012	exon3	c.C349T	p.R117W	.	.	.
ROR1	4919	broad.mit.edu	36	1	64417043	64417043	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005012	exon9	c.A2731C	p.K911Q	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64909869	64909869	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020925	exon17	c.A2269G	p.M757V	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64929597	64929597	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020925	exon27	c.A3437G	p.Y1146C	.	.	.
JAK1	3716	broad.mit.edu	36	1	65093847	65093847	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002227	exon11	c.G1581T	p.K527N	.	.	.
TAS1R1	80835	broad.mit.edu	36	1	6559246	6559246	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_177540	exon3	c.A683C	p.K228T	.	.	.
LEPR	3953	broad.mit.edu	36	1	65808993	65808993	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001003679	exon4	c.G290T	p.R97I	.	.	.
LEPR	3953	broad.mit.edu	36	1	65874841	65874841	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002303	exon20	c.C3053A	p.S1018Y	.	.	.
LEPR	3953	broad.mit.edu	36	1	65875019	65875019	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002303	exon20	c.C3231A	p.I1077I	.	.	.
PDE4B	5142	broad.mit.edu	36	1	66231262	66231262	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001037340	exon1	c.G85A	p.E29K	.	.	.
DNAJC11	55735	broad.mit.edu	36	1	6635495	6635495	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018198	exon6	c.C611T	p.S204L	.	.	.
PDE4B	5142	broad.mit.edu	36	1	66610693	66610693	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002600	exon17	c.A1955G	p.Y652C	.	.	.
SGIP1	84251	broad.mit.edu	36	1	66972077	66972077	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032291	exon21	c.A1957G	p.M653V	.	.	.
WDR78	79819	broad.mit.edu	36	1	67078878	67078878	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207014	exon9	c.A1356G	p.E452E	.	.	.
WDR78	79819	broad.mit.edu	36	1	67131506	67131506	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207014	exon3	c.T524G	p.F175C	.	.	.
MIER1	57708	broad.mit.edu	36	1	67223091	67223091	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146110	exon15	c.G1510T	p.E504X	.	.	.
SLC35D1	23169	broad.mit.edu	36	1	67292245	67292245	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015139	exon1	c.G40T	p.G14X	.	.	.
C1orf141	400757	broad.mit.edu	36	1	67353700	67353700	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001013674	exon4	c.A269C	p.K90T	.	.	.
C1orf141	400757	broad.mit.edu	36	1	67364064	67364064	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001013674	exon3	c.G192T	p.K64N	.	.	.
SERBP1	26135	broad.mit.edu	36	1	67658454	67658454	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001018067	exon6	c.G822T	p.E274D	.	.	.
SERBP1	26135	broad.mit.edu	36	1	67664450	67664450	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001018067	exon2	c.G420A	p.K140K	.	.	.
RPE65	6121	broad.mit.edu	36	1	68676566	68676566	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000329	exon10	c.C1020A	p.Y340X	.	.	.
RPE65	6121	broad.mit.edu	36	1	68682927	68682927	+	Nonsense_Mutation	SNP	G	A	A	rs61752877	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000329	exon5	c.C370T	p.R124X	.	.	.
DEPDC1	55635	broad.mit.edu	36	1	68717509	68717509	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001114120	exon10	c.C2018A	p.S673Y	.	.	.
LRRC7	57554	broad.mit.edu	36	1	69998527	69998527	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020794	exon1	c.C52T	p.R18X	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70276922	70276922	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020794	exon19	c.C2713A	p.L905I	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70278059	70278059	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020794	exon19	c.G3850T	p.D1284Y	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70314397	70314397	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020794	exon22	c.G4166A	p.R1389H	.	.	.
LRRC40	55631	broad.mit.edu	36	1	70390780	70390780	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017768	exon12	c.G1363A	p.D455N	.	.	.
LRRC40	55631	broad.mit.edu	36	1	70411750	70411750	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017768	exon9	c.G1097A	p.R366Q	.	.	.
LRRC40	55631	broad.mit.edu	36	1	70414244	70414244	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017768	exon7	c.G814A	p.V272I	.	.	.
HHLA3	11147	broad.mit.edu	36	1	70593368	70593368	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001036645	exon1	c.T146G	p.L49R	.	.	.
CTH	1491	broad.mit.edu	36	1	70673429	70673429	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153742	exon9	c.G901A	p.E301K	.	.	.
PTGER3	5733	broad.mit.edu	36	1	71250656	71250656	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198715	exon2	c.C997A	p.R333S	.	.	.
LRRIQ3	127255	broad.mit.edu	36	1	74279510	74279510	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001105659	exon7	c.T1693G	p.L565V	.	.	.
LRRIQ3	127255	broad.mit.edu	36	1	74420953	74420953	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001105659	exon3	c.C430A	p.L144I	.	.	.
FPGT	8790	broad.mit.edu	36	1	74444033	74444033	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199328	exon5	c.G952T	p.D318Y	.	.	.
TNNI3K	51086	broad.mit.edu	36	1	74569767	74569767	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199327	exon8	c.G793T	p.D265Y	.	.	.
TNNI3K	51086	broad.mit.edu	36	1	74581159	74581159	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199327	exon10	c.C1031A	p.S344Y	.	.	.
TNNI3K	51086	broad.mit.edu	36	1	74606217	74606217	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199327	exon15	c.G1605T	p.K535N	.	.	.
TNNI3K	51086	broad.mit.edu	36	1	74608651	74608651	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199327	exon19	c.C2062T	p.R688C	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74809449	74809449	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002912	exon14	c.G4533A	p.Q1511Q	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74827969	74827969	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002912	exon12	c.C2110T	p.L704F	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74885028	74885028	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002912	exon3	c.T154C	p.Y52H	.	.	.
CRYZ	1429	broad.mit.edu	36	1	74957639	74957639	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001889	exon4	c.T270G	p.G90G	.	.	.
SLC44A5	204962	broad.mit.edu	36	1	75456214	75456214	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152697	exon18	c.G1549T	p.A517S	.	.	.
SLC44A5	204962	broad.mit.edu	36	1	75457608	75457608	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152697	exon16	c.G1188A	p.A396A	.	.	.
ACADM	34	broad.mit.edu	36	1	75971188	75971188	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000016	exon4	c.G279T	p.E93D	.	.	.
ACADM	34	broad.mit.edu	36	1	75999494	75999494	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000016	exon11	c.C1045T	p.R349X	.	.	.
RABGGTB	5876	broad.mit.edu	36	1	76030475	76030475	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004582	exon7	c.C601A	p.L201M	.	.	.
ST6GALNAC3	256435	broad.mit.edu	36	1	76650444	76650444	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152996	exon3	c.G377A	p.R126Q	.	.	.
CAMTA1	23261	broad.mit.edu	36	1	7727625	7727625	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015215	exon17	c.T4326G	p.S1442R	.	.	.
ST6GALNAC5	81849	broad.mit.edu	36	1	77301476	77301476	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030965	exon5	c.C1008A	p.F336L	.	.	.
PIGK	10026	broad.mit.edu	36	1	77399928	77399928	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005482	exon7	c.G641A	p.R214Q	.	.	.
AK5	26289	broad.mit.edu	36	1	77532095	77532095	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012093	exon3	c.C199T	p.R67W	.	.	.
VAMP3	9341	broad.mit.edu	36	1	7756124	7756124	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004781	exon2	c.G38A	p.R13Q	.	.	.
ZZZ3	26009	broad.mit.edu	36	1	77870505	77870505	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015534	exon5	c.C1123T	p.R375C	.	.	.
USP33	23032	broad.mit.edu	36	1	77954102	77954102	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015017	exon19	c.A2051C	p.N684T	.	.	.
USP33	23032	broad.mit.edu	36	1	77979994	77979994	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015017	exon3	c.A70G	p.K24E	.	.	.
FAM73A	374986	broad.mit.edu	36	1	78097312	78097312	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198549	exon9	c.T1098G	p.I366M	.	.	.
NEXN	91624	broad.mit.edu	36	1	78171632	78171632	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144573	exon10	c.T1131A	p.N377K	.	.	.
FUBP1	8880	broad.mit.edu	36	1	78205916	78205916	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003902	exon4	c.G273A	p.P91P	.	.	.
GIPC2	54810	broad.mit.edu	36	1	78319049	78319049	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017655	exon2	c.G343A	p.E115K	.	.	.
GIPC2	54810	broad.mit.edu	36	1	78357703	78357703	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017655	exon4	c.G646T	p.E216X	.	.	.
IFI44L	10964	broad.mit.edu	36	1	78875394	78875394	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006820	exon6	c.C966A	p.V322V	.	.	.
IFI44	10561	broad.mit.edu	36	1	78888759	78888759	+	Silent	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006417	exon2	c.A291T	p.P97P	.	.	.
IFI44	10561	broad.mit.edu	36	1	78888922	78888922	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006417	exon2	c.G454A	p.E152K	.	.	.
TNFRSF9	3604	broad.mit.edu	36	1	7915834	7915834	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001561	exon8	c.G654T	p.K218N	.	.	.
ELTD1	64123	broad.mit.edu	36	1	79165322	79165322	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022159	exon8	c.C920A	p.P307H	.	.	.
ELTD1	64123	broad.mit.edu	36	1	79176114	79176114	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022159	exon6	c.G726T	p.K242N	.	.	.
LPHN2	23266	broad.mit.edu	36	1	82181378	82181378	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012302	exon5	c.C535T	p.R179C	.	.	.
LPHN2	23266	broad.mit.edu	36	1	82218185	82218185	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012302	exon16	c.G3015A	p.K1005K	.	.	.
LPHN2	23266	broad.mit.edu	36	1	82229274	82229274	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012302	exon20	c.C4069A	p.L1357I	.	.	.
SLC45A1	50651	broad.mit.edu	36	1	8313498	8313498	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080397	exon4	c.G1358T	p.R453I	.	.	.
RPF1	80135	broad.mit.edu	36	1	84717601	84717601	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025065	exon1	c.A49C	p.K17Q	.	.	.
RPF1	80135	broad.mit.edu	36	1	84733712	84733712	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025065	exon6	c.C685T	p.R229C	.	.	.
SSX2IP	117178	broad.mit.edu	36	1	84885808	84885808	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001166295	exon13	c.C1660A	p.Q554K	.	.	.
WDR63	126820	broad.mit.edu	36	1	85328432	85328432	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145172	exon8	c.C786A	p.F262L	.	.	.
SYDE2	84144	broad.mit.edu	36	1	85421008	85421008	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032184	exon3	c.A1905G	p.K635K	.	.	.
SYDE2	84144	broad.mit.edu	36	1	85428592	85428592	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032184	exon2	c.G1177A	p.D393N	.	.	.
SYDE2	84144	broad.mit.edu	36	1	85428911	85428911	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032184	exon2	c.G858T	p.K286N	.	.	.
C1orf52	148423	broad.mit.edu	36	1	85490935	85490935	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198077	exon3	c.G514T	p.V172L	.	.	.
ZNHIT6	54680	broad.mit.edu	36	1	85896232	85896232	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001170670	exon10	c.C1141A	p.L381I	.	.	.
ZNHIT6	54680	broad.mit.edu	36	1	85944577	85944577	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001170670	exon4	c.C655T	p.R219X	.	.	.
ZNHIT6	54680	broad.mit.edu	36	1	85946036	85946036	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001170670	exon2	c.G403T	p.E135X	.	.	.
ODF2L	57489	broad.mit.edu	36	1	86592869	86592869	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020729	exon16	c.G1651A	p.E551K	.	.	.
ODF2L	57489	broad.mit.edu	36	1	86597147	86597147	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020729	exon12	c.G1183T	p.E395X	.	.	.
ODF2L	57489	broad.mit.edu	36	1	86620524	86620524	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020729	exon7	c.G613T	p.E205X	.	.	.
ODF2L	57489	broad.mit.edu	36	1	86623848	86623848	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020729	exon3	c.A127G	p.I43V	.	.	.
ODF2L	57489	broad.mit.edu	36	1	86625262	86625262	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020729	exon2	c.G37T	p.E13X	.	.	.
CLCA2	9635	broad.mit.edu	36	1	86677237	86677237	+	Missense_Mutation	SNP	G	A	A	rs55906076	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006536	exon7	c.G1063A	p.D355N	.	.	.
CLCA2	9635	broad.mit.edu	36	1	86693675	86693675	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006536	exon14	c.G2709T	p.L903F	.	.	.
CLCA1	1179	broad.mit.edu	36	1	86736867	86736867	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001285	exon13	c.G2138A	p.R713K	.	.	.
CLCA4	22802	broad.mit.edu	36	1	86813655	86813655	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012128	exon11	c.C1736A	p.T579N	.	.	.
SH3GLB1	51100	broad.mit.edu	36	1	86960894	86960894	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016009	exon4	c.T427G	p.F143V	.	.	.
NOC2L	26155	broad.mit.edu	36	1	882169	882169	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015658	exon4	c.G454A	p.A152T	.	.	.
PKN2	5586	broad.mit.edu	36	1	89009721	89009721	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006256	exon5	c.C652T	p.R218W	.	.	.
PKN2	5586	broad.mit.edu	36	1	89010017	89010017	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006256	exon6	c.G852T	p.K284N	.	.	.
CCBL2	56267	broad.mit.edu	36	1	89221106	89221106	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019610	exon2	c.G992A	p.R331Q	.	.	.
GBP3	2635	broad.mit.edu	36	1	89252527	89252527	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018284	exon5	c.G452A	p.R151Q	.	.	.
GBP7	388646	broad.mit.edu	36	1	89370608	89370608	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207398	exon11	c.C1729T	p.R577X	.	.	.
GBP7	388646	broad.mit.edu	36	1	89403023	89403023	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207398	exon3	c.G297T	p.E99D	.	.	.
GBP7	388646	broad.mit.edu	36	1	89410069	89410069	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207398	exon2	c.C138T	p.L46L	.	.	.
GBP4	115361	broad.mit.edu	36	1	89429576	89429576	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052941	exon6	c.C872T	p.A291V	.	.	.
GBP5	115362	broad.mit.edu	36	1	89504821	89504821	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134486	exon6	c.C664A	p.L222M	.	.	.
LRRC8C	84230	broad.mit.edu	36	1	89952320	89952320	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032270	exon3	c.C1603A	p.L535I	.	.	.
SLC2A7	155184	broad.mit.edu	36	1	9005682	9005682	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207420	exon3	c.G193A	p.A65T	.	.	.
LRRC8D	55144	broad.mit.edu	36	1	90171870	90171870	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001134479	exon3	c.G655A	p.E219K	.	.	.
LRRC8D	55144	broad.mit.edu	36	1	90173369	90173369	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001134479	exon3	c.C2154T	p.L718L	.	.	.
SLC2A5	6518	broad.mit.edu	36	1	9020307	9020307	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003039	exon12	c.G1431T	p.K477N	.	.	.
ZNF326	284695	broad.mit.edu	36	1	90256895	90256895	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182976	exon9	c.G1138T	p.E380X	.	.	.
ZNF326	284695	broad.mit.edu	36	1	90265568	90265568	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182976	exon12	c.A1469C	p.E490A	.	.	.
ZNF326	284695	broad.mit.edu	36	1	90265657	90265657	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182976	exon12	c.G1558T	p.E520X	.	.	.
ZNF326	284695	broad.mit.edu	36	1	90265794	90265794	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182976	exon12	c.G1695T	p.E565D	.	.	.
ZNF644	84146	broad.mit.edu	36	1	91175771	91175771	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201269	exon4	c.G3547T	p.E1183X	.	.	.
ZNF644	84146	broad.mit.edu	36	1	91176876	91176876	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201269	exon3	c.G2623T	p.E875X	.	.	.
ZNF644	84146	broad.mit.edu	36	1	91177084	91177084	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201269	exon3	c.T2415C	p.R805R	.	.	.
ZNF644	84146	broad.mit.edu	36	1	91178153	91178153	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_201269	exon3	c.C1346A	p.A449D	.	.	.
HFM1	164045	broad.mit.edu	36	1	91504199	91504199	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001017975	exon36	c.G3937T	p.E1313X	.	.	.
HFM1	164045	broad.mit.edu	36	1	91557498	91557498	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001017975	exon24	c.G2620A	p.D874N	.	.	.
HFM1	164045	broad.mit.edu	36	1	91617252	91617252	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001017975	exon9	c.G1114T	p.D372Y	.	.	.
HFM1	164045	broad.mit.edu	36	1	91639203	91639203	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001017975	exon2	c.T25C	p.F9L	.	.	.
CDC7	8317	broad.mit.edu	36	1	91749939	91749939	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003503	exon6	c.C443A	p.S148Y	.	.	.
TGFBR3	7049	broad.mit.edu	36	1	91960115	91960115	+	Missense_Mutation	SNP	G	A	A	rs41305630	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195683	exon8	c.C1060T	p.R354W	.	.	.
TGFBR3	7049	broad.mit.edu	36	1	91965835	91965835	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195683	exon7	c.C854A	p.S285Y	.	.	.
TGFBR3	7049	broad.mit.edu	36	1	91968003	91968003	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195683	exon6	c.G684T	p.Q228H	.	.	.
BRDT	676	broad.mit.edu	36	1	92206366	92206366	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207189	exon4	c.G406T	p.E136X	.	.	.
GLMN	11146	broad.mit.edu	36	1	92529609	92529609	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_053274	exon4	c.A239G	p.D80G	.	.	.
EVI5	7813	broad.mit.edu	36	1	92931956	92931956	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005665	exon9	c.A1220C	p.K407T	.	.	.
RPL5	6125	broad.mit.edu	36	1	93078764	93078764	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000969	exon7	c.G774T	p.K258N	.	.	.
FAM69A	388650	broad.mit.edu	36	1	93085336	93085336	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001006605	exon4	c.C466A	p.L156I	.	.	.
MTF2	22823	broad.mit.edu	36	1	93348428	93348428	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007358	exon2	c.G59A	p.R20Q	.	.	.
MTF2	22823	broad.mit.edu	36	1	93367439	93367439	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007358	exon11	c.G1006T	p.E336X	.	.	.
MTF2	22823	broad.mit.edu	36	1	93371921	93371921	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007358	exon12	c.A1234C	p.K412Q	.	.	.
TMED5	50999	broad.mit.edu	36	1	93394462	93394462	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001167830	exon3	c.A454G	p.K152E	.	.	.
CCDC18	343099	broad.mit.edu	36	1	93455897	93455897	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_206886	exon14	c.G2199T	p.K733N	.	.	.
DNTTIP2	30836	broad.mit.edu	36	1	94115627	94115627	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014597	exon2	c.C452A	p.S151Y	.	.	.
DNTTIP2	30836	broad.mit.edu	36	1	94115795	94115795	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014597	exon2	c.C284A	p.S95Y	.	.	.
ABCA4	24	broad.mit.edu	36	1	94275327	94275327	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000350	exon25	c.C3775A	p.L1259I	.	.	.
ABCA4	24	broad.mit.edu	36	1	94315977	94315977	+	Nonsense_Mutation	SNP	C	A	A	rs1800548	by-cluster	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000350	exon11	c.G1411T	p.E471X	.	.	.
ABCA4	24	broad.mit.edu	36	1	94318627	94318627	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000350	exon8	c.G1094T	p.R365I	.	.	.
ABCA4	24	broad.mit.edu	36	1	94337132	94337132	+	Missense_Mutation	SNP	C	T	T	rs61748535	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000350	exon6	c.G574A	p.A192T	.	.	.
ARHGAP29	9411	broad.mit.edu	36	1	94418056	94418056	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004815	exon20	c.G2293T	p.D765Y	.	.	.
ARHGAP29	9411	broad.mit.edu	36	1	94423185	94423185	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004815	exon18	c.G1940A	p.R647Q	.	.	.
F3	2152	broad.mit.edu	36	1	94778486	94778486	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001993	exon2	c.A127G	p.N43D	.	.	.
SLC44A3	126969	broad.mit.edu	36	1	95080251	95080251	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114106	exon8	c.G868A	p.V290I	.	.	.
RWDD3	25950	broad.mit.edu	36	1	95482639	95482639	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199682	exon2	c.A370C	p.S124R	.	.	.
PTBP2	58155	broad.mit.edu	36	1	97007961	97007961	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021190	exon4	c.C230A	p.A77D	.	.	.
DPYD	1806	broad.mit.edu	36	1	97317272	97317272	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000110	exon23	c.G2926T	p.E976X	.	.	.
DPYD	1806	broad.mit.edu	36	1	97543488	97543488	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000110	exon18	c.C2214A	p.V738V	.	.	.
DPYD	1806	broad.mit.edu	36	1	97753949	97753949	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000110	exon13	c.C1661T	p.A554V	.	.	.
PALMD	54873	broad.mit.edu	36	1	99905837	99905837	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017734	exon3	c.G178T	p.E60X	.	.	.
PALMD	54873	broad.mit.edu	36	1	99924839	99924839	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017734	exon4	c.G271T	p.D91Y	.	.	.
FRRS1	391059	broad.mit.edu	36	1	99979069	99979069	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001013660	exon6	c.G444T	p.E148D	.	.	.
TRPC6	7225	broad.mit.edu	36	11	100828938	100828938	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004621	exon13	c.G2754T	p.E918D	.	.	.
TRPC6	7225	broad.mit.edu	36	11	100829641	100829641	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004621	exon12	c.G2594A	p.R865K	.	.	.
TRPC6	7225	broad.mit.edu	36	11	100849597	100849597	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004621	exon7	c.G1862A	p.G621E	.	.	.
MUC6	4588	broad.mit.edu	36	11	1008764	1008764	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005961	exon31	c.C4037T	p.S1346L	.	.	.
ANGPTL5	253935	broad.mit.edu	36	11	101267340	101267340	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178127	exon9	c.C1047A	p.F349L	.	.	.
KIAA1377	57562	broad.mit.edu	36	11	101339058	101339058	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020802	exon6	c.C2082A	p.I694I	.	.	.
KIAA1377	57562	broad.mit.edu	36	11	101357891	101357891	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020802	exon8	c.C3020A	p.S1007Y	.	.	.
BIRC3	330	broad.mit.edu	36	11	101700470	101700470	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182962	exon3	c.G20T	p.S7I	.	.	.
BIRC3	330	broad.mit.edu	36	11	101700965	101700965	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182962	exon3	c.G515T	p.R172I	.	.	.
BIRC3	330	broad.mit.edu	36	11	101706960	101706960	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182962	exon7	c.G1102T	p.E368X	.	.	.
BIRC2	329	broad.mit.edu	36	11	101753454	101753454	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001166	exon7	c.C1384T	p.R462W	.	.	.
TMEM123	114908	broad.mit.edu	36	11	101777585	101777585	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052932	exon4	c.C497A	p.T166N	.	.	.
MMP27	64066	broad.mit.edu	36	11	102067896	102067896	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022122	exon10	c.G1353T	p.K451N	.	.	.
MMP8	4317	broad.mit.edu	36	11	102091342	102091342	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002424	exon7	c.C939T	p.V313V	.	.	.
MMP10	4319	broad.mit.edu	36	11	102152237	102152237	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002425	exon6	c.C916A	p.L306M	.	.	.
MMP10	4319	broad.mit.edu	36	11	102152342	102152342	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002425	exon6	c.G811T	p.E271X	.	.	.
MMP1	4312	broad.mit.edu	36	11	102166425	102166425	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145938	exon10	c.A1140C	p.K380N	.	.	.
MMP3	4314	broad.mit.edu	36	11	102214641	102214641	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002422	exon8	c.C1080A	p.F360L	.	.	.
MMP13	4322	broad.mit.edu	36	11	102328078	102328078	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002427	exon5	c.C672T	p.F224F	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102489533	102489533	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001377	exon2	c.G253T	p.V85L	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102491154	102491154	+	Nonsense_Mutation	SNP	G	T	T	rs35318378	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001377	exon4	c.G541T	p.E181X	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102524503	102524503	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001377	exon20	c.G2893T	p.E965X	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102534681	102534681	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001377	exon27	c.G4193T	p.R1398I	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102546111	102546111	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001377	exon33	c.C5033A	p.A1678D	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102580873	102580873	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001377	exon52	c.G8424T	p.M2808I	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102598983	102598983	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001377	exon59	c.A9311G	p.E3104G	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102687837	102687837	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001377	exon79	c.G11514T	p.K3838N	.	.	.
DDI1	414301	broad.mit.edu	36	11	103413889	103413889	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001711	exon1	c.G1129A	p.D377N	.	.	.
CASP4	837	broad.mit.edu	36	11	104325700	104325700	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033306	exon5	c.G393A	p.A131A	.	.	.
CASP4	837	broad.mit.edu	36	11	104330684	104330684	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033306	exon2	c.G94T	p.A32S	.	.	.
CASP4	837	broad.mit.edu	36	11	104330817	104330817	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001225	exon2	c.G129T	p.K43N	.	.	.
AMPD3	272	broad.mit.edu	36	11	10483891	10483891	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001025389	exon15	c.C2188T	p.R730X	.	.	.
RNF141	50862	broad.mit.edu	36	11	10493157	10493157	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016422	exon6	c.G575A	p.R192H	.	.	.
GRIA4	2893	broad.mit.edu	36	11	104988272	104988272	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001077244	exon3	c.C148T	p.L50F	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105300338	105300338	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077243	exon12	c.G1480A	p.A494T	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105302691	105302691	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001077243	exon13	c.G1862A	p.R621Q	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105309718	105309718	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001077243	exon14	c.G2107T	p.V703L	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105355655	105355655	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000829	exon17	c.C2688A	p.V896V	.	.	.
KBTBD3	143879	broad.mit.edu	36	11	105428967	105428967	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152433	exon3	c.T1659C	p.I553I	.	.	.
KBTBD3	143879	broad.mit.edu	36	11	105429365	105429365	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152433	exon3	c.C1261A	p.L421I	.	.	.
KBTBD3	143879	broad.mit.edu	36	11	105429560	105429560	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152433	exon3	c.C1066T	p.R356X	.	.	.
AASDHPPT	60496	broad.mit.edu	36	11	105455529	105455529	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015423	exon2	c.G309A	p.P103P	.	.	.
MRVI1	10335	broad.mit.edu	36	11	10604555	10604555	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100163	exon9	c.C629T	p.T210I	.	.	.
GUCY1A2	2977	broad.mit.edu	36	11	106186391	106186391	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000855	exon5	c.G1230T	p.M410I	.	.	.
GUCY1A2	2977	broad.mit.edu	36	11	106315719	106315719	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000855	exon4	c.G883T	p.E295X	.	.	.
GUCY1A2	2977	broad.mit.edu	36	11	106316094	106316094	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000855	exon4	c.C508A	p.Q170K	.	.	.
CWF19L2	143884	broad.mit.edu	36	11	106710843	106710843	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152434	exon16	c.C2413T	p.L805F	.	.	.
CWF19L2	143884	broad.mit.edu	36	11	106768735	106768735	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152434	exon11	c.G1714A	p.G572R	.	.	.
CWF19L2	143884	broad.mit.edu	36	11	106805156	106805156	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152434	exon8	c.G1012T	p.D338Y	.	.	.
CWF19L2	143884	broad.mit.edu	36	11	106805258	106805258	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152434	exon8	c.G910T	p.E304X	.	.	.
ELMOD1	55531	broad.mit.edu	36	11	107007529	107007529	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130037	exon5	c.C206A	p.S69Y	.	.	.
NPAT	4863	broad.mit.edu	36	11	107537485	107537485	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002519	exon17	c.A3538C	p.N1180H	.	.	.
NPAT	4863	broad.mit.edu	36	11	107548514	107548514	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002519	exon13	c.G2407A	p.E803K	.	.	.
ATM	472	broad.mit.edu	36	11	107644532	107644532	+	Missense_Mutation	SNP	C	A	A	rs3218688	by-cluster,by-frequency,by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000051	exon18	c.C2824A	p.L942I	.	.	.
ATM	472	broad.mit.edu	36	11	107656978	107656978	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000051	exon24	c.G3449T	p.R1150I	.	.	.
ATM	472	broad.mit.edu	36	11	107658719	107658719	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000051	exon25	c.C3649A	p.L1217M	.	.	.
ATM	472	broad.mit.edu	36	11	107665026	107665026	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000051	exon28	c.C4222A	p.L1408I	.	.	.
ATM	472	broad.mit.edu	36	11	107665698	107665698	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000051	exon29	c.C4396T	p.R1466X	.	.	.
ATM	472	broad.mit.edu	36	11	107668583	107668583	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000051	exon30	c.A4464G	p.L1488L	.	.	.
ATM	472	broad.mit.edu	36	11	107677595	107677595	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000051	exon35	c.C5188T	p.R1730X	.	.	.
ATM	472	broad.mit.edu	36	11	107695982	107695982	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000051	exon44	c.C6439A	p.L2147I	.	.	.
ATM	472	broad.mit.edu	36	11	107701425	107701425	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000051	exon46	c.C6751A	p.L2251I	.	.	.
C11orf65	160140	broad.mit.edu	36	11	107759017	107759017	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152587	exon9	c.A883C	p.N295H	.	.	.
EXPH5	23086	broad.mit.edu	36	11	107887845	107887845	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015065	exon6	c.G3599T	p.R1200I	.	.	.
EXPH5	23086	broad.mit.edu	36	11	107890295	107890295	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015065	exon6	c.G1149T	p.E383D	.	.	.
EXPH5	23086	broad.mit.edu	36	11	107904092	107904092	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015065	exon4	c.C473A	p.P158H	.	.	.
DDX10	1662	broad.mit.edu	36	11	108049450	108049450	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004398	exon2	c.A233G	p.K78R	.	.	.
DDX10	1662	broad.mit.edu	36	11	108064950	108064950	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004398	exon7	c.G926T	p.R309I	.	.	.
DDX10	1662	broad.mit.edu	36	11	108099073	108099073	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004398	exon13	c.G1639T	p.E547X	.	.	.
ZC3H12C	85463	broad.mit.edu	36	11	109540776	109540776	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033390	exon6	c.G1756A	p.D586N	.	.	.
ZC3H12C	85463	broad.mit.edu	36	11	109541373	109541373	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033390	exon6	c.G2353A	p.D785N	.	.	.
ARHGAP20	57569	broad.mit.edu	36	11	109955954	109955954	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020809	exon16	c.G2926T	p.D976Y	.	.	.
ARHGAP20	57569	broad.mit.edu	36	11	109956475	109956475	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020809	exon16	c.C2405A	p.S802Y	.	.	.
ARHGAP20	57569	broad.mit.edu	36	11	109956755	109956755	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020809	exon16	c.G2125A	p.D709N	.	.	.
ARHGAP20	57569	broad.mit.edu	36	11	109968052	109968052	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020809	exon11	c.C1002A	p.I334I	.	.	.
BTG4	54766	broad.mit.edu	36	11	110874618	110874618	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017589	exon2	c.G94T	p.E32X	.	.	.
C11orf88	399949	broad.mit.edu	36	11	110890869	110890869	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100388	exon1	c.C150T	p.S50S	.	.	.
C11orf88	399949	broad.mit.edu	36	11	110892039	110892039	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100388	exon3	c.C333T	p.L111L	.	.	.
SIK2	23235	broad.mit.edu	36	11	110996327	110996327	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015191	exon3	c.G307T	p.E103X	.	.	.
SIK2	23235	broad.mit.edu	36	11	111076839	111076839	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015191	exon5	c.C498A	p.F166L	.	.	.
FDXACB1	91893	broad.mit.edu	36	11	111251110	111251110	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138378	exon5	c.A1621C	p.S541R	.	.	.
HSPB2	3316	broad.mit.edu	36	11	111289476	111289476	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001541	exon2	c.G196A	p.E66K	.	.	.
DIXDC1	85458	broad.mit.edu	36	11	111350171	111350171	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037954	exon4	c.C531A	p.V177V	.	.	.
DIXDC1	85458	broad.mit.edu	36	11	111358383	111358383	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033425	exon3	c.G246T	p.K82N	.	.	.
GALNTL4	374378	broad.mit.edu	36	11	11249345	11249345	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198516	exon11	c.C1746T	p.F582F	.	.	.
NCAM1	4684	broad.mit.edu	36	11	112580339	112580339	+	5'UTR	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001076682	exon3	c.C250A	p.L84I	.	.	.
NCAM1	4684	broad.mit.edu	36	11	112580436	112580436	+	5'UTR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001076682	exon3	c.C347T	p.S116L	.	.	.
NCAM1	4684	broad.mit.edu	36	11	112607620	112607620	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001076682	exon9	c.C1104T	p.V368V	.	.	.
NCAM1	4684	broad.mit.edu	36	11	112608209	112608209	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001076682	exon10	c.C1319T	p.S440L	.	.	.
Unknown	0	broad.mit.edu	36	11	112616733	112616733	+	IGR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001076682	exon15	c.C1827T	p.L609L	.	.	.
NCAM1	4684	broad.mit.edu	36	11	112646147	112646147	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000615	exon16	c.G2130A	p.E710E	.	.	.
DRD2	1813	broad.mit.edu	36	11	112786733	112786733	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000795	exon8	c.G1258A	p.A420T	.	.	.
DRD2	1813	broad.mit.edu	36	11	112788805	112788805	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000795	exon7	c.G821A	p.R274Q	.	.	.
ZW10	9183	broad.mit.edu	36	11	113113536	113113536	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004724	exon14	c.T1984G	p.S662A	.	.	.
CLDN25	644672	broad.mit.edu	36	11	113155743	113155743	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001101389	exon1	c.C16A	p.R6S	.	.	.
USP28	57646	broad.mit.edu	36	11	113175269	113175269	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020886	exon25	c.C3137A	p.P1046H	USP28,kidney,NS,Substitution - Missense,-1	.	.
HTR3B	9177	broad.mit.edu	36	11	113307695	113307695	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006028	exon4	c.G264T	p.W88C	.	.	.
GALNTL4	374378	broad.mit.edu	36	11	11355472	11355472	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198516	exon5	c.G810T	p.E270D	.	.	.
ZBTB16	7704	broad.mit.edu	36	11	113562929	113562929	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006006	exon4	c.C1412T	p.S471L	.	.	.
ZBTB16	7704	broad.mit.edu	36	11	113618166	113618166	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006006	exon5	c.G1521A	p.Q507Q	.	.	.
NNMT	4837	broad.mit.edu	36	11	113672552	113672552	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006169	exon1	c.G64T	p.E22X	.	.	.
NNMT	4837	broad.mit.edu	36	11	113688311	113688311	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006169	exon3	c.G697A	p.E233K	.	.	.
FAM55D	54827	broad.mit.edu	36	11	113947114	113947114	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017678	exon6	c.G539T	p.R180I	.	.	.
FAM55D	54827	broad.mit.edu	36	11	113947182	113947182	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017678	exon6	c.C471A	p.P157P	.	.	.
FAM55D	54827	broad.mit.edu	36	11	113947354	113947354	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017678	exon6	c.C299A	p.A100D	.	.	.
CADM1	23705	broad.mit.edu	36	11	114554644	114554644	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014333	exon9	c.C1140T	p.V380V	.	.	.
ZNF259	8882	broad.mit.edu	36	11	116161783	116161783	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003904	exon5	c.G521T	p.R174I	.	.	.
SIK3	23387	broad.mit.edu	36	11	116233906	116233906	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025164	exon20	c.C3167A	p.S1056X	.	.	.
TAGLN	6876	broad.mit.edu	36	11	116579009	116579009	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003186	exon2	c.G70A	p.E24K	.	.	.
RNF214	257160	broad.mit.edu	36	11	116656121	116656121	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077239	exon8	c.G1081T	p.E361X	.	.	.
CEP164	22897	broad.mit.edu	36	11	116785869	116785869	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014956	exon30	c.G4074T	p.E1358D	.	.	.
TMPRSS13	84000	broad.mit.edu	36	11	117278188	117278188	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077263	exon13	c.C1680T	p.S560S	.	.	.
TMPRSS4	56649	broad.mit.edu	36	11	117483781	117483781	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001173551	exon6	c.C517T	p.R173C	.	.	.
AMICA1	120425	broad.mit.edu	36	11	117579575	117579575	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153206	exon5	c.C520T	p.R174C	.	.	.
MPZL2	10205	broad.mit.edu	36	11	117640067	117640067	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144765	exon1	c.G12T	p.K4N	.	.	.
UBE4A	9354	broad.mit.edu	36	11	117744618	117744618	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004788	exon3	c.G184A	p.D62N	.	.	.
ATP5L	10632	broad.mit.edu	36	11	117782877	117782877	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006476	exon2	c.C68T	p.S23L	.	.	.
MLL	4297	broad.mit.edu	36	11	117848425	117848425	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005933	exon3	c.G1341A	p.P447P	.	.	.
MLL	4297	broad.mit.edu	36	11	117849291	117849291	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005933	exon3	c.G2207T	p.R736M	.	.	.
MLL	4297	broad.mit.edu	36	11	117864620	117864620	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005933	exon11	c.G4414T	p.E1472X	.	.	.
MLL	4297	broad.mit.edu	36	11	117878564	117878564	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005933	exon27	c.C6738A	p.V2246V	.	.	.
MLL	4297	broad.mit.edu	36	11	117881110	117881110	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005933	exon27	c.C9284A	p.P3095Q	.	.	.
MLL	4297	broad.mit.edu	36	11	117881953	117881953	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005933	exon27	c.G10127A	p.G3376D	.	.	.
ARCN1	372	broad.mit.edu	36	11	117957244	117957244	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001655	exon2	c.G77A	p.R26Q	.	.	.
BCL9L	283149	broad.mit.edu	36	11	118278273	118278273	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182557	exon6	c.G1389T	p.K463N	.	.	.
FOXR1	283150	broad.mit.edu	36	11	118355458	118355458	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181721	exon4	c.C481T	p.R161W	.	.	.
CBL	867	broad.mit.edu	36	11	118608601	118608601	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005188	exon2	c.G429T	p.E143D	.	.	.
CBL	867	broad.mit.edu	36	11	118647657	118647657	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005188	exon3	c.G446A	p.R149Q	.	.	.
CBL	867	broad.mit.edu	36	11	118674389	118674389	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005188	exon15	c.G2363A	p.R788Q	.	.	.
PVRL1	5818	broad.mit.edu	36	11	119051217	119051217	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002855	exon5	c.C865T	p.L289F	.	.	.
USP47	55031	broad.mit.edu	36	11	11914543	11914543	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017944	exon16	c.C1783A	p.L595I	.	.	.
USP47	55031	broad.mit.edu	36	11	11926166	11926166	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017944	exon20	c.C2986T	p.R996X	.	.	.
USP47	55031	broad.mit.edu	36	11	11933272	11933272	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017944	exon26	c.C3674T	p.A1225V	.	.	.
TRIM29	23650	broad.mit.edu	36	11	119491286	119491286	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012101	exon8	c.G1674T	p.Q558H	.	.	.
POU2F3	25833	broad.mit.edu	36	11	119683493	119683493	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014352	exon9	c.G865A	p.E289K	.	.	.
ARHGEF12	23365	broad.mit.edu	36	11	119824199	119824199	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001198665	exon19	c.G1612T	p.V538L	.	.	.
ARHGEF12	23365	broad.mit.edu	36	11	119835111	119835111	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001198665	exon25	c.G2342T	p.R781I	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120195704	120195704	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014619	exon4	c.T376C	p.F126L	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120328809	120328809	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014619	exon13	c.A1626C	p.P542P	.	.	.
TBCEL	219899	broad.mit.edu	36	11	120434296	120434296	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152715	exon6	c.A745C	p.N249H	.	.	.
TECTA	7007	broad.mit.edu	36	11	120485259	120485259	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005422	exon3	c.G328A	p.E110K	.	.	.
TECTA	7007	broad.mit.edu	36	11	120489082	120489082	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005422	exon4	c.C578T	p.A193V	.	.	.
TECTA	7007	broad.mit.edu	36	11	120505683	120505683	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005422	exon9	c.C2494A	p.L832I	.	.	.
TECTA	7007	broad.mit.edu	36	11	120505886	120505886	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005422	exon9	c.C2697A	p.D899E	.	.	.
TECTA	7007	broad.mit.edu	36	11	120513575	120513575	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005422	exon10	c.C3177A	p.I1059I	.	.	.
SC5DL	6309	broad.mit.edu	36	11	120680293	120680293	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006918	exon3	c.G224A	p.R75Q	.	.	.
BLID	414899	broad.mit.edu	36	11	121491839	121491839	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001786	exon1	c.T2G	p.M1R	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1222021	1222021	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002458	exon31	c.G7335A	p.T2445T	.	.	.
C11orf63	79864	broad.mit.edu	36	11	122261911	122261911	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024806	exon2	c.A144C	p.E48D	.	.	.
C11orf63	79864	broad.mit.edu	36	11	122280302	122280302	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024806	exon3	c.G804A	p.P268P	.	.	.
BSX	390259	broad.mit.edu	36	11	122353802	122353802	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098169	exon3	c.C467T	p.T156M	.	.	.
HSPA8	3312	broad.mit.edu	36	11	122435576	122435576	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153201	exon5	c.G935C	p.G312A	.	.	.
MICALCL	84953	broad.mit.edu	36	11	12272857	12272857	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032867	exon3	c.G1303T	p.D435Y	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1228413	1228413	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002458	exon31	c.G13727A	p.G4576D	.	.	.
GRAMD1B	57476	broad.mit.edu	36	11	122986177	122986177	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020716	exon13	c.G1411A	p.D471N	.	.	.
GRAMD1B	57476	broad.mit.edu	36	11	122988742	122988742	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020716	exon14	c.G1554T	p.K518N	.	.	.
SCN3B	55800	broad.mit.edu	36	11	123029708	123029708	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018400	exon1	c.C12A	p.F4L	.	.	.
ZNF202	7753	broad.mit.edu	36	11	123106773	123106773	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003455	exon4	c.C34A	p.L12I	.	.	.
OR6X1	390260	broad.mit.edu	36	11	123129882	123129882	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005188	exon1	c.C555T	p.A185A	.	.	.
OR6M1	390261	broad.mit.edu	36	11	123181895	123181895	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005325	exon1	c.T373C	p.C125R	.	.	.
TMEM225	338661	broad.mit.edu	36	11	123260475	123260475	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001013743	exon2	c.A260C	p.K87T	.	.	.
OR4D5	219875	broad.mit.edu	36	11	123316428	123316428	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001965	exon1	c.A895G	p.K299E	.	.	.
OR10S1	219873	broad.mit.edu	36	11	123353564	123353564	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004474	exon1	c.G45T	p.E15D	.	.	.
OR10G8	219869	broad.mit.edu	36	11	123405726	123405726	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004464	exon1	c.A187G	p.N63D	.	.	.
VWA5A	4013	broad.mit.edu	36	11	123499679	123499679	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014622	exon9	c.G1122T	p.Q374H	.	.	.
VWA5A	4013	broad.mit.edu	36	11	123512159	123512159	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014622	exon12	c.C1473A	p.I491I	.	.	.
VWA5A	4013	broad.mit.edu	36	11	123521850	123521850	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014622	exon18	c.C2349A	p.I783I	.	.	.
Unknown	0	broad.mit.edu	36	11	123625759	123625759	+	IGR	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001002905	exon1	c.C127A	p.L43M	.	.	.
Unknown	0	broad.mit.edu	36	11	123640456	123640456	+	IGR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005198	exon1	c.C524T	p.A175V	.	.	.
Unknown	0	broad.mit.edu	36	11	123640527	123640527	+	IGR	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005198	exon1	c.T595C	p.F199L	.	.	.
OR8B3	390271	broad.mit.edu	36	11	123771841	123771841	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005467	exon1	c.A617C	p.N206T	.	.	.
OR8B8	26493	broad.mit.edu	36	11	123816090	123816090	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012378	exon1	c.C102A	p.F34L	.	.	.
SIAE	54414	broad.mit.edu	36	11	124013731	124013731	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170601	exon9	c.G1237T	p.E413X	.	.	.
VSIG2	23584	broad.mit.edu	36	11	124126019	124126019	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014312	exon3	c.C228A	p.Y76X	.	.	.
ROBO3	64221	broad.mit.edu	36	11	124247487	124247487	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022370	exon8	c.G1159A	p.V387I	.	.	.
ROBO3	64221	broad.mit.edu	36	11	124250410	124250410	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022370	exon14	c.G2267A	p.S756N	.	.	.
ROBO4	54538	broad.mit.edu	36	11	124269401	124269401	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019055	exon8	c.C1224T	p.I408I	.	.	.
SLC37A2	219855	broad.mit.edu	36	11	124458965	124458965	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145290	exon11	c.G1021A	p.D341N	.	.	.
PKNOX2	63876	broad.mit.edu	36	11	124786926	124786926	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022062	exon10	c.G891A	p.K297K	.	.	.
PKNOX2	63876	broad.mit.edu	36	11	124806384	124806384	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022062	exon13	c.G1305T	p.E435D	.	.	.
FEZ1	9638	broad.mit.edu	36	11	124864751	124864751	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022549	exon2	c.G133A	p.E45K	.	.	.
EI24	9538	broad.mit.edu	36	11	124953282	124953282	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004879	exon6	c.C360A	p.F120L	.	.	.
PATE2	399967	broad.mit.edu	36	11	125153106	125153106	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_212555	exon3	c.G78A	p.A26A	.	.	.
PUS3	83480	broad.mit.edu	36	11	125270355	125270355	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031307	exon3	c.G918T	p.E306D	.	.	.
HYLS1	219844	broad.mit.edu	36	11	125275178	125275178	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145014	exon4	c.G705T	p.K235N	.	.	.
DDX25	29118	broad.mit.edu	36	11	125292131	125292131	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013264	exon9	c.C813T	p.S271S	.	.	.
CDON	50937	broad.mit.edu	36	11	125369447	125369447	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016952	exon14	c.C2592A	p.I864I	.	.	.
FAM118B	79607	broad.mit.edu	36	11	125610170	125610170	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024556	exon3	c.G64A	p.E22K	.	.	.
FAM118B	79607	broad.mit.edu	36	11	125631900	125631900	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024556	exon7	c.G925A	p.D309N	.	.	.
ETS1	2113	broad.mit.edu	36	11	127897043	127897043	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005238	exon1	c.C57A	p.V19V	.	.	.
FLI1	2313	broad.mit.edu	36	11	128185798	128185798	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001167681	exon9	c.G965T	p.R322I	.	.	.
ARHGAP32	9743	broad.mit.edu	36	11	128347812	128347812	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014715	exon12	c.G2710A	p.E904K	.	.	.
ARHGAP32	9743	broad.mit.edu	36	11	128349581	128349581	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014715	exon11	c.G1632A	p.P544P	.	.	.
TMEM45B	120224	broad.mit.edu	36	11	129227732	129227732	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138788	exon2	c.G145A	p.E49K	.	.	.
PRDM10	56980	broad.mit.edu	36	11	129277441	129277441	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020228	exon22	c.G3460A	p.E1154K	.	.	.
PRDM10	56980	broad.mit.edu	36	11	129290102	129290102	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020228	exon18	c.C2560T	p.R854X	.	.	.
ST14	6768	broad.mit.edu	36	11	129583571	129583571	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021978	exon17	c.G2051A	p.R684H	.	.	.
ZBTB44	29068	broad.mit.edu	36	11	129635966	129635966	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014155	exon2	c.C1013A	p.S338Y	.	.	.
ZBTB44	29068	broad.mit.edu	36	11	129636396	129636396	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014155	exon2	c.C583T	p.P195S	.	.	.
ADAMTS15	170689	broad.mit.edu	36	11	129846408	129846408	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139055	exon7	c.G1998T	p.K666N	.	.	.
SNX19	399979	broad.mit.edu	36	11	130289814	130289814	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014758	exon1	c.C1231A	p.L411M	.	.	.
SNX19	399979	broad.mit.edu	36	11	130289961	130289961	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014758	exon1	c.C1084T	p.R362X	.	.	.
OPCML	4978	broad.mit.edu	36	11	131811315	131811315	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001012393	exon7	c.G791T	p.R264M	.	.	.
SPATA19	219938	broad.mit.edu	36	11	133217612	133217612	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174927	exon5	c.C415T	p.R139X	.	.	.
ARNTL	406	broad.mit.edu	36	11	13332445	13332445	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001030272	exon4	c.G14T	p.R5I	.	.	.
ARNTL	406	broad.mit.edu	36	11	13352249	13352249	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001030273	exon14	c.G967T	p.E323X	.	.	.
ARNTL	406	broad.mit.edu	36	11	13353815	13353815	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001030273	exon15	c.C1123T	p.R375X	.	.	.
ACAD8	27034	broad.mit.edu	36	11	133633697	133633697	+	Missense_Mutation	SNP	G	T	T	rs35423297	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014384	exon4	c.G459T	p.E153D	.	.	.
GLB1L3	112937	broad.mit.edu	36	11	133689124	133689124	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080407	exon17	c.C1659A	p.F553L	.	.	.
PTH	5741	broad.mit.edu	36	11	13470733	13470733	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000315	exon3	c.C143T	p.S48L	.	.	.
SPON1	10418	broad.mit.edu	36	11	14053525	14053525	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006108	exon4	c.G537T	p.K179N	.	.	.
RRAS2	22800	broad.mit.edu	36	11	14273941	14273941	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012250	exon2	c.G145T	p.D49Y	.	.	.
COPB1	1315	broad.mit.edu	36	11	14457776	14457776	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016451	exon11	c.C1273T	p.R425C	.	.	.
COPB1	1315	broad.mit.edu	36	11	14472355	14472355	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016451	exon3	c.C298A	p.L100I	.	.	.
MOB2	81532	broad.mit.edu	36	11	1458288	1458288	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_053005	exon4	c.G183A	p.T61T	.	.	.
CALCB	797	broad.mit.edu	36	11	15053190	15053190	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000728	exon3	c.C94A	p.L32M	.	.	.
SOX6	55553	broad.mit.edu	36	11	16319181	16319181	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033326	exon2	c.C190A	p.Q64K	.	.	.
PLEKHA7	144100	broad.mit.edu	36	11	16773139	16773139	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175058	exon18	c.G2412T	p.E804D	.	.	.
PIK3C2A	5286	broad.mit.edu	36	11	17078035	17078035	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002645	exon25	c.G4066T	p.D1356Y	.	.	.
PIK3C2A	5286	broad.mit.edu	36	11	17096775	17096775	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002645	exon17	c.T3028C	p.L1010L	.	.	.
NUCB2	4925	broad.mit.edu	36	11	17308292	17308292	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005013	exon12	c.G1045T	p.E349X	.	.	.
ABCC8	6833	broad.mit.edu	36	11	17371847	17371847	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000352	exon38	c.C4581T	p.F1527F	.	.	.
USH1C	10083	broad.mit.edu	36	11	17487649	17487649	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153676	exon18	c.G1843T	p.D615Y	.	.	.
USH1C	10083	broad.mit.edu	36	11	17488599	17488599	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153676	exon17	c.C1459A	p.Q487K	.	.	.
USH1C	10083	broad.mit.edu	36	11	17499090	17499090	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153676	exon14	c.G1113T	p.K371N	.	.	.
KCNC1	3746	broad.mit.edu	36	11	17750740	17750740	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004976	exon2	c.G1523A	p.G508D	.	.	.
SERGEF	26297	broad.mit.edu	36	11	17971054	17971054	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012139	exon7	c.G685T	p.D229Y	.	.	.
TPH1	7166	broad.mit.edu	36	11	18018811	18018811	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004179	exon1	c.G75T	p.K25N	.	.	.
SAAL1	113174	broad.mit.edu	36	11	18061814	18061814	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138421	exon10	c.A1083C	p.Q361H	.	.	.
MRGPRX3	117195	broad.mit.edu	36	11	18116058	18116058	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_054031	exon3	c.G733A	p.D245N	.	.	.
SAA4	6291	broad.mit.edu	36	11	18214007	18214007	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006512	exon2	c.G43T	p.G15X	.	.	.
SAA1	6288	broad.mit.edu	36	11	18245048	18245048	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000331	exon2	c.T38C	p.V13A	.	.	.
HPS5	11234	broad.mit.edu	36	11	18274984	18274984	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181508	exon11	c.G1105T	p.E369X	.	.	.
GTF2H1	2965	broad.mit.edu	36	11	18330526	18330526	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142307	exon12	c.G1217T	p.S406I	.	.	.
LDHAL6A	160287	broad.mit.edu	36	11	18456907	18456907	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144972	exon7	c.A913C	p.K305Q	.	.	.
UEVLD	55293	broad.mit.edu	36	11	18522782	18522782	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040697	exon9	c.G1024T	p.E342X	.	.	.
SPTY2D1	144108	broad.mit.edu	36	11	18588013	18588013	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194285	exon6	c.C2029T	p.R677X	.	.	.
SPTY2D1	144108	broad.mit.edu	36	11	18590569	18590569	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194285	exon4	c.G1754A	p.R585Q	.	.	.
SPTY2D1	144108	broad.mit.edu	36	11	18593496	18593496	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194285	exon3	c.C901T	p.R301C	.	.	.
IGSF22	283284	broad.mit.edu	36	11	18687610	18687610	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173588	exon18	c.C2898T	p.I966I	.	.	.
IGSF22	283284	broad.mit.edu	36	11	18692464	18692464	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173588	exon13	c.G1734A	p.E578E	.	.	.
MRGPRX1	259249	broad.mit.edu	36	11	18912626	18912626	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_147199	exon1	c.C282A	p.I94I	.	.	.
E2F8	79733	broad.mit.edu	36	11	19216247	19216247	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024680	exon3	c.C24A	p.L8L	.	.	.
NAV2	89797	broad.mit.edu	36	11	19911808	19911808	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001111018	exon7	c.C1250A	p.S417Y	.	.	.
RIC8A	60626	broad.mit.edu	36	11	199294	199294	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021932	exon2	c.T108G	p.D36E	.	.	.
NAV2	89797	broad.mit.edu	36	11	20026912	20026912	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001111018	exon15	c.C3773T	p.S1258L	.	.	.
DBX1	120237	broad.mit.edu	36	11	20137356	20137356	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001029865	exon2	c.C426T	p.F142F	.	.	.
HTATIP2	10553	broad.mit.edu	36	11	20345302	20345302	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001098520	exon3	c.G304T	p.E102X	.	.	.
PRMT3	10196	broad.mit.edu	36	11	20404968	20404968	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005788	exon10	c.T974C	p.V325A	.	.	.
SLC6A5	9152	broad.mit.edu	36	11	20582530	20582530	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004211	exon3	c.C663A	p.A221A	.	.	.
SLC6A5	9152	broad.mit.edu	36	11	20624984	20624984	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004211	exon14	c.G1998T	p.E666D	.	.	.
NELL1	4745	broad.mit.edu	36	11	20761936	20761936	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006157	exon3	c.C319T	p.R107X	.	.	.
NELL1	4745	broad.mit.edu	36	11	21512600	21512600	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006157	exon16	c.G1750A	p.D584N	.	.	.
ANO5	203859	broad.mit.edu	36	11	22251001	22251001	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142649	exon19	c.G2122A	p.A708T	.	.	.
SLC17A6	57084	broad.mit.edu	36	11	22340903	22340903	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020346	exon6	c.T704G	p.I235S	.	.	.
SLC17A6	57084	broad.mit.edu	36	11	22348248	22348248	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020346	exon8	c.T979C	p.Y327H	.	.	.
FANCF	2188	broad.mit.edu	36	11	22603865	22603865	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022725	exon1	c.T68C	p.V23A	.	.	.
SVIP	258010	broad.mit.edu	36	11	22805386	22805386	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_148893	exon3	c.G162T	p.K54N	.	.	.
LUZP2	338645	broad.mit.edu	36	11	24707379	24707379	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001009909	exon2	c.G151T	p.E51X	.	.	.
MUC15	143662	broad.mit.edu	36	11	26543900	26543900	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135092	exon3	c.G163T	p.D55Y	.	.	.
ANO3	63982	broad.mit.edu	36	11	26576495	26576495	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031418	exon15	c.C1455A	p.V485V	.	.	.
ANO3	63982	broad.mit.edu	36	11	26621385	26621385	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031418	exon23	c.G2356A	p.E786K	.	.	.
SLC5A12	159963	broad.mit.edu	36	11	26651530	26651530	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178498	exon14	c.G1702A	p.E568K	.	.	.
SLC5A12	159963	broad.mit.edu	36	11	26699757	26699757	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178498	exon1	c.C81A	p.F27L	.	.	.
BBOX1	8424	broad.mit.edu	36	11	27071482	27071482	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003986	exon5	c.T526G	p.F176V	.	.	.
CCDC34	91057	broad.mit.edu	36	11	27335634	27335634	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030771	exon2	c.A390C	p.E130D	.	.	.
LGR4	55366	broad.mit.edu	36	11	27347083	27347083	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018490	exon18	c.G1763A	p.G588E	.	.	.
LGR4	55366	broad.mit.edu	36	11	27352111	27352111	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018490	exon14	c.C1240T	p.P414S	.	.	.
KIF18A	81930	broad.mit.edu	36	11	28060984	28060984	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031217	exon9	c.C1257T	p.I419I	.	.	.
KIF18A	81930	broad.mit.edu	36	11	28076022	28076022	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031217	exon2	c.C49T	p.R17C	.	.	.
NAP1L4	4676	broad.mit.edu	36	11	2929121	2929121	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005969	exon14	c.G1066T	p.E356X	.	.	.
IFITM2	10581	broad.mit.edu	36	11	298216	298216	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006435	exon1	c.C24A	p.F8L	.	.	.
CARS	833	broad.mit.edu	36	11	2998129	2998129	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001014437	exon11	c.G1163T	p.S388I	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29989010	29989010	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002233	exon2	c.C1792T	p.R598W	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29990076	29990076	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002233	exon2	c.G726A	p.K242K	.	.	.
Unknown	0	broad.mit.edu	36	11	30859305	30859305	+	IGR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020869	exon19	c.G2911A	p.G971R	.	.	.
Unknown	0	broad.mit.edu	36	11	30877740	30877740	+	IGR	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020869	exon16	c.G2391T	p.E797D	.	.	.
Unknown	0	broad.mit.edu	36	11	30893676	30893676	+	IGR	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020869	exon8	c.C1205A	p.S402Y	.	.	.
Unknown	0	broad.mit.edu	36	11	30909896	30909896	+	IGR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020869	exon1	c.G132A	p.T44T	.	.	.
Unknown	0	broad.mit.edu	36	11	30909965	30909965	+	IGR	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020869	exon1	c.G63T	p.Q21H	.	.	.
PAX6	5080	broad.mit.edu	36	11	31771868	31771868	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127612	exon10	c.G824T	p.R275I	.	.	.
PAX6	5080	broad.mit.edu	36	11	31772850	31772850	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127612	exon8	c.G586T	p.D196Y	.	.	.
RCN1	5954	broad.mit.edu	36	11	32075371	32075371	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002901	exon2	c.C360T	p.V120V	.	.	.
WT1	7490	broad.mit.edu	36	11	32378146	32378146	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198551	exon6	c.G386A	p.S129N	WT1,peritoneum,NS,Substitution - Missense,-1	.	.
CCDC73	493860	broad.mit.edu	36	11	32589323	32589323	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008391	exon17	c.G2961T	p.K987N	.	.	.
CCDC73	493860	broad.mit.edu	36	11	32592660	32592660	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008391	exon16	c.G1780T	p.D594Y	.	.	.
CCDC73	493860	broad.mit.edu	36	11	32620172	32620172	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008391	exon13	c.G972T	p.E324D	.	.	.
CCDC73	493860	broad.mit.edu	36	11	32653718	32653718	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008391	exon9	c.A614C	p.K205T	.	.	.
QSER1	79832	broad.mit.edu	36	11	32910901	32910901	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001076786	exon4	c.T1134G	p.F378L	.	.	.
QSER1	79832	broad.mit.edu	36	11	32954460	32954460	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001076786	exon13	c.C5072A	p.S1691Y	.	.	.
CSTF3	1479	broad.mit.edu	36	11	33063855	33063855	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001326	exon20	c.G1931A	p.R644Q	.	.	.
HIPK3	10114	broad.mit.edu	36	11	33317581	33317581	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001048200	exon6	c.G1538T	p.R513I	.	.	.
HIPK3	10114	broad.mit.edu	36	11	33326689	33326689	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001048200	exon12	c.T2352C	p.I784I	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33520996	33520996	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012194	exon1	c.C420A	p.A140A	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33521140	33521140	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012194	exon1	c.C564A	p.I188I	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33521771	33521771	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012194	exon1	c.T1195G	p.F399V	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33521952	33521952	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012194	exon1	c.C1376A	p.S459Y	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33537980	33537980	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012194	exon6	c.C3074T	p.S1025L	.	.	.
LMO2	4005	broad.mit.edu	36	11	33837522	33837522	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142316	exon3	c.G433A	p.E145K	.	.	.
CAPRIN1	4076	broad.mit.edu	36	11	34057814	34057814	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203364	exon7	c.A752G	p.N251S	.	.	.
CAPRIN1	4076	broad.mit.edu	36	11	34061099	34061099	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203364	exon9	c.G901A	p.A301T	.	.	.
NAT10	55226	broad.mit.edu	36	11	34090184	34090184	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024662	exon4	c.G210T	p.K70N	.	.	.
NAT10	55226	broad.mit.edu	36	11	34109040	34109040	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144030	exon11	c.C1133T	p.T378M	.	.	.
CAT	847	broad.mit.edu	36	11	34434313	34434313	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001752	exon7	c.C891T	p.F297F	.	.	.
PDHX	8050	broad.mit.edu	36	11	34956278	34956278	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003477	exon8	c.C996A	p.I332I	.	.	.
SLC1A2	6506	broad.mit.edu	36	11	35290359	35290359	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004171	exon4	c.C523A	p.L175I	.	.	.
PAMR1	25891	broad.mit.edu	36	11	35412707	35412707	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001991	exon10	c.G1555T	p.D519Y	.	.	.
RAG1	5896	broad.mit.edu	36	11	36551937	36551937	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000448	exon2	c.G507A	p.S169S	.	.	.
RAG1	5896	broad.mit.edu	36	11	36553090	36553090	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000448	exon2	c.G1660A	p.D554N	.	.	.
NUP98	4928	broad.mit.edu	36	11	3661169	3661169	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139132	exon29	c.G4533T	p.E1511D	.	.	.
NUP98	4928	broad.mit.edu	36	11	3697281	3697281	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005387	exon18	c.G2387T	p.R796M	.	.	.
NUP98	4928	broad.mit.edu	36	11	3709366	3709366	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005387	exon14	c.C1612A	p.P538T	.	.	.
PGAP2	27315	broad.mit.edu	36	11	3795179	3795179	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014489	exon3	c.C186A	p.F62L	.	.	.
PGAP2	27315	broad.mit.edu	36	11	3795272	3795272	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014489	exon3	c.C279T	p.F93F	.	.	.
LRRC4C	57689	broad.mit.edu	36	11	40093453	40093453	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020929	exon2	c.G966A	p.S322S	.	.	.
RRM1	6240	broad.mit.edu	36	11	4104866	4104866	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001033	exon14	c.G1496A	p.R499H	.	.	.
OR52B4	143496	broad.mit.edu	36	11	4345519	4345519	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005161	exon1	c.C583T	p.R195X	.	.	.
OR52B4	143496	broad.mit.edu	36	11	4345586	4345586	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005161	exon1	c.G516A	p.Q172Q	.	.	.
HSD17B12	51144	broad.mit.edu	36	11	43832858	43832858	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016142	exon10	c.C702T	p.F234F	.	.	.
ACCSL	390110	broad.mit.edu	36	11	44031577	44031577	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031854	exon8	c.C994A	p.L332M	.	.	.
ACCSL	390110	broad.mit.edu	36	11	44037970	44037970	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031854	exon14	c.G1631A	p.R544H	.	.	.
ACCS	84680	broad.mit.edu	36	11	44045808	44045808	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032592	exon2	c.A55G	p.T19A	.	.	.
ACCS	84680	broad.mit.edu	36	11	44045956	44045956	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032592	exon2	c.G203T	p.R68I	.	.	.
ACCS	84680	broad.mit.edu	36	11	44057744	44057744	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032592	exon10	c.A921C	p.E307D	.	.	.
ACCS	84680	broad.mit.edu	36	11	44061346	44061346	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032592	exon13	c.C1163T	p.A388V	.	.	.
EXT2	2132	broad.mit.edu	36	11	44122399	44122399	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001178083	exon8	c.G1200T	p.E400D	.	.	.
OR52K1	390036	broad.mit.edu	36	11	4467483	4467483	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005171	exon1	c.C777A	p.I259I	.	.	.
TSPAN18	90139	broad.mit.edu	36	11	44897998	44897998	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130783	exon7	c.C487T	p.R163X	.	.	.
C11orf40	143501	broad.mit.edu	36	11	4551122	4551122	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144663	exon2	c.T298G	p.F100V	.	.	.
C11orf40	143501	broad.mit.edu	36	11	4555576	4555576	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144663	exon1	c.C51A	p.S17S	.	.	.
OR52I2	143502	broad.mit.edu	36	11	4565109	4565109	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005170	exon1	c.G491T	p.R164I	.	.	.
OR52I1	390037	broad.mit.edu	36	11	4572002	4572002	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005169	exon1	c.T158G	p.I53S	.	.	.
OR52I1	390037	broad.mit.edu	36	11	4572211	4572211	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005169	exon1	c.G367A	p.A123T	.	.	.
PEX16	9409	broad.mit.edu	36	11	45893850	45893850	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_057174	exon4	c.C339T	p.I113I	.	.	.
GYLTL1B	120071	broad.mit.edu	36	11	45906489	45906489	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152312	exon13	c.T1940G	p.L647R	.	.	.
PHF21A	51317	broad.mit.edu	36	11	45913866	45913866	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001101802	exon17	c.C1682A	p.A561E	.	.	.
PHF21A	51317	broad.mit.edu	36	11	45947950	45947950	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001101802	exon8	c.C691A	p.L231I	.	.	.
OR51E1	143503	broad.mit.edu	36	11	4630528	4630528	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152430	exon2	c.C196A	p.L66I	.	.	.
CHRM4	1132	broad.mit.edu	36	11	46363497	46363497	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000741	exon1	c.G1187A	p.R396H	.	.	.
OR51E2	81285	broad.mit.edu	36	11	4659733	4659733	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030774	exon2	c.G785A	p.R262H	.	.	.
ATG13	9776	broad.mit.edu	36	11	46650413	46650413	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142673	exon18	c.G1509T	p.E503D	.	.	.
F2	2147	broad.mit.edu	36	11	46717455	46717455	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000506	exon14	c.A1790G	p.D597G	.	.	.
LRP4	4038	broad.mit.edu	36	11	46859879	46859879	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002334	exon20	c.G2764A	p.A922T	.	.	.
ARFGAP2	84364	broad.mit.edu	36	11	47149596	47149596	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032389	exon10	c.C898T	p.R300X	.	.	.
DDB2	1643	broad.mit.edu	36	11	47216065	47216065	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000107	exon8	c.C1125T	p.F375F	.	.	.
MADD	8567	broad.mit.edu	36	11	47287718	47287718	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003682	exon28	c.C4137A	p.I1379I	.	.	.
MADD	8567	broad.mit.edu	36	11	47289892	47289892	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003682	exon29	c.C4192T	p.R1398C	.	.	.
OR51F1	256892	broad.mit.edu	36	11	4746931	4746931	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004752	exon1	c.C793T	p.R265C	.	.	.
AGBL2	79841	broad.mit.edu	36	11	47645132	47645132	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024783	exon16	c.G2400T	p.E800D	.	.	.
AGBL2	79841	broad.mit.edu	36	11	47655444	47655444	+	Nonsense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024783	exon13	c.T2102G	p.L701X	.	.	.
AGBL2	79841	broad.mit.edu	36	11	47658173	47658173	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024783	exon12	c.C1944T	p.I648I	.	.	.
AGBL2	79841	broad.mit.edu	36	11	47664075	47664075	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024783	exon10	c.C1734T	p.Y578Y	.	.	.
PTPRJ	5795	broad.mit.edu	36	11	48117747	48117747	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002843	exon11	c.G2286A	p.A762A	.	.	.
PTPRJ	5795	broad.mit.edu	36	11	48128309	48128309	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002843	exon18	c.G3136A	p.E1046K	.	.	.
OR4B1	119765	broad.mit.edu	36	11	48195341	48195341	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005470	exon1	c.G404A	p.S135N	.	.	.
OR4X2	119764	broad.mit.edu	36	11	48223394	48223394	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004727	exon1	c.C163A	p.L55I	.	.	.
OR51S1	119692	broad.mit.edu	36	11	4826435	4826435	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004758	exon1	c.C580T	p.R194C	.	.	.
OR4C3	256144	broad.mit.edu	36	11	48303893	48303893	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004702	exon1	c.C825A	p.F275L	.	.	.
OR4A47	403253	broad.mit.edu	36	11	48467428	48467428	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005512	exon1	c.A508T	p.N170Y	.	.	.
OR51T1	401665	broad.mit.edu	36	11	4859627	4859627	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004759	exon1	c.G3T	p.M1I	.	.	.
OR51T1	401665	broad.mit.edu	36	11	4860080	4860080	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004759	exon1	c.C456T	p.F152F	.	.	.
OR51G2	81282	broad.mit.edu	36	11	4892989	4892989	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005238	exon1	c.A481C	p.I161L	.	.	.
OR51G2	81282	broad.mit.edu	36	11	4893146	4893146	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005238	exon1	c.C324A	p.F108L	.	.	.
MMP26	56547	broad.mit.edu	36	11	4968447	4968447	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021801	exon3	c.G364T	p.D122Y	.	.	.
MMP26	56547	broad.mit.edu	36	11	4969864	4969864	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021801	exon5	c.C690A	p.Y230X	.	.	.
OR51L1	119682	broad.mit.edu	36	11	4977466	4977466	+	Silent	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004755	exon1	c.T678A	p.T226T	.	.	.
OR4C13	283092	broad.mit.edu	36	11	49931178	49931178	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001955	exon1	c.C628A	p.L210I	.	.	.
OR4C12	283093	broad.mit.edu	36	11	49960139	49960139	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005270	exon1	c.C475A	p.L159I	.	.	.
OR52A5	390054	broad.mit.edu	36	11	5109932	5109932	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005160	exon1	c.C517T	p.R173X	.	.	.
OR4A5	81318	broad.mit.edu	36	11	51268936	51268936	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005272	exon1	c.C36T	p.L12L	.	.	.
OR51B4	79339	broad.mit.edu	36	11	5279453	5279453	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033179	exon1	c.C300A	p.F100L	.	.	.
OR51B2	79345	broad.mit.edu	36	11	5301598	5301598	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033180	exon1	c.C506T	p.S169F	.	.	.
OR51B6	390058	broad.mit.edu	36	11	5330164	5330164	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004750	exon1	c.T851G	p.F284C	.	.	.
OR51M1	390059	broad.mit.edu	36	11	5367608	5367608	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004756	exon1	c.T404G	p.L135R	.	.	.
OR51I1	390063	broad.mit.edu	36	11	5418545	5418545	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005288	exon1	c.C776T	p.A259V	.	.	.
OR51I1	390063	broad.mit.edu	36	11	5418917	5418917	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005288	exon1	c.T404C	p.V135A	.	.	.
OR51I2	390064	broad.mit.edu	36	11	5431331	5431331	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004754	exon1	c.C37A	p.L13I	.	.	.
OR52D1	390066	broad.mit.edu	36	11	5466649	5466649	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005163	exon1	c.C137T	p.A46V	.	.	.
OR52D1	390066	broad.mit.edu	36	11	5466884	5466884	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005163	exon1	c.T372A	p.D124E	.	.	.
UBQLN3	50613	broad.mit.edu	36	11	5485564	5485564	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017481	exon2	c.G1801T	p.D601Y	.	.	.
UBQLN3	50613	broad.mit.edu	36	11	5486314	5486314	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017481	exon2	c.G1051A	p.E351K	.	.	.
OR4C15	81309	broad.mit.edu	36	11	55078703	55078703	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001920	exon1	c.C345A	p.F115L	.	.	.
OR4C15	81309	broad.mit.edu	36	11	55079308	55079308	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001920	exon1	c.C950A	p.A317D	.	.	.
OR4C15	81309	broad.mit.edu	36	11	55079468	55079468	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001920	exon1	c.T1110G	p.L370L	.	.	.
OR4C6	219432	broad.mit.edu	36	11	55190067	55190067	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004704	exon1	c.G849T	p.L283F	.	.	.
OR52H1	390067	broad.mit.edu	36	11	5523140	5523140	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005289	exon1	c.C190A	p.H64N	.	.	.
OR5D13	390142	broad.mit.edu	36	11	55298267	55298267	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001967	exon1	c.C778A	p.L260I	.	.	.
OR5L1	219437	broad.mit.edu	36	11	55335729	55335729	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004738	exon1	c.T211G	p.F71V	.	.	.
OR5L1	219437	broad.mit.edu	36	11	55336157	55336157	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004738	exon1	c.C639T	p.I213I	.	.	.
OR5L1	219437	broad.mit.edu	36	11	55336302	55336302	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004738	exon1	c.C784T	p.P262S	.	.	.
OR5D18	219438	broad.mit.edu	36	11	55344227	55344227	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001952	exon1	c.C546A	p.F182L	.	.	.
OR5L2	26338	broad.mit.edu	36	11	55351737	55351737	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004739	exon1	c.C467A	p.S156Y	.	.	.
SPRYD5	84767	broad.mit.edu	36	11	55415560	55415560	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032681	exon7	c.T1235C	p.F412S	.	.	.
OR5W2	390148	broad.mit.edu	36	11	55438141	55438141	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001960	exon1	c.G494A	p.R165H	.	.	.
OR5I1	10798	broad.mit.edu	36	11	55459799	55459799	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006637	exon1	c.C654A	p.I218I	.	.	.
OR5F1	338674	broad.mit.edu	36	11	55518160	55518160	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003697	exon1	c.T518C	p.V173A	.	.	.
OR5F1	338674	broad.mit.edu	36	11	55518378	55518378	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003697	exon1	c.G300T	p.Q100H	.	.	.
OR5AS1	219447	broad.mit.edu	36	11	55554848	55554848	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001921	exon1	c.C378A	p.I126I	.	.	.
OR8H3	390152	broad.mit.edu	36	11	55646981	55646981	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005201	exon1	c.C557A	p.A186D	.	.	.
OR5J2	282775	broad.mit.edu	36	11	55701380	55701380	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005492	exon1	c.C711A	p.A237A	.	.	.
OR5T3	390154	broad.mit.edu	36	11	55776545	55776545	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004747	exon1	c.C294A	p.F98L	.	.	.
OR5T3	390154	broad.mit.edu	36	11	55776681	55776681	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004747	exon1	c.C430A	p.L144I	.	.	.
OR8H1	219469	broad.mit.edu	36	11	55814198	55814198	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005199	exon1	c.G917T	p.R306I	.	.	.
OR8J1	219477	broad.mit.edu	36	11	55884790	55884790	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005205	exon1	c.C492A	p.F164L	.	.	.
OR8J1	219477	broad.mit.edu	36	11	55885002	55885002	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005205	exon1	c.A704C	p.K235T	.	.	.
TRIM6	117854	broad.mit.edu	36	11	5589101	5589101	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001003818	exon8	c.C1504A	p.P502T	.	.	.
Unknown	0	broad.mit.edu	36	11	55900131	55900131	+	IGR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005204	exon1	c.C456T	p.S152S	.	.	.
OR5M9	390162	broad.mit.edu	36	11	55987231	55987231	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004743	exon1	c.G223A	p.V75I	.	.	.
OR5M3	219482	broad.mit.edu	36	11	55994250	55994250	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004742	exon1	c.C300A	p.F100L	.	.	.
OR5M8	219484	broad.mit.edu	36	11	56014740	56014740	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005282	exon1	c.G683A	p.R228H	.	.	.
OR5M10	390167	broad.mit.edu	36	11	56101243	56101243	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004741	exon1	c.C531A	p.F177L	.	.	.
OR5M1	390168	broad.mit.edu	36	11	56137497	56137497	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004740	exon1	c.G58A	p.D20N	.	.	.
TRIM22	10346	broad.mit.edu	36	11	5674432	5674432	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199573	exon2	c.C394T	p.R132C	.	.	.
TNKS1BP1	85456	broad.mit.edu	36	11	56834295	56834295	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033396	exon6	c.C2466T	p.D822D	.	.	.
SSRP1	6749	broad.mit.edu	36	11	56850861	56850861	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003146	exon16	c.G1950T	p.K650N	.	.	.
PRG3	10394	broad.mit.edu	36	11	56903816	56903816	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006093	exon3	c.A102C	p.A34A	.	.	.
PRG2	5553	broad.mit.edu	36	11	56913268	56913268	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002728	exon3	c.G157A	p.E53K	.	.	.
SERPING1	710	broad.mit.edu	36	11	57124001	57124001	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000062	exon3	c.A125G	p.E42G	.	.	.
ZDHHC5	25921	broad.mit.edu	36	11	57217956	57217956	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015457	exon8	c.G878T	p.R293I	.	.	.
TMX2	51075	broad.mit.edu	36	11	57262788	57262788	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015959	exon5	c.T518G	p.F173C	.	.	.
CTNND1	1500	broad.mit.edu	36	11	57325959	57325959	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001331	exon7	c.T1135G	p.L379V	.	.	.
OR9Q1	219956	broad.mit.edu	36	11	57704134	57704134	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005212	exon3	c.C642A	p.I214I	.	.	.
OR1S1	219959	broad.mit.edu	36	11	57739098	57739098	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004458	exon1	c.T306C	p.S102S	.	.	.
OR5B3	441608	broad.mit.edu	36	11	57926890	57926890	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005469	exon1	c.G569T	p.R190I	.	.	.
OR5B12	390191	broad.mit.edu	36	11	57963717	57963717	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004733	exon1	c.T484A	p.F162I	.	.	.
OR5B12	390191	broad.mit.edu	36	11	57963929	57963929	+	Nonsense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004733	exon1	c.T272A	p.L91X	.	.	.
OR5B21	219968	broad.mit.edu	36	11	58031632	58031632	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005218	exon1	c.T523G	p.F175V	.	.	.
LPXN	9404	broad.mit.edu	36	11	58051576	58051576	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143995	exon9	c.C1103T	p.S368L	.	.	.
ZFP91	80829	broad.mit.edu	36	11	58141644	58141644	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_053023	exon11	c.C1602A	p.I534I	.	.	.
OR52E8	390079	broad.mit.edu	36	11	5834684	5834684	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005168	exon1	c.G825T	p.Q275H	.	.	.
GLYATL2	219970	broad.mit.edu	36	11	58361114	58361114	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145016	exon5	c.G426T	p.K142N	.	.	.
GLYATL1	92292	broad.mit.edu	36	11	58478903	58478903	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080661	exon5	c.A364G	p.N122D	.	.	.
GLYATL1	92292	broad.mit.edu	36	11	58479959	58479959	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080661	exon7	c.C885A	p.I295I	.	.	.
OR52E4	390081	broad.mit.edu	36	11	5862304	5862304	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005165	exon1	c.C206A	p.S69Y	.	.	.
OR52E4	390081	broad.mit.edu	36	11	5862695	5862695	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005165	exon1	c.C597A	p.I199I	.	.	.
OR52E4	390081	broad.mit.edu	36	11	5862874	5862874	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005165	exon1	c.C776A	p.S259Y	.	.	.
FAM111B	374393	broad.mit.edu	36	11	58648370	58648370	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142703	exon3	c.A134C	p.N45T	.	.	.
FAM111B	374393	broad.mit.edu	36	11	58648734	58648734	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142703	exon3	c.G498T	p.K166N	.	.	.
FAM111B	374393	broad.mit.edu	36	11	58649395	58649395	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142703	exon3	c.C1159T	p.R387W	.	.	.
FAM111B	374393	broad.mit.edu	36	11	58649684	58649684	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142703	exon3	c.C1448T	p.A483V	.	.	.
FAM111B	374393	broad.mit.edu	36	11	58650217	58650217	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142703	exon3	c.C1981A	p.L661I	.	.	.
FAM111A	63901	broad.mit.edu	36	11	58676416	58676416	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142521	exon5	c.C699A	p.S233S	.	.	.
FAM111A	63901	broad.mit.edu	36	11	58677331	58677331	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142521	exon5	c.T1614C	p.F538F	.	.	.
OR4D6	219983	broad.mit.edu	36	11	58981102	58981102	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004708	exon1	c.C93A	p.F31L	.	.	.
OR4D10	390197	broad.mit.edu	36	11	59001509	59001509	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004705	exon1	c.G31T	p.E11X	.	.	.
OR4D10	390197	broad.mit.edu	36	11	59001816	59001816	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004705	exon1	c.T338G	p.F113C	.	.	.
OR4D11	219986	broad.mit.edu	36	11	59027931	59027931	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004706	exon1	c.C307A	p.L103I	.	.	.
OR4D9	390199	broad.mit.edu	36	11	59038972	59038972	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004711	exon1	c.G11A	p.R4K	.	.	.
OR56A3	390083	broad.mit.edu	36	11	5925535	5925535	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001003443	exon1	c.T383C	p.V128A	.	.	.
STX3	6809	broad.mit.edu	36	11	59317537	59317537	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001178040	exon8	c.G649T	p.D217Y	.	.	.
GIF	2694	broad.mit.edu	36	11	59355754	59355754	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005142	exon8	c.C1165A	p.L389I	.	.	.
GIF	2694	broad.mit.edu	36	11	59366590	59366590	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005142	exon4	c.C413T	p.A138V	.	.	.
TCN1	6947	broad.mit.edu	36	11	59383276	59383276	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001062	exon5	c.G597T	p.K199N	.	.	.
MS4A2	2206	broad.mit.edu	36	11	59613864	59613864	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000139	exon2	c.C180T	p.F60F	.	.	.
MS4A2	2206	broad.mit.edu	36	11	59618094	59618094	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000139	exon6	c.G619T	p.E207X	.	.	.
OR52L1	338751	broad.mit.edu	36	11	5964611	5964611	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005173	exon1	c.G126A	p.Q42Q	.	.	.
OR56A4	120793	broad.mit.edu	36	11	5980134	5980134	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005179	exon1	c.C821A	p.S274Y	.	.	.
MS4A4A	51338	broad.mit.edu	36	11	59821322	59821322	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_148975	exon3	c.G278A	p.G93E	.	.	.
MS4A4A	51338	broad.mit.edu	36	11	59825090	59825090	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_148975	exon4	c.G371T	p.R124I	.	.	.
MS4A14	84689	broad.mit.edu	36	11	59940152	59940152	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032597	exon5	c.G1135T	p.D379Y	.	.	.
MS4A14	84689	broad.mit.edu	36	11	59940516	59940516	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032597	exon5	c.G1499T	p.R500I	.	.	.
MS4A5	64232	broad.mit.edu	36	11	59971771	59971771	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023945	exon5	c.G566T	p.C189F	.	.	.
MS4A1	931	broad.mit.edu	36	11	59992454	59992454	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021950	exon7	c.G831A	p.T277T	.	.	.
OR56A1	120796	broad.mit.edu	36	11	6004740	6004740	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001917	exon1	c.C771A	p.F257L	.	.	.
MS4A8B	83661	broad.mit.edu	36	11	60224917	60224917	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031457	exon2	c.C8T	p.S3L	.	.	.
MS4A15	219995	broad.mit.edu	36	11	60297910	60297910	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001098835	exon6	c.G523A	p.V175M	.	.	.
MS4A15	219995	broad.mit.edu	36	11	60299669	60299669	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001098835	exon7	c.C628T	p.P210S	.	.	.
MS4A10	341116	broad.mit.edu	36	11	60315088	60315088	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206893	exon3	c.G249A	p.K83K	.	.	.
CCDC86	79080	broad.mit.edu	36	11	60366599	60366599	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024098	exon1	c.G426T	p.K142N	.	.	.
ZP1	22917	broad.mit.edu	36	11	60391788	60391788	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207341	exon1	c.C178T	p.L60F	.	.	.
ZP1	22917	broad.mit.edu	36	11	60395154	60395154	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207341	exon5	c.C975A	p.V325V	.	.	.
TMEM109	79073	broad.mit.edu	36	11	60445865	60445865	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024092	exon4	c.C384T	p.V128V	.	.	.
TMEM132A	54972	broad.mit.edu	36	11	60460920	60460920	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017870	exon11	c.C3040T	p.R1014C	.	.	.
CD5	921	broad.mit.edu	36	11	60643390	60643390	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014207	exon5	c.A572G	p.D191G	.	.	.
CD5	921	broad.mit.edu	36	11	60649092	60649092	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014207	exon9	c.G1292A	p.R431H	.	.	.
VPS37C	55048	broad.mit.edu	36	11	60658146	60658146	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017966	exon3	c.C203T	p.S68L	.	.	.
DDB1	1642	broad.mit.edu	36	11	60846386	60846386	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001923	exon9	c.C1080T	p.V360V	.	.	.
DDB1	1642	broad.mit.edu	36	11	60847096	60847096	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001923	exon8	c.T968G	p.F323C	.	.	.
TMEM138	51524	broad.mit.edu	36	11	60890096	60890096	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016464	exon3	c.C132A	p.I44I	.	.	.
CPSF7	79869	broad.mit.edu	36	11	60940316	60940316	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001136040	exon6	c.C802T	p.P268S	.	.	.
SDHAF2	54949	broad.mit.edu	36	11	60961707	60961707	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017841	exon2	c.C71A	p.P24H	.	.	.
C11orf66	220004	broad.mit.edu	36	11	61005910	61005910	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145017	exon2	c.C53T	p.S18L	.	.	.
CDHR5	53841	broad.mit.edu	36	11	611658	611658	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031264	exon5	c.G411A	p.T137T	.	.	.
C11orf9	745	broad.mit.edu	36	11	61298073	61298073	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013279	exon8	c.G1147A	p.D383N	.	.	.
FEN1	2237	broad.mit.edu	36	11	61320395	61320395	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004111	exon2	c.G986A	p.S329N	.	.	.
SCGB1D1	10648	broad.mit.edu	36	11	61717461	61717461	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006552	exon3	c.G258T	p.E86D	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62042829	62042829	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001620	exon5	c.C15636T	p.V5212V	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62042891	62042891	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001620	exon5	c.C15574T	p.P5192S	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62043570	62043570	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001620	exon5	c.C14895T	p.I4965I	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62046849	62046849	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001620	exon5	c.G11616T	p.K3872N	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62047301	62047301	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001620	exon5	c.G11164A	p.E3722K	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62050368	62050368	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001620	exon5	c.G8097T	p.E2699D	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62052903	62052903	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001620	exon5	c.G5562T	p.K1854N	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62054115	62054115	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001620	exon5	c.G4350T	p.K1450N	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62054226	62054226	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001620	exon5	c.C4239T	p.V1413V	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62056105	62056105	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001620	exon5	c.T2360G	p.V787G	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62060030	62060030	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024060	exon3	c.G117T	p.Q39H	.	.	.
B3GAT3	26229	broad.mit.edu	36	11	62141090	62141090	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012200	exon3	c.G563T	p.G188V	.	.	.
CNGA4	1262	broad.mit.edu	36	11	6218062	6218062	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037329	exon4	c.C462T	p.F154F	.	.	.
NXF1	10482	broad.mit.edu	36	11	62322609	62322609	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006362	exon11	c.G1031A	p.R344Q	.	.	.
SLC22A6	9356	broad.mit.edu	36	11	62503577	62503577	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004790	exon8	c.C1320T	p.C440C	.	.	.
SLC22A25	387601	broad.mit.edu	36	11	62752554	62752554	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199352	exon2	c.C461A	p.A154D	.	.	.
SLC22A25	387601	broad.mit.edu	36	11	62753685	62753685	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199352	exon1	c.C16A	p.L6I	.	.	.
LGALS12	85329	broad.mit.edu	36	11	63039671	63039671	+	Silent	SNP	C	T	T	rs36007310	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142536	exon7	c.C747T	p.F249F	.	.	.
RTN3	10313	broad.mit.edu	36	11	63242816	63242816	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201428	exon2	c.C209A	p.S70Y	.	.	.
RTN3	10313	broad.mit.edu	36	11	63244957	63244957	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_201428	exon2	c.C2350A	p.L784I	.	.	.
MARK2	2011	broad.mit.edu	36	11	63423990	63423990	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017490	exon8	c.C501T	p.F167F	.	.	.
MARK2	2011	broad.mit.edu	36	11	63424651	63424651	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017490	exon9	c.C714A	p.F238L	.	.	.
RCOR2	283248	broad.mit.edu	36	11	63438132	63438132	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173587	exon8	c.G761A	p.R254Q	.	.	.
RCOR2	283248	broad.mit.edu	36	11	63438525	63438525	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173587	exon6	c.G545A	p.R182Q	.	.	.
STIP1	10963	broad.mit.edu	36	11	63721600	63721600	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006819	exon7	c.G859T	p.E287X	.	.	.
NUDT22	84304	broad.mit.edu	36	11	63751681	63751681	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128612	exon3	c.C546A	p.L182L	.	.	.
APBB1	322	broad.mit.edu	36	11	6379195	6379195	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164	exon10	c.G1544T	p.G515V	.	.	.
KCNK4	50801	broad.mit.edu	36	11	63821303	63821303	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033310	exon4	c.C450T	p.I150I	.	.	.
KCNK4	50801	broad.mit.edu	36	11	63821556	63821556	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033310	exon5	c.G516A	p.A172A	.	.	.
SLC22A11	55867	broad.mit.edu	36	11	64088461	64088461	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018484	exon5	c.G927T	p.K309N	.	.	.
NRXN2	9379	broad.mit.edu	36	11	64175337	64175337	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015080	exon14	c.G2884A	p.G962S	NRXN2,skin,NS,Substitution - Missense,0	.	.
RASGRP2	10235	broad.mit.edu	36	11	64259602	64259602	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098670	exon11	c.G1284T	p.E428D	.	.	.
RASGRP2	10235	broad.mit.edu	36	11	64259628	64259628	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098670	exon11	c.C1258T	p.Q420X	.	.	.
TRIM3	10612	broad.mit.edu	36	11	6426981	6426981	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006458	exon13	c.C2088A	p.F696L	.	.	.
PYGM	5837	broad.mit.edu	36	11	64276047	64276047	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164716	exon12	c.G1429A	p.D477N	.	.	.
SF1	7536	broad.mit.edu	36	11	64293616	64293616	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201998	exon6	c.A521C	p.K174T	.	.	.
EHD1	10938	broad.mit.edu	36	11	64379505	64379505	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006795	exon4	c.G945T	p.K315N	.	.	.
PPP2R5B	5526	broad.mit.edu	36	11	64454385	64454385	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006244	exon7	c.C738T	p.F246F	.	.	.
ZFPL1	7542	broad.mit.edu	36	11	64610523	64610523	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006782	exon4	c.C275A	p.P92H	.	.	.
SYVN1	84447	broad.mit.edu	36	11	64652618	64652618	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032431	exon15	c.G1737A	p.R579R	.	.	.
SLC22A20	440044	broad.mit.edu	36	11	64746580	64746580	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004326	exon4	c.G700T	p.E234X	.	.	.
DNHD1	144132	broad.mit.edu	36	11	6480610	6480610	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144666	exon4	c.C798A	p.S266R	.	.	.
KAT5	10524	broad.mit.edu	36	11	65238608	65238608	+	Nonsense_Mutation	SNP	C	T	T	rs4645921	by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182710	exon7	c.C757T	p.R253X	.	.	.
SNX32	254122	broad.mit.edu	36	11	65376963	65376963	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152760	exon12	c.G1116T	p.K372N	.	.	.
DNHD1	144132	broad.mit.edu	36	11	6544529	6544529	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144666	exon35	c.G11343T	p.K3781N	.	.	.
DNHD1	144132	broad.mit.edu	36	11	6544933	6544933	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144666	exon36	c.T11618G	p.L3873R	.	.	.
BANF1	8815	broad.mit.edu	36	11	65527793	65527793	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001143985	exon3	c.C244T	p.R82X	.	.	.
CATSPER1	117144	broad.mit.edu	36	11	65544402	65544402	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_053054	exon8	c.A2026G	p.T676A	.	.	.
PACS1	55690	broad.mit.edu	36	11	65734424	65734424	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018026	exon3	c.C460A	p.L154I	.	.	.
KLC2	64837	broad.mit.edu	36	11	65786185	65786185	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001134775	exon4	c.G475A	p.V159I	.	.	.
SLC29A2	3177	broad.mit.edu	36	11	65893471	65893471	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001532	exon3	c.C220T	p.L74L	.	.	.
NPAS4	266743	broad.mit.edu	36	11	65947742	65947742	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178864	exon6	c.C926G	p.A309G	.	.	.
NPAS4	266743	broad.mit.edu	36	11	65948698	65948698	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178864	exon7	c.G1761A	p.T587T	.	.	.
PELI3	246330	broad.mit.edu	36	11	65997330	65997330	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145065	exon6	c.G499T	p.D167Y	.	.	.
DPP3	10072	broad.mit.edu	36	11	66016875	66016875	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005700	exon10	c.G1101T	p.K367N	.	.	.
ACTN3	89	broad.mit.edu	36	11	66086338	66086338	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001104	exon19	c.G2357A	p.R786Q	.	.	.
ACTN3	89	broad.mit.edu	36	11	66087132	66087132	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001104	exon21	c.C2598T	p.A866A	.	.	.
CTSF	8722	broad.mit.edu	36	11	66091336	66091336	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003793	exon4	c.G564T	p.K188N	.	.	.
DCHS1	8642	broad.mit.edu	36	11	6611658	6611658	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003737	exon4	c.G2156A	p.R719Q	.	.	.
CCDC87	55231	broad.mit.edu	36	11	66116705	66116705	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018219	exon1	c.G358A	p.V120M	.	.	.
RBM14	10432	broad.mit.edu	36	11	66148564	66148564	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006328	exon2	c.G641A	p.R214H	.	.	.
RBM4	5936	broad.mit.edu	36	11	66164041	66164041	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198843	exon2	c.C283T	p.R95X	.	.	.
RBM4B	83759	broad.mit.edu	36	11	66193050	66193050	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031492	exon3	c.C701T	p.A234V	.	.	.
SPTBN2	6712	broad.mit.edu	36	11	66211142	66211142	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006946	exon35	c.C6795T	p.S2265S	.	.	.
SPTBN2	6712	broad.mit.edu	36	11	66212792	66212792	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006946	exon30	c.G6139A	p.E2047K	SPTBN2,skin,NS,Substitution - Missense,0	.	.
SPTBN2	6712	broad.mit.edu	36	11	66239388	66239388	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006946	exon4	c.G364A	p.A122T	.	.	.
RCE1	9986	broad.mit.edu	36	11	66370098	66370098	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005133	exon8	c.C946A	p.L316I	.	.	.
CABP4	57010	broad.mit.edu	36	11	66982483	66982483	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145200	exon5	c.C717T	p.L239L	.	.	.
ALDH3B2	222	broad.mit.edu	36	11	67190691	67190691	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000695	exon4	c.C81T	p.V27V	.	.	.
SUV420H1	51111	broad.mit.edu	36	11	67682383	67682383	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017635	exon11	c.C2006T	p.A669V	.	.	.
SUV420H1	51111	broad.mit.edu	36	11	67695661	67695661	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016028	exon7	c.G745A	p.D249N	.	.	.
SUV420H1	51111	broad.mit.edu	36	11	67714073	67714073	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016028	exon2	c.G47T	p.R16I	.	.	.
OR6A2	8590	broad.mit.edu	36	11	6772628	6772628	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003696	exon1	c.C888T	p.C296C	.	.	.
DEAF1	10522	broad.mit.edu	36	11	678019	678019	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021008	exon4	c.G556T	p.E186X	.	.	.
PPP6R3	55291	broad.mit.edu	36	11	68125918	68125918	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164164	exon20	c.C1964A	p.S655Y	.	.	.
CPT1A	1374	broad.mit.edu	36	11	68283668	68283668	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031847	exon18	c.T2180C	p.V727A	.	.	.
OR10A2	341276	broad.mit.edu	36	11	6847938	6847938	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004460	exon1	c.G377T	p.R126M	.	.	.
OR10A2	341276	broad.mit.edu	36	11	6848416	6848416	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004460	exon1	c.G855T	p.K285N	.	.	.
MRGPRD	116512	broad.mit.edu	36	11	68504850	68504850	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198923	exon1	c.T182G	p.F61C	.	.	.
OR10A4	283297	broad.mit.edu	36	11	6855340	6855340	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207186	exon1	c.A886G	p.K296E	.	.	.
OR2D3	120775	broad.mit.edu	36	11	6898866	6898866	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004684	exon1	c.G58T	p.E20X	.	.	.
OR2D3	120775	broad.mit.edu	36	11	6898928	6898928	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004684	exon1	c.G120A	p.Q40Q	.	.	.
FGF19	9965	broad.mit.edu	36	11	69223298	69223298	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005117	exon3	c.C564A	p.F188L	.	.	.
PPFIA1	8500	broad.mit.edu	36	11	69850355	69850355	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003626	exon7	c.C713A	p.S238Y	.	.	.
PPFIA1	8500	broad.mit.edu	36	11	69901933	69901933	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003626	exon26	c.G3534T	p.K1178N	.	.	.
CTTN	2017	broad.mit.edu	36	11	69943516	69943516	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005231	exon9	c.C585T	p.F195F	.	.	.
CTTN	2017	broad.mit.edu	36	11	69957422	69957422	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005231	exon17	c.A1466G	p.Y489C	.	.	.
NLRP14	338323	broad.mit.edu	36	11	7020309	7020309	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176822	exon4	c.G476T	p.R159I	.	.	.
NLRP14	338323	broad.mit.edu	36	11	7021397	7021397	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_176822	exon4	c.G1564T	p.D522Y	.	.	.
NLRP14	338323	broad.mit.edu	36	11	7024545	7024545	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176822	exon5	c.G2029T	p.E677X	.	.	.
NLRP14	338323	broad.mit.edu	36	11	7035632	7035632	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176822	exon7	c.A2440C	p.K814Q	.	.	.
NLRP14	338323	broad.mit.edu	36	11	7036131	7036131	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176822	exon8	c.C2507A	p.S836Y	.	.	.
NLRP14	338323	broad.mit.edu	36	11	7037836	7037836	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176822	exon9	c.C2769A	p.V923V	.	.	.
RBMXL2	27288	broad.mit.edu	36	11	7066979	7066979	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014469	exon1	c.G52A	p.E18K	.	.	.
IL18BP	10068	broad.mit.edu	36	11	71389946	71389946	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039660	exon4	c.G287T	p.S96I	.	.	.
NUMA1	4926	broad.mit.edu	36	11	71393443	71393443	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006185	exon24	c.G5897A	p.R1966H	.	.	.
NUMA1	4926	broad.mit.edu	36	11	71406454	71406454	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006185	exon13	c.G1046T	p.S349I	.	.	.
FOLR2	2350	broad.mit.edu	36	11	71610346	71610346	+	Silent	SNP	G	A	A	rs1803567	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001113536	exon5	c.G660A	p.A220A	.	.	.
FCHSD2	9873	broad.mit.edu	36	11	72231442	72231442	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014824	exon17	c.G1798T	p.E600X	.	.	.
FCHSD2	9873	broad.mit.edu	36	11	72238488	72238488	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014824	exon14	c.G1403T	p.R468I	.	.	.
FCHSD2	9873	broad.mit.edu	36	11	72256713	72256713	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014824	exon13	c.A1153C	p.K385Q	.	.	.
FCHSD2	9873	broad.mit.edu	36	11	72377665	72377665	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014824	exon6	c.C513T	p.I171I	.	.	.
ARHGEF17	9828	broad.mit.edu	36	11	72698262	72698262	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014786	exon1	c.G931A	p.D311N	.	.	.
SYT9	143425	broad.mit.edu	36	11	7291341	7291341	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175733	exon3	c.G637A	p.G213R	.	.	.
SYT9	143425	broad.mit.edu	36	11	7291490	7291490	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175733	exon3	c.C786A	p.I262I	.	.	.
SYT9	143425	broad.mit.edu	36	11	7291551	7291551	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175733	exon3	c.C847A	p.P283T	.	.	.
PLEKHB1	58473	broad.mit.edu	36	11	73050268	73050268	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021200	exon8	c.G705A	p.S235S	.	.	.
C2CD3	26005	broad.mit.edu	36	11	73430770	73430770	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015531	exon29	c.A5637C	p.Q1879H	.	.	.
C2CD3	26005	broad.mit.edu	36	11	73467118	73467118	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015531	exon23	c.G4293T	p.K1431N	.	.	.
C2CD3	26005	broad.mit.edu	36	11	73467184	73467184	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015531	exon23	c.C4227T	p.I1409I	.	.	.
C2CD3	26005	broad.mit.edu	36	11	73506927	73506927	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015531	exon9	c.G1514T	p.R505I	.	.	.
P4HA3	283208	broad.mit.edu	36	11	73693077	73693077	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182904	exon2	c.G229T	p.E77X	.	.	.
PGM2L1	283209	broad.mit.edu	36	11	73725425	73725425	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173582	exon14	c.G1789T	p.E597X	.	.	.
PGM2L1	283209	broad.mit.edu	36	11	73734204	73734204	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173582	exon9	c.A1176C	p.K392N	.	.	.
SYT9	143425	broad.mit.edu	36	11	7395928	7395928	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175733	exon5	c.T1330G	p.Y444D	.	.	.
POLD3	10714	broad.mit.edu	36	11	74007470	74007470	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006591	exon6	c.G633A	p.T211T	.	.	.
CHRDL2	25884	broad.mit.edu	36	11	74107437	74107437	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015424	exon2	c.C171A	p.Y57X	.	.	.
RNF169	254225	broad.mit.edu	36	11	74224425	74224425	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098638	exon6	c.G1129A	p.E377K	.	.	.
XRRA1	143570	broad.mit.edu	36	11	74247951	74247951	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182969	exon12	c.C1046A	p.P349H	.	.	.
XRRA1	143570	broad.mit.edu	36	11	74295902	74295902	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182969	exon9	c.C697T	p.L233L	.	.	.
SLCO2B1	11309	broad.mit.edu	36	11	74558424	74558424	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145212	exon3	c.C316T	p.R106C	.	.	.
MAP6	4135	broad.mit.edu	36	11	74976111	74976111	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033063	exon4	c.G2083A	p.D695N	.	.	.
DGAT2	84649	broad.mit.edu	36	11	75189156	75189156	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032564	exon8	c.G1122T	p.K374N	.	.	.
UVRAG	7405	broad.mit.edu	36	11	75268592	75268592	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003369	exon4	c.G292A	p.D98N	.	.	.
C11orf30	56946	broad.mit.edu	36	11	75840630	75840630	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020193	exon3	c.G151T	p.E51X	.	.	.
PPFIBP2	8495	broad.mit.edu	36	11	7588209	7588209	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003621	exon6	c.G598T	p.E200X	.	.	.
TSKU	25987	broad.mit.edu	36	11	76184983	76184983	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015516	exon2	c.C675T	p.F225F	.	.	.
PPFIBP2	8495	broad.mit.edu	36	11	7629472	7629472	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003621	exon23	c.C2257T	p.P753S	.	.	.
CYB5R2	51700	broad.mit.edu	36	11	7647048	7647048	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016229	exon5	c.C352T	p.R118X	.	.	.
OVCH2	341277	broad.mit.edu	36	11	7673447	7673447	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198185	exon12	c.C1212A	p.V404V	.	.	.
OVCH2	341277	broad.mit.edu	36	11	7681908	7681908	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198185	exon3	c.C203A	p.S68Y	.	.	.
RSF1	51773	broad.mit.edu	36	11	77056122	77056122	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016578	exon16	c.C3814T	p.R1272X	.	.	.
RSF1	51773	broad.mit.edu	36	11	77065558	77065558	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016578	exon13	c.C3268T	p.R1090X	.	.	.
RSF1	51773	broad.mit.edu	36	11	77089610	77089610	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016578	exon6	c.T2312C	p.V771A	.	.	.
INTS4	92105	broad.mit.edu	36	11	77327476	77327476	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033547	exon10	c.C1034T	p.S345L	.	.	.
ALG8	79053	broad.mit.edu	36	11	77489722	77489722	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024079	exon13	c.C1517A	p.A506D	.	.	.
ALG8	79053	broad.mit.edu	36	11	77493114	77493114	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007027	exon11	c.G1212T	p.S404S	.	.	.
KCTD21	283219	broad.mit.edu	36	11	77562486	77562486	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001029859	exon2	c.C763T	p.R255X	.	.	.
KCTD21	283219	broad.mit.edu	36	11	77563093	77563093	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001029859	exon2	c.C156T	p.D52D	.	.	.
USP35	57558	broad.mit.edu	36	11	77589394	77589394	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020798	exon6	c.G1089A	p.S363S	.	.	.
USP35	57558	broad.mit.edu	36	11	77598722	77598722	+	Nonsense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020798	exon10	c.A2173T	p.K725X	.	.	.
NARS2	79731	broad.mit.edu	36	11	77954864	77954864	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024678	exon4	c.C475T	p.R159C	.	.	.
NARS2	79731	broad.mit.edu	36	11	77963140	77963140	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024678	exon1	c.T42C	p.C14C	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78057931	78057931	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098816	exon32	c.C7107A	p.V2369V	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78058717	78058717	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098816	exon32	c.C6321A	p.L2107L	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78059197	78059197	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098816	exon32	c.C5841T	p.F1947F	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78111516	78111516	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098816	exon24	c.C3645A	p.I1215I	.	.	.
OR10A6	390093	broad.mit.edu	36	11	7906046	7906046	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004461	exon1	c.C740A	p.S247Y	.	.	.
OR10A6	390093	broad.mit.edu	36	11	7906128	7906128	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004461	exon1	c.C658T	p.R220X	.	.	.
OR10A6	390093	broad.mit.edu	36	11	7906454	7906454	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004461	exon1	c.A332C	p.E111A	.	.	.
OR10A3	26496	broad.mit.edu	36	11	7917331	7917331	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001003745	exon1	c.C313A	p.L105I	.	.	.
NLRP10	338322	broad.mit.edu	36	11	7938074	7938074	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176821	exon2	c.C1661A	p.S554Y	.	.	.
NLRP10	338322	broad.mit.edu	36	11	7938145	7938145	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176821	exon2	c.G1590A	p.E530E	.	.	.
NLRP10	338322	broad.mit.edu	36	11	7939122	7939122	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176821	exon2	c.T613C	p.Y205H	.	.	.
EIF3F	8665	broad.mit.edu	36	11	7965711	7965711	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003754	exon1	c.G236A	p.G79D	.	.	.
EIF3F	8665	broad.mit.edu	36	11	7969941	7969941	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003754	exon2	c.C402A	p.C134X	.	.	.
TUB	7275	broad.mit.edu	36	11	8017150	8017150	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003320	exon1	c.C154T	p.R52W	.	.	.
C11orf82	220042	broad.mit.edu	36	11	82321044	82321044	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145018	exon6	c.T1016G	p.L339X	.	.	.
RAB30	27314	broad.mit.edu	36	11	82385994	82385994	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014488	exon3	c.G13T	p.D5Y	.	.	.
DLG2	1740	broad.mit.edu	36	11	83319134	83319134	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001364	exon10	c.G1066A	p.D356N	.	.	.
SYTL2	54843	broad.mit.edu	36	11	85086746	85086746	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206929	exon10	c.G703T	p.E235X	.	.	.
SYTL2	54843	broad.mit.edu	36	11	85114770	85114770	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206927	exon1	c.G378T	p.K126N	.	.	.
SYTL2	54843	broad.mit.edu	36	11	85137075	85137075	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032943	exon3	c.G141T	p.K47N	.	.	.
SYTL2	54843	broad.mit.edu	36	11	85146332	85146332	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032943	exon2	c.G85A	p.E29K	.	.	.
CCDC83	220047	broad.mit.edu	36	11	85284014	85284014	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173556	exon6	c.G542T	p.R181I	.	.	.
CCDC83	220047	broad.mit.edu	36	11	85299999	85299999	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173556	exon8	c.G700T	p.E234X	.	.	.
CCDC83	220047	broad.mit.edu	36	11	85304760	85304760	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173556	exon11	c.G1009A	p.D337N	.	.	.
CCDC81	60494	broad.mit.edu	36	11	85789386	85789386	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021827	exon6	c.G506T	p.R169I	.	.	.
FZD4	8322	broad.mit.edu	36	11	86340712	86340712	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012193	exon2	c.C734A	p.S245Y	.	.	.
TMEM135	65084	broad.mit.edu	36	11	86460292	86460292	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001168724	exon3	c.G349T	p.E117X	.	.	.
CTSC	1075	broad.mit.edu	36	11	87685229	87685229	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001814	exon3	c.G460A	p.A154T	.	.	.
GRM5	2915	broad.mit.edu	36	11	87977641	87977641	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000842	exon5	c.G1287T	p.M429I	.	.	.
NOX4	50507	broad.mit.edu	36	11	88775255	88775255	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016931	exon9	c.G733T	p.E245X	.	.	.
NOX4	50507	broad.mit.edu	36	11	88813524	88813524	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016931	exon6	c.G455T	p.R152I	.	.	.
C11orf17	56672	broad.mit.edu	36	11	8892985	8892985	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020642	exon4	c.A340G	p.T114A	.	.	.
C11orf16	56673	broad.mit.edu	36	11	8899439	8899439	+	Nonstop_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020643	exon6	c.G1404T	p.X468Y	.	.	.
ASCL3	56676	broad.mit.edu	36	11	8915972	8915972	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020646	exon2	c.C313T	p.R105W	.	.	.
TRIM49	57093	broad.mit.edu	36	11	89177086	89177086	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020358	exon3	c.A200G	p.N67S	.	.	.
SCUBE2	57758	broad.mit.edu	36	11	9005542	9005542	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020974	exon19	c.G2475T	p.E825D	.	.	.
SCUBE2	57758	broad.mit.edu	36	11	9057560	9057560	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020974	exon3	c.G329A	p.R110H	.	.	.
FAT3	120114	broad.mit.edu	36	11	91724980	91724980	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008781	exon1	c.C54A	p.L18L	.	.	.
FAT3	120114	broad.mit.edu	36	11	91726050	91726050	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008781	exon1	c.G1124T	p.R375I	.	.	.
FAT3	120114	broad.mit.edu	36	11	91726625	91726625	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008781	exon1	c.C1699T	p.R567X	.	.	.
FAT3	120114	broad.mit.edu	36	11	91726779	91726779	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008781	exon1	c.G1853A	p.G618E	.	.	.
FAT3	120114	broad.mit.edu	36	11	92137794	92137794	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008781	exon5	c.C4086T	p.F1362F	.	.	.
FAT3	120114	broad.mit.edu	36	11	92146939	92146939	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008781	exon6	c.C4280T	p.S1427F	.	.	.
FAT3	120114	broad.mit.edu	36	11	92170709	92170709	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008781	exon9	c.G4882T	p.E1628X	.	.	.
FAT3	120114	broad.mit.edu	36	11	92172267	92172267	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008781	exon9	c.C6440T	p.S2147F	.	.	.
FAT3	120114	broad.mit.edu	36	11	92263492	92263492	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008781	exon25	c.C13239A	p.F4413L	.	.	.
SLC36A4	120103	broad.mit.edu	36	11	92521543	92521543	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152313	exon11	c.G1323A	p.S441S	.	.	.
TMEM41B	440026	broad.mit.edu	36	11	9264581	9264581	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015012	exon6	c.C703A	p.L235I	.	.	.
HEPHL1	341208	broad.mit.edu	36	11	93440363	93440363	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098672	exon5	c.G862T	p.E288X	.	.	.
HEPHL1	341208	broad.mit.edu	36	11	93455346	93455346	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098672	exon10	c.G1831T	p.E611X	.	.	.
HEPHL1	341208	broad.mit.edu	36	11	93466333	93466333	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098672	exon13	c.G2313A	p.M771I	.	.	.
HEPHL1	341208	broad.mit.edu	36	11	93483733	93483733	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098672	exon18	c.G3062A	p.R1021Q	.	.	.
MRE11A	4361	broad.mit.edu	36	11	93792972	93792972	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005591	exon20	c.G2094T	p.M698I	.	.	.
MRE11A	4361	broad.mit.edu	36	11	93810013	93810013	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005591	exon17	c.T1904C	p.V635A	.	.	.
MRE11A	4361	broad.mit.edu	36	11	93829148	93829148	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005591	exon14	c.G1505A	p.R502H	.	.	.
MRE11A	4361	broad.mit.edu	36	11	93863742	93863742	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005591	exon3	c.G58T	p.D20Y	.	.	.
ANKRD49	54851	broad.mit.edu	36	11	93871273	93871273	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017704	exon3	c.C647G	p.A216G	.	.	.
PIWIL4	143689	broad.mit.edu	36	11	93970673	93970673	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152431	exon11	c.A1324G	p.I442V	.	.	.
IPO7	10527	broad.mit.edu	36	11	9416233	9416233	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006391	exon22	c.A2520G	p.G840G	.	.	.
AMOTL1	154810	broad.mit.edu	36	11	94172690	94172690	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130847	exon3	c.G686A	p.R229Q	.	.	.
AMOTL1	154810	broad.mit.edu	36	11	94242274	94242274	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130847	exon12	c.G2752A	p.A918T	.	.	.
ZNF143	7702	broad.mit.edu	36	11	9494332	9494332	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003442	exon14	c.A1533G	p.I511M	.	.	.
CEP57	9702	broad.mit.edu	36	11	95202126	95202126	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014679	exon10	c.C1255T	p.R419X	.	.	.
MTMR2	8898	broad.mit.edu	36	11	95217775	95217775	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201278	exon13	c.G1160A	p.R387Q	.	.	.
CCDC82	79780	broad.mit.edu	36	11	95757477	95757477	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024725	exon4	c.G83A	p.R28Q	.	.	.
JRKL	8690	broad.mit.edu	36	11	95764678	95764678	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003772	exon1	c.C1217A	p.S406Y	.	.	.
AP2A2	161	broad.mit.edu	36	11	975550	975550	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012305	exon8	c.C930T	p.F310F	.	.	.
SBF2	81846	broad.mit.edu	36	11	9763300	9763300	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030962	exon37	c.C5179T	p.R1727X	.	.	.
SBF2	81846	broad.mit.edu	36	11	9810473	9810473	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030962	exon27	c.C3526T	p.R1176X	.	.	.
CNTN5	53942	broad.mit.edu	36	11	99332902	99332902	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175566	exon7	c.G606A	p.T202T	.	.	.
SLC35F1	222553	broad.mit.edu	36	6	118713072	118713072	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029858	exon7	c.880delT	p.F294fs	.	.	.
USP45	85015	broad.mit.edu	36	6	100001043	100001043	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080481	exon14	c.C1326T	p.D442D	.	.	.
MCHR2	84539	broad.mit.edu	36	6	100510613	100510613	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040179	exon2	c.C132A	p.I44I	.	.	.
MCHR2	84539	broad.mit.edu	36	6	100510705	100510705	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040179	exon2	c.G40A	p.E14K	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101321169	101321169	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006828	exon10	c.G1730A	p.R577Q	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101355086	101355086	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006828	exon6	c.T938A	p.I313N	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101403213	101403213	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006828	exon4	c.A333C	p.E111D	.	.	.
GRIK2	2898	broad.mit.edu	36	6	102180994	102180994	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021956	exon3	c.A330G	p.S110S	.	.	.
HACE1	57531	broad.mit.edu	36	6	105339858	105339858	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020771	exon12	c.T1104C	p.D368D	.	.	.
HACE1	57531	broad.mit.edu	36	6	105365886	105365886	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020771	exon7	c.G610A	p.A204T	.	.	.
HACE1	57531	broad.mit.edu	36	6	105397860	105397860	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020771	exon5	c.G333T	p.K111N	.	.	.
LIN28B	389421	broad.mit.edu	36	6	105633322	105633322	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004317	exon4	c.C724T	p.P242S	.	.	.
BVES	11149	broad.mit.edu	36	6	105671402	105671402	+	Nonsense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007073	exon6	c.T683G	p.L228X	.	.	.
PREP	5550	broad.mit.edu	36	6	105840065	105840065	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002726	exon12	c.C1538T	p.T513M	.	.	.
GCNT2	2651	broad.mit.edu	36	6	10637368	10637368	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145649	exon3	c.C238T	p.R80X	.	.	.
GCNT2	2651	broad.mit.edu	36	6	10637958	10637958	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145649	exon3	c.C828T	p.F276F	.	.	.
GCNT2	2651	broad.mit.edu	36	6	10664708	10664708	+	Intron	SNP	C	T	T	rs56108949	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001491	exon1	c.C66T	p.F22F	.	.	.
PRDM1	639	broad.mit.edu	36	6	106661878	106661878	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001198	exon7	c.G2302T	p.E768X	.	.	.
ATG5	9474	broad.mit.edu	36	6	106834277	106834277	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004849	exon5	c.G430T	p.E144X	.	.	.
GCNT2	2651	broad.mit.edu	36	6	10694681	10694681	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145655	exon1	c.C473A	p.S158Y	.	.	.
AIM1	202	broad.mit.edu	36	6	107073871	107073871	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001624	exon2	c.C871T	p.R291X	.	.	.
AIM1	202	broad.mit.edu	36	6	107075221	107075221	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001624	exon2	c.G2221T	p.E741X	.	.	.
RTN4IP1	84816	broad.mit.edu	36	6	107126645	107126645	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032730	exon9	c.T1110C	p.F370F	.	.	.
QRSL1	55278	broad.mit.edu	36	6	107220484	107220484	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018292	exon11	c.C1501T	p.P501S	.	.	.
PDSS2	57107	broad.mit.edu	36	6	107582660	107582660	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020381	exon8	c.C1056A	p.I352I	.	.	.
SCML4	256380	broad.mit.edu	36	6	108172947	108172947	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198081	exon5	c.G581A	p.R194Q	.	.	.
SNX3	8724	broad.mit.edu	36	6	108642425	108642425	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152827	exon2	c.G257T	p.R86I	.	.	.
LACE1	246269	broad.mit.edu	36	6	108829945	108829945	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145315	exon7	c.C801A	p.V267V	.	.	.
MAK	4117	broad.mit.edu	36	6	10899903	10899903	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005906	exon9	c.C1307A	p.S436Y	.	.	.
ARMC2	84071	broad.mit.edu	36	6	109327637	109327637	+	Missense_Mutation	SNP	G	A	A	rs6911885	by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032131	exon7	c.G796A	p.E266K	.	.	.
ARMC2	84071	broad.mit.edu	36	6	109338867	109338867	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032131	exon9	c.G1096T	p.D366Y	.	.	.
ARMC2	84071	broad.mit.edu	36	6	109401358	109401358	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032131	exon18	c.G2552A	p.R851Q	.	.	.
GCM2	9247	broad.mit.edu	36	6	10982307	10982307	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004752	exon5	c.G1428T	p.E476D	.	.	.
GCM2	9247	broad.mit.edu	36	6	10984718	10984718	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004752	exon3	c.C402T	p.S134S	.	.	.
PPIL6	285755	broad.mit.edu	36	6	109859198	109859198	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001111298	exon3	c.C275A	p.S92Y	.	.	.
ZBTB24	9841	broad.mit.edu	36	6	109895550	109895550	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014797	exon6	c.C1369T	p.R457X	.	.	.
AKD1	221264	broad.mit.edu	36	6	110069499	110069499	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145128	exon10	c.G848A	p.R283Q	.	.	.
AKD1	221264	broad.mit.edu	36	6	110103610	110103610	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145128	exon2	c.C32A	p.P11H	.	.	.
SYCP2L	221711	broad.mit.edu	36	6	11020934	11020934	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040274	exon13	c.G961A	p.D321N	.	.	.
GPR6	2830	broad.mit.edu	36	6	110408070	110408070	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005284	exon1	c.T1062G	p.F354L	.	.	.
WASF1	8936	broad.mit.edu	36	6	110536509	110536509	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001024934	exon5	c.G337A	p.D113N	.	.	.
SYCP2L	221711	broad.mit.edu	36	6	11064414	11064414	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040274	exon25	c.C2116A	p.L706I	.	.	.
SLC22A16	85413	broad.mit.edu	36	6	110870239	110870239	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033125	exon4	c.G1084A	p.V362I	.	.	.
CDK19	23097	broad.mit.edu	36	6	111054928	111054928	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015076	exon7	c.C760T	p.R254W	.	.	.
CDK19	23097	broad.mit.edu	36	6	111054999	111054999	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015076	exon7	c.C689T	p.S230L	.	.	.
AMD1	262	broad.mit.edu	36	6	111316844	111316844	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001634	exon3	c.C289A	p.L97I	.	.	.
RPF2	84154	broad.mit.edu	36	6	111412950	111412950	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032194	exon2	c.G72A	p.P24P	.	.	.
REV3L	5980	broad.mit.edu	36	6	111779588	111779588	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002912	exon19	c.G7284T	p.M2428I	.	.	.
REV3L	5980	broad.mit.edu	36	6	111795234	111795234	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002912	exon14	c.G6450T	p.E2150D	.	.	.
REV3L	5980	broad.mit.edu	36	6	111800586	111800586	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002912	exon13	c.G5665T	p.E1889X	.	.	.
REV3L	5980	broad.mit.edu	36	6	111801717	111801717	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002912	exon13	c.C4534T	p.R1512X	.	.	.
REV3L	5980	broad.mit.edu	36	6	111802670	111802670	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002912	exon13	c.G3581A	p.R1194Q	.	.	.
REV3L	5980	broad.mit.edu	36	6	111804376	111804376	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002912	exon13	c.G1875T	p.M625I	.	.	.
REV3L	5980	broad.mit.edu	36	6	111809299	111809299	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002912	exon10	c.G1138T	p.E380X	.	.	.
REV3L	5980	broad.mit.edu	36	6	111815904	111815904	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002912	exon8	c.T940G	p.F314V	.	.	.
TRAF3IP2	10758	broad.mit.edu	36	6	112019808	112019808	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_147686	exon2	c.G175T	p.D59Y	.	.	.
ERVFRDE1	405754	broad.mit.edu	36	6	11213301	11213301	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207582	exon2	c.C229T	p.R77X	.	.	.
FYN	2534	broad.mit.edu	36	6	112147792	112147792	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002037	exon4	c.C156A	p.N52K	.	.	.
WISP3	8838	broad.mit.edu	36	6	112497467	112497467	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198239	exon5	c.G1070T	p.R357I	.	.	.
TUBE1	51175	broad.mit.edu	36	6	112500745	112500745	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016262	exon10	c.C1003T	p.R335W	.	.	.
TUBE1	51175	broad.mit.edu	36	6	112503930	112503930	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016262	exon8	c.C715A	p.L239M	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112564058	112564058	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001105207	exon25	c.C3353T	p.T1118M	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112586771	112586771	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001105207	exon14	c.C1652T	p.A551V	.	.	.
RFPL4B	442247	broad.mit.edu	36	6	112778158	112778158	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001013734	exon3	c.G555T	p.K185N	.	.	.
NEDD9	4739	broad.mit.edu	36	6	11321892	11321892	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006403	exon2	c.G67A	p.A23T	.	.	.
HS3ST5	222537	broad.mit.edu	36	6	114485255	114485255	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153612	exon2	c.C900T	p.I300I	.	.	.
HS3ST5	222537	broad.mit.edu	36	6	114485399	114485399	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153612	exon2	c.C756A	p.V252V	.	.	.
TSPYL1	7259	broad.mit.edu	36	6	116706768	116706768	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003309	exon1	c.T919G	p.L307V	.	.	.
TMEM170B	100113407	broad.mit.edu	36	6	11673886	11673886	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100829	exon2	c.G99T	p.E33D	.	.	.
DSE	29940	broad.mit.edu	36	6	116827181	116827181	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080976	exon2	c.C75T	p.T25T	.	.	.
TMEM170B	100113407	broad.mit.edu	36	6	11683703	11683703	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100829	exon3	c.G322A	p.E108K	.	.	.
DSE	29940	broad.mit.edu	36	6	116854564	116854564	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080976	exon3	c.C551A	p.A184D	.	.	.
FAM26F	441168	broad.mit.edu	36	6	116891344	116891344	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010919	exon3	c.C731T	p.S244L	.	.	.
RWDD1	51389	broad.mit.edu	36	6	116999508	116999508	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015952	exon1	c.A70G	p.T24A	.	.	.
RSPH4A	345895	broad.mit.edu	36	6	117044815	117044815	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001161664	exon1	c.G336T	p.R112S	.	.	.
RSPH4A	345895	broad.mit.edu	36	6	117056064	117056064	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001161664	exon3	c.G1501T	p.G501X	.	.	.
KPNA5	3841	broad.mit.edu	36	6	117129958	117129958	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002269	exon6	c.G519A	p.P173P	.	.	.
GPRC6A	222545	broad.mit.edu	36	6	117237231	117237231	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_148963	exon2	c.C437A	p.S146Y	.	.	.
GPRC6A	222545	broad.mit.edu	36	6	117256827	117256827	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_148963	exon1	c.C43A	p.L15I	.	.	.
RFX6	222546	broad.mit.edu	36	6	117338808	117338808	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173560	exon7	c.A690C	p.K230N	.	.	.
RFX6	222546	broad.mit.edu	36	6	117356813	117356813	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173560	exon18	c.G2597A	p.R866Q	.	.	.
ROS1	6098	broad.mit.edu	36	6	117736668	117736668	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002944	exon41	c.G6551T	p.R2184I	.	.	.
ROS1	6098	broad.mit.edu	36	6	117765091	117765091	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002944	exon31	c.G5185T	p.V1729L	.	.	.
ROS1	6098	broad.mit.edu	36	6	117770270	117770270	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002944	exon28	c.A4655C	p.K1552T	.	.	.
ROS1	6098	broad.mit.edu	36	6	117787824	117787824	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002944	exon23	c.G3489T	p.K1163N	.	.	.
GOPC	57120	broad.mit.edu	36	6	118003115	118003115	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020399	exon4	c.C568T	p.R190C	.	.	.
C6orf105	84830	broad.mit.edu	36	6	11843828	11843828	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143948	exon5	c.A519G	p.G173G	.	.	.
SLC35F1	222553	broad.mit.edu	36	6	118582318	118582318	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001029858	exon2	c.T191C	p.V64A	.	.	.
SLC35F1	222553	broad.mit.edu	36	6	118703401	118703401	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001029858	exon5	c.C724T	p.R242X	.	.	.
PLN	5350	broad.mit.edu	36	6	118986901	118986901	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002667	exon2	c.C124T	p.L42F	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119337912	119337912	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024581	exon13	c.G2744A	p.R915Q	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119343100	119343100	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024581	exon10	c.G2203T	p.E735X	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119365801	119365801	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024581	exon9	c.G2050T	p.D684Y	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119379789	119379789	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024581	exon5	c.G1352A	p.R451K	.	.	.
MAN1A1	4121	broad.mit.edu	36	6	119552534	119552534	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005907	exon10	c.C1540T	p.R514X	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121453718	121453718	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152730	exon31	c.G3634T	p.D1212Y	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121468977	121468977	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152730	exon30	c.G3356A	p.G1119D	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121618184	121618184	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152730	exon17	c.A2007G	p.E669E	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121619128	121619128	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152730	exon16	c.C1736A	p.P579H	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121666516	121666516	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152730	exon9	c.G1026A	p.P342P	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121684496	121684496	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152730	exon2	c.G299T	p.R100I	.	.	.
GJA1	2697	broad.mit.edu	36	6	121809994	121809994	+	Missense_Mutation	SNP	G	A	A	rs2227875	by-frequency	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000165	exon2	c.G302A	p.R101Q	.	.	.
GJA1	2697	broad.mit.edu	36	6	121810239	121810239	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000165	exon2	c.G547A	p.A183T	.	.	.
GJA1	2697	broad.mit.edu	36	6	121810367	121810367	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000165	exon2	c.C675A	p.I225I	.	.	.
GJA1	2697	broad.mit.edu	36	6	121810710	121810710	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000165	exon2	c.G1018T	p.D340Y	.	.	.
HIVEP1	3096	broad.mit.edu	36	6	12229636	12229636	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002114	exon4	c.T1622C	p.V541A	.	.	.
HIVEP1	3096	broad.mit.edu	36	6	12230751	12230751	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002114	exon4	c.C2737A	p.L913I	.	.	.
HIVEP1	3096	broad.mit.edu	36	6	12232849	12232849	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002114	exon4	c.C4835T	p.S1612L	.	.	.
HIVEP1	3096	broad.mit.edu	36	6	12269699	12269699	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002114	exon8	c.C6529T	p.L2177F	.	.	.
SERINC1	57515	broad.mit.edu	36	6	122816630	122816630	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020755	exon5	c.G573A	p.S191S	.	.	.
SMPDL3A	10924	broad.mit.edu	36	6	123167828	123167828	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006714	exon6	c.A814C	p.N272H	.	.	.
CLVS2	134829	broad.mit.edu	36	6	123374003	123374003	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010852	exon3	c.G564T	p.Q188H	.	.	.
TRDN	10345	broad.mit.edu	36	6	123581473	123581473	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006073	exon41	c.C2162A	p.S721Y	.	.	.
HEY2	23493	broad.mit.edu	36	6	126122096	126122096	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012259	exon5	c.C469A	p.L157I	.	.	.
NCOA7	135112	broad.mit.edu	36	6	126251859	126251859	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199620	exon11	c.C966A	p.F322L	.	.	.
NCOA7	135112	broad.mit.edu	36	6	126252677	126252677	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199620	exon11	c.C1784A	p.S595Y	.	.	.
HINT3	135114	broad.mit.edu	36	6	126337791	126337791	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138571	exon4	c.C495A	p.V165V	.	.	.
TRMT11	60487	broad.mit.edu	36	6	126374246	126374246	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031712	exon9	c.C915A	p.I305I	.	.	.
CENPW	387103	broad.mit.edu	36	6	126709109	126709109	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001012507	exon2	c.G192A	p.A64A	.	.	.
KIAA0408	9729	broad.mit.edu	36	6	127809817	127809817	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014702	exon5	c.G1340A	p.R447K	.	.	.
KIAA0408	9729	broad.mit.edu	36	6	127809908	127809908	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014702	exon5	c.G1249A	p.E417K	.	.	.
KIAA0408	9729	broad.mit.edu	36	6	127812682	127812682	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014702	exon4	c.C556T	p.R186X	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127838773	127838773	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012279	exon6	c.G2091T	p.K697N	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127877835	127877835	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012279	exon3	c.C1152A	p.F384L	.	.	.
THEMIS	387357	broad.mit.edu	36	6	128192318	128192318	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010923	exon3	c.G705T	p.M235I	.	.	.
THEMIS	387357	broad.mit.edu	36	6	128192484	128192484	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010923	exon3	c.G539A	p.R180H	.	.	.
THEMIS	387357	broad.mit.edu	36	6	128217979	128217979	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010923	exon2	c.G139T	p.E47X	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129754392	129754392	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001079823	exon36	c.G5135T	p.R1712I	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129854843	129854843	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001079823	exon56	c.A7991C	p.E2664A	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129866097	129866097	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001079823	exon59	c.C8514A	p.I2838I	.	.	.
ARHGAP18	93663	broad.mit.edu	36	6	130004782	130004782	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033515	exon2	c.G188A	p.R63Q	.	.	.
TMEM200A	114801	broad.mit.edu	36	6	130804321	130804321	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052913	exon2	c.C1061T	p.S354L	.	.	.
ARG1	383	broad.mit.edu	36	6	131936127	131936127	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000045	exon1	c.G12A	p.K4K	.	.	.
MED23	9439	broad.mit.edu	36	6	131955233	131955233	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015979	exon26	c.C3477A	p.I1159I	.	.	.
MED23	9439	broad.mit.edu	36	6	131957052	131957052	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015979	exon24	c.C3130T	p.R1044X	.	.	.
MED23	9439	broad.mit.edu	36	6	131959363	131959363	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015979	exon22	c.G2784T	p.M928I	.	.	.
MED23	9439	broad.mit.edu	36	6	131981319	131981319	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015979	exon9	c.C701T	p.S234L	.	.	.
ENPP3	5169	broad.mit.edu	36	6	132037938	132037938	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005021	exon9	c.G788A	p.G263D	.	.	.
ENPP1	5167	broad.mit.edu	36	6	132221580	132221580	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006208	exon7	c.C795T	p.T265T	.	.	.
MOXD1	26002	broad.mit.edu	36	6	132660048	132660048	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015529	exon12	c.C1779A	p.F593L	.	.	.
MOXD1	26002	broad.mit.edu	36	6	132660620	132660620	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015529	exon11	c.C1676T	p.S559L	.	.	.
MOXD1	26002	broad.mit.edu	36	6	132683496	132683496	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015529	exon9	c.C1330T	p.R444C	.	.	.
MOXD1	26002	broad.mit.edu	36	6	132737593	132737593	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015529	exon2	c.C281T	p.A94V	.	.	.
TAAR9	134860	broad.mit.edu	36	6	132902003	132902003	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175057	exon1	c.G882T	p.E294D	.	.	.
TAAR9	134860	broad.mit.edu	36	6	132902146	132902146	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175057	exon1	c.C1025A	p.S342Y	.	.	.
TAAR8	83551	broad.mit.edu	36	6	132916456	132916456	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_053278	exon1	c.C932T	p.A311V	.	.	.
TAAR6	319100	broad.mit.edu	36	6	132933390	132933390	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175067	exon1	c.C237A	p.F79L	.	.	.
TAAR6	319100	broad.mit.edu	36	6	132933843	132933843	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175067	exon1	c.G690T	p.K230N	.	.	.
TAAR1	134864	broad.mit.edu	36	6	133008801	133008801	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138327	exon1	c.C35T	p.S12F	.	.	.
VNN1	8876	broad.mit.edu	36	6	133046041	133046041	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004666	exon7	c.C1473T	p.G491G	.	.	.
VNN2	8875	broad.mit.edu	36	6	133114279	133114279	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004665	exon5	c.C898A	p.L300I	.	.	.
EYA4	2070	broad.mit.edu	36	6	133809568	133809568	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172103	exon4	c.C191A	p.T64N	.	.	.
EYA4	2070	broad.mit.edu	36	6	133868976	133868976	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172103	exon13	c.G1162T	p.E388X	.	.	.
TBC1D7	51256	broad.mit.edu	36	6	13414683	13414683	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001143965	exon7	c.G721A	p.E241K	.	.	.
SLC2A12	154091	broad.mit.edu	36	6	134369740	134369740	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145176	exon3	c.C1470A	p.I490I	.	.	.
SGK1	6446	broad.mit.edu	36	6	134533726	134533726	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143676	exon13	c.C1344A	p.V448V	.	.	.
SGK1	6446	broad.mit.edu	36	6	134540575	134540575	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001143677	exon1	c.G79A	p.A27T	.	.	.
MYB	4602	broad.mit.edu	36	6	135553159	135553159	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001161657	exon5	c.G508A	p.A170T	.	.	.
AHI1	54806	broad.mit.edu	36	6	135663340	135663340	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017651	exon26	c.C3476A	p.S1159Y	.	.	.
AHI1	54806	broad.mit.edu	36	6	135820373	135820373	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017651	exon8	c.T1103G	p.I368S	.	.	.
AHI1	54806	broad.mit.edu	36	6	135853494	135853494	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017651	exon4	c.A95C	p.K32T	.	.	.
BCLAF1	9774	broad.mit.edu	36	6	136631064	136631064	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014739	exon10	c.G2326T	p.E776X	.	.	.
BCLAF1	9774	broad.mit.edu	36	6	136639227	136639227	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014739	exon5	c.G1129T	p.D377Y	.	.	.
MAP7	9053	broad.mit.edu	36	6	136728667	136728667	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198614	exon11	c.A1238C	p.K413T	.	.	.
MAP3K5	4217	broad.mit.edu	36	6	137000204	137000204	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005923	exon14	c.G1968T	p.E656D	.	.	.
SIRT5	23408	broad.mit.edu	36	6	13712693	13712693	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031244	exon10	c.G864T	p.L288F	.	.	.
IL20RA	53832	broad.mit.edu	36	6	137365058	137365058	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014432	exon7	c.G992T	p.G331V	.	.	.
IFNGR1	3459	broad.mit.edu	36	6	137567218	137567218	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000416	exon4	c.G490A	p.E164K	.	.	.
KIAA1244	57221	broad.mit.edu	36	6	138618519	138618519	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020340	exon10	c.G1024A	p.V342M	.	.	.
KIAA1244	57221	broad.mit.edu	36	6	138626274	138626274	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020340	exon12	c.G1961A	p.R654Q	.	.	.
KIAA1244	57221	broad.mit.edu	36	6	138676727	138676727	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020340	exon26	c.G4303T	p.D1435Y	.	.	.
KIAA1244	57221	broad.mit.edu	36	6	138697981	138697981	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020340	exon33	c.T6305G	p.L2102R	.	.	.
HEBP2	23593	broad.mit.edu	36	6	138775747	138775747	+	Nonsense_Mutation	SNP	G	T	T	rs34750897	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014320	exon4	c.G457T	p.E153X	.	.	.
CCDC90A	63933	broad.mit.edu	36	6	13900158	13900158	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031713	exon8	c.G955A	p.E319K	.	.	.
ECT2L	345930	broad.mit.edu	36	6	139243857	139243857	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077706	exon15	c.G1736T	p.R579I	.	.	.
ECT2L	345930	broad.mit.edu	36	6	139251842	139251842	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077706	exon20	c.G2395T	p.E799X	.	.	.
ECT2L	345930	broad.mit.edu	36	6	139265337	139265337	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077706	exon22	c.G2595A	p.K865K	.	.	.
REPS1	85021	broad.mit.edu	36	6	139271604	139271604	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031922	exon18	c.C2107T	p.R703X	.	.	.
RNF182	221687	broad.mit.edu	36	6	14085486	14085486	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001165032	exon4	c.G157T	p.D53Y	.	.	.
GPR126	57211	broad.mit.edu	36	6	142768599	142768599	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001032394	exon14	c.G2125T	p.D709Y	.	.	.
GPR126	57211	broad.mit.edu	36	6	142780158	142780158	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001032394	exon20	c.C2910A	p.V970V	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143116371	143116371	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006734	exon10	c.C6907T	p.R2303W	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143133651	143133651	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006734	exon5	c.T3918G	p.T1306T	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143135893	143135893	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006734	exon5	c.C1676A	p.S559Y	.	.	.
ADAT2	134637	broad.mit.edu	36	6	143801509	143801509	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182503	exon2	c.G112A	p.E38K	.	.	.
PEX3	8504	broad.mit.edu	36	6	143821999	143821999	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003630	exon2	c.G158A	p.R53Q	.	.	.
PEX3	8504	broad.mit.edu	36	6	143833847	143833847	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003630	exon5	c.C388T	p.R130W	.	.	.
PHACTR2	9749	broad.mit.edu	36	6	144116636	144116636	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100165	exon4	c.C348T	p.I116I	.	.	.
PHACTR2	9749	broad.mit.edu	36	6	144128269	144128269	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100165	exon5	c.C633T	p.S211S	.	.	.
PLAGL1	5325	broad.mit.edu	36	6	144304897	144304897	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080955	exon6	c.A593G	p.N198S	.	.	.
STX11	8676	broad.mit.edu	36	6	144549847	144549847	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003764	exon2	c.G390A	p.A130A	.	.	.
STX11	8676	broad.mit.edu	36	6	144550216	144550216	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003764	exon2	c.C759T	p.V253V	.	.	.
UTRN	7402	broad.mit.edu	36	6	144798924	144798924	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007124	exon9	c.C1016A	p.S339Y	.	.	.
UTRN	7402	broad.mit.edu	36	6	144810136	144810136	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007124	exon14	c.C1711T	p.R571X	.	.	.
UTRN	7402	broad.mit.edu	36	6	144810588	144810588	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007124	exon15	c.G1880T	p.R627I	.	.	.
UTRN	7402	broad.mit.edu	36	6	144814302	144814302	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007124	exon17	c.G2176A	p.E726K	.	.	.
UTRN	7402	broad.mit.edu	36	6	144825537	144825537	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007124	exon22	c.G2908T	p.E970X	.	.	.
UTRN	7402	broad.mit.edu	36	6	144837496	144837496	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007124	exon24	c.A3244C	p.N1082H	.	.	.
UTRN	7402	broad.mit.edu	36	6	144884971	144884971	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007124	exon39	c.G5704T	p.D1902Y	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146285115	146285115	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173082	exon20	c.C3794T	p.T1265I	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146306199	146306199	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173082	exon9	c.C2011T	p.R671C	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146306601	146306601	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173082	exon9	c.G1609T	p.E537X	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146309095	146309095	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173082	exon7	c.G1288A	p.E430K	.	.	.
GRM1	2911	broad.mit.edu	36	6	146392595	146392595	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114329	exon2	c.C249T	p.F83F	.	.	.
GRM1	2911	broad.mit.edu	36	6	146392805	146392805	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114329	exon2	c.G459T	p.K153N	.	.	.
GRM1	2911	broad.mit.edu	36	6	146762304	146762304	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114329	exon8	c.C2436A	p.I812I	.	.	.
RAB32	10981	broad.mit.edu	36	6	146917333	146917333	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006834	exon3	c.C577A	p.L193I	.	.	.
STXBP5	134957	broad.mit.edu	36	6	147602099	147602099	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127715	exon4	c.G431T	p.R144M	.	.	.
STXBP5	134957	broad.mit.edu	36	6	147625174	147625174	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001127715	exon6	c.G622A	p.E208K	.	.	.
STXBP5	134957	broad.mit.edu	36	6	147674328	147674328	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127715	exon11	c.T1117G	p.L373V	.	.	.
SASH1	23328	broad.mit.edu	36	6	148890416	148890416	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015278	exon12	c.C1419A	p.V473V	.	.	.
SASH1	23328	broad.mit.edu	36	6	148906952	148906952	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015278	exon18	c.G2653T	p.D885Y	.	.	.
ZC3H12D	340152	broad.mit.edu	36	6	149824738	149824738	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207360	exon3	c.G367T	p.D123Y	.	.	.
KATNA1	11104	broad.mit.edu	36	6	149957955	149957955	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007044	exon10	c.C1386T	p.F462F	.	.	.
LATS1	9113	broad.mit.edu	36	6	150043088	150043088	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004690	exon5	c.C2209T	p.R737X	.	.	.
PCMT1	5110	broad.mit.edu	36	6	150159328	150159328	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005389	exon6	c.C677T	p.A226V	.	.	.
RAET1E	135250	broad.mit.edu	36	6	150252271	150252271	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139165	exon3	c.G528A	p.G176G	.	.	.
MTHFD1L	25902	broad.mit.edu	36	6	151285064	151285064	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015440	exon10	c.C1015T	p.R339C	.	.	.
MTHFD1L	25902	broad.mit.edu	36	6	151372685	151372685	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015440	exon21	c.G2163T	p.E721D	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151714167	151714167	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005100	exon4	c.G2948T	p.G983V	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151714361	151714361	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005100	exon4	c.G3142A	p.E1048K	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151715063	151715063	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005100	exon4	c.G3844A	p.E1282K	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151715215	151715215	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005100	exon4	c.C3996T	p.P1332P	.	.	.
ZBTB2	57621	broad.mit.edu	36	6	151736376	151736376	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020861	exon2	c.C90T	p.I30I	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151899255	151899255	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025059	exon2	c.T167G	p.F56C	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151900893	151900893	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025059	exon3	c.G207T	p.K69N	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151936287	151936287	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025059	exon6	c.G1060A	p.E354K	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151978476	151978476	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025059	exon10	c.C1916A	p.S639Y	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152593426	152593426	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015293	exon30	c.G4716A	p.Q1572Q	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152607401	152607401	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015293	exon21	c.C3228T	p.V1076V	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152656866	152656866	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015293	exon9	c.C1344A	p.F448L	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152684156	152684156	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033071	exon83	c.G15933T	p.K5311N	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152684631	152684631	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033071	exon82	c.C15788A	p.S5263Y	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152692605	152692605	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033071	exon77	c.C14695T	p.L4899F	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152693661	152693661	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033071	exon77	c.C13639A	p.L4547I	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152716526	152716526	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033071	exon68	c.T10928G	p.V3643G	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152722274	152722274	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033071	exon65	c.G10333A	p.E3445K	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152732345	152732345	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033071	exon60	c.G9626A	p.R3209H	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152735891	152735891	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033071	exon59	c.C9502A	p.L3168I	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152739688	152739688	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033071	exon57	c.C9083T	p.S3028F	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152744177	152744177	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033071	exon56	c.C8687A	p.S2896Y	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152750077	152750077	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033071	exon54	c.C8331T	p.F2777F	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152865545	152865545	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033071	exon10	c.G825T	p.E275D	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152883298	152883298	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033071	exon5	c.G298A	p.E100K	.	.	.
FBXO5	26271	broad.mit.edu	36	6	153337799	153337799	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012177	exon2	c.C754T	p.R252X	.	.	.
MTRF1L	54516	broad.mit.edu	36	6	153352876	153352876	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019041	exon7	c.A990G	p.P330P	.	.	.
RGS17	26575	broad.mit.edu	36	6	153387207	153387207	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012419	exon4	c.G327T	p.E109D	.	.	.
RBM16	22828	broad.mit.edu	36	6	155136850	155136850	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014892	exon2	c.G66A	p.S22S	.	.	.
RBM16	22828	broad.mit.edu	36	6	155150748	155150748	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014892	exon4	c.G221A	p.R74Q	.	.	.
RBM16	22828	broad.mit.edu	36	6	155183147	155183147	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014892	exon15	c.A1780G	p.T594A	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155500314	155500314	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012454	exon4	c.G1506T	p.K502N	.	.	.
JARID2	3720	broad.mit.edu	36	6	15560382	15560382	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004973	exon4	c.C490T	p.R164X	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155619750	155619750	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012454	exon26	c.C4909T	p.R1637X	.	.	.
NOX3	50508	broad.mit.edu	36	6	155791770	155791770	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015718	exon9	c.C995T	p.S332L	.	.	.
NOX3	50508	broad.mit.edu	36	6	155817671	155817671	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015718	exon3	c.G221A	p.R74Q	.	.	.
JARID2	3720	broad.mit.edu	36	6	15605157	15605157	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004973	exon7	c.C1722T	p.I574I	.	.	.
JARID2	3720	broad.mit.edu	36	6	15609240	15609240	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004973	exon8	c.C2069A	p.A690D	.	.	.
ARID1B	57492	broad.mit.edu	36	6	157473313	157473313	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017519	exon6	c.C2258T	p.P753L	.	.	.
SNX9	51429	broad.mit.edu	36	6	158237956	158237956	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016224	exon5	c.A410C	p.N137T	.	.	.
SYNJ2	8871	broad.mit.edu	36	6	158434037	158434037	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003898	exon26	c.G3657T	p.E1219D	.	.	.
SERAC1	84947	broad.mit.edu	36	6	158452427	158452427	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032861	exon17	c.C1924A	p.Q642K	.	.	.
TULP4	56995	broad.mit.edu	36	6	158822135	158822135	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001007466	exon8	c.G1312A	p.E438K	.	.	.
TULP4	56995	broad.mit.edu	36	6	158830635	158830635	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007466	exon9	c.C1514A	p.S505Y	.	.	.
TULP4	56995	broad.mit.edu	36	6	158839758	158839758	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007466	exon12	c.A1940G	p.K647R	.	.	.
SYTL3	94120	broad.mit.edu	36	6	159086569	159086569	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001009991	exon11	c.G721T	p.E241X	.	.	.
TAGAP	117289	broad.mit.edu	36	6	159377344	159377344	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_054114	exon10	c.C1699T	p.R567C	.	.	.
TAGAP	117289	broad.mit.edu	36	6	159381757	159381757	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_054114	exon7	c.C573T	p.I191I	.	.	.
TAGAP	117289	broad.mit.edu	36	6	159382380	159382380	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_054114	exon6	c.C471A	p.V157V	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159562709	159562709	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032532	exon6	c.G759T	p.K253N	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159573321	159573321	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032532	exon11	c.G1787A	p.G596D	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159573489	159573489	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032532	exon11	c.G1955A	p.R652H	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159575436	159575436	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032532	exon11	c.G3902T	p.R1301M	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159587977	159587977	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032532	exon15	c.T4676A	p.V1559D	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159602285	159602285	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032532	exon19	c.G5248A	p.E1750K	.	.	.
PNLDC1	154197	broad.mit.edu	36	6	160145015	160145015	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173516	exon5	c.C244T	p.L82F	.	.	.
PNLDC1	154197	broad.mit.edu	36	6	160145655	160145655	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173516	exon6	c.C424T	p.R142C	.	.	.
PNLDC1	154197	broad.mit.edu	36	6	160152730	160152730	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173516	exon11	c.C828T	p.Y276Y	.	.	.
PNLDC1	154197	broad.mit.edu	36	6	160160076	160160076	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173516	exon17	c.C1333A	p.L445I	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160373686	160373686	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000876	exon8	c.C996T	p.G332G	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160405875	160405875	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000876	exon29	c.G4067A	p.R1356Q	.	.	.
SLC22A3	6581	broad.mit.edu	36	6	160778063	160778063	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021977	exon7	c.G1118T	p.G373V	.	.	.
LPA	4018	broad.mit.edu	36	6	160872883	160872883	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005577	exon40	c.C5991T	p.F1997F	.	.	.
LPA	4018	broad.mit.edu	36	6	160882137	160882137	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005577	exon36	c.C5586T	p.C1862C	.	.	.
LPA	4018	broad.mit.edu	36	6	160926096	160926096	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005577	exon27	c.C4261A	p.R1421R	.	.	.
LPA	4018	broad.mit.edu	36	6	160930685	160930685	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005577	exon25	c.A3837G	p.G1279G	.	.	.
PLG	5340	broad.mit.edu	36	6	161057743	161057743	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000301	exon7	c.G745A	p.D249N	.	.	.
AGPAT4	56895	broad.mit.edu	36	6	161507393	161507393	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020133	exon3	c.C225A	p.I75I	.	.	.
PARK2	5071	broad.mit.edu	36	6	161910391	161910391	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004562	exon8	c.C919A	p.L307M	.	.	.
PACRG	135138	broad.mit.edu	36	6	163655856	163655856	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080378	exon6	c.C621T	p.S207S	.	.	.
QKI	9444	broad.mit.edu	36	6	163796317	163796317	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206855	exon2	c.G159T	p.R53R	.	.	.
ATXN1	6310	broad.mit.edu	36	6	16436116	16436116	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000332	exon8	c.C405A	p.Y135X	.	.	.
C6orf118	168090	broad.mit.edu	36	6	165633954	165633954	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144980	exon3	c.A765T	p.K255N	.	.	.
PDE10A	10846	broad.mit.edu	36	6	165676874	165676874	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006661	exon20	c.C2063A	p.A688D	.	.	.
PDE10A	10846	broad.mit.edu	36	6	165729806	165729806	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006661	exon15	c.G1381T	p.E461X	.	.	.
RPS6KA2	6196	broad.mit.edu	36	6	166834401	166834401	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021135	exon7	c.A568G	p.I190V	.	.	.
RPS6KA2	6196	broad.mit.edu	36	6	167191680	167191680	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001006932	exon2	c.G121T	p.E41X	.	.	.
RNASET2	8635	broad.mit.edu	36	6	167264581	167264581	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003730	exon8	c.G508T	p.D170Y	.	.	.
FGFR1OP	11116	broad.mit.edu	36	6	167367402	167367402	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194429	exon11	c.G1018T	p.E340X	.	.	.
GPR31	2853	broad.mit.edu	36	6	167490734	167490734	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005299	exon1	c.C576A	p.L192L	.	.	.
GPR31	2853	broad.mit.edu	36	6	167491096	167491096	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005299	exon1	c.G214A	p.A72T	.	.	.
TTLL2	83887	broad.mit.edu	36	6	167672256	167672256	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031949	exon2	c.G179A	p.R60H	.	.	.
TTLL2	83887	broad.mit.edu	36	6	167674229	167674229	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031949	exon3	c.A851C	p.K284T	.	.	.
MLLT4	4301	broad.mit.edu	36	6	168054644	168054644	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040000	exon14	c.C1784A	p.S595Y	.	.	.
MLLT4	4301	broad.mit.edu	36	6	168054970	168054970	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040000	exon15	c.C1989A	p.V663V	.	.	.
MLLT4	4301	broad.mit.edu	36	6	168094742	168094742	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040000	exon29	c.C3838T	p.R1280X	.	.	.
FRMD1	79981	broad.mit.edu	36	6	168207216	168207216	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001122841	exon6	c.C514A	p.L172M	.	.	.
THBS2	7058	broad.mit.edu	36	6	169365325	169365325	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003247	exon19	c.C2944T	p.R982C	.	.	.
THBS2	7058	broad.mit.edu	36	6	169371674	169371674	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003247	exon15	c.C2177A	p.S726Y	.	.	.
THBS2	7058	broad.mit.edu	36	6	169390517	169390517	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003247	exon4	c.G529A	p.E177K	.	.	.
WDR27	253769	broad.mit.edu	36	6	169804435	169804435	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182552	exon9	c.G915A	p.Q305Q	.	.	.
PHF10	55274	broad.mit.edu	36	6	169847324	169847324	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018288	exon11	c.A1241G	p.D414G	.	.	.
DLL1	28514	broad.mit.edu	36	6	170439345	170439345	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005618	exon4	c.C577T	p.R193C	.	.	.
DLL1	28514	broad.mit.edu	36	6	170439391	170439391	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005618	exon4	c.C531T	p.F177F	.	.	.
FAM120B	84498	broad.mit.edu	36	6	170468568	170468568	+	Silent	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032448	exon2	c.A165T	p.P55P	.	.	.
FAM120B	84498	broad.mit.edu	36	6	170509247	170509247	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032448	exon6	c.G2199A	p.T733T	.	.	.
FAM120B	84498	broad.mit.edu	36	6	170539492	170539492	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032448	exon7	c.C2476A	p.L826I	.	.	.
PDCD2	5134	broad.mit.edu	36	6	170728575	170728575	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002598	exon6	c.G1032A	p.P344P	.	.	.
RBM24	221662	broad.mit.edu	36	6	17400120	17400120	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153020	exon3	c.G367A	p.A123T	.	.	.
CAP2	10486	broad.mit.edu	36	6	17647520	17647520	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006366	exon8	c.C678A	p.S226S	.	.	.
CAP2	10486	broad.mit.edu	36	6	17649316	17649316	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006366	exon9	c.A960G	p.K320K	.	.	.
NUP153	9972	broad.mit.edu	36	6	17745583	17745583	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005124	exon16	c.G2244A	p.P748P	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17873115	17873115	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022113	exon39	c.G4623T	p.R1541S	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17887180	17887180	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022113	exon33	c.C4069A	p.L1357M	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17964327	17964327	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022113	exon5	c.G226T	p.E76X	.	.	.
NHLRC1	378884	broad.mit.edu	36	6	18230573	18230573	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198586	exon1	c.G244A	p.D82N	.	.	.
TPMT	7172	broad.mit.edu	36	6	18247882	18247882	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000367	exon5	c.C412A	p.L138I	.	.	.
CDKAL1	54901	broad.mit.edu	36	6	21063666	21063666	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017774	exon10	c.G780A	p.T260T	.	.	.
PRL	5617	broad.mit.edu	36	6	22402688	22402688	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000948	exon2	c.G133T	p.D45Y	.	.	.
NRSN1	140767	broad.mit.edu	36	6	24242656	24242656	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080723	exon3	c.T122G	p.I41S	.	.	.
DCDC2	51473	broad.mit.edu	36	6	24461806	24461806	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195610	exon3	c.G318T	p.K106N	.	.	.
MRS2	57380	broad.mit.edu	36	6	24531151	24531151	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020662	exon10	c.G1115T	p.R372I	.	.	.
GPLD1	2822	broad.mit.edu	36	6	24554015	24554015	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001503	exon19	c.G1844A	p.R615Q	.	.	.
GPLD1	2822	broad.mit.edu	36	6	24564716	24564716	+	Silent	SNP	C	T	T	rs1139464	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001503	exon13	c.G1137A	p.A379A	.	.	.
KIAA0319	9856	broad.mit.edu	36	6	24655376	24655376	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001168377	exon19	c.G3032T	p.R1011I	.	.	.
C6orf62	81688	broad.mit.edu	36	6	24824456	24824456	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030939	exon2	c.A205G	p.K69E	.	.	.
FAM65B	9750	broad.mit.edu	36	6	24981966	24981966	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015864	exon3	c.C142T	p.P48S	.	.	.
HIST1H2AA	221613	broad.mit.edu	36	6	25834520	25834520	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170745	exon1	c.G215A	p.R72H	.	.	.
HIST1H2BA	255626	broad.mit.edu	36	6	25835378	25835378	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170610	exon1	c.G263A	p.R88H	.	.	.
SLC17A1	6568	broad.mit.edu	36	6	25909179	25909179	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005074	exon11	c.G1187T	p.G396V	.	.	.
SLC17A1	6568	broad.mit.edu	36	6	25934783	25934783	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005074	exon3	c.T92C	p.V31A	.	.	.
SLC17A2	10246	broad.mit.edu	36	6	26023982	26023982	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005835	exon9	c.C1024A	p.L342I	.	.	.
SLC17A2	10246	broad.mit.edu	36	6	26024964	26024964	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005835	exon8	c.C858A	p.F286L	.	.	.
HIST1H4A	8359	broad.mit.edu	36	6	26130067	26130067	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003538	exon1	c.T182C	p.V61A	.	.	.
HIST1H2BB	3018	broad.mit.edu	36	6	26151500	26151500	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021062	exon1	c.A365G	p.Y122C	.	.	.
BTN3A2	11118	broad.mit.edu	36	6	26478552	26478552	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001197249	exon4	c.G331A	p.E111K	.	.	.
BTN3A3	10384	broad.mit.edu	36	6	26552481	26552481	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006994	exon4	c.G403A	p.E135K	.	.	.
BTN1A1	696	broad.mit.edu	36	6	26610065	26610065	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001732	exon2	c.C348A	p.V116V	.	.	.
ABT1	29777	broad.mit.edu	36	6	26706188	26706188	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013375	exon2	c.G309T	p.K103N	.	.	.
ZNF391	346157	broad.mit.edu	36	6	27476171	27476171	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001076781	exon3	c.G43T	p.E15X	.	.	.
ZNF391	346157	broad.mit.edu	36	6	27476238	27476238	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001076781	exon3	c.C110A	p.S37Y	.	.	.
ZNF391	346157	broad.mit.edu	36	6	27476932	27476932	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001076781	exon3	c.G804A	p.Q268Q	.	.	.
ZNF391	346157	broad.mit.edu	36	6	27477075	27477075	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001076781	exon3	c.G947A	p.R316Q	.	.	.
ZNF184	7738	broad.mit.edu	36	6	27527164	27527164	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007149	exon6	c.G2153T	p.R718I	.	.	.
ZNF184	7738	broad.mit.edu	36	6	27527885	27527885	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007149	exon6	c.G1432T	p.E478X	.	.	.
ZNF184	7738	broad.mit.edu	36	6	27528198	27528198	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007149	exon6	c.G1119T	p.R373S	.	.	.
HIST1H2BM	8342	broad.mit.edu	36	6	27890990	27890990	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003521	exon1	c.A190C	p.N64H	.	.	.
OR2B2	81697	broad.mit.edu	36	6	27987628	27987628	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033057	exon1	c.T449A	p.I150N	.	.	.
OR2B2	81697	broad.mit.edu	36	6	27987737	27987737	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033057	exon1	c.C340A	p.L114I	.	.	.
OR2B2	81697	broad.mit.edu	36	6	27987850	27987850	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033057	exon1	c.G227T	p.S76I	.	.	.
ZSCAN16	80345	broad.mit.edu	36	6	28201300	28201300	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025231	exon2	c.C100T	p.P34S	.	.	.
ZNF192	7745	broad.mit.edu	36	6	28229755	28229755	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006298	exon6	c.C1718A	p.S573Y	.	.	.
NKAPL	222698	broad.mit.edu	36	6	28335441	28335441	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007531	exon1	c.C313T	p.R105W	.	.	.
NKAPL	222698	broad.mit.edu	36	6	28335672	28335672	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001007531	exon1	c.C544T	p.R182C	.	.	.
ZNF187	7741	broad.mit.edu	36	6	28352350	28352350	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152736	exon4	c.G533C	p.C178S	.	.	.
PGBD1	84547	broad.mit.edu	36	6	28377576	28377576	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184743	exon7	c.G1966A	p.E656K	.	.	.
SCAND3	114821	broad.mit.edu	36	6	28649312	28649312	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052923	exon4	c.G2333A	p.R778Q	.	.	.
SCAND3	114821	broad.mit.edu	36	6	28650789	28650789	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052923	exon3	c.G1672T	p.E558X	.	.	.
SCAND3	114821	broad.mit.edu	36	6	28650880	28650880	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052923	exon3	c.T1581G	p.A527A	.	.	.
SCAND3	114821	broad.mit.edu	36	6	28651095	28651095	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052923	exon3	c.G1366T	p.E456X	.	.	.
SERPINB6	5269	broad.mit.edu	36	6	2899879	2899879	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195291	exon5	c.G376A	p.A126T	.	.	.
OR2W1	26692	broad.mit.edu	36	6	29120488	29120488	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030903	exon1	c.C444A	p.I148I	.	.	.
OR14J1	442191	broad.mit.edu	36	6	29383097	29383097	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030946	exon1	c.C652T	p.R218C	.	.	.
OR5V1	81696	broad.mit.edu	36	6	29431944	29431944	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030876	exon1	c.G8T	p.R3I	.	.	.
OR12D3	81797	broad.mit.edu	36	6	29450584	29450584	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030959	exon1	c.G460A	p.A154T	.	.	.
OR12D3	81797	broad.mit.edu	36	6	29451038	29451038	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030959	exon1	c.G6T	p.E2D	.	.	.
OR11A1	26531	broad.mit.edu	36	6	29502843	29502843	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013937	exon1	c.C555T	p.F185F	.	.	.
OR2H1	26716	broad.mit.edu	36	6	29538414	29538414	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030883	exon3	c.C889T	p.R297X	.	.	.
MAS1L	116511	broad.mit.edu	36	6	29562652	29562652	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052967	exon1	c.C1007T	p.A336V	.	.	.
MAS1L	116511	broad.mit.edu	36	6	29563344	29563344	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052967	exon1	c.G315A	p.T105T	.	.	.
MAS1L	116511	broad.mit.edu	36	6	29563542	29563542	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052967	exon1	c.G117T	p.Q39H	.	.	.
GABBR1	2550	broad.mit.edu	36	6	29682655	29682655	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021904	exon17	c.G2029T	p.E677X	.	.	.
GABBR1	2550	broad.mit.edu	36	6	29685077	29685077	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021904	exon14	c.G1581A	p.Q527Q	.	.	.
GABBR1	2550	broad.mit.edu	36	6	29689139	29689139	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021904	exon11	c.G1240A	p.A414T	.	.	.
ZFP57	346171	broad.mit.edu	36	6	29752640	29752640	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001109809	exon1	c.G120T	p.K40N	.	.	.
HLA-F	3134	broad.mit.edu	36	6	29802839	29802839	+	Missense_Mutation	SNP	C	T	T	rs57486551	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098479	exon7	c.C1237T	p.R413C	.	.	.
HLA-G	3135	broad.mit.edu	36	6	29905578	29905578	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002127	exon6	c.C902A	p.S301Y	.	.	.
HLA-A	3105	broad.mit.edu	36	6	30019962	30019962	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002116	exon4	c.C704T	p.A235V	.	.	.
RNF39	80352	broad.mit.edu	36	6	30151348	30151348	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025236	exon1	c.G198A	p.W66X	.	.	.
TRIM10	10107	broad.mit.edu	36	6	30229988	30229988	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006778	exon7	c.C1183T	p.R395W	.	.	.
TRIM10	10107	broad.mit.edu	36	6	30230233	30230233	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006778	exon7	c.C938A	p.S313Y	.	.	.
ABCF1	23	broad.mit.edu	36	6	30666379	30666379	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001025091	exon25	c.C2460T	p.I820I	.	.	.
KIAA1949	170954	broad.mit.edu	36	6	30760867	30760867	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001134870	exon2	c.C908T	p.A303V	.	.	.
KIAA1949	170954	broad.mit.edu	36	6	30761310	30761310	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001134870	exon2	c.G465T	p.G155G	.	.	.
MDC1	9656	broad.mit.edu	36	6	30780696	30780696	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014641	exon10	c.G4243A	p.E1415K	.	.	.
DPCR1	135656	broad.mit.edu	36	6	31028168	31028168	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080870	exon2	c.G3948T	p.E1316D	.	.	.
DPCR1	135656	broad.mit.edu	36	6	31028841	31028841	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080870	exon3	c.C4150A	p.L1384I	.	.	.
CDSN	1041	broad.mit.edu	36	6	31192508	31192508	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001264	exon2	c.T863A	p.V288E	.	.	.
CCHCR1	54535	broad.mit.edu	36	6	31226728	31226728	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001105563	exon5	c.C844T	p.R282W	.	.	.
MICB	4277	broad.mit.edu	36	6	31582882	31582882	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005931	exon4	c.C718T	p.R240C	.	.	.
BAT1	7919	broad.mit.edu	36	6	31612273	31612273	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004640	exon5	c.A599C	p.K200T	.	.	.
BAT1	7919	broad.mit.edu	36	6	31616280	31616280	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004640	exon2	c.G9A	p.E3E	.	.	.
ATP6V1G2	534	broad.mit.edu	36	6	31621241	31621241	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138282	exon3	c.C157T	p.R53C	.	.	.
TUBB2B	347733	broad.mit.edu	36	6	3169999	3169999	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178012	exon4	c.C1323T	p.G441G	.	.	.
BAT2	7916	broad.mit.edu	36	6	31701563	31701563	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004638	exon8	c.C775A	p.L259I	.	.	.
BAT2	7916	broad.mit.edu	36	6	31707436	31707436	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004638	exon16	c.C3007A	p.L1003I	.	.	.
BAT3	7917	broad.mit.edu	36	6	31717972	31717972	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001098534	exon15	c.G2123A	p.G708D	.	.	.
APOM	55937	broad.mit.edu	36	6	31733841	31733841	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019101	exon6	c.A563G	p.N188S	.	.	.
C6orf47	57827	broad.mit.edu	36	6	31735593	31735593	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021184	exon1	c.G111T	p.E37D	.	.	.
DDAH2	23564	broad.mit.edu	36	6	31804499	31804499	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013974	exon3	c.C300T	p.V100V	.	.	.
C6orf26	401251	broad.mit.edu	36	6	31839187	31839187	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039651	exon2	c.C131T	p.A44V	.	.	.
C2	717	broad.mit.edu	36	6	32003525	32003525	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145903	exon1	c.T17C	p.V6A	.	.	.
C2	717	broad.mit.edu	36	6	32013124	32013124	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145903	exon6	c.C642A	p.V214V	.	.	.
C2	717	broad.mit.edu	36	6	32018782	32018782	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145903	exon8	c.G891T	p.K297N	.	.	.
C2	717	broad.mit.edu	36	6	32019256	32019256	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145903	exon10	c.G1144A	p.D382N	.	.	.
C2	717	broad.mit.edu	36	6	32019970	32019970	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145903	exon13	c.G1494T	p.K498N	.	.	.
CFB	629	broad.mit.edu	36	6	32022337	32022337	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001710	exon2	c.G273T	p.K91N	.	.	.
CFB	629	broad.mit.edu	36	6	32026988	32026988	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001710	exon15	c.G1944T	p.K648N	.	.	.
C4B	721	broad.mit.edu	36	6	32072223	32072223	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007293	exon28	c.G3543T	p.E1181D	.	.	.
TNXB	7148	broad.mit.edu	36	6	32123667	32123667	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019105	exon30	c.C10140T	p.F3380F	.	.	.
TNXB	7148	broad.mit.edu	36	6	32145397	32145397	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019105	exon15	c.G5498C	p.G1833A	.	.	.
FKBPL	63943	broad.mit.edu	36	6	32204844	32204844	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022110	exon2	c.G692A	p.R231Q	.	.	.
PPT2	9374	broad.mit.edu	36	6	32238665	32238665	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138717	exon9	c.G887A	p.R296H	.	.	.
NOTCH4	4855	broad.mit.edu	36	6	32274796	32274796	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004557	exon24	c.C4420T	p.R1474W	.	.	.
NOTCH4	4855	broad.mit.edu	36	6	32291091	32291091	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004557	exon12	c.G1911A	p.Q637Q	.	.	.
NOTCH4	4855	broad.mit.edu	36	6	32292728	32292728	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004557	exon11	c.A1833A	p.G611G	.	.	.
C6orf10	10665	broad.mit.edu	36	6	32368791	32368791	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006781	exon23	c.A1637T	p.Y546F	.	.	.
C6orf10	10665	broad.mit.edu	36	6	32425549	32425549	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006781	exon9	c.G295T	p.E99X	.	.	.
BTNL2	56244	broad.mit.edu	36	6	32472138	32472138	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019602	exon5	c.C734A	p.S245Y	.	.	.
HLA-DRA	3122	broad.mit.edu	36	6	32519054	32519054	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019111	exon3	c.G443A	p.R148Q	.	.	.
HLA-DRB5	3127	broad.mit.edu	36	6	32595347	32595347	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002125	exon3	c.C430A	p.L144M	.	.	.
HLA-DRB1	3123	broad.mit.edu	36	6	32657534	32657534	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002124	exon3	c.T430A	p.S144T	.	.	.
HLA-DQA2	3118	broad.mit.edu	36	6	32821005	32821005	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020056	exon2	c.C174A	p.F58L	.	.	.
TAP2	6891	broad.mit.edu	36	6	32906511	32906511	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018833	exon8	c.G1323T	p.E441D	.	.	.
TAP1	6890	broad.mit.edu	36	6	32923382	32923382	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000593	exon9	c.G1969T	p.E657X	.	.	.
TAP1	6890	broad.mit.edu	36	6	32926191	32926191	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000593	exon5	c.C1312T	p.R438X	.	.	.
TAP1	6890	broad.mit.edu	36	6	32927959	32927959	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000593	exon3	c.A929C	p.N310T	.	.	.
HLA-DMB	3109	broad.mit.edu	36	6	33014602	33014602	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002118	exon2	c.G174T	p.E58D	.	.	.
BRD2	6046	broad.mit.edu	36	6	33056348	33056348	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005104	exon13	c.A2281G	p.T761A	.	.	.
HLA-DOA	3111	broad.mit.edu	36	6	33083100	33083100	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002119	exon3	c.C579A	p.H193Q	.	.	.
HLA-DPB1	3115	broad.mit.edu	36	6	33156518	33156518	+	Silent	SNP	C	T	T	rs41555415	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002121	exon2	c.C192T	p.F64F	.	.	.
HSD17B8	7923	broad.mit.edu	36	6	33281595	33281595	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014234	exon6	c.C579A	p.R193R	.	.	.
VPS52	6293	broad.mit.edu	36	6	33345293	33345293	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022553	exon5	c.T324C	p.N108N	.	.	.
WDR46	9277	broad.mit.edu	36	6	33363416	33363416	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164267	exon7	c.G519T	p.K173N	.	.	.
WDR46	9277	broad.mit.edu	36	6	33363729	33363729	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164267	exon6	c.G452A	p.R151Q	.	.	.
SYNGAP1	8831	broad.mit.edu	36	6	33513430	33513430	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006772	exon8	c.G770T	p.S257I	.	.	.
SYNGAP1	8831	broad.mit.edu	36	6	33513796	33513796	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006772	exon8	c.C1136T	p.S379L	.	.	.
SYNGAP1	8831	broad.mit.edu	36	6	33519022	33519022	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006772	exon15	c.C2715A	p.R905R	.	.	.
C6orf125	84300	broad.mit.edu	36	6	33777130	33777130	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032340	exon2	c.C184T	p.R62X	.	.	.
IP6K3	117283	broad.mit.edu	36	6	33798749	33798749	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_054111	exon6	c.G959A	p.R320H	.	.	.
SNRPC	6631	broad.mit.edu	36	6	34838453	34838453	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003093	exon3	c.A155C	p.K52T	.	.	.
UHRF1BP1	54887	broad.mit.edu	36	6	34910513	34910513	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017754	exon6	c.G566A	p.R189Q	.	.	.
UHRF1BP1	54887	broad.mit.edu	36	6	34946672	34946672	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017754	exon18	c.G3782A	p.R1261H	.	.	.
IRF4	3662	broad.mit.edu	36	6	352593	352593	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195286	exon9	c.G1348T	p.E450X	.	.	.
ZNF76	7629	broad.mit.edu	36	6	35363489	35363489	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003427	exon5	c.G321T	p.E107D	.	.	.
ZNF76	7629	broad.mit.edu	36	6	35367390	35367390	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003427	exon9	c.C829T	p.R277C	.	.	.
RPL10A	4736	broad.mit.edu	36	6	35546348	35546348	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007104	exon6	c.C497T	p.A166V	.	.	.
FKBP5	2289	broad.mit.edu	36	6	35695914	35695914	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145777	exon4	c.T366G	p.I122M	.	.	.
C6orf127	340204	broad.mit.edu	36	6	35863706	35863706	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001010886	exon3	c.G307A	p.A103T	.	.	.
CLPS	1208	broad.mit.edu	36	6	35873013	35873013	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001832	exon1	c.G31A	p.A11T	.	.	.
LHFPL5	222662	broad.mit.edu	36	6	35881461	35881461	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182548	exon1	c.G36T	p.K12N	.	.	.
SRPK1	6732	broad.mit.edu	36	6	35945410	35945410	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003137	exon11	c.C1238A	p.S413Y	.	.	.
SLC26A8	116369	broad.mit.edu	36	6	36073639	36073639	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052961	exon5	c.G481A	p.V161I	.	.	.
BRPF3	27154	broad.mit.edu	36	6	36276294	36276294	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015695	exon2	c.G217A	p.E73K	.	.	.
BRPF3	27154	broad.mit.edu	36	6	36290050	36290050	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015695	exon8	c.C2898T	p.I966I	.	.	.
KCTD20	222658	broad.mit.edu	36	6	36555452	36555452	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173562	exon5	c.G644A	p.R215Q	.	.	.
STK38	11329	broad.mit.edu	36	6	36601391	36601391	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007271	exon3	c.G138T	p.K46N	.	.	.
C6orf89	221477	broad.mit.edu	36	6	36995408	36995408	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152734	exon7	c.G923A	p.R308Q	.	.	.
FTSJD2	23070	broad.mit.edu	36	6	37538640	37538640	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015050	exon13	c.C1383T	p.F461F	.	.	.
FTSJD2	23070	broad.mit.edu	36	6	37551932	37551932	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015050	exon20	c.G2089A	p.D697N	.	.	.
MDGA1	266727	broad.mit.edu	36	6	37727958	37727958	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153487	exon7	c.G1119T	p.K373N	.	.	.
MDGA1	266727	broad.mit.edu	36	6	37734095	37734095	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153487	exon3	c.G286A	p.E96K	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38846303	38846303	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001371	exon10	c.G1103T	p.R368I	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38862577	38862577	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001371	exon16	c.C1803T	p.F601F	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38866120	38866120	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001371	exon18	c.C2091T	p.V697V	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38883461	38883461	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001371	exon22	c.T2597G	p.F866C	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38939791	38939791	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001371	exon43	c.G5824T	p.E1942X	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38948712	38948712	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001371	exon49	c.G6639T	p.E2213D	.	.	.
DNAH8	1769	broad.mit.edu	36	6	39058142	39058142	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001371	exon84	c.G12226A	p.E4076K	.	.	.
GLP1R	2740	broad.mit.edu	36	6	39132202	39132202	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002062	exon2	c.C130T	p.R44C	.	.	.
GLP1R	2740	broad.mit.edu	36	6	39148698	39148698	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002062	exon6	c.G592T	p.D198Y	.	.	.
KCNK5	8645	broad.mit.edu	36	6	39267237	39267237	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003740	exon5	c.G907T	p.D303Y	.	.	.
KIF6	221458	broad.mit.edu	36	6	39433089	39433089	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145027	exon19	c.C2122T	p.P708S	.	.	.
KIF6	221458	broad.mit.edu	36	6	39615819	39615819	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145027	exon13	c.C1583T	p.P528L	.	.	.
PRPF4B	8899	broad.mit.edu	36	6	3977028	3977028	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003913	exon2	c.C278A	p.S93Y	.	.	.
PRPF4B	8899	broad.mit.edu	36	6	3977159	3977159	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003913	exon2	c.T409G	p.L137V	.	.	.
PRPF4B	8899	broad.mit.edu	36	6	3982800	3982800	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003913	exon3	c.G1409T	p.R470I	.	.	.
PRPF4B	8899	broad.mit.edu	36	6	3986049	3986049	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003913	exon4	c.G1457A	p.R486Q	.	.	.
DAAM2	23500	broad.mit.edu	36	6	39977115	39977115	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015345	exon24	c.C2868A	p.F956L	.	.	.
PRPF4B	8899	broad.mit.edu	36	6	4002345	4002345	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003913	exon13	c.A2658C	p.K886N	.	.	.
PRPF4B	8899	broad.mit.edu	36	6	4003967	4003967	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003913	exon14	c.C2740T	p.R914X	.	.	.
C6orf146	222826	broad.mit.edu	36	6	4014219	4014219	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173563	exon7	c.G1237T	p.E413X	.	.	.
C6orf146	222826	broad.mit.edu	36	6	4014598	4014598	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173563	exon7	c.G858T	p.L286F	.	.	.
UNC5CL	222643	broad.mit.edu	36	6	41110600	41110600	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173561	exon2	c.C192A	p.V64V	.	.	.
TREM2	54209	broad.mit.edu	36	6	41235513	41235513	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018965	exon3	c.C477A	p.I159I	.	.	.
TREML4	285852	broad.mit.edu	36	6	41304524	41304524	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198153	exon2	c.C158A	p.S53Y	.	.	.
PRICKLE4	29964	broad.mit.edu	36	6	41862620	41862620	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013397	exon8	c.G930T	p.E310D	.	.	.
TAF8	129685	broad.mit.edu	36	6	42144299	42144299	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138572	exon7	c.G756T	p.E252D	.	.	.
GUCA1A	2978	broad.mit.edu	36	6	42249398	42249398	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000409	exon3	c.G69T	p.K23N	.	.	.
UBR2	23304	broad.mit.edu	36	6	42682329	42682329	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184801	exon7	c.G826T	p.D276Y	.	.	.
UBR2	23304	broad.mit.edu	36	6	42708398	42708398	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015255	exon12	c.T1412G	p.F471C	.	.	.
UBR2	23304	broad.mit.edu	36	6	42766793	42766793	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015255	exon47	c.T5172G	p.I1724M	.	.	.
KIAA0240	23506	broad.mit.edu	36	6	42905470	42905470	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015349	exon5	c.C1421A	p.S474Y	.	.	.
PEX6	5190	broad.mit.edu	36	6	43044057	43044057	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000287	exon7	c.G1637A	p.R546H	.	.	.
MEA1	4201	broad.mit.edu	36	6	43088256	43088256	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014623	exon4	c.C488T	p.S163L	.	.	.
RRP36	88745	broad.mit.edu	36	6	43100771	43100771	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033112	exon2	c.A201C	p.Q67H	.	.	.
RRP36	88745	broad.mit.edu	36	6	43101012	43101012	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033112	exon3	c.A312G	p.P104P	.	.	.
PTK7	5754	broad.mit.edu	36	6	43217394	43217394	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152880	exon10	c.C1509T	p.S503S	.	.	.
PTK7	5754	broad.mit.edu	36	6	43235579	43235579	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152880	exon18	c.C2829A	p.F943L	.	.	.
CUL9	23113	broad.mit.edu	36	6	43272492	43272492	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015089	exon11	c.G2717T	p.R906I	.	.	.
TTBK1	84630	broad.mit.edu	36	6	43329027	43329027	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032538	exon4	c.T277C	p.F93L	.	.	.
TTBK1	84630	broad.mit.edu	36	6	43330798	43330798	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032538	exon7	c.C610T	p.R204C	.	.	.
TTBK1	84630	broad.mit.edu	36	6	43331497	43331497	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032538	exon9	c.G786A	p.K262K	.	.	.
SLC22A7	10864	broad.mit.edu	36	6	43374446	43374446	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006672	exon1	c.C372A	p.F124L	.	.	.
ZNF318	24149	broad.mit.edu	36	6	43433255	43433255	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014345	exon3	c.G775T	p.G259C	.	.	.
XPO5	57510	broad.mit.edu	36	6	43629105	43629105	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020750	exon14	c.C1555T	p.R519X	.	.	.
POLH	5429	broad.mit.edu	36	6	43689479	43689479	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006502	exon11	c.C1349A	p.S450Y	.	.	.
RSPH9	221421	broad.mit.edu	36	6	43731394	43731394	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193341	exon3	c.C466T	p.R156W	.	.	.
RSPH9	221421	broad.mit.edu	36	6	43746513	43746513	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193341	exon6	c.G732T	p.E244D	.	.	.
MRPS18A	55168	broad.mit.edu	36	6	43750940	43750940	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018135	exon5	c.G423A	p.P141P	.	.	.
TMEM63B	55362	broad.mit.edu	36	6	44216055	44216055	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018426	exon9	c.C691T	p.R231C	.	.	.
CAPN11	11131	broad.mit.edu	36	6	44248711	44248711	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007058	exon6	c.G585T	p.K195N	.	.	.
HSP90AB1	3326	broad.mit.edu	36	6	44326254	44326254	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007355	exon6	c.G897T	p.E299D	.	.	.
HSP90AB1	3326	broad.mit.edu	36	6	44329302	44329302	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007355	exon12	c.G2164T	p.E722X	.	.	.
RUNX2	860	broad.mit.edu	36	6	45623019	45623019	+	Nonstop_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004348	exon7	c.G1523T	p.X508L	.	.	.
CLIC5	53405	broad.mit.edu	36	6	46030950	46030950	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016929	exon2	c.G73A	p.D25N	.	.	.
ENPP5	59084	broad.mit.edu	36	6	46243701	46243701	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021572	exon2	c.G258T	p.E86D	.	.	.
CYP39A1	51302	broad.mit.edu	36	6	46626087	46626087	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016593	exon12	c.G1385A	p.R462Q	.	.	.
PLA2G7	7941	broad.mit.edu	36	6	46780303	46780303	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001168357	exon12	c.C1279A	p.Q427K	.	.	.
GPR116	221395	broad.mit.edu	36	6	46931711	46931711	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098518	exon20	c.C3920A	p.S1307Y	.	.	.
GPR116	221395	broad.mit.edu	36	6	46936428	46936428	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001098518	exon16	c.A2362C	p.N788H	.	.	.
GPR116	221395	broad.mit.edu	36	6	46964075	46964075	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001098518	exon4	c.A284C	p.N95T	.	.	.
TNFRSF21	27242	broad.mit.edu	36	6	47308540	47308540	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014452	exon6	c.G1888A	p.E630K	.	.	.
GPR115	221393	broad.mit.edu	36	6	47789815	47789815	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153838	exon6	c.G875T	p.S292I	.	.	.
CDYL	9425	broad.mit.edu	36	6	4880845	4880845	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001143970	exon3	c.C393T	p.D131D	.	.	.
CDYL	9425	broad.mit.edu	36	6	4888785	4888785	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001143970	exon5	c.C732T	p.F244F	.	.	.
CDYL	9425	broad.mit.edu	36	6	4888888	4888888	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001143970	exon5	c.G835T	p.A279S	.	.	.
RPP40	10799	broad.mit.edu	36	6	4940409	4940409	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006638	exon8	c.C994T	p.R332X	.	.	.
MUT	4594	broad.mit.edu	36	6	49527344	49527344	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000255	exon6	c.G1126T	p.A376S	.	.	.
CRISP1	167	broad.mit.edu	36	6	49916595	49916595	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001131	exon6	c.C508A	p.L170I	.	.	.
DEFB114	245928	broad.mit.edu	36	6	50036092	50036092	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037499	exon2	c.C82T	p.R28C	.	.	.
TFAP2D	83741	broad.mit.edu	36	6	50826908	50826908	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172238	exon7	c.C1051A	p.L351I	.	.	.
TFAP2B	7021	broad.mit.edu	36	6	50899425	50899425	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003221	exon2	c.C428T	p.S143L	.	.	.
TFAP2B	7021	broad.mit.edu	36	6	50904298	50904298	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003221	exon3	c.A548T	p.E183V	.	.	.
TFAP2B	7021	broad.mit.edu	36	6	50911862	50911862	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003221	exon4	c.C731T	p.S244L	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51592078	51592078	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138694	exon67	c.G11985T	p.E3995D	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51631749	51631749	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138694	exon61	c.G11134A	p.A3712T	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51632439	51632439	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138694	exon61	c.C10444T	p.R3482C	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51748596	51748596	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_170724	exon54	c.G8523T	p.M2841I	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51748657	51748657	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170724	exon54	c.A8462G	p.E2821G	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51820604	51820604	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170724	exon50	c.C8035A	p.L2679I	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51840746	51840746	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170724	exon48	c.G7607T	p.R2536I	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51843384	51843384	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170724	exon47	c.A7363G	p.M2455V	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51885229	51885229	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170724	exon38	c.G6226T	p.V2076F	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51983096	51983096	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170724	exon35	c.G5721T	p.E1907D	.	.	.
PKHD1	5314	broad.mit.edu	36	6	52026839	52026839	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170724	exon20	c.G1920T	p.K640N	.	.	.
PKHD1	5314	broad.mit.edu	36	6	52037739	52037739	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170724	exon13	c.G949T	p.D317Y	.	.	.
MCM3	4172	broad.mit.edu	36	6	52249171	52249171	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002388	exon9	c.G1228T	p.E410X	.	.	.
MCM3	4172	broad.mit.edu	36	6	52254921	52254921	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002388	exon4	c.C412T	p.R138C	.	.	.
EFHC1	114327	broad.mit.edu	36	6	52411178	52411178	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018100	exon3	c.G403T	p.E135X	.	.	.
EFHC1	114327	broad.mit.edu	36	6	52426863	52426863	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018100	exon5	c.C735A	p.F245L	.	.	.
EFHC1	114327	broad.mit.edu	36	6	52426954	52426954	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018100	exon5	c.C826T	p.R276X	.	.	.
TRAM2	9697	broad.mit.edu	36	6	52508581	52508581	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012288	exon2	c.T143G	p.L48R	.	.	.
GSTA3	2940	broad.mit.edu	36	6	52876444	52876444	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000847	exon3	c.A128C	p.K43T	.	.	.
ICK	22858	broad.mit.edu	36	6	52984627	52984627	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016513	exon12	c.G1391T	p.G464V	.	.	.
FBXO9	26268	broad.mit.edu	36	6	53066655	53066655	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012347	exon10	c.C1003A	p.L335I	.	.	.
LRRC1	55227	broad.mit.edu	36	6	53877192	53877192	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018214	exon10	c.A963C	p.R321S	.	.	.
TINAG	27283	broad.mit.edu	36	6	54281325	54281325	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014464	exon1	c.G18T	p.K6N	.	.	.
TINAG	27283	broad.mit.edu	36	6	54362583	54362583	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014464	exon11	c.G1332T	p.E444D	.	.	.
FAM83B	222584	broad.mit.edu	36	6	54900278	54900278	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010872	exon4	c.G623A	p.R208Q	.	.	.
FAM83B	222584	broad.mit.edu	36	6	54913848	54913848	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010872	exon5	c.C2120A	p.S707Y	.	.	.
FAM83B	222584	broad.mit.edu	36	6	54914466	54914466	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010872	exon5	c.C2738A	p.T913N	.	.	.
HCRTR2	3062	broad.mit.edu	36	6	55147539	55147539	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001526	exon1	c.C195T	p.F65F	.	.	.
HCRTR2	3062	broad.mit.edu	36	6	55221559	55221559	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001526	exon2	c.G387T	p.V129V	.	.	.
GFRAL	389400	broad.mit.edu	36	6	55371962	55371962	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207410	exon7	c.A978C	p.K326N	.	.	.
HMGCLL1	54511	broad.mit.edu	36	6	55408492	55408492	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019036	exon10	c.C1040T	p.A347V	.	.	.
HMGCLL1	54511	broad.mit.edu	36	6	55468240	55468240	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019036	exon8	c.C821T	p.A274V	.	.	.
BMP5	653	broad.mit.edu	36	6	55746856	55746856	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021073	exon4	c.G977A	p.R326H	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56143569	56143569	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030820	exon5	c.G863T	p.R288I	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56152428	56152428	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030820	exon3	c.G547A	p.A183T	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56152577	56152577	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030820	exon3	c.G398A	p.R133Q	.	.	.
DST	667	broad.mit.edu	36	6	56465058	56465058	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015548	exon66	c.C12814T	p.R4272X	.	.	.
DST	667	broad.mit.edu	36	6	56470756	56470756	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015548	exon62	c.G12082T	p.A4028S	.	.	.
DST	667	broad.mit.edu	36	6	56524999	56524999	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015548	exon42	c.C8681A	p.S2894X	.	.	.
DST	667	broad.mit.edu	36	6	56525355	56525355	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015548	exon42	c.C8325T	p.F2775F	.	.	.
DST	667	broad.mit.edu	36	6	56526017	56526017	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015548	exon42	c.C7663A	p.L2555I	.	.	.
DST	667	broad.mit.edu	36	6	56526176	56526176	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015548	exon42	c.T7504G	p.L2502V	.	.	.
DST	667	broad.mit.edu	36	6	56551593	56551593	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015548	exon31	c.G5136A	p.K1712K	.	.	.
DST	667	broad.mit.edu	36	6	56588672	56588672	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001723	exon24	c.C7552T	p.R2518X	.	.	.
DST	667	broad.mit.edu	36	6	56589617	56589617	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001723	exon24	c.G6607A	p.E2203K	.	.	.
DST	667	broad.mit.edu	36	6	56591383	56591383	+	Intron	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001723	exon23	c.T5408G	p.L1803R	.	.	.
DST	667	broad.mit.edu	36	6	56607591	56607591	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015548	exon11	c.G1695A	p.P565P	.	.	.
DST	667	broad.mit.edu	36	6	56613316	56613316	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015548	exon4	c.T463C	p.S155P	.	.	.
BEND6	221336	broad.mit.edu	36	6	56987919	56987919	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152731	exon4	c.G328T	p.E110X	.	.	.
KIAA1586	57691	broad.mit.edu	36	6	57026148	57026148	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020931	exon4	c.G892T	p.E298X	.	.	.
KIAA1586	57691	broad.mit.edu	36	6	57026585	57026585	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020931	exon4	c.T1329C	p.F443F	.	.	.
ZNF451	26036	broad.mit.edu	36	6	57114198	57114198	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015555	exon8	c.G842T	p.S281I	.	.	.
RAB23	51715	broad.mit.edu	36	6	57183055	57183055	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016277	exon2	c.G83A	p.R28Q	.	.	.
PRIM2	5558	broad.mit.edu	36	6	57291323	57291323	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000947	exon2	c.G121T	p.E41X	.	.	.
PRIM2	5558	broad.mit.edu	36	6	57580379	57580379	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000947	exon12	c.C1209A	p.I403I	.	.	.
NRN1	51299	broad.mit.edu	36	6	5944313	5944313	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016588	exon3	c.C324T	p.F108F	.	.	.
KHDRBS2	202559	broad.mit.edu	36	6	62746015	62746015	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152688	exon4	c.T398C	p.V133A	.	.	.
PTP4A1	7803	broad.mit.edu	36	6	64346376	64346376	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003463	exon3	c.G181T	p.E61X	.	.	.
PHF3	23469	broad.mit.edu	36	6	64459683	64459683	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015153	exon4	c.G2287T	p.E763X	.	.	.
PHF3	23469	broad.mit.edu	36	6	64479485	64479485	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015153	exon15	c.C4042T	p.R1348C	.	.	.
PHF3	23469	broad.mit.edu	36	6	64480558	64480558	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015153	exon15	c.G5115T	p.E1705D	.	.	.
EYS	346007	broad.mit.edu	36	6	66261866	66261866	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198283	exon3	c.C159A	p.F53L	.	.	.
BAI3	577	broad.mit.edu	36	6	69722743	69722743	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001704	exon7	c.C1302T	p.G434G	.	.	.
BAI3	577	broad.mit.edu	36	6	70105545	70105545	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001704	exon25	c.C3205A	p.H1069N	.	.	.
BAI3	577	broad.mit.edu	36	6	70149522	70149522	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001704	exon31	c.C4354T	p.R1452W	.	.	.
LMBRD1	55788	broad.mit.edu	36	6	70468071	70468071	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018368	exon11	c.G1068A	p.L356L	.	.	.
COL19A1	1310	broad.mit.edu	36	6	70904345	70904345	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001858	exon19	c.A1431G	p.G477G	.	.	.
FAM135A	57579	broad.mit.edu	36	6	71292263	71292263	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001162529	exon13	c.G2755T	p.D919Y	.	.	.
SMAP1	60682	broad.mit.edu	36	6	71521471	71521471	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001044305	exon3	c.G320A	p.R107Q	.	.	.
RREB1	6239	broad.mit.edu	36	6	7176541	7176541	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001003700	exon10	c.G3210T	p.Q1070H	.	.	.
OGFRL1	79627	broad.mit.edu	36	6	72067924	72067924	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024576	exon7	c.G807T	p.E269D	.	.	.
OGFRL1	79627	broad.mit.edu	36	6	72068114	72068114	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024576	exon7	c.G997A	p.A333T	.	.	.
OGFRL1	79627	broad.mit.edu	36	6	72068396	72068396	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024576	exon7	c.G1279A	p.E427K	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73017350	73017350	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001168409	exon9	c.A557C	p.K186T	.	.	.
CAGE1	285782	broad.mit.edu	36	6	7319036	7319036	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_205864	exon4	c.G607T	p.E203X	.	.	.
RIOK1	83732	broad.mit.edu	36	6	7348053	7348053	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031480	exon8	c.C691T	p.R231C	.	.	.
C6orf150	115004	broad.mit.edu	36	6	74191736	74191736	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138441	exon5	c.G1504T	p.E502X	.	.	.
SLC17A5	26503	broad.mit.edu	36	6	74381780	74381780	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012434	exon8	c.C1090T	p.R364C	.	.	.
CD109	135228	broad.mit.edu	36	6	74578685	74578685	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133493	exon29	c.G3739A	p.A1247T	.	.	.
CD109	135228	broad.mit.edu	36	6	74584943	74584943	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133493	exon31	c.A4023G	p.E1341E	.	.	.
DSP	1832	broad.mit.edu	36	6	7526640	7526640	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004415	exon23	c.G5218A	p.E1740K	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75875529	75875529	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004370	exon52	c.G8025T	p.K2675N	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75891629	75891629	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004370	exon40	c.G6541A	p.D2181N	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75918820	75918820	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004370	exon18	c.A3664C	p.I1222L	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75922796	75922796	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004370	exon15	c.G3147A	p.S1049S	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75932198	75932198	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004370	exon14	c.G2728T	p.D910Y	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75944186	75944186	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004370	exon12	c.C2350A	p.P784T	.	.	.
FILIP1	27145	broad.mit.edu	36	6	76079793	76079793	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015687	exon5	c.G2475A	p.R825R	.	.	.
FILIP1	27145	broad.mit.edu	36	6	76080102	76080102	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015687	exon5	c.C2166T	p.A722A	.	.	.
SENP6	26054	broad.mit.edu	36	6	76433198	76433198	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015571	exon10	c.G1045T	p.E349X	.	.	.
MYO6	4646	broad.mit.edu	36	6	76595045	76595045	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004999	exon4	c.A256C	p.I86L	.	.	.
MYO6	4646	broad.mit.edu	36	6	76596882	76596882	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004999	exon5	c.G291T	p.V97V	.	.	.
MYO6	4646	broad.mit.edu	36	6	76599372	76599372	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004999	exon6	c.A485C	p.K162T	.	.	.
MYO6	4646	broad.mit.edu	36	6	76646316	76646316	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004999	exon21	c.G2137T	p.E713X	.	.	.
IMPG1	3617	broad.mit.edu	36	6	76717039	76717039	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001563	exon13	c.C1784A	p.S595Y	.	.	.
HTR1B	3351	broad.mit.edu	36	6	78229065	78229065	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000863	exon1	c.G775A	p.D259N	.	.	.
TXNDC5	81567	broad.mit.edu	36	6	7828384	7828384	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030810	exon10	c.G1291A	p.E431K	.	.	.
PHIP	55023	broad.mit.edu	36	6	79712483	79712483	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017934	exon38	c.G4584T	p.K1528N	.	.	.
PHIP	55023	broad.mit.edu	36	6	79737289	79737289	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017934	exon25	c.C2925T	p.V975V	.	.	.
PHIP	55023	broad.mit.edu	36	6	79785539	79785539	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017934	exon10	c.C980A	p.S327Y	.	.	.
LCA5	167691	broad.mit.edu	36	6	80279936	80279936	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181714	exon4	c.G432T	p.E144D	.	.	.
TTK	7272	broad.mit.edu	36	6	80774410	80774410	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001166691	exon3	c.A305C	p.K102T	.	.	.
TTK	7272	broad.mit.edu	36	6	80774879	80774879	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166691	exon4	c.G420T	p.K140N	.	.	.
TTK	7272	broad.mit.edu	36	6	80794438	80794438	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166691	exon13	c.A1509C	p.Q503H	.	.	.
TTK	7272	broad.mit.edu	36	6	80801517	80801517	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166691	exon15	c.G1708A	p.E570K	.	.	.
IBTK	25998	broad.mit.edu	36	6	82984471	82984471	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015525	exon10	c.C1351A	p.L451I	.	.	.
DOPEY1	23033	broad.mit.edu	36	6	83875350	83875350	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015018	exon5	c.C323T	p.S108F	.	.	.
DOPEY1	23033	broad.mit.edu	36	6	83904653	83904653	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015018	exon21	c.C4173T	p.I1391I	.	.	.
RWDD2A	112611	broad.mit.edu	36	6	83962553	83962553	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033411	exon3	c.C722A	p.S241Y	.	.	.
ME1	4199	broad.mit.edu	36	6	83978459	83978459	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002395	exon14	c.G1622A	p.R541H	.	.	.
PRSS35	167681	broad.mit.edu	36	6	84290261	84290261	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001170423	exon3	c.G382A	p.D128N	.	.	.
PRSS35	167681	broad.mit.edu	36	6	84290404	84290404	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001170423	exon3	c.G525T	p.K175N	.	.	.
PRSS35	167681	broad.mit.edu	36	6	84290773	84290773	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001170423	exon3	c.G894A	p.T298T	.	.	.
SNAP91	9892	broad.mit.edu	36	6	84360904	84360904	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014841	exon16	c.C1340A	p.S447Y	.	.	.
SNAP91	9892	broad.mit.edu	36	6	84431954	84431954	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014841	exon3	c.C196T	p.R66W	.	.	.
CYB5R4	51167	broad.mit.edu	36	6	84721854	84721854	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016230	exon15	c.C1465A	p.L489I	.	.	.
KIAA1009	22832	broad.mit.edu	36	6	84916046	84916046	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014895	exon24	c.C3725A	p.S1242Y	.	.	.
KIAA1009	22832	broad.mit.edu	36	6	84929637	84929637	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014895	exon19	c.C2457T	p.F819F	.	.	.
KIAA1009	22832	broad.mit.edu	36	6	84941182	84941182	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014895	exon15	c.T2008G	p.Y670D	.	.	.
KIAA1009	22832	broad.mit.edu	36	6	84982264	84982264	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014895	exon4	c.C268A	p.L90I	.	.	.
KIAA1009	22832	broad.mit.edu	36	6	84992776	84992776	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014895	exon2	c.G55T	p.E19X	.	.	.
TBX18	9096	broad.mit.edu	36	6	85523289	85523289	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080508	exon4	c.C617T	p.S206L	.	.	.
NT5E	4907	broad.mit.edu	36	6	86251703	86251703	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002526	exon4	c.G783A	p.G261G	NT5E,central_nervous_system,brain,Substitution - Missense,+1	.	.
SNX14	57231	broad.mit.edu	36	6	86292566	86292566	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020468	exon18	c.C1945A	p.L649I	.	.	.
SNX14	57231	broad.mit.edu	36	6	86309669	86309669	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020468	exon12	c.C1207A	p.L403I	.	.	.
SYNCRIP	10492	broad.mit.edu	36	6	86390461	86390461	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001159673	exon6	c.A461C	p.K154T	.	.	.
SYNCRIP	10492	broad.mit.edu	36	6	86406951	86406951	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001159677	exon3	c.G199T	p.E67X	.	.	.
HTR1E	3354	broad.mit.edu	36	6	87782023	87782023	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000865	exon2	c.C252A	p.V84V	.	.	.
HTR1E	3354	broad.mit.edu	36	6	87782781	87782781	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000865	exon2	c.C1010A	p.S337Y	.	.	.
ZNF292	23036	broad.mit.edu	36	6	87999779	87999779	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015021	exon5	c.T556G	p.F186V	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88022144	88022144	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015021	exon8	c.A2078C	p.K693T	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88023395	88023395	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015021	exon8	c.A3329G	p.N1110S	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88026444	88026444	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015021	exon8	c.G6378A	p.T2126T	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88027012	88027012	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015021	exon8	c.C6946T	p.R2316W	.	.	.
C6orf162	57150	broad.mit.edu	36	6	88106631	88106631	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042493	exon4	c.G214T	p.E72X	.	.	.
C6orf165	154313	broad.mit.edu	36	6	88197529	88197529	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031743	exon10	c.G1219A	p.A407T	.	.	.
SLC35A1	10559	broad.mit.edu	36	6	88243886	88243886	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006416	exon2	c.G104T	p.R35M	.	.	.
RARS2	57038	broad.mit.edu	36	6	88315039	88315039	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020320	exon6	c.C440A	p.S147Y	.	.	.
ORC3	23595	broad.mit.edu	36	6	88387795	88387795	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012381	exon10	c.C992A	p.S331Y	.	.	.
SPACA1	81833	broad.mit.edu	36	6	88824141	88824141	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030960	exon3	c.G358T	p.D120Y	.	.	.
SPACA1	81833	broad.mit.edu	36	6	88825959	88825959	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030960	exon5	c.G544A	p.E182K	.	.	.
CNR1	1268	broad.mit.edu	36	6	88910789	88910789	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160259	exon2	c.G924T	p.M308I	.	.	.
CNR1	1268	broad.mit.edu	36	6	88910969	88910969	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160259	exon2	c.C744T	p.A248A	.	.	.
GABRR1	2569	broad.mit.edu	36	6	89946814	89946814	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002042	exon9	c.C1062T	p.F354F	.	.	.
GABRR1	2569	broad.mit.edu	36	6	89983728	89983728	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002042	exon1	c.C33A	p.I11I	.	.	.
GABRR2	2570	broad.mit.edu	36	6	90034469	90034469	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002043	exon5	c.C653A	p.S218Y	.	.	.
ANKRD6	22881	broad.mit.edu	36	6	90372507	90372507	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014942	exon5	c.C381T	p.L127L	.	.	.
MDN1	23195	broad.mit.edu	36	6	90438708	90438708	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014611	exon82	c.T13726G	p.S4576A	.	.	.
MDN1	23195	broad.mit.edu	36	6	90451342	90451342	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014611	exon71	c.C11803T	p.R3935C	.	.	.
MDN1	23195	broad.mit.edu	36	6	90460543	90460543	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014611	exon62	c.C9852T	p.V3284V	.	.	.
MDN1	23195	broad.mit.edu	36	6	90462845	90462845	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014611	exon60	c.C9338T	p.S3113L	.	.	.
MDN1	23195	broad.mit.edu	36	6	90478617	90478617	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014611	exon49	c.G7510A	p.E2504K	.	.	.
MDN1	23195	broad.mit.edu	36	6	90497298	90497298	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014611	exon35	c.A5008G	p.K1670E	.	.	.
MDN1	23195	broad.mit.edu	36	6	90538036	90538036	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014611	exon15	c.G2109T	p.M703I	.	.	.
MDN1	23195	broad.mit.edu	36	6	90560581	90560581	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014611	exon4	c.G621T	p.K207N	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90628636	90628636	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001137667	exon7	c.G487T	p.D163Y	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90629057	90629057	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001137667	exon7	c.C908T	p.S303L	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90634913	90634913	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001137667	exon8	c.C5183A	p.S1728Y	.	.	.
GJA10	84694	broad.mit.edu	36	6	90661372	90661372	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032602	exon1	c.G464A	p.R155H	.	.	.
GJA10	84694	broad.mit.edu	36	6	90662109	90662109	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032602	exon1	c.G1201T	p.D401Y	.	.	.
GJA10	84694	broad.mit.edu	36	6	90662229	90662229	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032602	exon1	c.C1321T	p.R441X	.	.	.
MAP3K7	6885	broad.mit.edu	36	6	91313711	91313711	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145333	exon11	c.C1197T	p.I399I	.	.	.
MAP3K7	6885	broad.mit.edu	36	6	91314522	91314522	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145333	exon10	c.G1045T	p.E349X	.	.	.
MAP3K7	6885	broad.mit.edu	36	6	91338171	91338171	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145333	exon2	c.A197G	p.E66G	.	.	.
EPHA7	2045	broad.mit.edu	36	6	94013274	94013274	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004440	exon15	c.C2683T	p.R895X	.	.	.
FUT9	10690	broad.mit.edu	36	6	96758409	96758409	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006581	exon3	c.G657A	p.G219G	.	.	.
KIAA0776	23376	broad.mit.edu	36	6	97097585	97097585	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015323	exon12	c.T1374G	p.S458R	.	.	.
KIAA0776	23376	broad.mit.edu	36	6	97104364	97104364	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015323	exon15	c.G1786A	p.A596T	.	.	.
FHL5	9457	broad.mit.edu	36	6	97170362	97170362	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001170807	exon6	c.A848C	p.D283A	.	.	.
GPR63	81491	broad.mit.edu	36	6	97353083	97353083	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143957	exon3	c.C1246T	p.R416W	.	.	.
GPR63	81491	broad.mit.edu	36	6	97353622	97353622	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143957	exon3	c.A707C	p.N236T	.	.	.
KLHL32	114792	broad.mit.edu	36	6	97668674	97668674	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052904	exon7	c.C922T	p.R308W	.	.	.
C6orf167	253714	broad.mit.edu	36	6	97822577	97822577	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198468	exon8	c.G720A	p.Q240Q	.	.	.
POU3F2	5454	broad.mit.edu	36	6	99390440	99390440	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005604	exon1	c.C970T	p.L324L	.	.	.
POU3F2	5454	broad.mit.edu	36	6	99390514	99390514	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005604	exon1	c.C1044T	p.I348I	.	.	.
FBXL4	26235	broad.mit.edu	36	6	99430219	99430219	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012160	exon8	c.G1495T	p.E499X	.	.	.
C6orf168	84553	broad.mit.edu	36	6	99846373	99846373	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032511	exon5	c.G868A	p.A290T	.	.	.
C6orf168	84553	broad.mit.edu	36	6	99897605	99897605	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032511	exon2	c.G292A	p.D98N	.	.	.
SFRS18	25957	broad.mit.edu	36	6	99955810	99955810	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015491	exon11	c.T1745A	p.I582K	.	.	.
MYH13	8735	broad.mit.edu	36	17	10160034	10160034	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003802	exon28	c.G3772T	p.D1258Y	.	.	.
MYH13	8735	broad.mit.edu	36	17	10162966	10162966	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003802	exon27	c.G3604T	p.D1202Y	.	.	.
MYH13	8735	broad.mit.edu	36	17	10171993	10171993	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003802	exon22	c.G2606A	p.R869Q	.	.	.
MYH13	8735	broad.mit.edu	36	17	10184430	10184430	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003802	exon17	c.A1908G	p.G636G	.	.	.
MYH13	8735	broad.mit.edu	36	17	10198796	10198796	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003802	exon11	c.G931A	p.D311N	.	.	.
MYH8	4626	broad.mit.edu	36	17	10239426	10239426	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002472	exon34	c.G4711T	p.V1571F	.	.	.
MYH8	4626	broad.mit.edu	36	17	10245090	10245090	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002472	exon25	c.A3252C	p.E1084D	.	.	.
MYH8	4626	broad.mit.edu	36	17	10245199	10245199	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002472	exon25	c.G3143A	p.R1048Q	.	.	.
MYH4	4622	broad.mit.edu	36	17	10298662	10298662	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017533	exon22	c.G2626T	p.E876X	.	.	.
MYH1	4619	broad.mit.edu	36	17	10339249	10339249	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005963	exon36	c.G5280T	p.K1760N	.	.	.
MYH1	4619	broad.mit.edu	36	17	10345434	10345434	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005963	exon27	c.G3456T	p.E1152D	.	.	.
MYH1	4619	broad.mit.edu	36	17	10346864	10346864	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005963	exon24	c.G3027T	p.Q1009H	.	.	.
MYH1	4619	broad.mit.edu	36	17	10347117	10347117	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005963	exon23	c.G2865T	p.K955N	.	.	.
MYH1	4619	broad.mit.edu	36	17	10358930	10358930	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005963	exon6	c.G513T	p.E171D	.	.	.
MYH1	4619	broad.mit.edu	36	17	10360492	10360492	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005963	exon3	c.G193A	p.E65K	.	.	.
MYH2	4620	broad.mit.edu	36	17	10367827	10367827	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001100112	exon36	c.G5275T	p.E1759X	.	.	.
MYH2	4620	broad.mit.edu	36	17	10373489	10373489	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001100112	exon25	c.G3152A	p.R1051H	.	.	.
MYH2	4620	broad.mit.edu	36	17	10381712	10381712	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001100112	exon15	c.G1582A	p.E528K	.	.	.
MYH2	4620	broad.mit.edu	36	17	10384067	10384067	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001100112	exon12	c.C1050A	p.V350V	.	.	.
MYH3	4621	broad.mit.edu	36	17	10478101	10478101	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002470	exon31	c.G4480T	p.D1494Y	.	.	.
MYH3	4621	broad.mit.edu	36	17	10482255	10482255	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002470	exon26	c.G3559A	p.E1187K	.	.	.
MYH3	4621	broad.mit.edu	36	17	10484475	10484475	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002470	exon20	c.G2326T	p.E776X	.	.	.
MYH3	4621	broad.mit.edu	36	17	10491455	10491455	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002470	exon8	c.G749A	p.R250Q	.	.	.
SCO1	6341	broad.mit.edu	36	17	10535930	10535930	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004589	exon4	c.C639T	p.I213I	.	.	.
PIRT	644139	broad.mit.edu	36	17	10669502	10669502	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001101387	exon2	c.C186T	p.G62G	.	.	.
TUSC5	286753	broad.mit.edu	36	17	1145539	1145539	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_172367	exon2	c.G392A	p.R131Q	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11476671	11476671	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001372	exon8	c.G1561T	p.D521Y	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11537934	11537934	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001372	exon21	c.G4639A	p.D1547N	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11588970	11588970	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001372	exon31	c.G6243T	p.K2081N	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11666074	11666074	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001372	exon46	c.C8820A	p.F2940L	.	.	.
ZNF18	7566	broad.mit.edu	36	17	11822221	11822221	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144680	exon9	c.C1428A	p.F476L	.	.	.
MAP2K4	6416	broad.mit.edu	36	17	11973249	11973249	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003010	exon9	c.C960T	p.V320V	.	.	.
MYOCD	93649	broad.mit.edu	36	17	12567018	12567018	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146312	exon5	c.C383A	p.P128H	.	.	.
MYOCD	93649	broad.mit.edu	36	17	12607227	12607227	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146312	exon14	c.A2502G	p.E834E	.	.	.
MYOCD	93649	broad.mit.edu	36	17	12607585	12607585	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146312	exon14	c.G2860A	p.A954T	.	.	.
ARHGAP44	9912	broad.mit.edu	36	17	12760019	12760019	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014859	exon5	c.G353T	p.R118I	.	.	.
ARHGAP44	9912	broad.mit.edu	36	17	12800726	12800726	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014859	exon15	c.C1280A	p.S427X	.	.	.
INPP5K	51763	broad.mit.edu	36	17	1347998	1347998	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016532	exon8	c.C945T	p.S315S	SKIP,breast,NS,Substitution - Missense,-1	.	.
SLC43A2	124935	broad.mit.edu	36	17	1466758	1466758	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152346	exon3	c.G216T	p.V72V	.	.	.
PRPF8	10594	broad.mit.edu	36	17	1531967	1531967	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006445	exon5	c.G550T	p.D184Y	.	.	.
CDRT1	374286	broad.mit.edu	36	17	15433205	15433205	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006382	exon12	c.G2068T	p.E690X	.	.	.
ZNF286A	57335	broad.mit.edu	36	17	15550515	15550515	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130842	exon4	c.G216T	p.E72D	.	.	.
ZNF286A	57335	broad.mit.edu	36	17	15560467	15560467	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130842	exon6	c.G704T	p.R235I	.	.	.
ZNF286A	57335	broad.mit.edu	36	17	15560635	15560635	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130842	exon6	c.G872T	p.R291I	.	.	.
ZNF286A	57335	broad.mit.edu	36	17	15561052	15561052	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130842	exon6	c.G1289T	p.R430I	.	.	.
TBC1D26	353149	broad.mit.edu	36	17	15582323	15582323	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178571	exon7	c.C284A	p.S95Y	.	.	.
NCOR1	9611	broad.mit.edu	36	17	15906150	15906150	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190440	exon35	c.G5429A	p.R1810Q	.	.	.
NCOR1	9611	broad.mit.edu	36	17	15924509	15924509	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001190440	exon24	c.G3386A	p.R1129Q	.	.	.
NCOR1	9611	broad.mit.edu	36	17	15924659	15924659	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190440	exon23	c.A3333C	p.E1111D	.	.	.
NCOR1	9611	broad.mit.edu	36	17	15983217	15983217	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190440	exon11	c.G1182T	p.E394D	.	.	.
SERPINF1	5176	broad.mit.edu	36	17	1622013	1622013	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002615	exon5	c.G537T	p.E179D	.	.	.
TRPV2	51393	broad.mit.edu	36	17	16264171	16264171	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016113	exon3	c.G218A	p.R73Q	.	.	.
ZNF287	57336	broad.mit.edu	36	17	16397288	16397288	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020653	exon6	c.C893A	p.S298X	.	.	.
ZNF624	57547	broad.mit.edu	36	17	16466488	16466488	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020787	exon6	c.T2437G	p.C813G	.	.	.
CCDC144A	9720	broad.mit.edu	36	17	16555757	16555757	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014695	exon6	c.G1618T	p.E540X	.	.	.
CCDC144A	9720	broad.mit.edu	36	17	16578810	16578810	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014695	exon12	c.G2500T	p.E834X	.	.	.
COPS3	8533	broad.mit.edu	36	17	17108874	17108874	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003653	exon6	c.G588T	p.K196N	.	.	.
COPS3	8533	broad.mit.edu	36	17	17111987	17111987	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003653	exon5	c.A378C	p.Q126H	.	.	.
PEMT	10400	broad.mit.edu	36	17	17353574	17353574	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_148172	exon5	c.C477T	p.F159F	.	.	.
RAI1	10743	broad.mit.edu	36	17	17638732	17638732	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030665	exon3	c.A1745C	p.D582A	.	.	.
MYO15A	51168	broad.mit.edu	36	17	17975310	17975310	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016239	exon8	c.C4071T	p.F1357F	.	.	.
MYO15A	51168	broad.mit.edu	36	17	17980470	17980470	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016239	exon13	c.G4611T	p.E1537D	.	.	.
MYO15A	51168	broad.mit.edu	36	17	17986236	17986236	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016239	exon23	c.G5768A	p.R1923H	.	.	.
MYO15A	51168	broad.mit.edu	36	17	17995175	17995175	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016239	exon38	c.G7500A	p.P2500P	.	.	.
FLII	2314	broad.mit.edu	36	17	18095782	18095782	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002018	exon12	c.C1320G	p.D440E	.	.	.
LGALS9C	654346	broad.mit.edu	36	17	18336864	18336864	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040078	exon10	c.G890A	p.R297Q	.	.	.
FAM18B1	51030	broad.mit.edu	36	17	18641670	18641670	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016078	exon4	c.A294G	p.E98E	.	.	.
SLC5A10	125206	broad.mit.edu	36	17	18864464	18864464	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152351	exon15	c.G1834A	p.A612T	.	.	.
MAPK7	5598	broad.mit.edu	36	17	19223725	19223725	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139033	exon3	c.C270T	p.F90F	.	.	.
SLC47A1	55244	broad.mit.edu	36	17	19421381	19421381	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018242	exon17	c.C1636T	p.R546X	.	.	.
SLC47A2	146802	broad.mit.edu	36	17	19550569	19550569	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001099646	exon9	c.C825T	p.I275I	.	.	.
AKAP10	11216	broad.mit.edu	36	17	19802104	19802104	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007202	exon4	c.G692T	p.S231I	.	.	.
SPECC1	92521	broad.mit.edu	36	17	20048530	20048530	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001033555	exon2	c.G333T	p.K111N	.	.	.
CCDC144NL	339184	broad.mit.edu	36	17	20739738	20739738	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004306	exon1	c.A188G	p.K63R	.	.	.
TMEM11	8834	broad.mit.edu	36	17	21042246	21042246	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003876	exon2	c.G562A	p.E188K	.	.	.
MAP2K3	5606	broad.mit.edu	36	17	21156146	21156146	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002756	exon10	c.G787A	p.D263N	.	.	.
TSR1	55720	broad.mit.edu	36	17	2174243	2174243	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018128	exon15	c.G2412T	p.E804D	.	.	.
TSR1	55720	broad.mit.edu	36	17	2183685	2183685	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018128	exon6	c.G1057A	p.E353K	.	.	.
NOS2	4843	broad.mit.edu	36	17	23124353	23124353	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000625	exon13	c.G1520T	p.R507I	.	.	.
NOS2	4843	broad.mit.edu	36	17	23133228	23133228	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000625	exon7	c.G662A	p.R221Q	.	.	.
METT10D	79066	broad.mit.edu	36	17	2314381	2314381	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024086	exon6	c.G599A	p.R200Q	.	.	.
METT10D	79066	broad.mit.edu	36	17	2327871	2327871	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024086	exon3	c.G187T	p.D63Y	.	.	.
NLK	51701	broad.mit.edu	36	17	23473867	23473867	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016231	exon2	c.T570C	p.C190C	.	.	.
TNFAIP1	7126	broad.mit.edu	36	17	23693430	23693430	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021137	exon6	c.C549T	p.I183I	.	.	.
POLDIP2	26073	broad.mit.edu	36	17	23704927	23704927	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015584	exon4	c.G358A	p.A120T	.	.	.
VTN	7448	broad.mit.edu	36	17	23720700	23720700	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000638	exon3	c.G484A	p.D162N	.	.	.
SLC13A2	9058	broad.mit.edu	36	17	23841637	23841637	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145976	exon2	c.C141A	p.F47L	.	.	.
SLC13A2	9058	broad.mit.edu	36	17	23844725	23844725	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145976	exon6	c.G759T	p.K253N	.	.	.
SLC13A2	9058	broad.mit.edu	36	17	23844840	23844840	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145976	exon6	c.C874A	p.L292I	.	.	.
ALDOC	230	broad.mit.edu	36	17	23925235	23925235	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005165	exon7	c.G776A	p.R259H	.	.	.
SPAG5	10615	broad.mit.edu	36	17	23936467	23936467	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006461	exon9	c.G1950T	p.L650L	.	.	.
KIAA0100	9703	broad.mit.edu	36	17	23971698	23971698	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014680	exon29	c.G5320T	p.D1774Y	.	.	.
KIAA0100	9703	broad.mit.edu	36	17	23982723	23982723	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014680	exon23	c.G4200T	p.E1400D	.	.	.
KIAA0100	9703	broad.mit.edu	36	17	23985693	23985693	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014680	exon16	c.A3039G	p.R1013R	.	.	.
SUPT6H	6830	broad.mit.edu	36	17	24026211	24026211	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003170	exon5	c.G442T	p.E148X	.	.	.
NEK8	284086	broad.mit.edu	36	17	24085213	24085213	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178170	exon2	c.C133T	p.R45W	.	.	.
C17orf63	55731	broad.mit.edu	36	17	24111001	24111001	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077498	exon3	c.G102T	p.M34I	.	.	.
SEZ6	124925	broad.mit.edu	36	17	24308616	24308616	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098635	exon12	c.C2370T	p.P790P	.	.	.
SEZ6	124925	broad.mit.edu	36	17	24311710	24311710	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098635	exon7	c.C1515A	p.F505L	.	.	.
MYO18A	399687	broad.mit.edu	36	17	24446143	24446143	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_203318	exon29	c.G4446T	p.E1482D	.	.	.
CRYBA1	1411	broad.mit.edu	36	17	24603259	24603259	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005208	exon4	c.G267A	p.E89E	.	.	.
NUFIP2	57532	broad.mit.edu	36	17	24637150	24637150	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020772	exon2	c.T1988C	p.V663A	.	.	.
NUFIP2	57532	broad.mit.edu	36	17	24638237	24638237	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020772	exon2	c.C901T	p.R301W	.	.	.
GIT1	28964	broad.mit.edu	36	17	24930130	24930130	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001085454	exon8	c.C764A	p.S255Y	.	.	.
EFCAB5	374786	broad.mit.edu	36	17	25385458	25385458	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145053	exon8	c.C961T	p.R321W	.	.	.
EFCAB5	374786	broad.mit.edu	36	17	25402309	25402309	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145053	exon9	c.C1080A	p.F360L	.	.	.
CCDC55	84081	broad.mit.edu	36	17	25535891	25535891	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032141	exon7	c.C750T	p.F250F	.	.	.
BLMH	642	broad.mit.edu	36	17	25623714	25623714	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000386	exon9	c.A1019G	p.D340G	.	.	.
TMIGD1	388364	broad.mit.edu	36	17	25676238	25676238	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_206832	exon4	c.T362C	p.F121S	.	.	.
CPD	1362	broad.mit.edu	36	17	25774810	25774810	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199775	exon6	c.G1077T	p.M359I	.	.	.
GOSR1	9527	broad.mit.edu	36	17	25841354	25841354	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007024	exon5	c.G238T	p.D80Y	.	.	.
CRLF3	51379	broad.mit.edu	36	17	26135564	26135564	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015986	exon8	c.G1096T	p.E366X	.	.	.
CRLF3	51379	broad.mit.edu	36	17	26144792	26144792	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015986	exon5	c.G628T	p.D210Y	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26185788	26185788	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024857	exon2	c.C563A	p.S188Y	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26185963	26185963	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024857	exon2	c.A738G	p.A246A	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26219487	26219487	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024857	exon12	c.G3244T	p.D1082Y	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26220685	26220685	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024857	exon14	c.C3502A	p.L1168I	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26244510	26244510	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024857	exon21	c.G4513T	p.D1505Y	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26245226	26245226	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024857	exon21	c.C5229T	p.N1743N	.	.	.
NF1	4763	broad.mit.edu	36	17	26557441	26557442	+	Nonsense_Mutation	DNP	CG	TA	TA	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001128147	exon12	c.1318_1319TA	.	.	.	.
NF1	4763	broad.mit.edu	36	17	26612866	26612866	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000267	exon34	c.C4526A	p.A1509D	.	.	.
NF1	4763	broad.mit.edu	36	17	26616469	26616469	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000267	exon35	c.T4758G	p.Y1586X	.	.	.
UTP6	55813	broad.mit.edu	36	17	27216543	27216543	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018428	exon18	c.G1591T	p.E531X	.	.	.
UTP6	55813	broad.mit.edu	36	17	27237191	27237191	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018428	exon9	c.G624A	p.E208E	.	.	.
UTP6	55813	broad.mit.edu	36	17	27246112	27246112	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018428	exon3	c.G209T	p.R70I	.	.	.
LRRC37B	114659	broad.mit.edu	36	17	27398933	27398933	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052888	exon9	c.G2283T	p.M761I	.	.	.
RHBDL3	162494	broad.mit.edu	36	17	27649301	27649301	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138328	exon6	c.G746A	p.R249Q	.	.	.
RHBDL3	162494	broad.mit.edu	36	17	27667400	27667400	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138328	exon8	c.C919T	p.R307W	.	.	.
MYO1D	4642	broad.mit.edu	36	17	28118862	28118862	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015194	exon7	c.G736A	p.E246K	.	.	.
RAP1GAP2	23108	broad.mit.edu	36	17	2814065	2814065	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015085	exon7	c.G445A	p.E149K	.	.	.
RAP1GAP2	23108	broad.mit.edu	36	17	2830343	2830343	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015085	exon9	c.G609T	p.K203N	.	.	.
SPACA3	124912	broad.mit.edu	36	17	28346780	28346780	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173847	exon2	c.G275A	p.R92H	.	.	.
OR1D2	4991	broad.mit.edu	36	17	2942621	2942621	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002548	exon1	c.C420A	p.L140L	.	.	.
C17orf102	400591	broad.mit.edu	36	17	29928743	29928743	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207454	exon2	c.G420A	p.V140V	.	.	.
TMEM132E	124842	broad.mit.edu	36	17	29980297	29980297	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207313	exon5	c.C1029A	p.V343V	.	.	.
CCT6B	10693	broad.mit.edu	36	17	30312461	30312461	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001193529	exon1	c.T65G	p.V22G	.	.	.
LIG3	3980	broad.mit.edu	36	17	30334519	30334519	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013975	exon2	c.T382A	p.S128T	.	.	.
LIG3	3980	broad.mit.edu	36	17	30334608	30334608	+	Silent	SNP	C	T	T	rs61749869	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013975	exon2	c.C471T	p.I157I	.	.	.
RAD51L3	5892	broad.mit.edu	36	17	30452478	30452478	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002878	exon9	c.G758A	p.R253Q	.	.	.
SLFN11	91607	broad.mit.edu	36	17	30703623	30703623	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001104589	exon6	c.C2571A	p.F857L	.	.	.
SLFN11	91607	broad.mit.edu	36	17	30704000	30704000	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001104589	exon6	c.C2194T	p.R732C	.	.	.
SLFN11	91607	broad.mit.edu	36	17	30714460	30714460	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001104589	exon3	c.C480A	p.I160I	.	.	.
SLFN11	91607	broad.mit.edu	36	17	30714898	30714898	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001104589	exon3	c.C42T	p.Y14Y	.	.	.
SLFN12	55106	broad.mit.edu	36	17	30773368	30773368	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018042	exon2	c.G793A	p.E265K	.	.	.
SLFN13	146857	broad.mit.edu	36	17	30792766	30792766	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144682	exon5	c.G1851A	p.R617R	.	.	.
PEX12	5193	broad.mit.edu	36	17	30928311	30928311	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000286	exon2	c.G539A	p.R180Q	.	.	.
PEX12	5193	broad.mit.edu	36	17	30928578	30928578	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000286	exon2	c.G272T	p.R91I	.	.	.
AP2B1	163	broad.mit.edu	36	17	30978814	30978814	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001282	exon9	c.C1111T	p.R371X	.	.	.
GAS2L2	246176	broad.mit.edu	36	17	31097338	31097338	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139285	exon6	c.G1291A	p.D431N	.	.	.
C17orf66	256957	broad.mit.edu	36	17	31215626	31215626	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152781	exon5	c.C498A	p.F166L	.	.	.
MYO19	80179	broad.mit.edu	36	17	31943636	31943636	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001163735	exon11	c.C766T	p.P256S	.	.	.
GGNBP2	79893	broad.mit.edu	36	17	31997647	31997647	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024835	exon6	c.C560T	p.S187L	.	.	.
GGNBP2	79893	broad.mit.edu	36	17	32009828	32009828	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024835	exon8	c.G886T	p.E296X	.	.	.
GGNBP2	79893	broad.mit.edu	36	17	32015894	32015894	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024835	exon10	c.G1267A	p.D423N	.	.	.
OR1E1	8387	broad.mit.edu	36	17	3247645	3247645	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003553	exon1	c.G810T	p.K270N	.	.	.
ACACA	31	broad.mit.edu	36	17	32592855	32592855	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198834	exon42	c.C5302T	p.R1768C	.	.	.
ACACA	31	broad.mit.edu	36	17	32656102	32656102	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198834	exon27	c.G3398A	p.R1133H	.	.	.
DDX52	11056	broad.mit.edu	36	17	33058517	33058517	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007010	exon9	c.G1213T	p.E405X	.	.	.
HNF1B	6928	broad.mit.edu	36	17	33139099	33139099	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001165923	exon6	c.A1199C	p.N400T	.	.	.
ASPA	443	broad.mit.edu	36	17	3331753	3331753	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000049	exon2	c.C343A	p.L115I	.	.	.
ASPA	443	broad.mit.edu	36	17	3349115	3349115	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000049	exon6	c.C925T	p.R309C	.	.	.
GPR179	440435	broad.mit.edu	36	17	33736296	33736296	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004334	exon11	c.G6682T	p.D2228Y	.	.	.
GPR179	440435	broad.mit.edu	36	17	33737228	33737228	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004334	exon11	c.G5750T	p.R1917I	.	.	.
GPR179	440435	broad.mit.edu	36	17	33737962	33737962	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004334	exon11	c.A5016C	p.Q1672H	.	.	.
GPR179	440435	broad.mit.edu	36	17	33739246	33739246	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004334	exon11	c.C3732T	p.C1244C	.	.	.
GPR179	440435	broad.mit.edu	36	17	33740032	33740032	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004334	exon11	c.C2946T	p.S982S	.	.	.
GPR179	440435	broad.mit.edu	36	17	33746585	33746585	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004334	exon4	c.C1029T	p.F343F	.	.	.
PSMB3	5691	broad.mit.edu	36	17	34162976	34162976	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002795	exon2	c.G51T	p.K17N	.	.	.
TRPV1	7442	broad.mit.edu	36	17	3422279	3422279	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018727	exon14	c.C2117T	p.S706F	.	.	.
FBXO47	494188	broad.mit.edu	36	17	34371762	34371762	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008777	exon3	c.C246A	p.I82I	.	.	.
ERBB2	2064	broad.mit.edu	36	17	35119608	35119608	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005862	exon8	c.G501A	p.P167P	.	.	.
ERBB2	2064	broad.mit.edu	36	17	35134936	35134936	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005862	exon24	c.C2512T	p.R838W	.	.	.
GSDMB	55876	broad.mit.edu	36	17	35315718	35315718	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042471	exon8	c.A896G	p.D299G	.	.	.
GSDMA	284110	broad.mit.edu	36	17	35384084	35384084	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178171	exon9	c.G784T	p.E262X	.	.	.
P2RX5	5026	broad.mit.edu	36	17	3539637	3539637	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002561	exon7	c.G651A	p.L217L	.	.	.
MED24	9862	broad.mit.edu	36	17	35443232	35443232	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001079518	exon6	c.C524A	p.S175Y	.	.	.
CASC3	22794	broad.mit.edu	36	17	35551358	35551358	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007359	exon3	c.C269T	p.S90L	.	.	.
CDC6	990	broad.mit.edu	36	17	35710760	35710760	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001254	exon10	c.G1404T	p.L468F	.	.	.
ITGAE	3682	broad.mit.edu	36	17	3578162	3578162	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002208	exon25	c.G2962T	p.E988X	.	.	.
TOP2A	7153	broad.mit.edu	36	17	35809743	35809743	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001067	exon24	c.G3103T	p.E1035X	.	.	.
TOP2A	7153	broad.mit.edu	36	17	35822557	35822557	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001067	exon7	c.C769T	p.L257F	.	.	.
ITGAE	3682	broad.mit.edu	36	17	3595959	3595959	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002208	exon18	c.G2167A	p.A723T	.	.	.
CCR7	1236	broad.mit.edu	36	17	35965520	35965520	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001838	exon3	c.C137A	p.S46Y	.	.	.
KRT222	125113	broad.mit.edu	36	17	36069835	36069835	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152349	exon3	c.C376A	p.L126I	.	.	.
KRT24	192666	broad.mit.edu	36	17	36109308	36109308	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019016	exon6	c.C1275T	p.N425N	.	.	.
KRT24	192666	broad.mit.edu	36	17	36110975	36110975	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019016	exon3	c.G798T	p.E266D	.	.	.
KRT24	192666	broad.mit.edu	36	17	36113069	36113069	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019016	exon1	c.C403A	p.L135I	.	.	.
KRT27	342574	broad.mit.edu	36	17	36192164	36192164	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181537	exon1	c.C108T	p.C36C	.	.	.
KRT27	342574	broad.mit.edu	36	17	36192267	36192267	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181537	exon1	c.C5T	p.S2F	.	.	.
KRT10	3858	broad.mit.edu	36	17	36232004	36232004	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000421	exon1	c.C360T	p.G120G	.	.	.
KRT12	3859	broad.mit.edu	36	17	36272999	36272999	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000223	exon6	c.G1218T	p.E406D	.	.	.
KRT20	54474	broad.mit.edu	36	17	36294581	36294581	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019010	exon1	c.G383A	p.R128Q	.	.	.
KRT33B	3884	broad.mit.edu	36	17	36779224	36779224	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002279	exon1	c.G305T	p.S102I	.	.	.
KRT31	3881	broad.mit.edu	36	17	36807069	36807069	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002277	exon1	c.G249A	p.E83E	.	.	.
KRT37	8688	broad.mit.edu	36	17	36830714	36830714	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003770	exon7	c.G1292A	p.S431N	.	.	.
KRT35	3886	broad.mit.edu	36	17	36886889	36886889	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002280	exon7	c.G1313A	p.R438H	.	.	.
KRT35	3886	broad.mit.edu	36	17	36889137	36889137	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002280	exon3	c.G699T	p.K233N	.	.	.
KRT14	3861	broad.mit.edu	36	17	36996139	36996139	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000526	exon1	c.G474T	p.E158D	.	.	.
KRT14	3861	broad.mit.edu	36	17	36996243	36996243	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000526	exon1	c.G370A	p.D124N	.	.	.
LEPREL4	10609	broad.mit.edu	36	17	37220777	37220777	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006455	exon3	c.C651T	p.S217S	.	.	.
KLHL10	317719	broad.mit.edu	36	17	37255079	37255079	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152467	exon3	c.G860A	p.R287H	.	.	.
TTC25	83538	broad.mit.edu	36	17	37370868	37370868	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031421	exon11	c.G1668T	p.E556D	.	.	.
DNAJC7	7266	broad.mit.edu	36	17	37394970	37394970	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003315	exon7	c.A731G	p.E244G	.	.	.
DNAJC7	7266	broad.mit.edu	36	17	37406065	37406065	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003315	exon2	c.G127T	p.D43Y	.	.	.
GHDC	84514	broad.mit.edu	36	17	37598061	37598061	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032484	exon5	c.G613A	p.E205K	.	.	.
STAT5B	6777	broad.mit.edu	36	17	37607886	37607886	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012448	exon18	c.G2235T	p.Q745H	.	.	.
ATP6V0A1	535	broad.mit.edu	36	17	37875698	37875698	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130021	exon5	c.G359T	p.R120I	.	.	.
ATP2A3	489	broad.mit.edu	36	17	3791676	3791676	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_174955	exon13	c.G1567A	p.E523K	.	.	.
ATP2A3	489	broad.mit.edu	36	17	3793488	3793488	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174955	exon11	c.C1365T	p.F455F	.	.	.
NAGLU	4669	broad.mit.edu	36	17	37946621	37946621	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000263	exon5	c.G892T	p.E298X	.	.	.
COASY	80347	broad.mit.edu	36	17	37968234	37968234	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042529	exon2	c.C68T	p.A23V	.	.	.
CNTNAP1	8506	broad.mit.edu	36	17	38101100	38101100	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003632	exon19	c.C3028T	p.R1010C	.	.	.
EZH1	2145	broad.mit.edu	36	17	38117907	38117907	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001991	exon12	c.C1327T	p.R443X	.	.	.
BECN1	8678	broad.mit.edu	36	17	38221588	38221588	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003766	exon8	c.G694T	p.E232X	.	.	.
AOC3	8639	broad.mit.edu	36	17	38258020	38258020	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003734	exon1	c.A1134G	p.A378A	.	.	.
AOC3	8639	broad.mit.edu	36	17	38258233	38258233	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003734	exon1	c.G1347A	p.S449S	.	.	.
G6PC	2538	broad.mit.edu	36	17	38316630	38316630	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000151	exon5	c.C735T	p.C245C	.	.	.
BRCA1	672	broad.mit.edu	36	17	38499715	38499715	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007294	exon10	c.G1359T	p.E453D	.	.	.
ZZEF1	23140	broad.mit.edu	36	17	3869761	3869761	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015113	exon46	c.G7456A	p.E2486K	.	.	.
ZZEF1	23140	broad.mit.edu	36	17	3924201	3924201	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015113	exon24	c.C3677A	p.S1226Y	.	.	.
PPY	5539	broad.mit.edu	36	17	39374378	39374378	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002722	exon2	c.C171A	p.I57I	.	.	.
HDAC5	10014	broad.mit.edu	36	17	39511725	39511725	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001015053	exon25	c.G3130A	p.A1044T	.	.	.
UBTF	7343	broad.mit.edu	36	17	39644220	39644220	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001076683	exon10	c.G942T	p.K314N	.	.	.
UBTF	7343	broad.mit.edu	36	17	39648629	39648629	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001076683	exon5	c.G393A	p.A131A	.	.	.
ITGA2B	3674	broad.mit.edu	36	17	39817854	39817854	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000419	exon7	c.G787A	p.D263N	.	.	.
C17orf104	284071	broad.mit.edu	36	17	40099473	40099473	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145080	exon5	c.T668G	p.L223R	.	.	.
C17orf104	284071	broad.mit.edu	36	17	40100478	40100478	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145080	exon5	c.C1673T	p.S558F	.	.	.
EFTUD2	9343	broad.mit.edu	36	17	40285383	40285383	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004247	exon26	c.G2635A	p.D879N	.	.	.
CCDC103	388389	broad.mit.edu	36	17	40334540	40334540	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_213607	exon3	c.C270A	p.I90I	.	.	.
GFAP	2670	broad.mit.edu	36	17	40346183	40346183	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001131019	exon4	c.G760A	p.E254K	.	.	.
ANKFY1	51479	broad.mit.edu	36	17	4035063	4035063	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016376	exon12	c.C1498T	p.R500W	.	.	.
HEXIM2	124790	broad.mit.edu	36	17	40602386	40602386	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144608	exon4	c.G288A	p.S96S	.	.	.
FMNL1	752	broad.mit.edu	36	17	40671780	40671780	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005892	exon10	c.G961A	p.D321N	.	.	.
ARHGAP27	201176	broad.mit.edu	36	17	40837767	40837767	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199282	exon4	c.C289T	p.R97X	.	.	.
ANKFY1	51479	broad.mit.edu	36	17	4085933	4085933	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020740	exon3	c.G205A	p.D69N	.	.	.
CRHR1	1394	broad.mit.edu	36	17	41240212	41240212	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145147	exon2	c.C90T	p.C30C	.	.	.
CRHR1	1394	broad.mit.edu	36	17	41267874	41267874	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145147	exon12	c.T1091C	p.V364A	.	.	.
MAPT	4137	broad.mit.edu	36	17	41405116	41405116	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001123067	exon3	c.C189A	p.T63T	.	.	.
MAPT	4137	broad.mit.edu	36	17	41420245	41420245	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016834	exon4	c.C202T	p.R68C	.	.	.
MAPT	4137	broad.mit.edu	36	17	41423200	41423200	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016835	exon8	c.G1302A	p.E434E	.	.	.
KIAA1267	284058	broad.mit.edu	36	17	41471752	41471752	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015443	exon10	c.C2540T	p.S847L	.	.	.
WNT9B	7484	broad.mit.edu	36	17	42308980	42308980	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003396	exon4	c.G971A	p.S324N	.	.	.
GOSR2	9570	broad.mit.edu	36	17	42363525	42363525	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012511	exon3	c.G156T	p.E52D	.	.	.
CDC27	996	broad.mit.edu	36	17	42556280	42556280	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114091	exon17	c.G2224T	p.E742X	.	.	.
CDC27	996	broad.mit.edu	36	17	42561867	42561867	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001114091	exon16	c.A2069C	p.K690T	.	.	.
CDC27	996	broad.mit.edu	36	17	42569663	42569663	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001114091	exon14	c.C1785A	p.F595L	.	.	.
ITGB3	3690	broad.mit.edu	36	17	42715757	42715757	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000212	exon3	c.G204T	p.E68D	.	.	.
C17orf57	124989	broad.mit.edu	36	17	42780208	42780208	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152347	exon9	c.C553T	p.R185X	.	.	.
NPEPPS	9520	broad.mit.edu	36	17	43015191	43015191	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006310	exon5	c.G625A	p.D209N	.	.	.
TBX21	30009	broad.mit.edu	36	17	43177324	43177324	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013351	exon6	c.G1201T	p.A401S	.	.	.
OSBPL7	114881	broad.mit.edu	36	17	43246085	43246085	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145798	exon15	c.A1466C	p.K489T	.	.	.
CDK5RAP3	80279	broad.mit.edu	36	17	43407897	43407897	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_176096	exon7	c.G532T	p.E178X	.	.	.
SNX11	29916	broad.mit.edu	36	17	43551101	43551101	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013323	exon5	c.C267T	p.F89F	.	.	.
SNX11	29916	broad.mit.edu	36	17	43553698	43553698	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013323	exon7	c.G642T	p.E214D	.	.	.
HOXB1	3211	broad.mit.edu	36	17	43962953	43962953	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002144	exon1	c.G313T	p.E105X	.	.	.
HOXB3	3213	broad.mit.edu	36	17	43984593	43984593	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002146	exon3	c.G243T	p.E81D	.	.	.
HOXB4	3214	broad.mit.edu	36	17	44009194	44009194	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024015	exon2	c.G645T	p.M215I	.	.	.
HOXB8	3218	broad.mit.edu	36	17	44045632	44045632	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024016	exon2	c.G663T	p.E221D	.	.	.
IGF2BP1	10642	broad.mit.edu	36	17	44470562	44470562	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006546	exon6	c.G435T	p.E145D	.	.	.
IGF2BP1	10642	broad.mit.edu	36	17	44472343	44472343	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006546	exon7	c.G709A	p.A237T	.	.	.
IGF2BP1	10642	broad.mit.edu	36	17	44474661	44474661	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160423	exon7	c.G583A	p.E195K	.	.	.
B4GALNT2	124872	broad.mit.edu	36	17	44596547	44596547	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153446	exon8	c.G1045T	p.D349Y	.	.	.
B4GALNT2	124872	broad.mit.edu	36	17	44601101	44601101	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153446	exon10	c.G1335T	p.E445D	.	.	.
ZNF652	22834	broad.mit.edu	36	17	44730854	44730854	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145365	exon6	c.C1741A	p.P581T	.	.	.
ZNF652	22834	broad.mit.edu	36	17	44745126	44745126	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145365	exon3	c.G981T	p.K327N	.	.	.
PHB	5245	broad.mit.edu	36	17	44837546	44837546	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002634	exon7	c.C626T	p.A209V	.	.	.
NGFR	4804	broad.mit.edu	36	17	44945206	44945206	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002507	exon6	c.G1120T	p.D374Y	.	.	.
FAM117A	81558	broad.mit.edu	36	17	45143669	45143669	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030802	exon8	c.C1309T	p.R437C	.	.	.
MYST2	11143	broad.mit.edu	36	17	45229242	45229242	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199157	exon3	c.T295G	p.S99A	.	.	.
PDK2	5164	broad.mit.edu	36	17	45541758	45541758	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002611	exon10	c.C1078A	p.L360I	.	.	.
SAMD14	201191	broad.mit.edu	36	17	45557315	45557315	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174920	exon2	c.C8A	p.S3Y	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45617895	45617895	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000088	exon51	c.C4362T	p.F1454F	.	.	.
ARRB2	409	broad.mit.edu	36	17	4568343	4568343	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004313	exon9	c.C660T	p.H220H	.	.	.
CXCL16	58191	broad.mit.edu	36	17	4589384	4589384	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100812	exon1	c.G57T	p.E19D	.	.	.
CHAD	1101	broad.mit.edu	36	17	45897776	45897776	+	Missense_Mutation	SNP	C	T	T	rs34405131	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001267	exon3	c.G962A	p.R321H	.	.	.
ZMYND15	84225	broad.mit.edu	36	17	4591643	4591643	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032265	exon3	c.G610A	p.V204I	.	.	.
MYCBPAP	84073	broad.mit.edu	36	17	45950004	45950004	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032133	exon4	c.C543A	p.I181I	.	.	.
CACNA1G	8913	broad.mit.edu	36	17	46048688	46048688	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198382	exon27	c.C4896A	p.V1632V	.	.	.
LUC7L3	51747	broad.mit.edu	36	17	46176169	46176169	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006107	exon6	c.C530T	p.S177L	.	.	.
TOB1	10140	broad.mit.edu	36	17	46296287	46296287	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005749	exon1	c.G91T	p.E31X	.	.	.
SPAG9	9043	broad.mit.edu	36	17	46422096	46422096	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003971	exon20	c.C2712A	p.V904V	.	.	.
SPAG9	9043	broad.mit.edu	36	17	46434094	46434094	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003971	exon12	c.C1546T	p.R516X	.	.	.
SPAG9	9043	broad.mit.edu	36	17	46437619	46437619	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003971	exon11	c.C1387T	p.R463W	.	.	.
SPAG9	9043	broad.mit.edu	36	17	46446663	46446663	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003971	exon8	c.C1100T	p.S367F	.	.	.
CA10	56934	broad.mit.edu	36	17	47086051	47086051	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020178	exon5	c.G511T	p.E171X	.	.	.
CHRNE	1145	broad.mit.edu	36	17	4746805	4746805	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000080	exon2	c.C79A	p.L27I	.	.	.
VPS53	55275	broad.mit.edu	36	17	478151	478151	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128159	exon9	c.A758C	p.K253T	.	.	.
ENO3	2027	broad.mit.edu	36	17	4796883	4796883	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_053013	exon3	c.G133T	p.E45X	.	.	.
KIF2B	84643	broad.mit.edu	36	17	49256323	49256323	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032559	exon1	c.G930A	p.T310T	.	.	.
KIF2B	84643	broad.mit.edu	36	17	49256732	49256732	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032559	exon1	c.G1339T	p.D447Y	.	.	.
ZFP3	124961	broad.mit.edu	36	17	4935956	4935956	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153018	exon2	c.G433T	p.E145X	.	.	.
USP6	9098	broad.mit.edu	36	17	4974679	4974679	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004505	exon3	c.G131A	p.S44N	.	.	.
USP6	9098	broad.mit.edu	36	17	4982252	4982252	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004505	exon13	c.G1038A	p.T346T	.	.	.
USP6	9098	broad.mit.edu	36	17	5014524	5014524	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004505	exon28	c.G3544T	p.G1182X	.	.	.
USP6	9098	broad.mit.edu	36	17	5014660	5014660	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004505	exon28	c.C3680T	p.A1227V	.	.	.
ZNF594	84622	broad.mit.edu	36	17	5027014	5027014	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032530	exon2	c.G1262T	p.R421I	.	.	.
STXBP4	252983	broad.mit.edu	36	17	50475673	50475673	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178509	exon11	c.A933G	p.V311V	.	.	.
HLF	3131	broad.mit.edu	36	17	50747735	50747735	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002126	exon3	c.C600A	p.F200L	.	.	.
TMEM100	55273	broad.mit.edu	36	17	51153078	51153078	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018286	exon2	c.G353T	p.R118I	.	.	.
PCTP	58488	broad.mit.edu	36	17	51199697	51199697	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021213	exon2	c.G144T	p.K48N	.	.	.
ANKFN1	162282	broad.mit.edu	36	17	51783133	51783133	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153228	exon4	c.C205T	p.R69C	.	.	.
ANKFN1	162282	broad.mit.edu	36	17	51909940	51909940	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153228	exon15	c.C1875A	p.I625I	.	.	.
DGKE	8526	broad.mit.edu	36	17	52288966	52288966	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003647	exon8	c.C1193A	p.S398Y	.	.	.
DGKE	8526	broad.mit.edu	36	17	52294585	52294585	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003647	exon11	c.C1498T	p.R500X	.	.	.
NUP88	4927	broad.mit.edu	36	17	5243605	5243605	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002532	exon8	c.C1282A	p.L428I	.	.	.
MSI2	124540	broad.mit.edu	36	17	52694539	52694539	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170721	exon4	c.G287A	p.R96Q	.	.	.
RPAIN	84268	broad.mit.edu	36	17	5272226	5272226	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160243	exon6	c.G601T	p.E201X	.	.	.
DHX33	56919	broad.mit.edu	36	17	5292925	5292925	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020162	exon11	c.G1743T	p.E581D	.	.	.
OR4D1	26689	broad.mit.edu	36	17	53587577	53587577	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012374	exon1	c.G64T	p.E22X	.	.	.
MKS1	54903	broad.mit.edu	36	17	53638519	53638519	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017777	exon18	c.C1600T	p.R534X	.	.	.
MKS1	54903	broad.mit.edu	36	17	53646698	53646698	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017777	exon6	c.G565T	p.E189X	.	.	.
LPO	4025	broad.mit.edu	36	17	53687200	53687200	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006151	exon9	c.C1135T	p.L379L	.	.	.
LPO	4025	broad.mit.edu	36	17	53698596	53698596	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006151	exon11	c.C1603T	p.R535C	.	.	.
MPO	4353	broad.mit.edu	36	17	53710216	53710216	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000250	exon7	c.G1175A	p.R392H	.	.	.
BZRAP1	9256	broad.mit.edu	36	17	53740075	53740075	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004758	exon24	c.G4879A	p.V1627I	.	.	.
BZRAP1	9256	broad.mit.edu	36	17	53741594	53741594	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004758	exon22	c.G4038T	p.E1346D	.	.	.
RNF43	54894	broad.mit.edu	36	17	53847693	53847693	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017763	exon2	c.T245C	p.L82S	.	.	.
SEPT4	5414	broad.mit.edu	36	17	53953192	53953192	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080416	exon11	c.C1231T	p.R411W	.	.	.
SEPT4	5414	broad.mit.edu	36	17	53954411	53954411	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080416	exon6	c.G656A	p.R219Q	.	.	.
SEPT4	5414	broad.mit.edu	36	17	53959120	53959120	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080416	exon2	c.C222A	p.F74L	.	.	.
C17orf47	284083	broad.mit.edu	36	17	53976429	53976429	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001038704	exon1	c.C118T	p.R40X	.	.	.
TEX14	56155	broad.mit.edu	36	17	53993902	53993902	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198393	exon30	c.G4255T	p.D1419Y	.	.	.
TEX14	56155	broad.mit.edu	36	17	54020318	54020318	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198393	exon16	c.C2640A	p.F880L	.	.	.
TEX14	56155	broad.mit.edu	36	17	54031844	54031844	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198393	exon14	c.G1861A	p.E621K	.	.	.
TEX14	56155	broad.mit.edu	36	17	54034250	54034250	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198393	exon13	c.C1594A	p.P532T	.	.	.
TEX14	56155	broad.mit.edu	36	17	54048568	54048568	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198393	exon7	c.C734A	p.S245Y	.	.	.
TEX14	56155	broad.mit.edu	36	17	54048649	54048649	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198393	exon7	c.C653T	p.A218V	.	.	.
TEX14	56155	broad.mit.edu	36	17	54084235	54084235	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198393	exon2	c.C127A	p.L43I	.	.	.
PPM1E	22843	broad.mit.edu	36	17	54387876	54387876	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014906	exon2	c.C549A	p.I183I	.	.	.
TRIM37	4591	broad.mit.edu	36	17	54460563	54460563	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005207	exon19	c.G2252A	p.R751Q	.	.	.
SKA2	348235	broad.mit.edu	36	17	54551614	54551614	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182620	exon3	c.G145T	p.E49X	.	.	.
C17orf71	55181	broad.mit.edu	36	17	54643458	54643458	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018149	exon1	c.C1264A	p.L422I	.	.	.
C17orf71	55181	broad.mit.edu	36	17	54643791	54643791	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018149	exon1	c.C1597T	p.R533X	.	.	.
C17orf71	55181	broad.mit.edu	36	17	54644987	54644987	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018149	exon3	c.C2021T	p.S674L	.	.	.
CLTC	1213	broad.mit.edu	36	17	55098296	55098296	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004859	exon11	c.C1695A	p.F565L	.	.	.
CLTC	1213	broad.mit.edu	36	17	55113151	55113151	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004859	exon19	c.G3016T	p.E1006X	.	.	.
TUBD1	51174	broad.mit.edu	36	17	55306792	55306792	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193613	exon3	c.G176A	p.R59H	.	.	.
USP32	84669	broad.mit.edu	36	17	55630475	55630475	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032582	exon27	c.C3362T	p.A1121V	.	.	.
USP32	84669	broad.mit.edu	36	17	55726832	55726832	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032582	exon4	c.C405A	p.F135L	.	.	.
APPBP2	10513	broad.mit.edu	36	17	55893977	55893977	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006380	exon8	c.C912A	p.I304I	.	.	.
BCAS3	54828	broad.mit.edu	36	17	56334770	56334770	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099432	exon11	c.G746A	p.R249Q	.	.	.
BCAS3	54828	broad.mit.edu	36	17	56466881	56466881	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099432	exon18	c.C1755T	p.F585F	.	.	.
TBX4	9496	broad.mit.edu	36	17	56910841	56910841	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018488	exon5	c.C621T	p.F207F	.	.	.
BRIP1	83990	broad.mit.edu	36	17	57118035	57118035	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032043	exon19	c.A2849C	p.K950T	.	.	.
INTS2	57508	broad.mit.edu	36	17	57323731	57323731	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020748	exon14	c.G1824A	p.S608S	.	.	.
INTS2	57508	broad.mit.edu	36	17	57339718	57339718	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020748	exon8	c.G1038A	p.E346E	.	.	.
MED13	9969	broad.mit.edu	36	17	57397169	57397169	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005121	exon20	c.G4824A	p.P1608P	.	.	.
MED13	9969	broad.mit.edu	36	17	57400212	57400212	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005121	exon18	c.A4157G	p.K1386R	.	.	.
MED13	9969	broad.mit.edu	36	17	57416379	57416379	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005121	exon15	c.G2823T	p.Q941H	.	.	.
MED13	9969	broad.mit.edu	36	17	57484706	57484706	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005121	exon3	c.A444C	p.E148D	.	.	.
EFCAB3	146779	broad.mit.edu	36	17	57844905	57844905	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173503	exon9	c.G948T	p.K316N	.	.	.
TLK2	11011	broad.mit.edu	36	17	57984800	57984800	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006852	exon9	c.G672T	p.K224N	.	.	.
TLK2	11011	broad.mit.edu	36	17	58031829	58031829	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006852	exon18	c.C1636T	p.R546W	.	.	.
MARCH10	162333	broad.mit.edu	36	17	58219641	58219641	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001100875	exon3	c.G142A	p.D48N	.	.	.
TANC2	26115	broad.mit.edu	36	17	58846727	58846727	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025185	exon23	c.C3875A	p.S1292Y	.	.	.
KCNH6	81033	broad.mit.edu	36	17	58976876	58976876	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030779	exon14	c.G2866T	p.G956X	.	.	.
KCNH6	81033	broad.mit.edu	36	17	58976952	58976952	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030779	exon14	c.G2942T	p.R981I	.	.	.
CCDC47	57003	broad.mit.edu	36	17	59185548	59185548	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020198	exon9	c.C1011A	p.F337L	.	.	.
PSMC5	5705	broad.mit.edu	36	17	59260946	59260946	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002805	exon4	c.C169T	p.R57C	.	.	.
PSMC5	5705	broad.mit.edu	36	17	59261453	59261453	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002805	exon6	c.A412G	p.M138V	.	.	.
PSMC5	5705	broad.mit.edu	36	17	59262236	59262236	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002805	exon8	c.C788A	p.S263Y	.	.	.
GH2	2689	broad.mit.edu	36	17	59303275	59303275	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022645	exon3	c.C312T	p.V104V	.	.	.
GH2	2689	broad.mit.edu	36	17	59312196	59312196	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022557	exon3	c.G216T	p.Q72H	.	.	.
WSCD1	23302	broad.mit.edu	36	17	5932076	5932076	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015253	exon3	c.C470T	p.T157I	.	.	.
CSH1	1442	broad.mit.edu	36	17	59327599	59327599	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001317	exon1	c.C5A	p.A2D	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59373943	59373943	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000334	exon23	c.C4263T	p.F1421F	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59379116	59379116	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000334	exon17	c.C3184T	p.R1062C	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59379748	59379748	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000334	exon16	c.C3099T	p.F1033F	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59388442	59388442	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000334	exon13	c.G2188A	p.V730M	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59388585	59388585	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000334	exon13	c.C2045T	p.S682L	.	.	.
WSCD1	23302	broad.mit.edu	36	17	5953720	5953720	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015253	exon6	c.C919T	p.R307W	.	.	.
PECAM1	5175	broad.mit.edu	36	17	59787387	59787387	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000442	exon7	c.C1325T	p.T442I	.	.	.
CCDC45	90799	broad.mit.edu	36	17	59952727	59952727	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138363	exon10	c.G1099T	p.E367X	.	.	.
CCDC45	90799	broad.mit.edu	36	17	59964278	59964278	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138363	exon20	c.C2385A	p.F795L	.	.	.
LRRC37A3	374819	broad.mit.edu	36	17	60286410	60286410	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199340	exon11	c.A4316C	p.K1439T	.	.	.
RGS9	8787	broad.mit.edu	36	17	60653855	60653855	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003835	exon19	c.C1893A	p.N631K	.	.	.
AXIN2	8313	broad.mit.edu	36	17	60984638	60984638	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004655	exon2	c.A563C	p.Q188P	.	.	.
CCDC46	201134	broad.mit.edu	36	17	61455830	61455830	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199165	exon14	c.G1376A	p.R459H	.	.	.
APOH	350	broad.mit.edu	36	17	61638746	61638746	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000042	exon8	c.G1005A	p.W335X	.	.	.
APOH	350	broad.mit.edu	36	17	61647201	61647201	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000042	exon5	c.G537A	p.A179A	.	.	.
PRKCA	5578	broad.mit.edu	36	17	62067992	62067992	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002737	exon4	c.G346A	p.D116N	.	.	.
HELZ	9931	broad.mit.edu	36	17	62547147	62547147	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014877	exon27	c.G3674A	p.R1225Q	.	.	.
HELZ	9931	broad.mit.edu	36	17	62549630	62549630	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014877	exon26	c.G3548T	p.R1183I	.	.	.
HELZ	9931	broad.mit.edu	36	17	62562712	62562712	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014877	exon23	c.G3018T	p.Q1006H	.	.	.
HELZ	9931	broad.mit.edu	36	17	62594283	62594283	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014877	exon14	c.T1522A	p.F508I	.	.	.
GLOD4	51031	broad.mit.edu	36	17	626955	626955	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016080	exon3	c.A164C	p.K55T	.	.	.
PSMD12	5718	broad.mit.edu	36	17	62773972	62773972	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174871	exon5	c.G542A	p.R181Q	.	.	.
PSMD12	5718	broad.mit.edu	36	17	62783943	62783943	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_174871	exon2	c.G175T	p.E59X	.	.	.
BPTF	2186	broad.mit.edu	36	17	63302236	63302236	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004459	exon5	c.G1967A	p.S656N	.	.	.
BPTF	2186	broad.mit.edu	36	17	63320655	63320655	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182641	exon7	c.G2455T	p.E819X	.	.	.
BPTF	2186	broad.mit.edu	36	17	63337539	63337539	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182641	exon11	c.C3077A	p.S1026X	.	.	.
BPTF	2186	broad.mit.edu	36	17	63372692	63372692	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182641	exon21	c.T7406G	p.L2469R	.	.	.
SLC16A6	9120	broad.mit.edu	36	17	63779231	63779231	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004694	exon5	c.C665T	p.A222V	.	.	.
SLC16A6	9120	broad.mit.edu	36	17	63780382	63780382	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004694	exon4	c.C498T	p.F166F	.	.	.
ARSG	22901	broad.mit.edu	36	17	63878254	63878254	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014960	exon8	c.C976T	p.R326C	.	.	.
WIPI1	55062	broad.mit.edu	36	17	63958611	63958611	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017983	exon3	c.C186T	p.I62I	.	.	.
PRKAR1A	5573	broad.mit.edu	36	17	64031473	64031473	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_212472	exon4	c.G361T	p.D121Y	.	.	.
PRKAR1A	5573	broad.mit.edu	36	17	64038013	64038013	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_212472	exon11	c.G974T	p.G325V	.	.	.
PRKAR1A	5573	broad.mit.edu	36	17	64038142	64038142	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_212472	exon11	c.G1103A	p.R368Q	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64395108	64395108	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007168	exon23	c.C3159T	p.F1053F	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64399285	64399285	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007168	exon22	c.G2964A	p.W988X	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64401925	64401925	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007168	exon21	c.G2900T	p.R967I	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64415481	64415481	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007168	exon16	c.T2153G	p.F718C	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64436935	64436935	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007168	exon8	c.G975T	p.K325N	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64490324	64490324	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080283	exon37	c.C4694A	p.S1565X	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64524039	64524039	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080283	exon22	c.A2989C	p.I997L	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64526264	64526264	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080283	exon20	c.C2652A	p.F884L	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64557160	64557160	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080283	exon3	c.C163A	p.H55N	.	.	.
KIAA0753	9851	broad.mit.edu	36	17	6456067	6456067	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014804	exon8	c.G1441T	p.D481Y	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64604023	64604023	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080284	exon25	c.C3361T	p.R1121C	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64605693	64605693	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080284	exon23	c.C3083A	p.S1028Y	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64619982	64619982	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080284	exon16	c.G2069T	p.R690I	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64631109	64631109	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080284	exon10	c.C1302A	p.F434L	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64641490	64641490	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080284	exon6	c.C678A	p.F226L	.	.	.
KIAA0753	9851	broad.mit.edu	36	17	6464861	6464861	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014804	exon7	c.G1286A	p.R429Q	.	.	.
ABCA10	10349	broad.mit.edu	36	17	64661207	64661207	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080282	exon34	c.G4041T	p.K1347N	.	.	.
ABCA10	10349	broad.mit.edu	36	17	64662771	64662771	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080282	exon31	c.C3678A	p.S1226S	.	.	.
ABCA10	10349	broad.mit.edu	36	17	64663658	64663658	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080282	exon30	c.C3459A	p.I1153I	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64759601	64759601	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_172232	exon35	c.C4417T	p.R1473X	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64768129	64768129	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_172232	exon27	c.G3584A	p.R1195Q	.	.	.
MAP2K6	5608	broad.mit.edu	36	17	65025257	65025257	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002758	exon4	c.G154T	p.D52Y	.	.	.
MAP2K6	5608	broad.mit.edu	36	17	65028101	65028101	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002758	exon6	c.C462A	p.I154I	.	.	.
NXN	64359	broad.mit.edu	36	17	653763	653763	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022463	exon7	c.A1034C	p.K345T	.	.	.
KCNJ16	3773	broad.mit.edu	36	17	65640603	65640603	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018658	exon5	c.G780A	p.E260E	.	.	.
XAF1	54739	broad.mit.edu	36	17	6600149	6600149	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199139	exon1	c.A28T	p.N10Y	.	.	.
SLC39A11	201266	broad.mit.edu	36	17	68539377	68539377	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001159770	exon4	c.C219T	p.F73F	.	.	.
SSTR2	6752	broad.mit.edu	36	17	68677200	68677200	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001050	exon2	c.C147A	p.I49I	.	.	.
SSTR2	6752	broad.mit.edu	36	17	68677891	68677891	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001050	exon2	c.G838A	p.V280I	.	.	.
C17orf80	55028	broad.mit.edu	36	17	68743555	68743555	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001100622	exon3	c.G339T	p.K113N	.	.	.
SDK2	54549	broad.mit.edu	36	17	68858436	68858436	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001144952	exon42	c.C5847T	p.F1949F	.	.	.
ASGR2	433	broad.mit.edu	36	17	6946188	6946189	+	Missense_Mutation	DNP	CC	AT	AT	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001181	exon8	c.714_715AT	.	.	.	.
TTYH2	94015	broad.mit.edu	36	17	69760989	69760989	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032646	exon12	c.C1434A	p.V478V	.	.	.
KIF19	124602	broad.mit.edu	36	17	69849690	69849690	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153209	exon3	c.C201T	p.F67F	.	.	.
KIF19	124602	broad.mit.edu	36	17	69856959	69856959	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153209	exon10	c.G1089T	p.Q363H	.	.	.
CD300A	11314	broad.mit.edu	36	17	69991854	69991854	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007261	exon7	c.G894T	p.K298N	.	.	.
CD300LB	124599	broad.mit.edu	36	17	70033720	70033720	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174892	exon2	c.C243A	p.T81T	.	.	.
TMEM104	54868	broad.mit.edu	36	17	70344349	70344349	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017728	exon10	c.C1419T	p.F473F	.	.	.
GRIN2C	2905	broad.mit.edu	36	17	70355605	70355605	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000835	exon8	c.G1752T	p.Q584H	.	.	.
GRIN2C	2905	broad.mit.edu	36	17	70358053	70358053	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000835	exon6	c.G1378A	p.D460N	.	.	.
DLG4	1742	broad.mit.edu	36	17	7037580	7037580	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001128827	exon16	c.G1630A	p.A544T	.	.	.
OTOP2	92736	broad.mit.edu	36	17	70435451	70435451	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178160	exon5	c.T606G	p.S202S	.	.	.
DVL2	1856	broad.mit.edu	36	17	7071472	7071472	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004422	exon12	c.G1338T	p.K446N	.	.	.
GGA3	23163	broad.mit.edu	36	17	70750082	70750082	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014001	exon7	c.G578T	p.R193I	.	.	.
MIF4GD	57409	broad.mit.edu	36	17	70777819	70777819	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020679	exon2	c.C53T	p.T18I	.	.	.
GRB2	2885	broad.mit.edu	36	17	70829423	70829423	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002086	exon5	c.C380A	p.S127Y	.	.	.
CTDNEP1	23399	broad.mit.edu	36	17	7090398	7090398	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015343	exon6	c.G376A	p.E126K	.	.	.
ITGB4	3691	broad.mit.edu	36	17	71243819	71243819	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005731	exon14	c.G1750T	p.D584Y	.	.	.
SLC2A4	6517	broad.mit.edu	36	17	7128892	7128892	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042	exon8	c.G930A	p.S310S	.	.	.
SLC2A4	6517	broad.mit.edu	36	17	7129840	7129840	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042	exon10	c.C1215A	p.F405L	.	.	.
UNK	85451	broad.mit.edu	36	17	71317529	71317529	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080419	exon3	c.C426T	p.F142F	.	.	.
UNK	85451	broad.mit.edu	36	17	71325187	71325187	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080419	exon10	c.A1518C	p.K506N	.	.	.
FBF1	85302	broad.mit.edu	36	17	71440689	71440689	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080542	exon4	c.C107A	p.S36Y	.	.	.
EVPL	2125	broad.mit.edu	36	17	71516464	71516464	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001988	exon22	c.G4417T	p.D1473Y	.	.	.
SRP68	6730	broad.mit.edu	36	17	71574955	71574955	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014230	exon3	c.G303T	p.K101N	.	.	.
PRPSAP1	5635	broad.mit.edu	36	17	71839946	71839946	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002766	exon4	c.G456A	p.A152A	.	.	.
ACAP1	9744	broad.mit.edu	36	17	7191175	7191175	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014716	exon14	c.C1233T	p.V411V	.	.	.
ACAP1	9744	broad.mit.edu	36	17	7192031	7192031	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014716	exon15	c.G1410T	p.V470V	.	.	.
ACAP1	9744	broad.mit.edu	36	17	7193088	7193088	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014716	exon18	c.C1729T	p.R577X	.	.	.
SRSF2	6427	broad.mit.edu	36	17	72243944	72243944	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003016	exon2	c.C560A	p.S187Y	.	.	.
TNK1	8711	broad.mit.edu	36	17	7227348	7227348	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003985	exon3	c.G219T	p.K73N	.	.	.
MFSD11	79157	broad.mit.edu	36	17	72275094	72275094	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024311	exon10	c.G714T	p.E238D	.	.	.
PLSCR3	57048	broad.mit.edu	36	17	7237658	7237658	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020360	exon3	c.G229A	p.E77K	.	.	.
C17orf74	201243	broad.mit.edu	36	17	7270080	7270080	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175734	exon2	c.G183A	p.W61X	.	.	.
SEC14L1	6397	broad.mit.edu	36	17	72701223	72701223	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039573	exon6	c.A471C	p.K157N	.	.	.
C17orf74	201243	broad.mit.edu	36	17	7270522	7270522	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175734	exon3	c.G488A	p.R163H	.	.	.
FGF11	2256	broad.mit.edu	36	17	7285921	7285921	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004112	exon3	c.C407T	p.S136L	.	.	.
POLR2A	5430	broad.mit.edu	36	17	7340611	7340611	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000937	exon4	c.C492T	p.F164F	.	.	.
TNRC6C	57690	broad.mit.edu	36	17	73557250	73557250	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018996	exon4	c.C512A	p.S171Y	.	.	.
Unknown	0	broad.mit.edu	36	17	73970591	73970591	+	IGR	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173628	exon57	c.G9104T	p.R3035I	.	.	.
Unknown	0	broad.mit.edu	36	17	73976318	73976318	+	IGR	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173628	exon55	c.C8754T	p.I2918I	.	.	.
Unknown	0	broad.mit.edu	36	17	74003685	74003685	+	IGR	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173628	exon38	c.C5770T	p.R1924W	.	.	.
Unknown	0	broad.mit.edu	36	17	74022599	74022599	+	IGR	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173628	exon26	c.C3965A	p.S1322Y	.	.	.
Unknown	0	broad.mit.edu	36	17	74059241	74059241	+	IGR	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173628	exon16	c.A2362C	p.N788H	.	.	.
Unknown	0	broad.mit.edu	36	17	74079390	74079390	+	IGR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173628	exon4	c.G609A	p.Q203Q	.	.	.
CYTH1	9267	broad.mit.edu	36	17	74206642	74206642	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017456	exon8	c.C554A	p.T185N	.	.	.
SHBG	6462	broad.mit.edu	36	17	7475660	7475660	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040	exon5	c.G584A	p.R195H	.	.	.
ATP1B2	482	broad.mit.edu	36	17	7497981	7497981	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001678	exon3	c.C339A	p.F113L	.	.	.
ATP1B2	482	broad.mit.edu	36	17	7499659	7499659	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001678	exon6	c.A699C	p.K233N	.	.	.
ENPP7	339221	broad.mit.edu	36	17	75319596	75319596	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178543	exon1	c.C100T	p.L34F	.	.	.
WRAP53	55135	broad.mit.edu	36	17	7546878	7546878	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001143990	exon9	c.C1257T	p.F419F	.	.	.
CCDC40	55036	broad.mit.edu	36	17	75638353	75638353	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017950	exon6	c.C909T	p.I303I	.	.	.
CCDC40	55036	broad.mit.edu	36	17	75647300	75647300	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017950	exon9	c.G1366T	p.D456Y	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7567717	7567717	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020877	exon2	c.G213A	p.E71E	.	.	.
SLC26A11	284129	broad.mit.edu	36	17	75816222	75816222	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166349	exon6	c.G604A	p.A202T	.	.	.
RNF213	57674	broad.mit.edu	36	17	75931607	75931607	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020914	exon28	c.C6217T	p.R2073X	.	.	.
RNF213	57674	broad.mit.edu	36	17	75952096	75952096	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020914	exon42	c.G11808T	p.K3936N	.	.	.
RNF213	57674	broad.mit.edu	36	17	75971385	75971385	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020914	exon59	c.T14137G	p.F4713V	.	.	.
RNF213	57674	broad.mit.edu	36	17	75981777	75981777	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020914	exon69	c.G15655T	p.E5219X	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7603024	7603024	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020877	exon14	c.A2305G	p.K769E	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7637187	7637187	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020877	exon47	c.G7508A	p.R2503H	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7641509	7641509	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020877	exon51	c.G8016T	p.K2672N	.	.	.
RPTOR	57521	broad.mit.edu	36	17	76481235	76481235	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020761	exon19	c.C2213A	p.S738Y	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7649379	7649379	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020877	exon60	c.G9385A	p.A3129T	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7662458	7662458	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020877	exon68	c.G10491T	p.E3497D	.	.	.
SLC38A10	124565	broad.mit.edu	36	17	76840915	76840915	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138570	exon13	c.G1620A	p.P540P	.	.	.
NPLOC4	55666	broad.mit.edu	36	17	77174716	77174716	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017921	exon10	c.G986A	p.R329Q	.	.	.
CHD3	1107	broad.mit.edu	36	17	7744945	7744945	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005852	exon19	c.G3029A	p.R1010Q	.	.	.
CHD3	1107	broad.mit.edu	36	17	7752490	7752490	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005852	exon34	c.C5096T	p.S1699L	.	.	.
CSNK1D	1453	broad.mit.edu	36	17	77802690	77802690	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139062	exon6	c.G739A	p.E247K	.	.	.
NARF	26502	broad.mit.edu	36	17	78015557	78015557	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031968	exon3	c.A214C	p.N72H	.	.	.
NARF	26502	broad.mit.edu	36	17	78034915	78034915	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031968	exon9	c.C942A	p.L314L	.	.	.
WDR45L	56270	broad.mit.edu	36	17	78167698	78167698	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019613	exon9	c.G919A	p.A307T	.	.	.
WDR45L	56270	broad.mit.edu	36	17	78176575	78176575	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019613	exon5	c.G406A	p.E136K	.	.	.
ZNF750	79755	broad.mit.edu	36	17	78382489	78382489	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024702	exon2	c.C1131T	p.F377F	.	.	.
ZNF750	79755	broad.mit.edu	36	17	78382600	78382600	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024702	exon2	c.C1020T	p.G340G	.	.	.
GUCY2D	3000	broad.mit.edu	36	17	7848059	7848059	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000180	exon3	c.G886A	p.A296T	.	.	.
ALOX12B	242	broad.mit.edu	36	17	7924282	7924282	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001139	exon6	c.C750A	p.V250V	.	.	.
ALOXE3	59344	broad.mit.edu	36	17	7956174	7956174	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001165960	exon7	c.T1142C	p.M381T	.	.	.
ARHGEF15	22899	broad.mit.edu	36	17	8159308	8159308	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173728	exon6	c.G1248A	p.R416R	.	.	.
KRBA2	124751	broad.mit.edu	36	17	8213308	8213308	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_213597	exon2	c.C1348A	p.L450I	.	.	.
KRBA2	124751	broad.mit.edu	36	17	8214109	8214109	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_213597	exon2	c.C547T	p.R183X	.	.	.
KRBA2	124751	broad.mit.edu	36	17	8215548	8215548	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_213597	exon1	c.C30A	p.V10V	.	.	.
NDEL1	81565	broad.mit.edu	36	17	8294853	8294853	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001025579	exon6	c.G557T	p.R186I	.	.	.
NDEL1	81565	broad.mit.edu	36	17	8304070	8304070	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001025579	exon8	c.G811A	p.A271T	.	.	.
MYH10	4628	broad.mit.edu	36	17	8331521	8331521	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005964	exon34	c.G4908A	p.A1636A	.	.	.
MYH10	4628	broad.mit.edu	36	17	8350462	8350462	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005964	exon25	c.G3192A	p.T1064T	.	.	.
MYH10	4628	broad.mit.edu	36	17	8352660	8352660	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005964	exon24	c.G3058T	p.E1020X	.	.	.
MYH10	4628	broad.mit.edu	36	17	8396129	8396129	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005964	exon8	c.C849A	p.I283I	.	.	.
CCDC42	146849	broad.mit.edu	36	17	8579176	8579176	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001158261	exon5	c.A614T	p.E205V	.	.	.
CCDC42	146849	broad.mit.edu	36	17	8588201	8588201	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001158261	exon2	c.C110T	p.S37L	.	.	.
MFSD6L	162387	broad.mit.edu	36	17	8641949	8641949	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152599	exon1	c.C1215T	p.F405F	.	.	.
PIK3R6	146850	broad.mit.edu	36	17	8665956	8665956	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001010855	exon17	c.G1811A	p.R604Q	.	.	.
PIK3R6	146850	broad.mit.edu	36	17	8680624	8680624	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001010855	exon7	c.G426T	p.Q142H	.	.	.
PIK3R6	146850	broad.mit.edu	36	17	8680865	8680865	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001010855	exon6	c.C359T	p.A120V	.	.	.
STX8	9482	broad.mit.edu	36	17	9222664	9222664	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004853	exon7	c.G573T	p.E191D	.	.	.
USP43	124739	broad.mit.edu	36	17	9572519	9572519	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153210	exon15	c.G2859T	p.M953I	.	.	.
GLP2R	9340	broad.mit.edu	36	17	9686626	9686626	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004246	exon4	c.G472A	p.E158K	.	.	.
GLP2R	9340	broad.mit.edu	36	17	9733528	9733528	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004246	exon13	c.C1443T	p.L481L	.	.	.
POTED	317754	broad.mit.edu	36	21	13904782	13904782	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_174981	exon1	c.G362A	p.G121E	.	.	.
POTED	317754	broad.mit.edu	36	21	13909380	13909380	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_174981	exon2	c.G587A	p.R196Q	.	.	.
POTED	317754	broad.mit.edu	36	21	13912638	13912638	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_174981	exon4	c.G908T	p.R303I	.	.	.
POTED	317754	broad.mit.edu	36	21	13935567	13935567	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_174981	exon11	c.C1564T	p.L522F	.	.	.
LIPI	149998	broad.mit.edu	36	21	14446853	14446853	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198996	exon8	c.A1093C	p.I365L	.	.	.
LIPI	149998	broad.mit.edu	36	21	14483370	14483370	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198996	exon2	c.C351T	p.F117F	.	.	.
SAMSN1	64092	broad.mit.edu	36	21	14794736	14794736	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022136	exon6	c.G753T	p.E251D	.	.	.
NRIP1	8204	broad.mit.edu	36	21	15261568	15261568	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003489	exon4	c.G817A	p.E273K	.	.	.
USP25	29761	broad.mit.edu	36	21	16085766	16085766	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013396	exon5	c.G467A	p.R156Q	.	.	.
USP25	29761	broad.mit.edu	36	21	16127647	16127647	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013396	exon17	c.A2103G	p.E701E	.	.	.
USP25	29761	broad.mit.edu	36	21	16136671	16136671	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013396	exon18	c.A2278G	p.I760V	.	.	.
USP25	29761	broad.mit.edu	36	21	16172575	16172575	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013396	exon24	c.G3078A	p.P1026P	.	.	.
USP25	29761	broad.mit.edu	36	21	16172643	16172643	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013396	exon24	c.G3146A	p.R1049Q	.	.	.
CXADR	1525	broad.mit.edu	36	21	17846016	17846016	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001338	exon3	c.G289T	p.D97Y	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18620742	18620742	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002772	exon16	c.G1799T	p.G600V	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18623405	18623405	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002772	exon15	c.G1732A	p.D578N	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18635640	18635640	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002772	exon13	c.G1525T	p.E509X	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18638196	18638196	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002772	exon11	c.G1224A	p.G408G	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18692102	18692102	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002772	exon3	c.G309T	p.K103N	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18697788	18697788	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002772	exon1	c.C23A	p.S8Y	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21578528	21578528	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004540	exon3	c.C274T	p.R92C	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21668171	21668171	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004540	exon9	c.G1162T	p.G388W	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21828826	21828826	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004540	exon17	c.A2380G	p.T794A	.	.	.
MRPL39	54148	broad.mit.edu	36	21	25891595	25891595	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017446	exon6	c.G591T	p.E197D	.	.	.
APP	351	broad.mit.edu	36	21	26249863	26249863	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201414	exon10	c.C1311T	p.F437F	.	.	.
APP	351	broad.mit.edu	36	21	26347431	26347431	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201414	exon4	c.G460A	p.A154T	.	.	.
CYYR1	116159	broad.mit.edu	36	21	26762703	26762703	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052954	exon4	c.C453T	p.N151N	.	.	.
ADAMTS1	9510	broad.mit.edu	36	21	27136542	27136542	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006988	exon2	c.T1064G	p.L355R	.	.	.
ADAMTS1	9510	broad.mit.edu	36	21	27136851	27136851	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006988	exon2	c.G755A	p.R252Q	.	.	.
LTN1	26046	broad.mit.edu	36	21	29247547	29247547	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015565	exon17	c.G3240A	p.L1080L	.	.	.
LTN1	26046	broad.mit.edu	36	21	29254762	29254762	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015565	exon12	c.C2439A	p.F813L	.	.	.
LTN1	26046	broad.mit.edu	36	21	29263721	29263721	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015565	exon9	c.C1387T	p.R463C	.	.	.
USP16	10600	broad.mit.edu	36	21	29348374	29348374	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001992	exon18	c.C2464A	p.L822M	.	.	.
BACH1	571	broad.mit.edu	36	21	29620857	29620857	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206866	exon3	c.G841A	p.E281K	.	.	.
BACH1	571	broad.mit.edu	36	21	29623722	29623722	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_206866	exon4	c.G1613A	p.R538Q	.	.	.
KRTAP23-1	337963	broad.mit.edu	36	21	30642754	30642754	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181624	exon1	c.C42A	p.S14S	.	.	.
KRTAP13-4	284827	broad.mit.edu	36	21	30724845	30724845	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181600	exon1	c.C381T	p.Y127Y	.	.	.
KRTAP6-2	337967	broad.mit.edu	36	21	30893046	30893046	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181604	exon1	c.G19A	p.G7R	.	.	.
KRTAP8-1	337879	broad.mit.edu	36	21	31107397	31107397	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175857	exon1	c.A13T	p.N5Y	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31430163	31430163	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003253	exon24	c.C3842T	p.S1281L	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31504351	31504351	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003253	exon12	c.G2269A	p.D757N	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31539828	31539828	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003253	exon7	c.C1431T	p.Y477Y	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31560866	31560866	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003253	exon5	c.G294T	p.L98F	.	.	.
HUNK	30811	broad.mit.edu	36	21	32268837	32268837	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014586	exon7	c.C1110T	p.R370R	.	.	.
C21orf63	59271	broad.mit.edu	36	21	32761974	32761974	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_058187	exon4	c.G581T	p.R194M	.	.	.
C21orf63	59271	broad.mit.edu	36	21	32798132	32798132	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_058187	exon7	c.G885A	p.S295S	.	.	.
SYNJ1	8867	broad.mit.edu	36	21	32972856	32972856	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003895	exon12	c.C1597T	p.R533X	.	.	.
SYNJ1	8867	broad.mit.edu	36	21	32994241	32994241	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003895	exon4	c.C374A	p.S125Y	.	.	.
GCFC1	94104	broad.mit.edu	36	21	33029143	33029143	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016631	exon18	c.G2743A	p.E915K	.	.	.
GCFC1	94104	broad.mit.edu	36	21	33045099	33045099	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013329	exon10	c.G1723A	p.D575N	.	.	.
GCFC1	94104	broad.mit.edu	36	21	33056342	33056342	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013329	exon4	c.G807A	p.E269E	.	.	.
IFNAR2	3455	broad.mit.edu	36	21	33539154	33539154	+	Missense_Mutation	SNP	G	T	T	rs9754221	by-cluster,by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207584	exon4	c.G126T	p.K42N	.	.	.
IFNAR2	3455	broad.mit.edu	36	21	33554830	33554830	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207584	exon8	c.C768A	p.V256V	.	.	.
IL10RB	3588	broad.mit.edu	36	21	33577344	33577344	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000628	exon5	c.C574T	p.R192X	.	.	.
IFNGR2	3460	broad.mit.edu	36	21	33726939	33726939	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005534	exon6	c.C770A	p.S257X	.	.	.
SON	6651	broad.mit.edu	36	21	33843785	33843785	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032195	exon3	c.A378C	p.E126D	.	.	.
SON	6651	broad.mit.edu	36	21	33847700	33847700	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032195	exon3	c.G4293T	p.M1431I	.	.	.
SON	6651	broad.mit.edu	36	21	33849517	33849517	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032195	exon3	c.G6110T	p.R2037I	.	.	.
SON	6651	broad.mit.edu	36	21	33851446	33851446	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032195	exon4	c.A6275G	p.K2092R	.	.	.
DONSON	29980	broad.mit.edu	36	21	33873735	33873735	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017613	exon9	c.C1354T	p.R452W	.	.	.
DONSON	29980	broad.mit.edu	36	21	33876140	33876140	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017613	exon7	c.C1138A	p.L380I	.	.	.
ITSN1	6453	broad.mit.edu	36	21	34061894	34061894	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001132	exon11	c.C934T	p.R312X	.	.	.
ITSN1	6453	broad.mit.edu	36	21	34066337	34066337	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001132	exon12	c.G1145A	p.R382H	.	.	.
ITSN1	6453	broad.mit.edu	36	21	34069253	34069253	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001132	exon14	c.G1567A	p.E523K	.	.	.
ITSN1	6453	broad.mit.edu	36	21	34075639	34075639	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001132	exon15	c.C1601A	p.S534Y	.	.	.
ITSN1	6453	broad.mit.edu	36	21	34076209	34076209	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001132	exon16	c.G1726T	p.E576X	.	.	.
ITSN1	6453	broad.mit.edu	36	21	34130766	34130766	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001132	exon29	c.T3621G	p.N1207K	.	.	.
ITSN1	6453	broad.mit.edu	36	21	34152866	34152866	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003024	exon31	c.C3790A	p.Q1264K	.	.	.
ITSN1	6453	broad.mit.edu	36	21	34182415	34182415	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003024	exon40	c.G5107A	p.E1703K	.	.	.
SETD4	54093	broad.mit.edu	36	21	36342503	36342503	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017438	exon5	c.G269A	p.R90Q	.	.	.
DOPEY2	9980	broad.mit.edu	36	21	36582973	36582973	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005128	exon34	c.C6347A	p.S2116X	.	.	.
MORC3	23515	broad.mit.edu	36	21	36627822	36627822	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015358	exon2	c.G48A	p.P16P	.	.	.
MORC3	23515	broad.mit.edu	36	21	36638862	36638862	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015358	exon7	c.G872A	p.R291Q	.	.	.
MORC3	23515	broad.mit.edu	36	21	36650810	36650810	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015358	exon10	c.G1126A	p.E376K	.	.	.
HLCS	3141	broad.mit.edu	36	21	37224516	37224516	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000411	exon6	c.G1084A	p.E362K	.	.	.
TTC3	7267	broad.mit.edu	36	21	37416149	37416149	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001894	exon12	c.G1063T	p.G355C	.	.	.
TTC3	7267	broad.mit.edu	36	21	37429567	37429567	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001894	exon18	c.G1461T	p.M487I	.	.	.
TTC3	7267	broad.mit.edu	36	21	37459807	37459807	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001894	exon33	c.G3421T	p.E1141X	.	.	.
DSCR3	10311	broad.mit.edu	36	21	37532753	37532753	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006052	exon3	c.G229T	p.E77X	.	.	.
DYRK1A	1859	broad.mit.edu	36	21	37806377	37806377	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130436	exon11	c.G1938T	p.M646I	.	.	.
KCNJ6	3763	broad.mit.edu	36	21	38008718	38008718	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002240	exon3	c.C612A	p.V204V	.	.	.
KCNJ6	3763	broad.mit.edu	36	21	38009095	38009095	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002240	exon3	c.G235A	p.D79N	.	.	.
DSCR4	10281	broad.mit.edu	36	21	38348938	38348938	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005867	exon3	c.G238T	p.E80X	.	.	.
KCNJ15	3772	broad.mit.edu	36	21	38594147	38594147	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_170736	exon3	c.T1094G	p.L365R	.	.	.
BRWD1	54014	broad.mit.edu	36	21	39480967	39480967	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018963	exon42	c.C6818A	p.S2273Y	.	.	.
BRWD1	54014	broad.mit.edu	36	21	39492765	39492765	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033656	exon40	c.C5447A	p.T1816N	.	.	.
BRWD1	54014	broad.mit.edu	36	21	39509146	39509146	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033656	exon32	c.G3672A	p.A1224A	.	.	.
LCA5L	150082	broad.mit.edu	36	21	39700150	39700150	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152505	exon10	c.C1541T	p.T514M	.	.	.
LCA5L	150082	broad.mit.edu	36	21	39705556	39705556	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152505	exon7	c.C1018T	p.R340X	.	.	.
LCA5L	150082	broad.mit.edu	36	21	39717023	39717023	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152505	exon5	c.C586A	p.L196I	.	.	.
SH3BGR	6450	broad.mit.edu	36	21	39768958	39768958	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007341	exon3	c.G448T	p.E150X	.	.	.
B3GALT5	10317	broad.mit.edu	36	21	39954700	39954700	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033171	exon4	c.G344A	p.R115Q	.	.	.
B3GALT5	10317	broad.mit.edu	36	21	39955034	39955034	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033171	exon4	c.G678A	p.A226A	.	.	.
B3GALT5	10317	broad.mit.edu	36	21	39955218	39955218	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033171	exon4	c.A862G	p.K288E	.	.	.
IGSF5	150084	broad.mit.edu	36	21	40059401	40059401	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080444	exon3	c.G170A	p.R57H	.	.	.
IGSF5	150084	broad.mit.edu	36	21	40073100	40073100	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080444	exon5	c.G932T	p.R311I	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40307145	40307145	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001389	exon33	c.T5725G	p.F1909V	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40368916	40368916	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001389	exon27	c.C4806T	p.I1602I	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40372506	40372506	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001389	exon26	c.C4689T	p.F1563F	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40379492	40379492	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001389	exon23	c.C4039T	p.R1347C	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40483032	40483032	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001389	exon12	c.C2360A	p.P787H	.	.	.
MX2	4600	broad.mit.edu	36	21	41700680	41700680	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002463	exon13	c.T1790G	p.F597C	.	.	.
TMPRSS2	7113	broad.mit.edu	36	21	41774311	41774311	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135099	exon6	c.G645T	p.E215D	.	.	.
UMODL1	89766	broad.mit.edu	36	21	42395373	42395373	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199527	exon8	c.G999T	p.K333N	.	.	.
ABCG1	9619	broad.mit.edu	36	21	42587768	42587768	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207629	exon14	c.C1692A	p.F564L	.	.	.
ABCG1	9619	broad.mit.edu	36	21	42589352	42589352	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207629	exon15	c.C1773T	p.F591F	.	.	.
UBASH3A	53347	broad.mit.edu	36	21	42709766	42709766	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001895	exon5	c.G700T	p.D234Y	.	.	.
UBASH3A	53347	broad.mit.edu	36	21	42737813	42737813	+	Silent	SNP	C	T	T	rs61735848	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001895	exon13	c.C1725T	p.L575L	.	.	.
RSPH1	89765	broad.mit.edu	36	21	42786155	42786155	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080860	exon2	c.G158T	p.R53I	.	.	.
PDE9A	5152	broad.mit.edu	36	21	43054058	43054058	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001574	exon11	c.G799A	p.D267N	.	.	.
WDR4	10785	broad.mit.edu	36	21	43166753	43166753	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033661	exon3	c.A273G	p.K91K	.	.	.
NDUFV3	4731	broad.mit.edu	36	21	43190133	43190133	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001503	exon2	c.C76T	p.R26X	.	.	.
U2AF1	7307	broad.mit.edu	36	21	43386411	43386411	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006758	exon8	c.G593A	p.R198Q	.	.	.
DNMT3L	29947	broad.mit.edu	36	21	44495985	44495985	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175867	exon9	c.C718A	p.L240I	.	.	.
TRPM2	7226	broad.mit.edu	36	21	44658292	44658292	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003307	exon20	c.C3053T	p.P1018L	.	.	.
C21orf29	54084	broad.mit.edu	36	21	44770100	44770100	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144991	exon8	c.C1200A	p.F400L	.	.	.
C21orf29	54084	broad.mit.edu	36	21	44771669	44771669	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144991	exon7	c.C1083T	p.F361F	.	.	.
KRTAP10-7	386675	broad.mit.edu	36	21	44845952	44845952	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198689	exon2	c.G988A	p.A330T	.	.	.
MCM3AP	8888	broad.mit.edu	36	21	46479731	46479731	+	Missense_Mutation	SNP	G	A	A	rs17183403	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003906	exon28	c.C5822T	p.A1941V	.	.	.
MCM3AP	8888	broad.mit.edu	36	21	46485307	46485307	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003906	exon26	c.C5479T	p.L1827F	.	.	.
MCM3AP	8888	broad.mit.edu	36	21	46528437	46528437	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003906	exon1	c.G1192T	p.E398X	.	.	.
DIP2A	23181	broad.mit.edu	36	21	46729101	46729101	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146115	exon2	c.A95G	p.D32G	.	.	.
TPTE	7179	broad.mit.edu	36	21	9938249	9938249	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199259	exon19	c.C1214T	p.S405L	.	.	.
TPTE	7179	broad.mit.edu	36	21	9964875	9964875	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199259	exon11	c.C529T	p.R177X	.	.	.
TPTE	7179	broad.mit.edu	36	21	9973264	9973264	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199259	exon9	c.A265G	p.T89A	.	.	.
AKTIP	64400	broad.mit.edu	36	16	52085585	52085588	+	Frame_Shift_Del	DEL	CAAA	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022476	exon8	c.673_676del	p.225_226del	.	.	.
ATF7IP2	80063	broad.mit.edu	36	16	10432251	10432251	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024997	exon2	c.C273A	p.F91L	.	.	.
EMP2	2013	broad.mit.edu	36	16	10539422	10539422	+	Silent	SNP	C	T	T	rs61731468	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001424	exon4	c.G180A	p.T60T	.	.	.
TEKT5	146279	broad.mit.edu	36	16	10683428	10683428	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144674	exon4	c.C786T	p.I262I	.	.	.
TEKT5	146279	broad.mit.edu	36	16	10695943	10695943	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144674	exon1	c.T289C	p.S97P	.	.	.
NPRL3	8131	broad.mit.edu	36	16	107326	107326	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077350	exon5	c.C367A	p.L123I	.	.	.
CIITA	4261	broad.mit.edu	36	16	10909067	10909067	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000246	exon11	c.G2217T	p.L739F	.	.	.
CLEC16A	23274	broad.mit.edu	36	16	11026242	11026242	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015226	exon12	c.C1500T	p.F500F	.	.	.
CLEC16A	23274	broad.mit.edu	36	16	11048680	11048680	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015226	exon16	c.G1846T	p.D616Y	.	.	.
CLEC16A	23274	broad.mit.edu	36	16	11179835	11179835	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015226	exon23	c.C2949T	p.L983L	.	.	.
TNP2	7142	broad.mit.edu	36	16	11270380	11270380	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005425	exon1	c.C241T	p.R81C	.	.	.
PRM2	5620	broad.mit.edu	36	16	11277605	11277605	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002762	exon1	c.G124A	p.E42K	.	.	.
TXNDC11	51061	broad.mit.edu	36	16	11681169	11681169	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015914	exon12	c.G2260A	p.E754K	.	.	.
ZC3H7A	29066	broad.mit.edu	36	16	11763330	11763330	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014153	exon18	c.G2150T	p.R717I	.	.	.
RUNDC2A	84127	broad.mit.edu	36	16	12047755	12047755	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032167	exon6	c.G442T	p.D148Y	.	.	.
SNX29	92017	broad.mit.edu	36	16	12399813	12399813	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080530	exon10	c.G754T	p.D252Y	.	.	.
UBE2I	7329	broad.mit.edu	36	16	1310199	1310199	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_194259	exon6	c.C247A	p.H83N	.	.	.
ERCC4	2072	broad.mit.edu	36	16	13932097	13932097	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005236	exon5	c.G822A	p.W274X	.	.	.
MKL2	57496	broad.mit.edu	36	16	14214916	14214916	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014048	exon6	c.T290C	p.L97S	.	.	.
MKL2	57496	broad.mit.edu	36	16	14247849	14247849	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014048	exon12	c.G1231T	p.E411X	.	.	.
MKL2	57496	broad.mit.edu	36	16	14248361	14248361	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014048	exon12	c.C1743T	p.I581I	.	.	.
PDXDC1	23042	broad.mit.edu	36	16	15010165	15010165	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015027	exon7	c.G608A	p.R203H	.	.	.
MPV17L	255027	broad.mit.edu	36	16	15409354	15409354	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173803	exon3	c.C404A	p.S135Y	.	.	.
C16orf45	89927	broad.mit.edu	36	16	15582587	15582587	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142469	exon4	c.C266A	p.T89N	.	.	.
IFT140	9742	broad.mit.edu	36	16	1573320	1573320	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014714	exon12	c.T1428C	p.S476S	.	.	.
MYH11	4629	broad.mit.edu	36	16	15736796	15736796	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040114	exon27	c.G3455A	p.G1152D	.	.	.
MYH11	4629	broad.mit.edu	36	16	15739975	15739975	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040114	exon25	c.G3090T	p.K1030N	.	.	.
MYH11	4629	broad.mit.edu	36	16	15777476	15777476	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040114	exon9	c.C870A	p.I290I	.	.	.
MYH11	4629	broad.mit.edu	36	16	15786056	15786056	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040114	exon6	c.C654T	p.Y218Y	.	.	.
MYH11	4629	broad.mit.edu	36	16	15824767	15824767	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040114	exon3	c.G348A	p.T116T	.	.	.
MYH11	4629	broad.mit.edu	36	16	15839606	15839606	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040114	exon2	c.C5T	p.A2V	.	.	.
ABCC1	4363	broad.mit.edu	36	16	16116387	16116387	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019862	exon22	c.G3166A	p.A1056T	.	.	.
ABCC1	4363	broad.mit.edu	36	16	16135765	16135765	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019862	exon27	c.C3847T	p.R1283W	.	.	.
XYLT1	64131	broad.mit.edu	36	16	17119042	17119042	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022166	exon11	c.C2519T	p.A840V	.	.	.
XYLT1	64131	broad.mit.edu	36	16	17142657	17142657	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022166	exon7	c.C1441T	p.R481W	.	.	.
C16orf73	254528	broad.mit.edu	36	16	1843095	1843095	+	5'UTR	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152764	exon9	c.C724T	p.R242W	.	.	.
NOMO2	283820	broad.mit.edu	36	16	18439602	18439602	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004060	exon19	c.C2259A	p.F753L	.	.	.
RPS15A	6210	broad.mit.edu	36	16	18703587	18703587	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001030009	exon4	c.T273G	p.N91K	.	.	.
ARL6IP1	23204	broad.mit.edu	36	16	18712192	18712192	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015161	exon6	c.G495T	p.V165V	.	.	.
SMG1	23049	broad.mit.edu	36	16	18736250	18736250	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015092	exon57	c.G9938A	p.R3313Q	.	.	.
SMG1	23049	broad.mit.edu	36	16	18766803	18766803	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015092	exon37	c.G5677T	p.E1893X	.	.	.
SMG1	23049	broad.mit.edu	36	16	18788710	18788710	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015092	exon19	c.G2600A	p.S867N	.	.	.
SYT17	51760	broad.mit.edu	36	16	19143590	19143590	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016524	exon7	c.C1157A	p.P386H	.	.	.
RPL3L	6123	broad.mit.edu	36	16	1935894	1935894	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005061	exon8	c.C990T	p.F330F	.	.	.
TMC5	79838	broad.mit.edu	36	16	19382805	19382805	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024780	exon4	c.G705T	p.K235N	.	.	.
CP110	9738	broad.mit.edu	36	16	19455663	19455663	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014711	exon5	c.A1171C	p.N391H	.	.	.
C16orf62	57020	broad.mit.edu	36	16	19535583	19535583	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020314	exon14	c.G1443A	p.P481P	.	.	.
IQCK	124152	broad.mit.edu	36	16	19745951	19745951	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153208	exon9	c.G793T	p.E265X	.	.	.
GFER	2671	broad.mit.edu	36	16	1975970	1975970	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005262	exon3	c.C558T	p.F186F	.	.	.
GP2	2813	broad.mit.edu	36	16	20234821	20234821	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007242	exon8	c.G1018A	p.D340N	.	.	.
PDILT	204474	broad.mit.edu	36	16	20279409	20279409	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174924	exon11	c.G1488T	p.K496N	.	.	.
PDILT	204474	broad.mit.edu	36	16	20288362	20288362	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174924	exon8	c.G1069A	p.E357K	.	.	.
PDILT	204474	broad.mit.edu	36	16	20288485	20288485	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174924	exon8	c.G946A	p.E316K	.	.	.
PDILT	204474	broad.mit.edu	36	16	20291850	20291850	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174924	exon6	c.C777A	p.I259I	.	.	.
ACSM5	54988	broad.mit.edu	36	16	20355933	20355933	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017888	exon11	c.G1367A	p.R456Q	.	.	.
ACSM1	116285	broad.mit.edu	36	16	20590458	20590458	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052956	exon4	c.G648T	p.K216N	.	.	.
ACSM1	116285	broad.mit.edu	36	16	20609929	20609929	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052956	exon1	c.G83A	p.R28H	.	.	.
ACSM3	6296	broad.mit.edu	36	16	20699798	20699798	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005622	exon6	c.T784C	p.F262L	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20883263	20883263	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017539	exon53	c.A9444G	p.K3148K	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20906597	20906597	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017539	exon46	c.G6801A	p.S2267S	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20938564	20938564	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017539	exon41	c.G5905A	p.A1969T	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20988395	20988395	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017539	exon23	c.C3223T	p.R1075C	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20994338	20994338	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017539	exon21	c.G3015T	p.E1005D	.	.	.
DNAH3	55567	broad.mit.edu	36	16	21036095	21036095	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017539	exon12	c.G1744T	p.E582X	.	.	.
ZP2	7783	broad.mit.edu	36	16	21118408	21118408	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003460	exon16	c.C1911A	p.S637S	.	.	.
OTOA	146183	broad.mit.edu	36	16	21624012	21624012	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144672	exon11	c.C1002A	p.F334L	.	.	.
MLST8	64223	broad.mit.edu	36	16	2196575	2196575	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199174	exon4	c.G258T	p.K86N	.	.	.
VWA3A	146177	broad.mit.edu	36	16	22060471	22060471	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173615	exon24	c.G2451T	p.E817D	.	.	.
EEF2K	29904	broad.mit.edu	36	16	22185270	22185270	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013302	exon14	c.C1499T	p.S500L	.	.	.
CDR2	1039	broad.mit.edu	36	16	22266183	22266183	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001802	exon5	c.C969T	p.I323I	.	.	.
CDR2	1039	broad.mit.edu	36	16	22283730	22283730	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001802	exon2	c.A186C	p.E62D	.	.	.
ABCA3	21	broad.mit.edu	36	16	2276752	2276752	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001089	exon22	c.C3222A	p.V1074V	.	.	.
HS3ST2	9956	broad.mit.edu	36	16	22834379	22834379	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006043	exon2	c.G1099T	p.E367X	.	.	.
ABCA3	21	broad.mit.edu	36	16	2298457	2298457	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001089	exon11	c.C1280T	p.A427V	.	.	.
USP31	57478	broad.mit.edu	36	16	22987162	22987162	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020718	exon16	c.T3765G	p.G1255G	.	.	.
USP31	57478	broad.mit.edu	36	16	22992618	22992618	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020718	exon14	c.C2261T	p.T754M	.	.	.
ABCA3	21	broad.mit.edu	36	16	2309688	2309688	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001089	exon8	c.C768T	p.L256L	.	.	.
SCNN1G	6340	broad.mit.edu	36	16	23134042	23134042	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039	exon13	c.G1701T	p.Q567H	.	.	.
SCNN1B	6338	broad.mit.edu	36	16	23271640	23271640	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000336	exon3	c.A329G	p.H110R	.	.	.
COG7	91949	broad.mit.edu	36	16	23322570	23322570	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153603	exon13	c.C1749T	p.F583F	.	.	.
COG7	91949	broad.mit.edu	36	16	23324948	23324948	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153603	exon12	c.G1612T	p.D538Y	.	.	.
PALB2	79728	broad.mit.edu	36	16	23548718	23548718	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024675	exon5	c.G2258A	p.R753Q	.	.	.
PALB2	79728	broad.mit.edu	36	16	23554827	23554827	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024675	exon4	c.G541T	p.E181X	.	.	.
PALB2	79728	broad.mit.edu	36	16	23556943	23556943	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024675	exon2	c.G57T	p.E19D	.	.	.
PLK1	5347	broad.mit.edu	36	16	23599003	23599003	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005030	exon2	c.G506A	p.R169Q	.	.	.
PLK1	5347	broad.mit.edu	36	16	23602852	23602852	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005030	exon5	c.C977T	p.S326L	.	.	.
PRKCB	5579	broad.mit.edu	36	16	24042759	24042759	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_212535	exon9	c.G1021A	p.D341N	.	.	.
CACNG3	10368	broad.mit.edu	36	16	24175759	24175759	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006539	exon1	c.G183T	p.S61S	.	.	.
CACNG3	10368	broad.mit.edu	36	16	24280388	24280388	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006539	exon4	c.G651T	p.K217N	.	.	.
RBBP6	5930	broad.mit.edu	36	16	24485982	24485982	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018703	exon15	c.G1607A	p.R536Q	.	.	.
RBBP6	5930	broad.mit.edu	36	16	24486271	24486271	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018703	exon15	c.A1896T	p.Q632H	.	.	.
RBBP6	5930	broad.mit.edu	36	16	24488697	24488697	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018703	exon16	c.C3083T	p.A1028V	.	.	.
RBBP6	5930	broad.mit.edu	36	16	24490203	24490203	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018703	exon17	c.A4213C	p.N1405H	.	.	.
TNRC6A	27327	broad.mit.edu	36	16	24695889	24695889	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014494	exon5	c.C298A	p.Q100K	.	.	.
TNRC6A	27327	broad.mit.edu	36	16	24728277	24728277	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014494	exon18	c.C4646A	p.S1549Y	.	.	.
TNRC6A	27327	broad.mit.edu	36	16	24738991	24738991	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014494	exon22	c.C5111T	p.S1704F	.	.	.
TNRC6A	27327	broad.mit.edu	36	16	24742502	24742502	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014494	exon25	c.C5762T	p.T1921I	.	.	.
SLC5A11	115584	broad.mit.edu	36	16	24825552	24825552	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052944	exon11	c.G1080A	p.A360A	.	.	.
ARHGAP17	55114	broad.mit.edu	36	16	24858363	24858363	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001006634	exon17	c.G1547T	p.R516I	.	.	.
AQP8	343	broad.mit.edu	36	16	25140300	25140300	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001169	exon3	c.G282A	p.A94A	.	.	.
HS3ST4	9951	broad.mit.edu	36	16	26054449	26054449	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006040	exon2	c.G750T	p.K250N	.	.	.
Unknown	0	broad.mit.edu	36	16	26986090	26986090	+	IGR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145545	exon1	c.C273T	p.Y91Y	.	.	.
NSMCE1	197370	broad.mit.edu	36	16	27144050	27144050	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145080	exon8	c.G730A	p.D244N	.	.	.
IL21R	50615	broad.mit.edu	36	16	27367503	27367503	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181079	exon10	c.G1081A	p.E361K	.	.	.
GTF3C1	2975	broad.mit.edu	36	16	27383526	27383526	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001520	exon34	c.G5488T	p.E1830X	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2753313	2753313	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016333	exon11	c.G2783T	p.R928I	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2753980	2753980	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016333	exon11	c.G3450A	p.S1150S	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2754965	2754965	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016333	exon11	c.G4435A	p.E1479K	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2756537	2756537	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016333	exon11	c.C6007T	p.R2003X	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2757976	2757976	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016333	exon11	c.G7446A	p.T2482T	.	.	.
KIAA0556	23247	broad.mit.edu	36	16	27668474	27668474	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015202	exon16	c.G2692A	p.E898K	.	.	.
KIAA0556	23247	broad.mit.edu	36	16	27669026	27669026	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015202	exon16	c.C3244T	p.R1082W	.	.	.
KIAA0556	23247	broad.mit.edu	36	16	27695780	27695780	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015202	exon25	c.C4480T	p.P1494S	.	.	.
KIAA0556	23247	broad.mit.edu	36	16	27697443	27697443	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015202	exon28	c.C4849T	p.R1617C	.	.	.
GSG1L	146395	broad.mit.edu	36	16	27882014	27882014	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001109763	exon2	c.C361T	p.R121C	.	.	.
XPO6	23214	broad.mit.edu	36	16	28030809	28030809	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015171	exon17	c.G2171A	p.R724Q	.	.	.
PRSS21	10942	broad.mit.edu	36	16	2808817	2808817	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006799	exon4	c.G396A	p.G132G	.	.	.
PRSS22	64063	broad.mit.edu	36	16	2843915	2843915	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022119	exon5	c.G669T	p.E223D	.	.	.
NUPR1	26471	broad.mit.edu	36	16	28456903	28456903	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042483	exon2	c.G241A	p.E81K	.	.	.
ATXN2L	11273	broad.mit.edu	36	16	28748714	28748714	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_148415	exon8	c.C868T	p.R290C	.	.	.
ATXN2L	11273	broad.mit.edu	36	16	28753351	28753351	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_148415	exon18	c.G2269A	p.D757N	.	.	.
RABEP2	79874	broad.mit.edu	36	16	28824556	28824556	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024816	exon11	c.G1461A	p.E487E	.	.	.
RABEP2	79874	broad.mit.edu	36	16	28838623	28838623	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024816	exon3	c.G417T	p.E139D	.	.	.
FAM57B	83723	broad.mit.edu	36	16	29944589	29944589	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031478	exon4	c.G499A	p.V167I	.	.	.
MYLPF	29895	broad.mit.edu	36	16	30295246	30295246	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013292	exon4	c.C174T	p.G58G	.	.	.
ITGAL	3683	broad.mit.edu	36	16	30398185	30398185	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002209	exon6	c.C478A	p.L160M	.	.	.
ITGAL	3683	broad.mit.edu	36	16	30415264	30415264	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114380	exon13	c.G1459T	p.E487X	.	.	.
ITGAL	3683	broad.mit.edu	36	16	30415380	30415380	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001114380	exon13	c.C1575T	p.I525I	.	.	.
ITGAL	3683	broad.mit.edu	36	16	30423009	30423009	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114380	exon16	c.G1909T	p.D637Y	.	.	.
ZNF764	92595	broad.mit.edu	36	16	30476664	30476664	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172679	exon2	c.C201T	p.I67I	.	.	.
SRCAP	10847	broad.mit.edu	36	16	30643168	30643168	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006662	exon25	c.C4922A	p.S1641Y	.	.	.
SETD1A	9739	broad.mit.edu	36	16	30890511	30890511	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014712	exon13	c.G3328A	p.E1110K	.	.	.
STX1B	112755	broad.mit.edu	36	16	30912229	30912229	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052874	exon8	c.G615T	p.E205D	.	.	.
ZNF205	7755	broad.mit.edu	36	16	3105384	3105384	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042428	exon3	c.G85A	p.E29K	.	.	.
PRSS36	146547	broad.mit.edu	36	16	31060663	31060663	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173502	exon11	c.C1641T	p.G547G	.	.	.
ITGAM	3684	broad.mit.edu	36	16	31194505	31194505	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000632	exon9	c.G993T	p.K331N	.	.	.
ITGAM	3684	broad.mit.edu	36	16	31216350	31216350	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000632	exon13	c.C1371T	p.F457F	.	.	.
ITGAX	3687	broad.mit.edu	36	16	31279907	31279907	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000887	exon9	c.G884T	p.R295I	.	.	.
ITGAD	3681	broad.mit.edu	36	16	31342007	31342007	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005353	exon24	c.G2852A	p.R951Q	.	.	.
ZNF267	10308	broad.mit.edu	36	16	31834324	31834324	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003414	exon4	c.G1253A	p.R418H	.	.	.
MEFV	4210	broad.mit.edu	36	16	3233325	3233325	+	Silent	SNP	G	A	A	rs11466047	by-frequency,by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000243	exon10	c.C2163T	p.F721F	.	.	.
MEFV	4210	broad.mit.edu	36	16	3237077	3237077	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000243	exon5	c.C1527T	p.L509L	.	.	.
ZNF263	10127	broad.mit.edu	36	16	3274056	3274056	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005741	exon1	c.G237T	p.Q79H	.	.	.
ZNF263	10127	broad.mit.edu	36	16	3280036	3280036	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005741	exon6	c.G1529T	p.R510I	.	.	.
ZNF263	10127	broad.mit.edu	36	16	3280116	3280116	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005741	exon6	c.G1609A	p.E537K	.	.	.
ZNF263	10127	broad.mit.edu	36	16	3280261	3280261	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005741	exon6	c.G1754A	p.R585Q	.	.	.
CLUAP1	23059	broad.mit.edu	36	16	3496344	3496344	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015041	exon3	c.G147T	p.Q49H	.	.	.
CLUAP1	23059	broad.mit.edu	36	16	3509975	3509975	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024793	exon3	c.C153T	p.I51I	.	.	.
SLX4	84464	broad.mit.edu	36	16	3580009	3580009	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032444	exon12	c.G3631A	p.E1211K	.	.	.
SLX4	84464	broad.mit.edu	36	16	3580613	3580613	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032444	exon12	c.C3027T	p.G1009G	.	.	.
SLX4	84464	broad.mit.edu	36	16	3581294	3581294	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032444	exon12	c.C2346T	p.L782L	.	.	.
SLX4	84464	broad.mit.edu	36	16	3592141	3592141	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032444	exon4	c.G929A	p.R310Q	.	.	.
TRAP1	10131	broad.mit.edu	36	16	3665374	3665374	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016292	exon8	c.C840T	p.F280F	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3719579	3719579	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004380	exon31	c.G5470A	p.A1824T	.	.	.
POLR3K	51728	broad.mit.edu	36	16	37554	37554	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016310	exon3	c.C203T	p.S68L	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3840776	3840776	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004380	exon2	c.G321A	p.P107P	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3840861	3840861	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004380	exon2	c.G236T	p.G79V	.	.	.
ADCY9	115	broad.mit.edu	36	16	4104271	4104271	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001116	exon2	c.G1174T	p.E392X	.	.	.
ADCY9	115	broad.mit.edu	36	16	4104760	4104760	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001116	exon2	c.G685A	p.E229K	.	.	.
DNAJA3	9093	broad.mit.edu	36	16	4431409	4431409	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135110	exon4	c.C462T	p.Y154Y	.	.	.
HMOX2	3163	broad.mit.edu	36	16	4495582	4495582	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002134	exon2	c.C56T	p.S19F	.	.	.
HMOX2	3163	broad.mit.edu	36	16	4497858	4497858	+	Missense_Mutation	SNP	C	A	A	rs8045851	by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002134	exon4	c.C348A	p.F116L	.	.	.
MYLK3	91807	broad.mit.edu	36	16	45323912	45323912	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182493	exon4	c.G1171T	p.E391X	.	.	.
C16orf87	388272	broad.mit.edu	36	16	45394378	45394378	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001436	exon4	c.G452T	p.R151I	.	.	.
C16orf87	388272	broad.mit.edu	36	16	45401116	45401116	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001436	exon3	c.A246C	p.E82D	.	.	.
DNAJA2	10294	broad.mit.edu	36	16	45556109	45556109	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005880	exon6	c.G689T	p.R230I	.	.	.
PHKB	5257	broad.mit.edu	36	16	46240550	46240550	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031835	exon19	c.G1710A	p.P570P	.	.	.
MGRN1	23295	broad.mit.edu	36	16	4647317	4647317	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142291	exon5	c.C513A	p.F171L	.	.	.
MGRN1	23295	broad.mit.edu	36	16	4663614	4663614	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142291	exon10	c.G913A	p.D305N	.	.	.
ABCC12	94160	broad.mit.edu	36	16	46680020	46680020	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033226	exon24	c.G3412A	p.D1138N	.	.	.
ABCC12	94160	broad.mit.edu	36	16	46703278	46703278	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033226	exon14	c.G2034T	p.E678D	.	.	.
ABCC12	94160	broad.mit.edu	36	16	46732111	46732111	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033226	exon4	c.C645A	p.I215I	.	.	.
ABCC11	85320	broad.mit.edu	36	16	46783949	46783949	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145186	exon20	c.A2689G	p.N897D	.	.	.
SIAH1	6477	broad.mit.edu	36	16	46953799	46953799	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003031	exon2	c.G42A	p.S14S	.	.	.
C16orf78	123970	broad.mit.edu	36	16	47987895	47987895	+	Missense_Mutation	SNP	G	A	A	rs16947350	by-cluster,by-frequency,by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144602	exon4	c.G455A	p.R152Q	.	.	.
ZNF423	23090	broad.mit.edu	36	16	48116844	48116844	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015069	exon7	c.C3640A	p.L1214I	.	.	.
ZNF423	23090	broad.mit.edu	36	16	48227962	48227962	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015069	exon5	c.G2602A	p.A868T	.	.	.
ZNF423	23090	broad.mit.edu	36	16	48228472	48228472	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015069	exon5	c.G2092A	p.D698N	.	.	.
ZNF423	23090	broad.mit.edu	36	16	48229093	48229093	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015069	exon5	c.G1471A	p.D491N	.	.	.
ZNF423	23090	broad.mit.edu	36	16	48229934	48229934	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015069	exon5	c.G630T	p.K210N	.	.	.
HEATR3	55027	broad.mit.edu	36	16	48693725	48693725	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182922	exon14	c.G1798A	p.A600T	.	.	.
HEATR3	55027	broad.mit.edu	36	16	48693821	48693821	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182922	exon14	c.G1894T	p.E632X	.	.	.
ADCY7	113	broad.mit.edu	36	16	48900998	48900998	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114	exon17	c.C2100T	p.G700G	.	.	.
ADCY7	113	broad.mit.edu	36	16	48903505	48903505	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001114	exon20	c.G2506A	p.E836K	.	.	.
NKD1	85407	broad.mit.edu	36	16	49223741	49223741	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033119	exon9	c.C744T	p.C248C	.	.	.
NOD2	64127	broad.mit.edu	36	16	49303778	49303778	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022162	exon4	c.G2455A	p.A819T	.	.	.
NOD2	64127	broad.mit.edu	36	16	49308004	49308004	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022162	exon5	c.G2468A	p.R823H	.	.	.
CYLD	1540	broad.mit.edu	36	16	49341249	49341249	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015247	exon4	c.G139T	p.G47X	.	.	.
CYLD	1540	broad.mit.edu	36	16	49385831	49385831	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015247	exon19	c.G2677A	p.D893N	.	.	.
SALL1	6299	broad.mit.edu	36	16	49731182	49731182	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002968	exon2	c.T2452G	p.F818V	.	.	.
SALL1	6299	broad.mit.edu	36	16	49732893	49732893	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002968	exon2	c.C741T	p.I247I	.	.	.
SEC14L5	9717	broad.mit.edu	36	16	4980861	4980861	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014692	exon5	c.G438T	p.K146N	.	.	.
C16orf89	146556	broad.mit.edu	36	16	5045345	5045345	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098514	exon6	c.C771A	p.F257L	.	.	.
CHD9	80205	broad.mit.edu	36	16	51817864	51817864	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025134	exon5	c.C1982A	p.S661Y	.	.	.
CHD9	80205	broad.mit.edu	36	16	51900204	51900204	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025134	exon34	c.C7111T	p.R2371X	.	.	.
CHD9	80205	broad.mit.edu	36	16	51916160	51916160	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025134	exon39	c.T8498G	p.I2833S	.	.	.
RPGRIP1L	23322	broad.mit.edu	36	16	52197022	52197022	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127897	exon24	c.G3467A	p.R1156H	.	.	.
RPGRIP1L	23322	broad.mit.edu	36	16	52232495	52232495	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127897	exon19	c.C2909A	p.P970H	.	.	.
RPGRIP1L	23322	broad.mit.edu	36	16	52240451	52240451	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127897	exon16	c.C2230T	p.R744X	.	.	.
FTO	79068	broad.mit.edu	36	16	52417538	52417538	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080432	exon3	c.G385A	p.E129K	.	.	.
IRX3	79191	broad.mit.edu	36	16	52876470	52876470	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024336	exon2	c.G824A	p.R275H	.	.	.
IRX5	10265	broad.mit.edu	36	16	53524153	53524153	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005853	exon2	c.C492T	p.F164F	.	.	.
MMP2	4313	broad.mit.edu	36	16	54074517	54074517	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004530	exon2	c.C349T	p.P117S	.	.	.
MMP2	4313	broad.mit.edu	36	16	54075530	54075530	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004530	exon3	c.G482A	p.R161Q	.	.	.
SLC6A2	6530	broad.mit.edu	36	16	54248266	54248266	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172504	exon1	c.G159A	p.A53A	.	.	.
SLC6A2	6530	broad.mit.edu	36	16	54289417	54289417	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172504	exon9	c.C1368A	p.L456L	.	.	.
CES5A	221223	broad.mit.edu	36	16	54441038	54441038	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001143685	exon11	c.C1422T	p.F474F	.	.	.
AMFR	267	broad.mit.edu	36	16	55000992	55000992	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001144	exon3	c.G358T	p.D120Y	.	.	.
BBS2	583	broad.mit.edu	36	16	55077063	55077063	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031885	exon16	c.G1999T	p.E667X	.	.	.
BBS2	583	broad.mit.edu	36	16	55111222	55111222	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031885	exon1	c.G54T	p.M18I	.	.	.
NUP93	9688	broad.mit.edu	36	16	55410130	55410130	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014669	exon6	c.C543T	p.I181I	.	.	.
NUP93	9688	broad.mit.edu	36	16	55423729	55423729	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014669	exon12	c.G1273A	p.D425N	.	.	.
CPNE2	221184	broad.mit.edu	36	16	55728583	55728583	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152727	exon14	c.C1190T	p.A397V	.	.	.
RSPRY1	89970	broad.mit.edu	36	16	55812783	55812783	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133368	exon10	c.C1116A	p.V372V	.	.	.
RSPRY1	89970	broad.mit.edu	36	16	55822612	55822612	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133368	exon13	c.C1409A	p.S470X	.	.	.
ARL2BP	23568	broad.mit.edu	36	16	55843603	55843603	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012106	exon6	c.T415G	p.L139V	.	.	.
CCL22	6367	broad.mit.edu	36	16	55954977	55954977	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002990	exon3	c.G258T	p.M86I	.	.	.
CX3CL1	6376	broad.mit.edu	36	16	55973943	55973943	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002996	exon3	c.C692T	p.A231V	.	.	.
COQ9	57017	broad.mit.edu	36	16	56042606	56042606	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020312	exon2	c.C227T	p.S76F	.	.	.
GPR56	9289	broad.mit.edu	36	16	56247294	56247294	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145774	exon8	c.G906T	p.K302N	.	.	.
KIFC3	3801	broad.mit.edu	36	16	56363000	56363000	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130100	exon5	c.C481T	p.R161C	.	.	.
TEPP	374739	broad.mit.edu	36	16	56569369	56569369	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199456	exon2	c.C313T	p.R105C	.	.	.
MMP15	4324	broad.mit.edu	36	16	56632070	56632070	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002428	exon5	c.G877A	p.E293K	.	.	.
CCDC113	29070	broad.mit.edu	36	16	56849813	56849813	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142302	exon3	c.C269T	p.S90L	.	.	.
CCDC113	29070	broad.mit.edu	36	16	56871130	56871130	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142302	exon8	c.G920A	p.R307Q	.	.	.
GINS3	64785	broad.mit.edu	36	16	56984057	56984057	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001126130	exon1	c.G51T	p.E17D	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57131246	57131246	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016284	exon35	c.G4919A	p.R1640Q	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57135151	57135151	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206999	exon31	c.C4295T	p.S1432L	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57141175	57141175	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206999	exon25	c.G3471T	p.K1157N	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57174212	57174212	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_206999	exon10	c.G1030A	p.V344I	.	.	.
CDH8	1006	broad.mit.edu	36	16	60380877	60380877	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001796	exon8	c.G1288A	p.D430N	.	.	.
CDH11	1009	broad.mit.edu	36	16	63596251	63596251	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001797	exon3	c.A23G	p.Q8R	.	.	.
TK2	7084	broad.mit.edu	36	16	65108555	65108555	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172643	exon8	c.G510T	p.E170D	.	.	.
CMTM2	146225	broad.mit.edu	36	16	65178482	65178482	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199317	exon2	c.C367A	p.L123I	.	.	.
DYNC1LI2	1783	broad.mit.edu	36	16	65334063	65334063	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006141	exon4	c.G308A	p.R103H	.	.	.
NAE1	8883	broad.mit.edu	36	16	65414971	65414971	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001018159	exon6	c.G265T	p.E89X	.	.	.
CA7	766	broad.mit.edu	36	16	65444193	65444193	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005182	exon6	c.C594T	p.G198G	.	.	.
PDP2	57546	broad.mit.edu	36	16	65476109	65476109	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020786	exon2	c.G421A	p.D141N	.	.	.
CDH16	1014	broad.mit.edu	36	16	65499844	65499844	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004062	exon18	c.G2442T	p.K814N	.	.	.
SLC9A5	6553	broad.mit.edu	36	16	65848092	65848092	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004594	exon6	c.C1131T	p.L377L	.	.	.
PLEKHG4	25894	broad.mit.edu	36	16	65872539	65872539	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001129727	exon6	c.G764A	p.R255Q	.	.	.
PLEKHG4	25894	broad.mit.edu	36	16	65876248	65876248	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001129727	exon14	c.G1824T	p.K608N	.	.	.
KCTD19	146212	broad.mit.edu	36	16	65893283	65893283	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100915	exon5	c.C687A	p.F229L	.	.	.
LRRC36	55282	broad.mit.edu	36	16	65968255	65968255	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018296	exon11	c.G1785A	p.A595A	.	.	.
ATP6V0D1	9114	broad.mit.edu	36	16	66036008	66036008	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004691	exon3	c.C405T	p.F135F	.	.	.
FAM65A	79567	broad.mit.edu	36	16	66134189	66134189	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193522	exon13	c.C2011T	p.P671S	.	.	.
FAM65A	79567	broad.mit.edu	36	16	66135825	66135825	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193522	exon15	c.G2735A	p.R912H	.	.	.
CTCF	10664	broad.mit.edu	36	16	66208211	66208211	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001191022	exon3	c.C31T	p.R11W	.	.	.
GFOD2	81577	broad.mit.edu	36	16	66267327	66267327	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030819	exon3	c.C390T	p.F130F	.	.	.
TSNAXIP1	55815	broad.mit.edu	36	16	66417148	66417148	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018430	exon8	c.G730A	p.E244K	.	.	.
TSNAXIP1	55815	broad.mit.edu	36	16	66419293	66419293	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018430	exon16	c.G1873A	p.E625K	.	.	.
DPEP3	64180	broad.mit.edu	36	16	66569948	66569948	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001129758	exon3	c.G572A	p.R191H	.	.	.
DDX28	55794	broad.mit.edu	36	16	66613414	66613414	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018380	exon1	c.G1193T	p.G398V	.	.	.
ZFP90	146198	broad.mit.edu	36	16	67149475	67149475	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133458	exon2	c.G107T	p.R36M	.	.	.
ZFP90	146198	broad.mit.edu	36	16	67155180	67155180	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133458	exon4	c.G989A	p.R330Q	.	.	.
ZFP90	146198	broad.mit.edu	36	16	67155527	67155527	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133458	exon4	c.G1336A	p.E446K	.	.	.
ZFP90	146198	broad.mit.edu	36	16	67155741	67155741	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133458	exon4	c.G1550T	p.R517I	.	.	.
ZFP90	146198	broad.mit.edu	36	16	67156077	67156077	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133458	exon4	c.G1886T	p.R629I	.	.	.
CDH3	1001	broad.mit.edu	36	16	67287309	67287309	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001793	exon15	c.C2262T	p.I754I	.	.	.
TMCO7	79613	broad.mit.edu	36	16	67451771	67451771	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024562	exon2	c.G578A	p.R193Q	.	.	.
TMCO7	79613	broad.mit.edu	36	16	67458534	67458534	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024562	exon4	c.C904T	p.R302W	.	.	.
CIRH1A	84916	broad.mit.edu	36	16	67756909	67756909	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032830	exon15	c.C1812A	p.F604L	.	.	.
VPS4A	27183	broad.mit.edu	36	16	67911677	67911677	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013245	exon7	c.C753A	p.F251L	.	.	.
TERF2	7014	broad.mit.edu	36	16	67962026	67962026	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005652	exon5	c.G575T	p.R192I	.	.	.
NQO1	1728	broad.mit.edu	36	16	68309653	68309653	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000903	exon3	c.A177G	p.K59K	.	.	.
WWP2	11060	broad.mit.edu	36	16	68522966	68522966	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199424	exon5	c.C258T	p.F86F	.	.	.
AARS	16	broad.mit.edu	36	16	68859743	68859743	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001605	exon8	c.G1003A	p.A335T	.	.	.
DDX19A	55308	broad.mit.edu	36	16	68956523	68956523	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018332	exon7	c.C592T	p.R198X	.	.	.
SF3B3	23450	broad.mit.edu	36	16	69159704	69159704	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012426	exon22	c.C2970A	p.I990I	.	.	.
VAC14	55697	broad.mit.edu	36	16	69323010	69323010	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018052	exon14	c.C1550A	p.S517Y	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69409967	69409967	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032821	exon84	c.C14434T	p.R4812X	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69441996	69441996	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032821	exon74	c.C12504T	p.C4168C	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69465955	69465955	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032821	exon64	c.G10699T	p.D3567Y	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69483050	69483050	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032821	exon57	c.C9653T	p.A3218V	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69495163	69495163	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032821	exon52	c.C8712A	p.V2904V	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69495422	69495422	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032821	exon51	c.C8560A	p.L2854M	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69499763	69499763	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032821	exon49	c.C8286T	p.F2762F	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69500194	69500194	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032821	exon48	c.C8073T	p.F2691F	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69530031	69530031	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032821	exon44	c.G6979A	p.E2327K	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69543962	69543962	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032821	exon41	c.G6391A	p.E2131K	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69566620	69566620	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032821	exon31	c.C4689T	p.V1563V	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69609618	69609618	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032821	exon23	c.C3559T	p.R1187C	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69616837	69616837	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032821	exon21	c.G3136A	p.A1046T	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69619233	69619233	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032821	exon20	c.C2815T	p.R939W	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69770379	69770379	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032821	exon4	c.C334T	p.P112S	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69778170	69778170	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032821	exon2	c.C130T	p.R44X	.	.	.
FTSJD1	55783	broad.mit.edu	36	16	69875489	69875489	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018348	exon3	c.T1836C	p.C612C	.	.	.
FTSJD1	55783	broad.mit.edu	36	16	69876105	69876105	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018348	exon3	c.A1220C	p.K407T	.	.	.
FTSJD1	55783	broad.mit.edu	36	16	69877124	69877124	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018348	exon3	c.G201T	p.K67N	.	.	.
ZNF23	7571	broad.mit.edu	36	16	70040186	70040186	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145911	exon6	c.A1243C	p.T415P	.	.	.
ZNF19	7567	broad.mit.edu	36	16	70066905	70066905	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006961	exon6	c.G1046T	p.R349I	.	.	.
CHST4	10164	broad.mit.edu	36	16	70128757	70128757	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166395	exon2	c.C676T	p.R226C	.	.	.
TAT	6898	broad.mit.edu	36	16	70160186	70160186	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000353	exon11	c.G1153A	p.E385K	.	.	.
TAT	6898	broad.mit.edu	36	16	70167428	70167428	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000353	exon3	c.G238A	p.D80N	.	.	.
MARVELD3	91862	broad.mit.edu	36	16	70220782	70220782	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052858	exon2	c.C479T	p.S160L	.	.	.
AP1G1	164	broad.mit.edu	36	16	70336956	70336956	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001030007	exon19	c.T1802A	p.I601N	.	.	.
AP1G1	164	broad.mit.edu	36	16	70364748	70364748	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001030007	exon4	c.G345A	p.T115T	.	.	.
ZNF821	55565	broad.mit.edu	36	16	70451853	70451853	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017530	exon6	c.C682T	p.R228W	.	.	.
HP	3240	broad.mit.edu	36	16	70651528	70651528	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001126102	exon5	c.G282T	p.K94N	.	.	.
DHX38	9785	broad.mit.edu	36	16	70688369	70688369	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014003	exon3	c.G471A	p.E157E	.	.	.
PMFBP1	83449	broad.mit.edu	36	16	70720191	70720191	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160213	exon15	c.A1519C	p.K507Q	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71388470	71388470	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006885	exon9	c.G5612A	p.S1871N	.	.	.
MLKL	197259	broad.mit.edu	36	16	73266408	73266408	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152649	exon10	c.C1332A	p.I444I	.	.	.
MLKL	197259	broad.mit.edu	36	16	73286892	73286892	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152649	exon2	c.C265A	p.L89I	.	.	.
LDHD	197257	broad.mit.edu	36	16	73705528	73705528	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153486	exon6	c.C735T	p.F245F	.	.	.
CFDP1	10428	broad.mit.edu	36	16	74006022	74006022	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006324	exon2	c.A137T	p.Q46L	.	.	.
TMEM231	79583	broad.mit.edu	36	16	74131540	74131540	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077416	exon6	c.C891T	p.F297F	.	.	.
CNTNAP4	85445	broad.mit.edu	36	16	75113489	75113489	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033401	exon17	c.C2588A	p.S863Y	.	.	.
CNTNAP4	85445	broad.mit.edu	36	16	75113633	75113633	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033401	exon17	c.G2732T	p.S911I	.	.	.
NUDT7	283927	broad.mit.edu	36	16	76333153	76333153	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001105663	exon4	c.C522A	p.I174I	.	.	.
VAT1L	57687	broad.mit.edu	36	16	76416763	76416763	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020927	exon3	c.C483T	p.F161F	.	.	.
VAT1L	57687	broad.mit.edu	36	16	76563302	76563302	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020927	exon8	c.C1132A	p.L378M	.	.	.
RBFOX1	54715	broad.mit.edu	36	16	7683327	7683327	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145893	exon12	c.C1068T	p.F356F	.	.	.
WWOX	51741	broad.mit.edu	36	16	76870040	76870040	+	Intron	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130791	exon6	c.A556C	p.K186Q	.	.	.
DYNLRB2	83657	broad.mit.edu	36	16	79134725	79134725	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130897	exon2	c.G55T	p.G19X	.	.	.
CDYL2	124359	broad.mit.edu	36	16	79276495	79276495	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152342	exon2	c.G57T	p.K19N	.	.	.
CENPN	55839	broad.mit.edu	36	16	79611252	79611252	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018455	exon6	c.G401A	p.R134Q	.	.	.
ATMIN	23300	broad.mit.edu	36	16	79635284	79635284	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015251	exon4	c.G1680T	p.E560D	.	.	.
ATMIN	23300	broad.mit.edu	36	16	79635737	79635737	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015251	exon4	c.C2133A	p.F711L	.	.	.
ATMIN	23300	broad.mit.edu	36	16	79635954	79635954	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015251	exon4	c.G2350A	p.E784K	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79738446	79738446	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052892	exon30	c.G5146T	p.E1716X	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79766792	79766792	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052892	exon15	c.G2502T	p.E834D	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79768990	79768990	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052892	exon14	c.T2360C	p.V787A	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79780092	79780092	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052892	exon10	c.G1684A	p.D562N	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79789999	79789999	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052892	exon7	c.A1312C	p.I438L	.	.	.
GAN	8139	broad.mit.edu	36	16	79945624	79945624	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022041	exon3	c.G396A	p.E132E	.	.	.
GAN	8139	broad.mit.edu	36	16	79945829	79945829	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022041	exon3	c.C601T	p.R201X	.	.	.
GAN	8139	broad.mit.edu	36	16	79948985	79948985	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022041	exon5	c.C921T	p.I307I	.	.	.
CMIP	80790	broad.mit.edu	36	16	80292799	80292799	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030629	exon16	c.G1507A	p.D503N	.	.	.
PLCG2	5336	broad.mit.edu	36	16	80498856	80498856	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002661	exon16	c.G1533T	p.Q511H	.	.	.
PLCG2	5336	broad.mit.edu	36	16	80499537	80499537	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002661	exon17	c.G1573T	p.E525X	.	.	.
PLCG2	5336	broad.mit.edu	36	16	80527349	80527349	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002661	exon27	c.G2917A	p.D973N	.	.	.
HSD17B2	3294	broad.mit.edu	36	16	80626566	80626566	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002153	exon1	c.C36T	p.C12C	.	.	.
HSD17B2	3294	broad.mit.edu	36	16	80626756	80626756	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002153	exon1	c.G226T	p.E76X	.	.	.
CDH13	1012	broad.mit.edu	36	16	82371269	82371269	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001257	exon12	c.C1877A	p.A626D	.	.	.
CDH13	1012	broad.mit.edu	36	16	82386131	82386131	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001257	exon14	c.C2137A	p.L713M	.	.	.
SLC38A8	146167	broad.mit.edu	36	16	82624538	82624538	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080442	exon3	c.G426A	p.P142P	.	.	.
MBTPS1	8720	broad.mit.edu	36	16	82661071	82661071	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003791	exon14	c.G1856A	p.R619Q	.	.	.
MBTPS1	8720	broad.mit.edu	36	16	82690191	82690191	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003791	exon3	c.G389A	p.R130Q	.	.	.
MBTPS1	8720	broad.mit.edu	36	16	82692809	82692809	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003791	exon2	c.G81T	p.K27N	.	.	.
WFDC1	58189	broad.mit.edu	36	16	82915541	82915541	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021197	exon5	c.G578A	p.R193Q	.	.	.
KIAA1609	57707	broad.mit.edu	36	16	83089080	83089080	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020947	exon2	c.G114A	p.P38P	.	.	.
COTL1	23406	broad.mit.edu	36	16	83158057	83158057	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021149	exon4	c.C324T	p.F108F	.	.	.
USP10	9100	broad.mit.edu	36	16	83335771	83335771	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005153	exon4	c.C183T	p.V61V	.	.	.
CRISPLD2	83716	broad.mit.edu	36	16	83458072	83458072	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031476	exon7	c.G778T	p.E260X	.	.	.
CRISPLD2	83716	broad.mit.edu	36	16	83460005	83460005	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031476	exon8	c.T901C	p.S301P	.	.	.
KIAA0513	9764	broad.mit.edu	36	16	83673695	83673695	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014732	exon10	c.G1005T	p.E335D	.	.	.
FAM92B	339145	broad.mit.edu	36	16	83690297	83690297	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198491	exon8	c.C910A	p.L304I	.	.	.
GINS2	51659	broad.mit.edu	36	16	84272721	84272721	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016095	exon3	c.C273A	p.Y91X	.	.	.
FOXF1	2294	broad.mit.edu	36	16	85102088	85102088	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001451	exon1	c.C412T	p.R138W	.	.	.
MTHFSD	64779	broad.mit.edu	36	16	85139590	85139590	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022764	exon4	c.G329T	p.R110I	.	.	.
CA5A	763	broad.mit.edu	36	16	86493605	86493605	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001739	exon4	c.C482A	p.S161Y	.	.	.
BANP	54971	broad.mit.edu	36	16	86572205	86572205	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001173543	exon3	c.G133T	p.E45X	.	.	.
BANP	54971	broad.mit.edu	36	16	86624219	86624219	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001173543	exon9	c.C1043T	p.P348L	.	.	.
ZNF778	197320	broad.mit.edu	36	16	87821687	87821687	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182531	exon6	c.G1406T	p.R469I	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87868837	87868837	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013275	exon11	c.G7599T	p.E2533D	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87876106	87876106	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013275	exon9	c.G4345A	p.G1449R	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87876274	87876274	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013275	exon9	c.G4177A	p.E1393K	.	.	.
FANCA	2175	broad.mit.edu	36	16	88409839	88409839	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000135	exon2	c.T136C	p.S46P	.	.	.
PRDM7	11105	broad.mit.edu	36	16	88654265	88654265	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098173	exon9	c.C1218T	p.S406S	.	.	.
USP7	7874	broad.mit.edu	36	16	8907874	8907874	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003470	exon13	c.A1338G	p.A446A	.	.	.
USP7	7874	broad.mit.edu	36	16	8922553	8922553	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003470	exon4	c.G484T	p.E162X	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9764698	9764698	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000833	exon14	c.C4204T	p.R1402W	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9765599	9765599	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134408	exon13	c.C3303T	p.V1101V	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9765895	9765895	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001134408	exon13	c.G3007T	p.E1003X	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9823749	9823749	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134408	exon10	c.C2041T	p.R681X	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9842432	9842432	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134408	exon6	c.G1359T	p.K453N	.	.	.
DSEL	92126	broad.mit.edu	36	18	63332228	63332228	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032160	exon2	c.628delA	p.I210fs	.	.	.
APCDD1	147495	broad.mit.edu	36	18	10461810	10461810	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153000	exon3	c.G526A	p.A176T	.	.	.
GNAL	2774	broad.mit.edu	36	18	11862310	11862310	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142339	exon11	c.G844T	p.D282Y	.	.	.
SPIRE1	56907	broad.mit.edu	36	18	12439837	12439837	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020148	exon16	c.G2029T	p.E677X	.	.	.
CEP76	79959	broad.mit.edu	36	18	12668336	12668336	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024899	exon10	c.C1395A	p.F465L	.	.	.
CEP76	79959	broad.mit.edu	36	18	12681450	12681450	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024899	exon7	c.C841T	p.R281X	.	.	.
CEP76	79959	broad.mit.edu	36	18	12691061	12691061	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024899	exon2	c.G115A	p.E39K	.	.	.
PTPN2	5771	broad.mit.edu	36	18	12849247	12849247	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080422	exon2	c.C76T	p.R26X	.	.	.
CEP192	55125	broad.mit.edu	36	18	13061155	13061155	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032142	exon28	c.G5292A	p.S1764S	.	.	.
C18orf19	125228	broad.mit.edu	36	18	13671703	13671703	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152352	exon2	c.G374A	p.R125Q	.	.	.
MC2R	4158	broad.mit.edu	36	18	13874645	13874645	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000529	exon2	c.C873A	p.I291I	.	.	.
MC2R	4158	broad.mit.edu	36	18	13874719	13874719	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000529	exon2	c.T799C	p.C267R	.	.	.
MC2R	4158	broad.mit.edu	36	18	13875140	13875140	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000529	exon2	c.G378A	p.A126A	.	.	.
MC2R	4158	broad.mit.edu	36	18	13875386	13875386	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000529	exon2	c.C132T	p.I44I	.	.	.
MC2R	4158	broad.mit.edu	36	18	13875451	13875451	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000529	exon2	c.C67T	p.R23C	.	.	.
ZNF519	162655	broad.mit.edu	36	18	14095352	14095352	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145287	exon3	c.G1187T	p.R396I	.	.	.
ZNF519	162655	broad.mit.edu	36	18	14096001	14096002	+	Missense_Mutation	DNP	AG	CT	CT	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145287	exon3	c.537_538AG	.	.	.	.
ROCK1	6093	broad.mit.edu	36	18	16801868	16801868	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005406	exon26	c.G3035A	p.R1012Q	.	.	.
ROCK1	6093	broad.mit.edu	36	18	16804364	16804364	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005406	exon23	c.G2763T	p.K921N	.	.	.
ROCK1	6093	broad.mit.edu	36	18	16825264	16825264	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005406	exon18	c.G2014T	p.D672Y	.	.	.
ROCK1	6093	broad.mit.edu	36	18	16883178	16883178	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005406	exon4	c.A287C	p.K96T	.	.	.
ESCO1	114799	broad.mit.edu	36	18	17401947	17401947	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052911	exon5	c.A1637C	p.K546T	.	.	.
ESCO1	114799	broad.mit.edu	36	18	17407904	17407904	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052911	exon4	c.G899A	p.R300Q	.	.	.
ESCO1	114799	broad.mit.edu	36	18	17408704	17408704	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052911	exon4	c.G99T	p.K33N	.	.	.
ABHD3	171586	broad.mit.edu	36	18	17485707	17485707	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138340	exon9	c.C1073T	p.T358I	.	.	.
ABHD3	171586	broad.mit.edu	36	18	17493215	17493215	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138340	exon6	c.C756T	p.F252F	.	.	.
ABHD3	171586	broad.mit.edu	36	18	17536315	17536315	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138340	exon3	c.A469C	p.I157L	.	.	.
MIB1	57534	broad.mit.edu	36	18	17613511	17613511	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020774	exon6	c.G775A	p.E259K	.	.	.
MIB1	57534	broad.mit.edu	36	18	17683283	17683283	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020774	exon17	c.C2522A	p.S841Y	.	.	.
NPC1	4864	broad.mit.edu	36	18	19379096	19379096	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000271	exon12	c.G1773T	p.V591V	.	.	.
NPC1	4864	broad.mit.edu	36	18	19388922	19388922	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000271	exon9	c.G1351A	p.E451K	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19676436	19676436	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198129	exon28	c.C3416T	p.P1139L	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19680286	19680286	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198129	exon31	c.G3747T	p.K1249N	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19735256	19735256	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127718	exon10	c.G1177T	p.E393X	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19755516	19755516	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127718	exon24	c.C3151A	p.L1051M	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19783762	19783762	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127718	exon33	c.G4392T	p.K1464N	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19784073	19784073	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127718	exon34	c.C4599T	p.I1533I	.	.	.
TTC39C	125488	broad.mit.edu	36	18	19914834	19914834	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135993	exon5	c.C748T	p.R250C	.	.	.
HRH4	59340	broad.mit.edu	36	18	20311074	20311074	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143828	exon2	c.G459A	p.S153S	.	.	.
ZNF521	25925	broad.mit.edu	36	18	21058988	21058988	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015461	exon4	c.C2892T	p.C964C	.	.	.
ZNF521	25925	broad.mit.edu	36	18	21059547	21059547	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015461	exon4	c.A2333G	p.N778S	.	.	.
THOC1	9984	broad.mit.edu	36	18	214148	214148	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005131	exon16	c.C1240T	p.R414W	.	.	.
SS18	6760	broad.mit.edu	36	18	21869836	21869836	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007559	exon8	c.C930T	p.Y310Y	.	.	.
PSMA8	143471	broad.mit.edu	36	18	22026349	22026349	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144662	exon7	c.G747T	p.K249N	.	.	.
TAF4B	6875	broad.mit.edu	36	18	22061036	22061036	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005640	exon1	c.G141T	p.K47N	.	.	.
CHST9	83539	broad.mit.edu	36	18	22750766	22750766	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031422	exon6	c.C787A	p.L263I	.	.	.
CHST9	83539	broad.mit.edu	36	18	22751152	22751152	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031422	exon6	c.A401G	p.E134G	.	.	.
CDH2	1000	broad.mit.edu	36	18	23786151	23786151	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001792	exon16	c.G2685T	p.K895N	.	.	.
THOC1	9984	broad.mit.edu	36	18	237929	237929	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005131	exon10	c.C706T	p.R236X	.	.	.
CDH2	1000	broad.mit.edu	36	18	23819679	23819679	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001792	exon12	c.C1786A	p.L596I	.	.	.
CDH2	1000	broad.mit.edu	36	18	23826742	23826742	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001792	exon9	c.G1219A	p.D407N	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2656177	2656177	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015295	exon2	c.G208T	p.E70X	.	.	.
DSC3	1825	broad.mit.edu	36	18	26858318	26858318	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001941	exon6	c.G770T	p.R257I	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2693718	2693718	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015295	exon13	c.T1676G	p.F559C	.	.	.
DSG1	1828	broad.mit.edu	36	18	27160841	27160841	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001942	exon3	c.G91T	p.D31Y	.	.	.
DSG1	1828	broad.mit.edu	36	18	27160912	27160912	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001942	exon3	c.C162T	p.F54F	.	.	.
DSG1	1828	broad.mit.edu	36	18	27168132	27168132	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001942	exon8	c.G974T	p.R325I	.	.	.
DSG1	1828	broad.mit.edu	36	18	27188566	27188566	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001942	exon15	c.C2409T	p.F803F	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2719394	2719394	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015295	exon24	c.G3035T	p.R1012I	.	.	.
DSG4	147409	broad.mit.edu	36	18	27222331	27222331	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134453	exon4	c.C220T	p.R74X	.	.	.
DSG4	147409	broad.mit.edu	36	18	27222935	27222935	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134453	exon5	c.C473T	p.S158L	.	.	.
DSG4	147409	broad.mit.edu	36	18	27226150	27226150	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134453	exon8	c.C854T	p.S285L	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2730755	2730755	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015295	exon28	c.C3569A	p.S1190Y	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2733906	2733906	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015295	exon29	c.G3781T	p.D1261Y	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2762321	2762321	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015295	exon41	c.C5126T	p.S1709L	.	.	.
TRAPPC8	22878	broad.mit.edu	36	18	27683634	27683634	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014939	exon25	c.C3628A	p.P1210T	.	.	.
TRAPPC8	22878	broad.mit.edu	36	18	27742853	27742853	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014939	exon7	c.G984T	p.K328N	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2774502	2774502	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015295	exon45	c.C5602T	p.R1868X	.	.	.
FAM59A	64762	broad.mit.edu	36	18	28102072	28102072	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022751	exon6	c.C2388T	p.G796G	.	.	.
FAM59A	64762	broad.mit.edu	36	18	28121848	28121848	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022751	exon4	c.G710A	p.R237H	.	.	.
FAM59A	64762	broad.mit.edu	36	18	28144251	28144251	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022751	exon3	c.T296C	p.I99T	.	.	.
FAM59A	64762	broad.mit.edu	36	18	28226972	28226972	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022751	exon2	c.A146T	p.E49V	.	.	.
C18orf34	374864	broad.mit.edu	36	18	28808571	28808571	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198995	exon21	c.A2347G	p.M783V	.	.	.
EMILIN2	84034	broad.mit.edu	36	18	2881141	2881141	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032048	exon4	c.A1016T	p.D339V	.	.	.
EMILIN2	84034	broad.mit.edu	36	18	2881316	2881316	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032048	exon4	c.C1191T	p.C397C	.	.	.
EMILIN2	84034	broad.mit.edu	36	18	2881551	2881551	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032048	exon4	c.C1426T	p.R476W	.	.	.
EMILIN2	84034	broad.mit.edu	36	18	2881956	2881956	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032048	exon4	c.C1831A	p.L611I	.	.	.
C18orf34	374864	broad.mit.edu	36	18	29057112	29057112	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001105528	exon17	c.C1888T	p.R630X	.	.	.
C18orf34	374864	broad.mit.edu	36	18	29079364	29079364	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198995	exon15	c.C1436A	p.S479Y	.	.	.
LPIN2	9663	broad.mit.edu	36	18	2911588	2911588	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014646	exon18	c.G2385T	p.K795N	.	.	.
C18orf34	374864	broad.mit.edu	36	18	29127180	29127180	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198995	exon12	c.A1117G	p.T373A	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29572779	29572779	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030632	exon11	c.G1413T	p.K471N	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29573020	29573020	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030632	exon11	c.C1654A	p.H552N	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29573776	29573776	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030632	exon11	c.C2410A	p.L804M	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29579278	29579278	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030632	exon12	c.G5468A	p.R1823Q	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29580215	29580215	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030632	exon12	c.C6405A	p.T2135T	.	.	.
NOL4	8715	broad.mit.edu	36	18	29686848	29686848	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198546	exon10	c.C1681T	p.R561X	.	.	.
NOL4	8715	broad.mit.edu	36	18	29717346	29717346	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198546	exon9	c.C1391T	p.A464V	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3065754	3065754	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019856	exon34	c.G4366A	p.D1456N	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3069256	3069256	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019856	exon33	c.G4281A	p.P1427P	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3084231	3084231	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019856	exon25	c.G3513T	p.E1171D	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3092540	3092540	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019856	exon22	c.C3219A	p.F1073L	.	.	.
ZNF397	84307	broad.mit.edu	36	18	31076557	31076557	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032347	exon2	c.C125A	p.T42N	.	.	.
ZSCAN30	100101467	broad.mit.edu	36	18	31087620	31087620	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001112734	exon4	c.C1277A	p.S426Y	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3116851	3116851	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019856	exon18	c.C2551T	p.R851C	.	.	.
ZNF24	7572	broad.mit.edu	36	18	31171342	31171342	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006965	exon4	c.C959T	p.S320L	.	.	.
ZNF24	7572	broad.mit.edu	36	18	31173899	31173899	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006965	exon3	c.G460T	p.D154Y	.	.	.
C18orf21	83608	broad.mit.edu	36	18	31812849	31812849	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031446	exon5	c.A545C	p.K182T	.	.	.
RPRD1A	55197	broad.mit.edu	36	18	31827182	31827182	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018170	exon7	c.C869A	p.S290Y	.	.	.
ELP2	55250	broad.mit.edu	36	18	31993745	31993745	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018255	exon15	c.T1584G	p.T528T	.	.	.
MOCOS	55034	broad.mit.edu	36	18	32037110	32037110	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017947	exon5	c.C978T	p.I326I	.	.	.
MOCOS	55034	broad.mit.edu	36	18	32100724	32100724	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017947	exon14	c.T2424C	p.C808C	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32428852	32428852	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025135	exon7	c.G711A	p.T237T	.	.	.
MYL12A	10627	broad.mit.edu	36	18	3243332	3243332	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006471	exon2	c.G87A	p.Q29Q	.	.	.
MYL12A	10627	broad.mit.edu	36	18	3245808	3245808	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006471	exon4	c.G408A	p.E136E	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32459496	32459496	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025135	exon10	c.G982A	p.D328N	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32459694	32459694	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025135	exon10	c.C1180T	p.R394X	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32521093	32521093	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025135	exon13	c.G1450T	p.D484Y	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32578000	32578000	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025135	exon20	c.C3362T	p.A1121V	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32603364	32603364	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025135	exon24	c.G4214A	p.R1405Q	.	.	.
PIK3C3	5289	broad.mit.edu	36	18	37838332	37838332	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002647	exon10	c.C999A	p.F333L	.	.	.
PIK3C3	5289	broad.mit.edu	36	18	37849445	37849445	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002647	exon12	c.A1333C	p.I445L	.	.	.
SYT4	6860	broad.mit.edu	36	18	39107936	39107936	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020783	exon2	c.G456T	p.E152D	.	.	.
SYT4	6860	broad.mit.edu	36	18	39108094	39108094	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020783	exon2	c.G298T	p.D100Y	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40783969	40783969	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015559	exon4	c.G666A	p.W222X	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40784596	40784596	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015559	exon4	c.C1293A	p.I431I	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40784746	40784746	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015559	exon4	c.A1443C	p.E481D	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40786325	40786325	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015559	exon4	c.C3022T	p.R1008C	.	.	.
SLC14A2	8170	broad.mit.edu	36	18	41459687	41459687	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007163	exon3	c.C192T	p.I64I	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41701562	41701562	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020964	exon37	c.T6375G	p.I2125M	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41751771	41751771	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020964	exon17	c.T3110G	p.F1037C	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41786511	41786511	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020964	exon3	c.G1105A	p.D369N	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41788887	41788887	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020964	exon2	c.T479G	p.F160C	.	.	.
PSTPIP2	9050	broad.mit.edu	36	18	41822708	41822708	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024430	exon14	c.C971A	p.S324Y	.	.	.
ATP5A1	498	broad.mit.edu	36	18	41923635	41923635	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004046	exon5	c.G545A	p.R182Q	.	.	.
C18orf25	147339	broad.mit.edu	36	18	42050106	42050106	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008239	exon2	c.G262T	p.D88Y	.	.	.
RNF165	494470	broad.mit.edu	36	18	42281525	42281525	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152470	exon4	c.G487A	p.D163N	.	.	.
RNF165	494470	broad.mit.edu	36	18	42290013	42290013	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152470	exon7	c.T895C	p.S299P	.	.	.
ST8SIA5	29906	broad.mit.edu	36	18	42538625	42538625	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013305	exon2	c.G132T	p.R44S	.	.	.
ST8SIA5	29906	broad.mit.edu	36	18	42590406	42590406	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013305	exon1	c.T64G	p.F22V	.	.	.
PIAS2	9063	broad.mit.edu	36	18	42649299	42649299	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004671	exon13	c.C1660A	p.L554I	.	.	.
TCEB3B	51224	broad.mit.edu	36	18	42813632	42813632	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016427	exon1	c.G2002A	p.E668K	.	.	.
TCEB3B	51224	broad.mit.edu	36	18	42815562	42815562	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016427	exon1	c.G72A	p.P24P	.	.	.
KATNAL2	83473	broad.mit.edu	36	18	42849967	42849967	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031303	exon10	c.C790T	p.R264W	.	.	.
SMAD2	4087	broad.mit.edu	36	18	43628943	43628943	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135937	exon7	c.G808A	p.D270N	SMAD2,large_intestine,colon,Substitution - Missense,+1	.	.
ZBTB7C	201501	broad.mit.edu	36	18	43821257	43821257	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039360	exon2	c.G220A	p.V74I	.	.	.
C18orf32	497661	broad.mit.edu	36	18	45262739	45262739	+	3'UTR	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199346	exon3	c.G205T	p.E69X	.	.	.
C18orf32	497661	broad.mit.edu	36	18	45263987	45263987	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199346	exon2	c.T130C	p.S44P	.	.	.
MYO5B	4645	broad.mit.edu	36	18	45606918	45606918	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080467	exon40	c.C5468A	p.P1823Q	.	.	.
MYO5B	4645	broad.mit.edu	36	18	45644701	45644701	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080467	exon28	c.T3651C	p.N1217N	.	.	.
MYO5B	4645	broad.mit.edu	36	18	45652565	45652565	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080467	exon27	c.G3573A	p.P1191P	.	.	.
MYO5B	4645	broad.mit.edu	36	18	45660795	45660795	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080467	exon23	c.C3074T	p.A1025V	.	.	.
MYO5B	4645	broad.mit.edu	36	18	45772662	45772662	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080467	exon6	c.C750A	p.V250V	.	.	.
ELAC1	55520	broad.mit.edu	36	18	46764834	46764834	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018696	exon3	c.A528C	p.K176N	.	.	.
COLEC12	81035	broad.mit.edu	36	18	470712	470712	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130386	exon2	c.G53T	p.R18L	.	.	.
DCC	1630	broad.mit.edu	36	18	48532470	48532470	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005215	exon2	c.C140A	p.S47Y	.	.	.
DCC	1630	broad.mit.edu	36	18	48843683	48843683	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005215	exon6	c.G996T	p.W332C	.	.	.
POLI	11201	broad.mit.edu	36	18	50051785	50051785	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007195	exon2	c.T173A	p.V58E	.	.	.
POLI	11201	broad.mit.edu	36	18	50074702	50074702	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007195	exon10	c.C2090A	p.S697Y	.	.	.
TCF4	6925	broad.mit.edu	36	18	51079696	51079696	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001083962	exon12	c.C989T	p.S330L	.	.	.
WDR7	23335	broad.mit.edu	36	18	52509450	52509450	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015285	exon8	c.C723T	p.F241F	.	.	.
WDR7	23335	broad.mit.edu	36	18	52514549	52514549	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015285	exon12	c.G1436A	p.R479Q	.	.	.
WDR7	23335	broad.mit.edu	36	18	52536326	52536326	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015285	exon13	c.C1712A	p.S571Y	.	.	.
ST8SIA3	51046	broad.mit.edu	36	18	53175314	53175314	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015879	exon3	c.T475C	p.Y159H	.	.	.
ST8SIA3	51046	broad.mit.edu	36	18	53175400	53175400	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015879	exon3	c.C561T	p.F187F	.	.	.
ST8SIA3	51046	broad.mit.edu	36	18	53178401	53178401	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015879	exon4	c.T1038G	p.F346L	.	.	.
FECH	2235	broad.mit.edu	36	18	53389686	53389686	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001012515	exon4	c.G417T	p.K139N	.	.	.
NARS	4677	broad.mit.edu	36	18	53434074	53434074	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004539	exon3	c.G225A	p.M75I	.	.	.
ATP8B1	5205	broad.mit.edu	36	18	53468638	53468638	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005603	exon27	c.C3490T	p.R1164X	.	.	.
ATP8B1	5205	broad.mit.edu	36	18	53487710	53487710	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005603	exon18	c.C1935A	p.I645I	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5385673	5385673	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012307	exon20	c.C3007A	p.L1003M	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5387241	5387241	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012307	exon18	c.T2657G	p.F886C	.	.	.
NEDD4L	23327	broad.mit.edu	36	18	54161270	54161270	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015277	exon15	c.C1470T	p.N490N	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5418395	5418395	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012307	exon9	c.C982T	p.R328X	.	.	.
NEDD4L	23327	broad.mit.edu	36	18	54184253	54184253	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015277	exon20	c.A1816C	p.N606H	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54300049	54300049	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052947	exon13	c.G6499A	p.E2167K	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54322284	54322284	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052947	exon11	c.G6106T	p.E2036X	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54335353	54335353	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052947	exon9	c.G5707T	p.D1903Y	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54355899	54355899	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052947	exon5	c.G2500T	p.E834X	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54355937	54355937	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052947	exon5	c.C2462A	p.S821Y	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54398419	54398419	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052947	exon4	c.C569A	p.P190H	.	.	.
MALT1	10892	broad.mit.edu	36	18	54514686	54514686	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173844	exon3	c.A485C	p.K162T	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5468333	5468333	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012307	exon3	c.C288A	p.L96L	.	.	.
LMAN1	3998	broad.mit.edu	36	18	55157011	55157011	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005570	exon9	c.C1110A	p.I370I	.	.	.
LMAN1	3998	broad.mit.edu	36	18	55173554	55173554	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005570	exon3	c.T448G	p.F150V	.	.	.
CDH20	28316	broad.mit.edu	36	18	57317553	57317553	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031891	exon2	c.C401T	p.A134V	.	.	.
CDH20	28316	broad.mit.edu	36	18	57368286	57368286	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031891	exon10	c.C1744T	p.P582S	.	.	.
PIGN	23556	broad.mit.edu	36	18	57975344	57975344	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_176787	exon6	c.A440C	p.K147T	.	.	.
TNFRSF11A	8792	broad.mit.edu	36	18	58168040	58168040	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003839	exon3	c.C173A	p.S58Y	.	.	.
ZCCHC2	54877	broad.mit.edu	36	18	58393525	58393525	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017742	exon13	c.G3231T	p.Q1077H	.	.	.
PHLPP1	23239	broad.mit.edu	36	18	58793743	58793743	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_194449	exon16	c.C3889T	p.R1297X	.	.	.
KDSR	2531	broad.mit.edu	36	18	59177981	59177981	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002035	exon3	c.G223T	p.E75X	.	.	.
VPS4B	9525	broad.mit.edu	36	18	59211746	59211746	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004869	exon10	c.G1109A	p.R370Q	.	.	.
SERPINB12	89777	broad.mit.edu	36	18	59379336	59379336	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080474	exon4	c.G423A	p.T141T	.	.	.
SERPINB13	5275	broad.mit.edu	36	18	59411147	59411147	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012397	exon5	c.G434A	p.R145Q	.	.	.
SERPINB4	6318	broad.mit.edu	36	18	59456049	59456049	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002974	exon8	c.G1057A	p.E353K	.	.	.
SERPINB11	89778	broad.mit.edu	36	18	59538235	59538235	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080475	exon6	c.G484A	p.A162T	.	.	.
SERPINB11	89778	broad.mit.edu	36	18	59538337	59538337	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080475	exon6	c.G586T	p.E196X	.	.	.
SERPINB11	89778	broad.mit.edu	36	18	59541497	59541497	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080475	exon8	c.G1063A	p.A355T	.	.	.
SERPINB2	5055	broad.mit.edu	36	18	59720681	59720681	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002575	exon7	c.G742T	p.D248Y	.	.	.
SERPINB10	5273	broad.mit.edu	36	18	59736283	59736283	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005024	exon3	c.G339A	p.A113A	.	.	.
SERPINB10	5273	broad.mit.edu	36	18	59751272	59751272	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005024	exon6	c.A644G	p.K215R	.	.	.
SERPINB8	5271	broad.mit.edu	36	18	59801934	59801934	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002640	exon5	c.A566T	p.E189V	.	.	.
CDH7	1005	broad.mit.edu	36	18	61698817	61698817	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004361	exon12	c.G2065T	p.E689X	.	.	.
CLUL1	27098	broad.mit.edu	36	18	617181	617181	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014410	exon5	c.C508A	p.L170I	.	.	.
L3MBTL4	91133	broad.mit.edu	36	18	6229789	6229789	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173464	exon9	c.C635T	p.A212V	.	.	.
CDH19	28513	broad.mit.edu	36	18	62348161	62348161	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021153	exon9	c.G1359A	p.S453S	.	.	.
DSEL	92126	broad.mit.edu	36	18	63330433	63330433	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032160	exon2	c.G2423T	p.R808I	.	.	.
TMX3	54495	broad.mit.edu	36	18	64529606	64529606	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019022	exon3	c.G116A	p.R39Q	.	.	.
DOK6	220164	broad.mit.edu	36	18	65516702	65516702	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152721	exon5	c.C492A	p.I164I	.	.	.
DOK6	220164	broad.mit.edu	36	18	65516785	65516785	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152721	exon5	c.C575T	p.T192M	.	.	.
CD226	10666	broad.mit.edu	36	18	65713950	65713950	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006566	exon4	c.G694A	p.E232K	.	.	.
RTTN	25914	broad.mit.edu	36	18	65932764	65932764	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173630	exon27	c.G3580T	p.E1194X	.	.	.
RTTN	25914	broad.mit.edu	36	18	65939789	65939789	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173630	exon26	c.G3511A	p.E1171K	.	.	.
SOCS6	9306	broad.mit.edu	36	18	66143724	66143724	+	Silent	SNP	C	T	T	rs41535447	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004232	exon2	c.C840T	p.F280F	.	.	.
TYMS	7298	broad.mit.edu	36	18	662902	662902	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001071	exon7	c.C847T	p.R283X	.	.	.
NETO1	81832	broad.mit.edu	36	18	68568333	68568333	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138966	exon9	c.C1485T	p.I495I	.	.	.
NETO1	81832	broad.mit.edu	36	18	68612430	68612430	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138966	exon6	c.G541A	p.G181R	.	.	.
ARHGAP28	79822	broad.mit.edu	36	18	6872238	6872238	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010000	exon10	c.G916T	p.E306X	.	.	.
ARHGAP28	79822	broad.mit.edu	36	18	6877207	6877207	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010000	exon11	c.C1028T	p.A343V	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6933295	6933295	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005559	exon62	c.A8951C	p.K2984T	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6987744	6987744	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005559	exon33	c.C4803T	p.L1601L	.	.	.
LAMA1	284217	broad.mit.edu	36	18	7004033	7004033	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005559	exon23	c.C3144T	p.L1048L	.	.	.
LAMA1	284217	broad.mit.edu	36	18	7007280	7007280	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005559	exon20	c.C2805A	p.C935X	.	.	.
LAMA1	284217	broad.mit.edu	36	18	7013203	7013203	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005559	exon19	c.C2661T	p.D887D	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70472134	70472134	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146190	exon1	c.G171A	p.S57S	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70472529	70472529	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146190	exon1	c.G566T	p.S189I	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70474650	70474650	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146190	exon1	c.G2687A	p.R896H	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70476603	70476603	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146190	exon1	c.G4640A	p.R1547Q	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70761481	70761481	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017757	exon7	c.G5273A	p.R1758H	.	.	.
ZADH2	284273	broad.mit.edu	36	18	71042431	71042431	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175907	exon2	c.T1062G	p.N354K	.	.	.
TSHZ1	10194	broad.mit.edu	36	18	71128004	71128004	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005786	exon2	c.C1519A	p.L507I	.	.	.
TSHZ1	10194	broad.mit.edu	36	18	71129256	71129256	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005786	exon2	c.T2771C	p.V924A	.	.	.
C18orf62	284274	broad.mit.edu	36	18	71268414	71268414	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001037331	exon1	c.C93A	p.F31L	.	.	.
ZNF516	9658	broad.mit.edu	36	18	72219819	72219819	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014643	exon4	c.G3239A	p.R1080Q	.	.	.
ZNF516	9658	broad.mit.edu	36	18	72221009	72221009	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014643	exon4	c.G2049T	p.E683D	.	.	.
ZNF236	7776	broad.mit.edu	36	18	72712755	72712755	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007345	exon5	c.T647A	p.I216N	.	.	.
ZNF236	7776	broad.mit.edu	36	18	72749308	72749308	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007345	exon14	c.C2336T	p.S779L	.	.	.
GALR1	2587	broad.mit.edu	36	18	73109793	73109793	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001480	exon3	c.G997T	p.E333X	.	.	.
SALL3	27164	broad.mit.edu	36	18	74858014	74858014	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_171999	exon3	c.C3607T	p.R1203W	.	.	.
ATP9B	374868	broad.mit.edu	36	18	75037816	75037816	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198531	exon8	c.G794A	p.R265Q	.	.	.
NFATC1	4772	broad.mit.edu	36	18	75312004	75312004	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006162	exon5	c.C1652T	p.T551M	.	.	.
CTDP1	9150	broad.mit.edu	36	18	75571370	75571370	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_048368	exon6	c.G809A	p.R270Q	.	.	.
CTDP1	9150	broad.mit.edu	36	18	75573964	75573964	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_048368	exon7	c.C868A	p.L290I	.	.	.
ADNP2	22850	broad.mit.edu	36	18	75994493	75994493	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014913	exon4	c.G206A	p.R69Q	.	.	.
ADNP2	22850	broad.mit.edu	36	18	75997479	75997479	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014913	exon4	c.G3192T	p.K1064N	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8075745	8075745	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002845	exon10	c.G1628A	p.G543E	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8243336	8243336	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002845	exon17	c.T2639C	p.I880T	.	.	.
KIAA0802	23255	broad.mit.edu	36	18	8803096	8803096	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015210	exon12	c.C2724A	p.V908V	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9185585	9185585	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015208	exon3	c.A124C	p.K42Q	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9244422	9244422	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015208	exon9	c.G1157A	p.R386Q	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9245570	9245570	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015208	exon9	c.G2305A	p.D769N	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9247187	9247187	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015208	exon9	c.C3922T	p.R1308X	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9248721	9248721	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015208	exon9	c.C5456T	p.S1819F	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9248888	9248888	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015208	exon9	c.C5623A	p.L1875I	.	.	.
TWSG1	57045	broad.mit.edu	36	18	9386447	9386447	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020648	exon4	c.G393T	p.E131D	.	.	.
ATP2B2	491	broad.mit.edu	36	3	10404962	10404962	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001683	exon6	c.906delA	p.K302fs	.	.	.
APPL1	26060	broad.mit.edu	36	3	57251961	57251961	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012096	exon7	c.453delA	p.S151fs	.	.	.
FANCD2	2177	broad.mit.edu	36	3	10069090	10069090	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033084	exon18	c.A1565G	p.D522G	.	.	.
FANCD2	2177	broad.mit.edu	36	3	10090024	10090024	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033084	exon28	c.C2693A	p.S898Y	.	.	.
FANCD2	2177	broad.mit.edu	36	3	10097847	10097847	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033084	exon31	c.C3040A	p.H1014N	.	.	.
TBC1D23	55773	broad.mit.edu	36	3	101496837	101496837	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199198	exon7	c.G727T	p.E243X	.	.	.
NIT2	56954	broad.mit.edu	36	3	101547164	101547164	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020202	exon5	c.G382T	p.E128X	.	.	.
VHL	7428	broad.mit.edu	36	3	10166563	10166563	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198156	exon2	c.G433A	p.E145K	VHL,kidney,NS,Substitution - Nonsense,0	.	.
GPR128	84873	broad.mit.edu	36	3	101848255	101848255	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032787	exon10	c.A1263C	p.L421F	.	.	.
IMPG2	50939	broad.mit.edu	36	3	102430923	102430923	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016247	exon17	c.T3624G	p.L1208L	.	.	.
IMPG2	50939	broad.mit.edu	36	3	102445980	102445980	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016247	exon13	c.T1885G	p.S629A	.	.	.
IMPG2	50939	broad.mit.edu	36	3	102475196	102475196	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016247	exon7	c.T747G	p.L249L	.	.	.
IMPG2	50939	broad.mit.edu	36	3	102521244	102521244	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016247	exon2	c.G208T	p.E70X	.	.	.
SENP7	57337	broad.mit.edu	36	3	102531898	102531898	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020654	exon20	c.G2721A	p.S907S	.	.	.
SENP7	57337	broad.mit.edu	36	3	102539043	102539043	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020654	exon17	c.C2480T	p.S827L	.	.	.
SENP7	57337	broad.mit.edu	36	3	102545482	102545482	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020654	exon14	c.C1844A	p.S615Y	.	.	.
SENP7	57337	broad.mit.edu	36	3	102568043	102568043	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020654	exon9	c.G1239T	p.E413D	.	.	.
SENP7	57337	broad.mit.edu	36	3	102569511	102569511	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020654	exon8	c.C831T	p.L277L	.	.	.
TATDN2	9797	broad.mit.edu	36	3	10277249	10277249	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014760	exon3	c.G843T	p.E281D	.	.	.
PCNP	57092	broad.mit.edu	36	3	102794284	102794284	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020357	exon5	c.T534G	p.N178K	.	.	.
ZBTB11	27107	broad.mit.edu	36	3	102852891	102852891	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014415	exon11	c.G2971T	p.E991X	.	.	.
ZBTB11	27107	broad.mit.edu	36	3	102856282	102856282	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014415	exon8	c.G2265T	p.K755N	.	.	.
ZBTB11	27107	broad.mit.edu	36	3	102857665	102857665	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014415	exon7	c.C2164A	p.L722I	.	.	.
FAM55C	91775	broad.mit.edu	36	3	103018389	103018389	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001134456	exon7	c.A983C	p.K328T	.	.	.
ZPLD1	131368	broad.mit.edu	36	3	103640119	103640119	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175056	exon2	c.G146T	p.R49I	.	.	.
ZPLD1	131368	broad.mit.edu	36	3	103659340	103659340	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175056	exon5	c.G583T	p.E195X	.	.	.
ATP2B2	491	broad.mit.edu	36	3	10418974	10418974	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001683	exon4	c.C456T	p.I152I	.	.	.
BBX	56987	broad.mit.edu	36	3	108930372	108930372	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142568	exon6	c.C476T	p.S159F	.	.	.
BBX	56987	broad.mit.edu	36	3	108974639	108974639	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142568	exon11	c.C1381T	p.R461X	.	.	.
BBX	56987	broad.mit.edu	36	3	108974977	108974977	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142568	exon11	c.A1719G	p.K573K	.	.	.
HHLA2	11148	broad.mit.edu	36	3	109559559	109559559	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007072	exon6	c.C864A	p.F288L	.	.	.
MYH15	22989	broad.mit.edu	36	3	109595586	109595586	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014981	exon37	c.C5301A	p.A1767A	.	.	.
MYH15	22989	broad.mit.edu	36	3	109595667	109595667	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014981	exon37	c.G5220T	p.K1740N	.	.	.
MYH15	22989	broad.mit.edu	36	3	109630406	109630406	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014981	exon28	c.G3385T	p.D1129Y	.	.	.
MYH15	22989	broad.mit.edu	36	3	109694061	109694061	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014981	exon10	c.C907A	p.L303I	.	.	.
KIAA1524	57650	broad.mit.edu	36	3	109780912	109780912	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020890	exon7	c.C724T	p.L242F	.	.	.
KIAA1524	57650	broad.mit.edu	36	3	109784595	109784595	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020890	exon3	c.T276C	p.C92C	.	.	.
DZIP3	9666	broad.mit.edu	36	3	109863776	109863776	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014648	exon21	c.G2405A	p.G802E	.	.	.
TRAT1	50852	broad.mit.edu	36	3	110055389	110055389	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016388	exon6	c.G536A	p.R179H	.	.	.
MORC1	27136	broad.mit.edu	36	3	110165116	110165116	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014429	exon27	c.A2634C	p.E878D	.	.	.
MORC1	27136	broad.mit.edu	36	3	110206419	110206419	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014429	exon20	c.C2020A	p.Q674K	.	.	.
MORC1	27136	broad.mit.edu	36	3	110258967	110258967	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014429	exon13	c.G1088A	p.R363Q	.	.	.
SLC6A1	6529	broad.mit.edu	36	3	11034551	11034551	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003042	exon4	c.C261A	p.F87L	.	.	.
PHLDB2	90102	broad.mit.edu	36	3	113175964	113175964	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134439	exon18	c.C3626A	p.P1209H	.	.	.
TMPRSS7	344805	broad.mit.edu	36	3	113249427	113249427	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042575	exon5	c.C504T	p.I168I	.	.	.
TMPRSS7	344805	broad.mit.edu	36	3	113252234	113252234	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042575	exon7	c.G739T	p.D247Y	.	.	.
SLC9A10	285335	broad.mit.edu	36	3	113370570	113370570	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_183061	exon25	c.C3081A	p.L1027L	.	.	.
SLC9A10	285335	broad.mit.edu	36	3	113400953	113400953	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_183061	exon20	c.G2428T	p.E810X	.	.	.
SLC9A10	285335	broad.mit.edu	36	3	113405866	113405866	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_183061	exon17	c.C2061A	p.I687I	.	.	.
SLC9A10	285335	broad.mit.edu	36	3	113441538	113441538	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_183061	exon12	c.C1285T	p.R429C	.	.	.
CD200	4345	broad.mit.edu	36	3	113551302	113551302	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005944	exon5	c.C748T	p.L250F	.	.	.
ATG3	64422	broad.mit.edu	36	3	113739355	113739355	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022488	exon9	c.T583G	p.L195V	.	.	.
SLC35A5	55032	broad.mit.edu	36	3	113782319	113782319	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017945	exon6	c.G665T	p.R222I	.	.	.
CCDC80	151887	broad.mit.edu	36	3	113841067	113841067	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199511	exon2	c.C376T	p.R126W	.	.	.
CD200R1	131450	broad.mit.edu	36	3	114130565	114130565	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170780	exon4	c.G488T	p.R163I	.	.	.
CD200R1	131450	broad.mit.edu	36	3	114176378	114176378	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138939	exon1	c.G17T	p.R6I	.	.	.
GTPBP8	29083	broad.mit.edu	36	3	114201066	114201066	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014170	exon5	c.A750G	p.K250K	.	.	.
BOC	91653	broad.mit.edu	36	3	114488295	114488295	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033254	exon20	c.C3241A	p.P1081T	.	.	.
WDR52	55779	broad.mit.edu	36	3	114598178	114598178	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164496	exon14	c.G1656A	p.T552T	.	.	.
SPICE1	152185	broad.mit.edu	36	3	114651999	114651999	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144718	exon15	c.G2197T	p.E733X	.	.	.
SPICE1	152185	broad.mit.edu	36	3	114655151	114655151	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144718	exon14	c.G1994T	p.R665I	.	.	.
SPICE1	152185	broad.mit.edu	36	3	114695641	114695641	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144718	exon5	c.G330T	p.E110D	.	.	.
KIAA2018	205717	broad.mit.edu	36	3	114861867	114861867	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001009899	exon7	c.C1352A	p.S451Y	.	.	.
ATP6V1A	523	broad.mit.edu	36	3	114999905	114999905	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001690	exon12	c.C1416T	p.F472F	.	.	.
GRAMD1C	54762	broad.mit.edu	36	3	115084302	115084302	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017577	exon6	c.C473A	p.S158Y	.	.	.
ZDHHC23	254887	broad.mit.edu	36	3	115150388	115150388	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173570	exon2	c.G49T	p.E17X	.	.	.
ZDHHC23	254887	broad.mit.edu	36	3	115155804	115155804	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173570	exon3	c.G729T	p.K243N	.	.	.
KIAA1407	57577	broad.mit.edu	36	3	115220366	115220366	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020817	exon8	c.C1012A	p.L338I	.	.	.
DRD3	1814	broad.mit.edu	36	3	115341127	115341127	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033663	exon5	c.C633T	p.I211I	.	.	.
ZNF80	7634	broad.mit.edu	36	3	115437911	115437911	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007136	exon1	c.G701A	p.R234Q	.	.	.
ZBTB20	26137	broad.mit.edu	36	3	115553385	115553385	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164343	exon11	c.G11A	p.R4H	.	.	.
GAP43	2596	broad.mit.edu	36	3	116878024	116878024	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130064	exon3	c.G613A	p.D205N	.	.	.
C3orf31	132001	broad.mit.edu	36	3	11860644	11860644	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138807	exon2	c.C177T	p.V59V	.	.	.
ARHGAP31	57514	broad.mit.edu	36	3	120584726	120584726	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020754	exon6	c.C645A	p.I215I	.	.	.
POGLUT1	56983	broad.mit.edu	36	3	120688448	120688448	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152305	exon7	c.C717T	p.N239N	.	.	.
CD80	941	broad.mit.edu	36	3	120746295	120746295	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005191	exon3	c.G210T	p.K70N	.	.	.
POPDC2	64091	broad.mit.edu	36	3	120850188	120850188	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022135	exon3	c.G618T	p.E206D	.	.	.
C3orf15	89876	broad.mit.edu	36	3	120938921	120938921	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033364	exon11	c.A1363C	p.N455H	.	.	.
GPR156	165829	broad.mit.edu	36	3	121369460	121369460	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001168271	exon9	c.C1542T	p.G514G	.	.	.
GPR156	165829	broad.mit.edu	36	3	121374992	121374992	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001168271	exon8	c.G937T	p.A313S	.	.	.
SYN2	6854	broad.mit.edu	36	3	12167757	12167757	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003178	exon6	c.C702A	p.I234I	.	.	.
STXBP5L	9515	broad.mit.edu	36	3	122407463	122407463	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014980	exon10	c.A881C	p.K294T	.	.	.
STXBP5L	9515	broad.mit.edu	36	3	122456610	122456610	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014980	exon16	c.T1620G	p.I540M	.	.	.
STXBP5L	9515	broad.mit.edu	36	3	122580342	122580342	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014980	exon22	c.C2338T	p.R780C	.	.	.
POLQ	10721	broad.mit.edu	36	3	122684976	122684976	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199420	exon18	c.A5917C	p.I1973L	.	.	.
POLQ	10721	broad.mit.edu	36	3	122690466	122690466	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199420	exon16	c.G4002A	p.Q1334Q	.	.	.
POLQ	10721	broad.mit.edu	36	3	122691373	122691373	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199420	exon16	c.C3095T	p.S1032L	.	.	.
POLQ	10721	broad.mit.edu	36	3	122723639	122723639	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199420	exon8	c.G1156T	p.E386X	.	.	.
ARGFX	503582	broad.mit.edu	36	3	122788132	122788132	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012659	exon5	c.C943A	p.L315I	.	.	.
FBXO40	51725	broad.mit.edu	36	3	122823695	122823695	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016298	exon3	c.G729T	p.K243N	.	.	.
HCLS1	3059	broad.mit.edu	36	3	122833487	122833487	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005335	exon14	c.G1357A	p.D453N	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122895297	122895297	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004487	exon13	c.T6748C	p.L2250L	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122895372	122895372	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004487	exon13	c.G6673T	p.E2225X	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122895594	122895594	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004487	exon13	c.G6451T	p.E2151X	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122895708	122895708	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004487	exon13	c.A6337G	p.K2113E	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122897570	122897570	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004487	exon13	c.G4475A	p.R1492Q	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122898312	122898312	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004487	exon13	c.G3733T	p.D1245Y	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122918593	122918593	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004487	exon9	c.G954T	p.K318N	.	.	.
IQCB1	9657	broad.mit.edu	36	3	122983313	122983313	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001023570	exon13	c.G1377T	p.K459N	.	.	.
IQCB1	9657	broad.mit.edu	36	3	122983394	122983394	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001023570	exon13	c.G1296A	p.A432A	.	.	.
SLC15A2	6565	broad.mit.edu	36	3	123096106	123096106	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145998	exon1	c.G93T	p.K31N	.	.	.
SLC15A2	6565	broad.mit.edu	36	3	123114646	123114646	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145998	exon4	c.G424T	p.E142X	.	.	.
ILDR1	286676	broad.mit.edu	36	3	123189935	123189935	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175924	exon7	c.G1478A	p.S493N	.	.	.
CASR	846	broad.mit.edu	36	3	123463861	123463861	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000388	exon4	c.C1289T	p.A430V	.	.	.
CASR	846	broad.mit.edu	36	3	123477440	123477440	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000388	exon5	c.C1469T	p.S490F	.	.	.
KPNA1	3836	broad.mit.edu	36	3	123643618	123643618	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002264	exon10	c.G953A	p.R318Q	.	.	.
KPNA1	3836	broad.mit.edu	36	3	123653150	123653150	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002264	exon8	c.G674A	p.R225H	.	.	.
PARP9	83666	broad.mit.edu	36	3	123738575	123738575	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146103	exon9	c.G1801A	p.E601K	.	.	.
PARP9	83666	broad.mit.edu	36	3	123757578	123757578	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146103	exon4	c.C130T	p.R44C	.	.	.
PARP15	165631	broad.mit.edu	36	3	123828557	123828557	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152615	exon5	c.C723A	p.F241L	.	.	.
PARP14	54625	broad.mit.edu	36	3	123886823	123886823	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017554	exon2	c.G289T	p.D97Y	.	.	.
PARP14	54625	broad.mit.edu	36	3	123893849	123893849	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017554	exon4	c.G367T	p.E123X	.	.	.
PARP14	54625	broad.mit.edu	36	3	123900950	123900950	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017554	exon6	c.A859C	p.K287Q	.	.	.
PARP14	54625	broad.mit.edu	36	3	123901335	123901335	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017554	exon6	c.A1244C	p.N415T	.	.	.
PARP14	54625	broad.mit.edu	36	3	123901927	123901927	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017554	exon6	c.G1836T	p.K612N	.	.	.
DIRC2	84925	broad.mit.edu	36	3	124047307	124047307	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032839	exon5	c.C841T	p.R281X	.	.	.
SEMA5B	54437	broad.mit.edu	36	3	124117155	124117155	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031702	exon14	c.C1810T	p.R604W	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1244508	1244508	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014461	exon4	c.G189T	p.K63N	.	.	.
ADCY5	111	broad.mit.edu	36	3	124522299	124522299	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_183357	exon9	c.G2098T	p.D700Y	.	.	.
ADCY5	111	broad.mit.edu	36	3	124526996	124526996	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_183357	exon8	c.G1951T	p.E651X	.	.	.
MYLK	4638	broad.mit.edu	36	3	124848941	124848941	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_053025	exon27	c.G4439A	p.R1480Q	.	.	.
MYLK	4638	broad.mit.edu	36	3	124995223	124995223	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_053025	exon4	c.C156T	p.F52F	.	.	.
KALRN	8997	broad.mit.edu	36	3	125647744	125647744	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003947	exon20	c.C3354A	p.F1118L	.	.	.
MKRN2	23609	broad.mit.edu	36	3	12588702	12588702	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014160	exon4	c.G472A	p.V158M	.	.	.
KALRN	8997	broad.mit.edu	36	3	125897704	125897704	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001024660	exon54	c.T7611C	p.N2537N	.	.	.
MKRN2	23609	broad.mit.edu	36	3	12598704	12598704	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014160	exon8	c.C1203T	p.L401L	.	.	.
ITGB5	3693	broad.mit.edu	36	3	126010660	126010660	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002213	exon9	c.G1162T	p.D388Y	.	.	.
RAF1	5894	broad.mit.edu	36	3	12601680	12601680	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002880	exon15	c.G1609A	p.V537I	.	.	.
HEG1	57493	broad.mit.edu	36	3	126172222	126172222	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020733	exon17	c.C4110A	p.F1370L	.	.	.
HEG1	57493	broad.mit.edu	36	3	126215176	126215176	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020733	exon6	c.C1937T	p.S646L	.	.	.
RAF1	5894	broad.mit.edu	36	3	12625355	12625355	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002880	exon5	c.G491A	p.R164Q	.	.	.
ZNF148	7707	broad.mit.edu	36	3	126434257	126434257	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021964	exon9	c.G2003T	p.R668I	.	.	.
OSBPL11	114885	broad.mit.edu	36	3	126748961	126748961	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022776	exon10	c.T1820G	p.F607C	.	.	.
OSBPL11	114885	broad.mit.edu	36	3	126777725	126777725	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022776	exon5	c.G664T	p.E222X	.	.	.
ROPN1B	152015	broad.mit.edu	36	3	127177126	127177126	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012337	exon3	c.G147A	p.T49T	.	.	.
ALDH1L1	10840	broad.mit.edu	36	3	127305332	127305332	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012190	exon23	c.G2701A	p.E901K	.	.	.
ALDH1L1	10840	broad.mit.edu	36	3	127339461	127339461	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012190	exon10	c.G1109C	p.G370A	.	.	.
CCDC37	348807	broad.mit.edu	36	3	127634704	127634704	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182628	exon14	c.C1389A	p.V463V	.	.	.
UROC1	131669	broad.mit.edu	36	3	127690863	127690863	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144639	exon17	c.G1654A	p.D552N	.	.	.
RPL32	6161	broad.mit.edu	36	3	12852668	12852668	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001007073	exon4	c.C333T	p.I111I	.	.	.
MCM2	4171	broad.mit.edu	36	3	128808329	128808329	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004526	exon6	c.C1080A	p.P360P	.	.	.
PODXL2	50512	broad.mit.edu	36	3	128862150	128862150	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015720	exon3	c.G589T	p.E197X	.	.	.
PODXL2	50512	broad.mit.edu	36	3	128873024	128873024	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015720	exon7	c.C1483T	p.R495C	.	.	.
MGLL	11343	broad.mit.edu	36	3	128983399	128983399	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007283	exon3	c.G185A	p.G62E	.	.	.
KBTBD12	166348	broad.mit.edu	36	3	129125163	129125163	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207335	exon1	c.G569T	p.R190I	.	.	.
KBTBD12	166348	broad.mit.edu	36	3	129129349	129129349	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207335	exon2	c.C1123T	p.R375X	.	.	.
RUVBL1	8607	broad.mit.edu	36	3	129282863	129282863	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003707	exon11	c.G1291A	p.E431K	.	.	.
RUVBL1	8607	broad.mit.edu	36	3	129284105	129284105	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003707	exon10	c.C1122T	p.I374I	.	.	.
EEFSEC	60678	broad.mit.edu	36	3	129463751	129463751	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021937	exon3	c.C615A	p.L205L	.	.	.
DNAJB8	165721	broad.mit.edu	36	3	129664129	129664129	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153330	exon3	c.C650T	p.S217L	.	.	.
KIAA1257	57501	broad.mit.edu	36	3	130189185	130189185	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020741	exon4	c.G631T	p.G211C	.	.	.
COPG	22820	broad.mit.edu	36	3	130465482	130465482	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016128	exon13	c.C1174A	p.R392S	.	.	.
COPG	22820	broad.mit.edu	36	3	130467138	130467138	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016128	exon14	c.G1281A	p.E427E	.	.	.
COPG	22820	broad.mit.edu	36	3	130468600	130468600	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016128	exon15	c.G1512T	p.E504D	.	.	.
IFT122	55764	broad.mit.edu	36	3	130701583	130701583	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052990	exon16	c.A2024G	p.D675G	.	.	.
IFT122	55764	broad.mit.edu	36	3	130705872	130705872	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052990	exon18	c.G2235T	p.K745N	.	.	.
RHO	6010	broad.mit.edu	36	3	130730313	130730313	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000539	exon1	c.C47T	p.A16V	.	.	.
RHO	6010	broad.mit.edu	36	3	130734218	130734218	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000539	exon4	c.C849T	p.F283F	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130772667	130772667	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015103	exon18	c.G3506A	p.R1169H	.	.	.
TMCC1	23023	broad.mit.edu	36	3	130872795	130872795	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001017395	exon4	c.C579A	p.I193I	.	.	.
COL6A5	256076	broad.mit.edu	36	3	131670503	131670503	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153264	exon38	c.A6965G	p.H2322R	.	.	.
COL6A5	256076	broad.mit.edu	36	3	131670768	131670768	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153264	exon38	c.C7230A	p.I2410I	.	.	.
COL6A5	256076	broad.mit.edu	36	3	131672408	131672408	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153264	exon39	c.C7481T	p.A2494V	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131765023	131765023	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102608	exon2	c.C486A	p.I162I	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131766783	131766783	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102608	exon3	c.C917A	p.A306D	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131768553	131768553	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102608	exon4	c.G1600A	p.G534R	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131769738	131769738	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102608	exon5	c.C2001T	p.S667S	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131775731	131775731	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102608	exon7	c.C3219A	p.I1073I	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131776053	131776053	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102608	exon7	c.G3541T	p.E1181X	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131844375	131844375	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102608	exon29	c.G5164T	p.G1722X	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131850730	131850730	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102608	exon32	c.C5367T	p.V1789V	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131850836	131850836	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102608	exon32	c.C5473A	p.L1825I	.	.	.
ATP2C1	27032	broad.mit.edu	36	3	132197587	132197587	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199183	exon22	c.G2020A	p.E674K	.	.	.
ASTE1	28990	broad.mit.edu	36	3	132215793	132215793	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014065	exon6	c.C1838T	p.S613L	.	.	.
ASTE1	28990	broad.mit.edu	36	3	132225988	132225988	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014065	exon3	c.C853T	p.R285X	.	.	.
ASTE1	28990	broad.mit.edu	36	3	132226368	132226368	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014065	exon3	c.C473A	p.S158X	.	.	.
NEK11	79858	broad.mit.edu	36	3	132231250	132231250	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024800	exon3	c.A8C	p.K3T	.	.	.
CPNE4	131034	broad.mit.edu	36	3	133106956	133106956	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130808	exon2	c.T22C	p.Y8H	.	.	.
ACPP	55	broad.mit.edu	36	3	133533735	133533735	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099	exon4	c.C313T	p.R105X	.	.	.
ACPP	55	broad.mit.edu	36	3	133569336	133569336	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001134194	exon11	c.G1237T	p.E413X	.	.	.
DNAJC13	23317	broad.mit.edu	36	3	133674706	133674706	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015268	exon21	c.C2236T	p.R746X	.	.	.
CCRL1	51554	broad.mit.edu	36	3	133802425	133802425	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178445	exon1	c.C494T	p.A165V	.	.	.
CCRL1	51554	broad.mit.edu	36	3	133802944	133802944	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178445	exon1	c.C1013A	p.S338Y	.	.	.
ACAD11	84129	broad.mit.edu	36	3	133829882	133829882	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032169	exon8	c.C1062A	p.L354L	.	.	.
ACAD11	84129	broad.mit.edu	36	3	133846375	133846375	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032169	exon2	c.C205T	p.L69F	.	.	.
TOPBP1	11073	broad.mit.edu	36	3	134845689	134845689	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007027	exon11	c.C1713T	p.I571I	.	.	.
TOPBP1	11073	broad.mit.edu	36	3	134851405	134851405	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007027	exon9	c.C1162T	p.R388C	.	.	.
TF	7018	broad.mit.edu	36	3	134955139	134955139	+	Missense_Mutation	SNP	C	T	T	rs41298977	by-frequency	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001063	exon3	c.C227T	p.A76V	.	.	.
TF	7018	broad.mit.edu	36	3	134958366	134958366	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001063	exon7	c.G693T	p.E231D	.	.	.
RYK	6259	broad.mit.edu	36	3	135360804	135360804	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002958	exon14	c.G1677A	p.P559P	.	.	.
RYK	6259	broad.mit.edu	36	3	135377524	135377524	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002958	exon12	c.G1353T	p.W451C	.	.	.
EPHB1	2047	broad.mit.edu	36	3	136153444	136153444	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004441	exon3	c.G665A	p.R222Q	.	.	.
EPHB1	2047	broad.mit.edu	36	3	136403102	136403102	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004441	exon12	c.C2227T	p.R743W	EPHB1,stomach,NS,Substitution - Missense,-1	.	.
PPP2R3A	5523	broad.mit.edu	36	3	137279954	137279954	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181897	exon6	c.C737T	p.S246L	.	.	.
MSL2	55167	broad.mit.edu	36	3	137353623	137353623	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018133	exon2	c.G790T	p.D264Y	.	.	.
STAG1	10274	broad.mit.edu	36	3	137560744	137560744	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005862	exon27	c.C2872T	p.R958C	.	.	.
STAG1	10274	broad.mit.edu	36	3	137600356	137600356	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005862	exon22	c.C2202T	p.V734V	.	.	.
STAG1	10274	broad.mit.edu	36	3	137722862	137722862	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005862	exon7	c.C559T	p.R187X	.	.	.
TMEM22	80723	broad.mit.edu	36	3	138056980	138056980	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001097599	exon2	c.G988A	p.A330T	.	.	.
NCK1	4690	broad.mit.edu	36	3	138147419	138147419	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190796	exon2	c.G339T	p.E113D	.	.	.
DZIP1L	199221	broad.mit.edu	36	3	139293971	139293971	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001170538	exon6	c.A814C	p.K272Q	.	.	.
ARMC8	25852	broad.mit.edu	36	3	139465701	139465701	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015396	exon15	c.G1214A	p.R405Q	.	.	.
TXNDC6	347736	broad.mit.edu	36	3	139505134	139505134	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178130	exon11	c.T650C	p.V217A	.	.	.
CEP70	80321	broad.mit.edu	36	3	139734071	139734071	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024491	exon8	c.A667G	p.K223E	.	.	.
PIK3CB	5291	broad.mit.edu	36	3	139886309	139886309	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006219	exon15	c.T2163G	p.T721T	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1399809	1399809	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014461	exon18	c.G2350T	p.E784X	.	.	.
COPB2	9276	broad.mit.edu	36	3	140573291	140573291	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004766	exon10	c.C1169T	p.S390F	.	.	.
CLSTN2	64084	broad.mit.edu	36	3	141668212	141668212	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022131	exon8	c.C1293T	p.F431F	.	.	.
CLSTN2	64084	broad.mit.edu	36	3	141758157	141758157	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022131	exon11	c.C1787T	p.A596V	.	.	.
XPC	7508	broad.mit.edu	36	3	14187033	14187033	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145769	exon3	c.G321T	p.K107N	.	.	.
TRIM42	287015	broad.mit.edu	36	3	141889476	141889476	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152616	exon3	c.A1262T	p.N421I	.	.	.
LSM3	27258	broad.mit.edu	36	3	14198160	14198160	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014463	exon2	c.C118T	p.R40X	.	.	.
ACPL2	92370	broad.mit.edu	36	3	142494450	142494450	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152282	exon8	c.C1156A	p.L386I	.	.	.
RASA2	5922	broad.mit.edu	36	3	142778576	142778576	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006506	exon15	c.C1528A	p.L510I	.	.	.
GRK7	131890	broad.mit.edu	36	3	142980015	142980015	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139209	exon1	c.C199T	p.R67C	.	.	.
ATR	545	broad.mit.edu	36	3	143698626	143698626	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184	exon33	c.G5657A	p.R1886Q	.	.	.
ATR	545	broad.mit.edu	36	3	143701223	143701223	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184	exon31	c.G5316A	p.T1772T	.	.	.
ATR	545	broad.mit.edu	36	3	143725539	143725539	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184	exon22	c.G4138T	p.D1380Y	.	.	.
ATR	545	broad.mit.edu	36	3	143751109	143751109	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184	exon15	c.C3073T	p.R1025C	.	.	.
TRPC1	7220	broad.mit.edu	36	3	144003752	144003752	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003304	exon9	c.C1531A	p.L511I	.	.	.
PCOLCE2	26577	broad.mit.edu	36	3	144031239	144031239	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013363	exon6	c.T850G	p.F284V	.	.	.
PCOLCE2	26577	broad.mit.edu	36	3	144089287	144089287	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013363	exon2	c.A106C	p.I36L	.	.	.
PAQR9	344838	broad.mit.edu	36	3	144164052	144164052	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198504	exon1	c.C817T	p.L273F	.	.	.
PAQR9	344838	broad.mit.edu	36	3	144164286	144164286	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198504	exon1	c.C583T	p.R195C	.	.	.
SR140	23350	broad.mit.edu	36	3	144224593	144224593	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080415	exon12	c.G1227A	p.E409E	.	.	.
SLC9A9	285195	broad.mit.edu	36	3	144696887	144696887	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173653	exon10	c.C1183A	p.L395I	.	.	.
SLC9A9	285195	broad.mit.edu	36	3	145033666	145033666	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173653	exon2	c.T263C	p.F88S	.	.	.
C3orf58	205428	broad.mit.edu	36	3	145187156	145187156	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173552	exon2	c.G739T	p.E247X	.	.	.
C3orf58	205428	broad.mit.edu	36	3	145187288	145187288	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173552	exon2	c.G871T	p.D291Y	.	.	.
C3orf58	205428	broad.mit.edu	36	3	145191242	145191242	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173552	exon3	c.G1162T	p.E388X	.	.	.
C3orf20	84077	broad.mit.edu	36	3	14699422	14699422	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032137	exon3	c.C198A	p.I66I	.	.	.
C3orf20	84077	broad.mit.edu	36	3	14706592	14706592	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184958	exon5	c.C344A	p.S115Y	.	.	.
C3orf20	84077	broad.mit.edu	36	3	14720920	14720920	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184958	exon7	c.G585T	p.K195N	.	.	.
PLOD2	5352	broad.mit.edu	36	3	147273079	147273079	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000935	exon16	c.G1744T	p.E582X	.	.	.
PLSCR4	57088	broad.mit.edu	36	3	147400350	147400350	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020353	exon6	c.A564C	p.T188T	.	.	.
PLSCR4	57088	broad.mit.edu	36	3	147400442	147400442	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020353	exon6	c.G472A	p.E158K	.	.	.
FGD5	152273	broad.mit.edu	36	3	14837562	14837562	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152536	exon1	c.G1980A	p.T660T	.	.	.
ZIC4	84107	broad.mit.edu	36	3	148591412	148591412	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001168378	exon4	c.G1150A	p.E384K	.	.	.
ZIC1	7545	broad.mit.edu	36	3	148611146	148611146	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003412	exon1	c.C557T	p.S186L	.	.	.
ZIC1	7545	broad.mit.edu	36	3	148611189	148611189	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003412	exon1	c.G600T	p.M200I	.	.	.
AGTR1	185	broad.mit.edu	36	3	149941927	149941927	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032049	exon3	c.C415T	p.R139X	.	.	.
AGTR1	185	broad.mit.edu	36	3	149942296	149942296	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032049	exon3	c.C784A	p.L262M	.	.	.
CPA3	1359	broad.mit.edu	36	3	150069453	150069453	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001870	exon3	c.G206A	p.R69Q	.	.	.
HLTF	6596	broad.mit.edu	36	3	150240158	150240158	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139048	exon22	c.A2515C	p.M839L	.	.	.
HLTF	6596	broad.mit.edu	36	3	150250831	150250831	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139048	exon15	c.A1495C	p.K499Q	.	.	.
HLTF	6596	broad.mit.edu	36	3	150272125	150272125	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139048	exon6	c.G637A	p.E213K	.	.	.
HPS3	84343	broad.mit.edu	36	3	150355586	150355586	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032383	exon8	c.C1403T	p.S468L	.	.	.
CP	1356	broad.mit.edu	36	3	150378910	150378910	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000096	exon16	c.G2860A	p.E954K	.	.	.
CP	1356	broad.mit.edu	36	3	150387078	150387078	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000096	exon11	c.C1996A	p.L666M	.	.	.
ZFYVE20	64145	broad.mit.edu	36	3	15091047	15091047	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022340	exon14	c.G1601T	p.R534M	.	.	.
ZFYVE20	64145	broad.mit.edu	36	3	15093607	15093607	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022340	exon12	c.G1067T	p.R356I	.	.	.
TSC22D2	9819	broad.mit.edu	36	3	151658935	151658935	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014779	exon4	c.G2165T	p.R722I	.	.	.
EIF2A	83939	broad.mit.edu	36	3	151768391	151768391	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032025	exon8	c.G562T	p.V188F	.	.	.
FAM194A	131831	broad.mit.edu	36	3	151867476	151867476	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152394	exon13	c.T1516G	p.L506V	.	.	.
CAPN7	23473	broad.mit.edu	36	3	15228700	15228700	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014296	exon2	c.G188T	p.R63I	.	.	.
MED12L	116931	broad.mit.edu	36	3	152356653	152356653	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_053002	exon5	c.C572A	p.S191Y	.	.	.
MED12L	116931	broad.mit.edu	36	3	152394082	152394082	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_053002	exon14	c.T2084G	p.F695C	.	.	.
GPR171	29909	broad.mit.edu	36	3	152399354	152399354	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013308	exon3	c.G510T	p.K170N	.	.	.
P2RY14	9934	broad.mit.edu	36	3	152413848	152413848	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014879	exon3	c.C947T	p.A316V	.	.	.
MED12L	116931	broad.mit.edu	36	3	152577563	152577563	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_053002	exon28	c.C4118A	p.S1373Y	.	.	.
MED12L	116931	broad.mit.edu	36	3	152588299	152588299	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_053002	exon35	c.C4995A	p.V1665V	.	.	.
MED12L	116931	broad.mit.edu	36	3	152613751	152613751	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_053002	exon40	c.G6170A	p.R2057Q	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152638296	152638296	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001178145	exon2	c.A824C	p.K275T	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152644018	152644018	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178822	exon5	c.G5407A	p.G1803R	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152647843	152647843	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178822	exon4	c.G2616T	p.K872N	.	.	.
AADACL2	344752	broad.mit.edu	36	3	152944590	152944590	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207365	exon3	c.C381A	p.F127L	.	.	.
AADAC	13	broad.mit.edu	36	3	153028274	153028274	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001086	exon5	c.G824T	p.S275I	.	.	.
P2RY1	5028	broad.mit.edu	36	3	154037098	154037098	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002563	exon1	c.G837T	p.M279I	.	.	.
P2RY1	5028	broad.mit.edu	36	3	154037285	154037285	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002563	exon1	c.G1024T	p.A342S	.	.	.
METTL6	131965	broad.mit.edu	36	3	15427886	15427886	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152396	exon6	c.C736T	p.R246X	.	.	.
RAP2B	5912	broad.mit.edu	36	3	154363262	154363262	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002886	exon1	c.G90T	p.E30D	.	.	.
METTL6	131965	broad.mit.edu	36	3	15442855	15442855	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152396	exon2	c.C168A	p.F56L	.	.	.
ARHGEF26	26084	broad.mit.edu	36	3	155440884	155440884	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015595	exon12	c.G2126T	p.R709I	.	.	.
ARHGEF26	26084	broad.mit.edu	36	3	155455846	155455846	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015595	exon15	c.G2510T	p.R837I	.	.	.
DHX36	170506	broad.mit.edu	36	3	155485449	155485449	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114397	exon18	c.G2011T	p.E671X	.	.	.
DHX36	170506	broad.mit.edu	36	3	155494285	155494285	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001114397	exon14	c.G1574T	p.R525I	.	.	.
GPR149	344758	broad.mit.edu	36	3	155538317	155538317	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001038705	exon4	c.C2061A	p.I687I	.	.	.
GPR149	344758	broad.mit.edu	36	3	155629285	155629285	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001038705	exon1	c.G814A	p.D272N	.	.	.
GPR149	344758	broad.mit.edu	36	3	155629443	155629443	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001038705	exon1	c.C656T	p.S219L	.	.	.
HACL1	26061	broad.mit.edu	36	3	15577377	15577377	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012260	exon17	c.A1736G	p.X579X	.	.	.
MME	4311	broad.mit.edu	36	3	156340696	156340696	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000902	exon10	c.G878A	p.R293Q	.	.	.
MME	4311	broad.mit.edu	36	3	156342724	156342724	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000902	exon12	c.C1099A	p.L367I	.	.	.
MME	4311	broad.mit.edu	36	3	156344844	156344844	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000902	exon14	c.C1320T	p.V440V	.	.	.
PLCH1	23007	broad.mit.edu	36	3	156754659	156754659	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130960	exon8	c.G1054A	p.D352N	.	.	.
PLCH1	23007	broad.mit.edu	36	3	156765542	156765542	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130960	exon7	c.G889T	p.V297L	.	.	.
C3orf33	285315	broad.mit.edu	36	3	156964306	156964306	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173657	exon6	c.C450A	p.I150I	.	.	.
C3orf33	285315	broad.mit.edu	36	3	156976252	156976252	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173657	exon4	c.G125A	p.R42Q	.	.	.
SLC33A1	9197	broad.mit.edu	36	3	157028718	157028718	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004733	exon6	c.C1625T	p.S542L	.	.	.
KCNAB1	7881	broad.mit.edu	36	3	157343783	157343783	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003471	exon1	c.C122T	p.A41V	.	.	.
TIPARP	25976	broad.mit.edu	36	3	157878778	157878778	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015508	exon2	c.C598A	p.L200M	.	.	.
TIPARP	25976	broad.mit.edu	36	3	157878906	157878906	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015508	exon2	c.T726G	p.I242M	.	.	.
TIPARP	25976	broad.mit.edu	36	3	157879048	157879048	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015508	exon2	c.G868A	p.E290K	.	.	.
LEKR1	389170	broad.mit.edu	36	3	158193654	158193654	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004316	exon9	c.G1003T	p.E335X	.	.	.
RSRC1	51319	broad.mit.edu	36	3	159403705	159403705	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016625	exon4	c.G471T	p.K157N	.	.	.
GFM1	85476	broad.mit.edu	36	3	159861446	159861446	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024996	exon10	c.C1311T	p.S437S	.	.	.
MFSD1	64747	broad.mit.edu	36	3	160014512	160014512	+	Missense_Mutation	SNP	C	A	A	rs9867246	by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022736	exon7	c.C761A	p.S254Y	.	.	.
IL12A	3592	broad.mit.edu	36	3	161194235	161194235	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000882	exon6	c.C516A	p.F172L	.	.	.
IFT80	57560	broad.mit.edu	36	3	161477849	161477849	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190242	exon17	c.C1627T	p.L543F	.	.	.
IFT80	57560	broad.mit.edu	36	3	161479695	161479695	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190242	exon15	c.A1405C	p.R469R	.	.	.
IFT80	57560	broad.mit.edu	36	3	161504446	161504446	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190242	exon10	c.A691C	p.I231L	.	.	.
SMC4	10051	broad.mit.edu	36	3	161603246	161603246	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002800	exon4	c.A407T	p.K136I	.	.	.
SMC4	10051	broad.mit.edu	36	3	161604939	161604939	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001002800	exon5	c.C640T	p.R214X	.	.	.
SMC4	10051	broad.mit.edu	36	3	161631540	161631540	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001002800	exon20	c.A2967G	p.E989E	.	.	.
TRIM59	286827	broad.mit.edu	36	3	161639017	161639017	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173084	exon3	c.G649A	p.E217K	.	.	.
KPNA4	3840	broad.mit.edu	36	3	161737306	161737306	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002268	exon2	c.G86A	p.R29Q	.	.	.
B3GALNT1	8706	broad.mit.edu	36	3	162286803	162286803	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033168	exon4	c.G434A	p.R145Q	.	.	.
GALNTL2	117248	broad.mit.edu	36	3	16235957	16235957	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_054110	exon7	c.G1436T	p.R479I	.	.	.
NMD3	51068	broad.mit.edu	36	3	162425520	162425520	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015938	exon3	c.G153A	p.S51S	.	.	.
OTOL1	131149	broad.mit.edu	36	3	162697653	162697653	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080440	exon1	c.G364T	p.G122C	.	.	.
RFTN1	23180	broad.mit.edu	36	3	16333561	16333561	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015150	exon10	c.C1515T	p.S505S	.	.	.
RFTN1	23180	broad.mit.edu	36	3	16450394	16450394	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015150	exon3	c.C300A	p.I100I	.	.	.
SI	6476	broad.mit.edu	36	3	166216450	166216450	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001041	exon32	c.G3872T	p.R1291I	.	.	.
SI	6476	broad.mit.edu	36	3	166233165	166233165	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001041	exon24	c.G2575T	p.D859Y	.	.	.
SI	6476	broad.mit.edu	36	3	166249685	166249685	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001041	exon15	c.G1639A	p.D547N	.	.	.
SLITRK3	22865	broad.mit.edu	36	3	166391053	166391053	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014926	exon2	c.A260G	p.N87S	.	.	.
SLITRK3	22865	broad.mit.edu	36	3	166391258	166391258	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014926	exon2	c.C55A	p.L19I	.	.	.
BCHE	590	broad.mit.edu	36	3	167031103	167031103	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000055	exon2	c.T413G	p.L138W	.	.	.
SERPINI2	5276	broad.mit.edu	36	3	168667540	168667540	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006217	exon3	c.G475T	p.D159Y	.	.	.
SERPINI1	5274	broad.mit.edu	36	3	168990933	168990933	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001122752	exon3	c.T330G	p.N110K	.	.	.
GOLIM4	27333	broad.mit.edu	36	3	169247452	169247452	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014498	exon3	c.G292A	p.E98K	.	.	.
PLCL2	23228	broad.mit.edu	36	3	17027234	17027234	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144382	exon3	c.A1373C	p.K458T	.	.	.
MECOM	2122	broad.mit.edu	36	3	170295672	170295672	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001105077	exon13	c.C2536T	p.R846C	.	.	.
ARPM1	84517	broad.mit.edu	36	3	170968675	170968675	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032487	exon2	c.G358T	p.E120X	.	.	.
MYNN	55892	broad.mit.edu	36	3	170979464	170979464	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018657	exon3	c.G481T	p.D161Y	.	.	.
LRRC34	151827	broad.mit.edu	36	3	170997274	170997274	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172779	exon8	c.T861C	p.C287C	.	.	.
LRRIQ4	344657	broad.mit.edu	36	3	171033480	171033480	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080460	exon4	c.T1345G	p.L449V	.	.	.
LRRIQ4	344657	broad.mit.edu	36	3	171038035	171038035	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080460	exon5	c.G1605A	p.K535K	.	.	.
LRRC31	79782	broad.mit.edu	36	3	171040550	171040550	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024727	exon9	c.C1573A	p.L525I	.	.	.
LRRC31	79782	broad.mit.edu	36	3	171052214	171052214	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024727	exon7	c.A1046G	p.K349R	.	.	.
LRRC31	79782	broad.mit.edu	36	3	171057303	171057303	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024727	exon4	c.A539T	p.N180I	.	.	.
LRRC31	79782	broad.mit.edu	36	3	171070222	171070222	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024727	exon1	c.A68C	p.K23T	.	.	.
GPR160	26996	broad.mit.edu	36	3	171284455	171284455	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014373	exon4	c.A1G	p.M1V	.	.	.
GPR160	26996	broad.mit.edu	36	3	171285199	171285199	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014373	exon4	c.C745A	p.L249I	.	.	.
PHC3	80012	broad.mit.edu	36	3	171307355	171307355	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024947	exon12	c.T2427G	p.F809L	.	.	.
SKIL	6498	broad.mit.edu	36	3	171590833	171590833	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005414	exon5	c.G1558T	p.D520Y	.	.	.
SLC7A14	57709	broad.mit.edu	36	3	171681189	171681189	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020949	exon7	c.G1576A	p.E526K	.	.	.
SLC7A14	57709	broad.mit.edu	36	3	171686798	171686798	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020949	exon5	c.C813T	p.I271I	.	.	.
SLC7A14	57709	broad.mit.edu	36	3	171727408	171727408	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020949	exon2	c.C12A	p.F4L	.	.	.
TNIK	23043	broad.mit.edu	36	3	172264434	172264434	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001161565	exon31	c.C3761T	p.S1254F	.	.	.
TNIK	23043	broad.mit.edu	36	3	172269479	172269479	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001161565	exon28	c.C3299A	p.S1100Y	.	.	.
TNIK	23043	broad.mit.edu	36	3	172311200	172311200	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001161565	exon17	c.C2029T	p.R677X	.	.	.
TNIK	23043	broad.mit.edu	36	3	172367584	172367584	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001161565	exon10	c.G943T	p.E315X	.	.	.
TBC1D5	9779	broad.mit.edu	36	3	17254693	17254693	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134380	exon17	c.G1554T	p.M518I	.	.	.
PLD1	5337	broad.mit.edu	36	3	172803608	172803608	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130081	exon26	c.C3065A	p.S1022Y	.	.	.
PLD1	5337	broad.mit.edu	36	3	172892878	172892878	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130081	exon13	c.G1276A	p.A426T	.	.	.
PLD1	5337	broad.mit.edu	36	3	172935399	172935399	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130081	exon5	c.C490T	p.P164S	.	.	.
FNDC3B	64778	broad.mit.edu	36	3	173452005	173452005	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135095	exon6	c.C770T	p.S257L	.	.	.
FNDC3B	64778	broad.mit.edu	36	3	173495851	173495851	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135095	exon8	c.C854A	p.S285Y	.	.	.
FNDC3B	64778	broad.mit.edu	36	3	173495945	173495945	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135095	exon8	c.C948T	p.Y316Y	.	.	.
FNDC3B	64778	broad.mit.edu	36	3	173546887	173546887	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135095	exon20	c.C2327A	p.S776Y	.	.	.
GHSR	2693	broad.mit.edu	36	3	173648748	173648748	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198407	exon1	c.C150T	p.C50C	.	.	.
ECT2	1894	broad.mit.edu	36	3	174017221	174017221	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018098	exon22	c.G2462A	p.R821Q	.	.	.
NLGN1	22871	broad.mit.edu	36	3	174805533	174805533	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014932	exon3	c.G451A	p.E151K	.	.	.
NLGN1	22871	broad.mit.edu	36	3	175475893	175475893	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014932	exon5	c.C741A	p.F247L	.	.	.
NAALADL2	254827	broad.mit.edu	36	3	176297693	176297693	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207015	exon2	c.C463T	p.P155S	.	.	.
NAALADL2	254827	broad.mit.edu	36	3	177003667	177003667	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207015	exon14	c.C2370A	p.V790V	.	.	.
ZMAT3	64393	broad.mit.edu	36	3	180225517	180225517	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152240	exon7	c.G849T	p.E283D	.	.	.
MFN1	55669	broad.mit.edu	36	3	180552408	180552408	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033540	exon3	c.C139T	p.R47X	.	.	.
MFN1	55669	broad.mit.edu	36	3	180579072	180579072	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033540	exon14	c.T1438G	p.L480V	.	.	.
MFN1	55669	broad.mit.edu	36	3	180586123	180586123	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033540	exon15	c.G1735T	p.E579X	.	.	.
ACTL6A	86	broad.mit.edu	36	3	180787034	180787034	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178042	exon13	c.C1003T	p.R335W	.	.	.
ACTL6A	86	broad.mit.edu	36	3	180788451	180788451	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178042	exon14	c.G1123T	p.E375X	.	.	.
MRPL47	57129	broad.mit.edu	36	3	180789407	180789407	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_177988	exon6	c.C370A	p.L124I	.	.	.
USP13	8975	broad.mit.edu	36	3	180882436	180882436	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003940	exon2	c.G245A	p.R82Q	.	.	.
USP13	8975	broad.mit.edu	36	3	180909277	180909277	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003940	exon6	c.G643A	p.D215N	.	.	.
USP13	8975	broad.mit.edu	36	3	180966252	180966252	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003940	exon19	c.G2335T	p.E779X	.	.	.
PEX5L	51555	broad.mit.edu	36	3	181008271	181008271	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016559	exon14	c.G1561A	p.G521R	.	.	.
TTC14	151613	broad.mit.edu	36	3	181803729	181803729	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133462	exon3	c.G410A	p.R137Q	.	.	.
TTC14	151613	broad.mit.edu	36	3	181803797	181803797	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133462	exon3	c.G478T	p.E160X	.	.	.
CCDC39	339829	broad.mit.edu	36	3	181819815	181819815	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181426	exon16	c.G2191T	p.E731X	.	.	.
ATP11B	23200	broad.mit.edu	36	3	184036584	184036584	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014616	exon5	c.G383A	p.R128Q	.	.	.
ATP11B	23200	broad.mit.edu	36	3	184067889	184067889	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014616	exon15	c.G1651T	p.E551X	.	.	.
SATB1	6304	broad.mit.edu	36	3	18413684	18413684	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002971	exon6	c.G742T	p.D248Y	.	.	.
DCUN1D1	54165	broad.mit.edu	36	3	184166202	184166202	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020640	exon2	c.C37T	p.R13C	.	.	.
MCCC1	56922	broad.mit.edu	36	3	184242169	184242169	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020166	exon11	c.G1147A	p.E383K	.	.	.
LAMP3	27074	broad.mit.edu	36	3	184354405	184354405	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014398	exon2	c.C518T	p.S173L	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184406632	184406632	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015078	exon24	c.G2777A	p.R926Q	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184416565	184416565	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015078	exon22	c.G2382T	p.K794N	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184539308	184539308	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015078	exon5	c.C460A	p.R154R	.	.	.
YEATS2	55689	broad.mit.edu	36	3	184922420	184922420	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018023	exon5	c.G339T	p.K113N	.	.	.
PARL	55486	broad.mit.edu	36	3	185067121	185067121	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001037639	exon3	c.G448T	p.D150Y	.	.	.
ABCC5	10057	broad.mit.edu	36	3	185188341	185188341	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001023587	exon5	c.C502T	p.R168X	.	.	.
DVL3	1857	broad.mit.edu	36	3	185365381	185365381	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004423	exon5	c.C567A	p.F189L	.	.	.
ECE2	9718	broad.mit.edu	36	3	185458123	185458123	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014693	exon2	c.C365T	p.A122V	.	.	.
PSMD2	5708	broad.mit.edu	36	3	185502108	185502108	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002808	exon4	c.G447T	p.E149D	.	.	.
EIF4G1	1981	broad.mit.edu	36	3	185517937	185517937	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182917	exon4	c.C282A	p.I94I	.	.	.
EIF4G1	1981	broad.mit.edu	36	3	185522269	185522269	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182917	exon9	c.G1203T	p.E401D	.	.	.
THPO	7066	broad.mit.edu	36	3	185573016	185573016	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001177597	exon6	c.G1029T	p.Q343H	.	.	.
VPS8	23355	broad.mit.edu	36	3	186040217	186040217	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001009921	exon7	c.G518T	p.G173V	.	.	.
C3orf70	285382	broad.mit.edu	36	3	186283503	186283503	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001025266	exon2	c.G739T	p.E247X	.	.	.
C3orf70	285382	broad.mit.edu	36	3	186283678	186283678	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001025266	exon2	c.G564T	p.E188D	.	.	.
LIPH	200879	broad.mit.edu	36	3	186712039	186712039	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139248	exon9	c.G1235A	p.R412Q	.	.	.
SENP2	59343	broad.mit.edu	36	3	186815146	186815146	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021627	exon11	c.T1034A	p.I345K	.	.	.
TRA2B	6434	broad.mit.edu	36	3	187126085	187126085	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004593	exon3	c.G194A	p.R65Q	.	.	.
DGKG	1608	broad.mit.edu	36	3	187498584	187498584	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080744	exon4	c.G273A	p.P91P	.	.	.
CRYGS	1427	broad.mit.edu	36	3	187739906	187739906	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017541	exon2	c.G196T	p.E66X	.	.	.
TBCCD1	55171	broad.mit.edu	36	3	187764584	187764584	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134415	exon2	c.G229A	p.E77K	.	.	.
FETUB	26998	broad.mit.edu	36	3	187845352	187845352	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014375	exon4	c.G543T	p.E181D	.	.	.
HRG	3273	broad.mit.edu	36	3	187877699	187877699	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000412	exon7	c.G911T	p.R304I	.	.	.
KNG1	3827	broad.mit.edu	36	3	187942776	187942776	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102416	exon10	c.G1897T	p.E633X	.	.	.
RTP1	132112	broad.mit.edu	36	3	188398127	188398127	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153708	exon1	c.G130T	p.D44Y	.	.	.
MASP1	5648	broad.mit.edu	36	3	188425950	188425950	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001879	exon13	c.C1597A	p.L533I	.	.	.
RTP4	64108	broad.mit.edu	36	3	188571432	188571432	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022147	exon2	c.C318A	p.F106L	.	.	.
BCL6	604	broad.mit.edu	36	3	188929882	188929882	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130845	exon5	c.G1005T	p.Q335H	.	.	.
LPP	4026	broad.mit.edu	36	3	190066740	190066740	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001167671	exon9	c.C1469T	p.A490V	.	.	.
TP63	8626	broad.mit.edu	36	3	190938302	190938302	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114979	exon2	c.G142T	p.E48X	.	.	.
TP63	8626	broad.mit.edu	36	3	191067227	191067227	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114980	exon4	c.G547T	p.E183X	.	.	.
LEPREL1	55214	broad.mit.edu	36	3	191195913	191195914	+	Missense_Mutation	DNP	CG	TA	TA	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018192	exon2	c.492_493TA	.	.	.	.
IL1RAP	3556	broad.mit.edu	36	3	191846229	191846229	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001167929	exon10	c.G1249T	p.E417X	.	.	.
OSTN	344901	broad.mit.edu	36	3	192450546	192450546	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198184	exon3	c.G344A	p.R115Q	.	.	.
CCDC50	152137	broad.mit.edu	36	3	192558500	192558500	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_174908	exon3	c.G132A	p.S44S	.	.	.
CCDC50	152137	broad.mit.edu	36	3	192581321	192581321	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174908	exon8	c.G620A	p.R207Q	.	.	.
FGF12	2257	broad.mit.edu	36	3	193344588	193344588	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004113	exon6	c.G450A	p.S150S	.	.	.
ATP13A5	344905	broad.mit.edu	36	3	194545492	194545492	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198505	exon8	c.G808T	p.D270Y	.	.	.
KCNH8	131096	broad.mit.edu	36	3	19473421	19473421	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144633	exon11	c.C1983T	p.F661F	.	.	.
KCNH8	131096	broad.mit.edu	36	3	19550278	19550278	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144633	exon16	c.G3007T	p.E1003X	.	.	.
ATP13A3	79572	broad.mit.edu	36	3	195661862	195661862	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024524	exon4	c.C353T	p.P118L	.	.	.
ACAP2	23527	broad.mit.edu	36	3	196510848	196510848	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012287	exon11	c.T865C	p.F289L	.	.	.
ACAP2	23527	broad.mit.edu	36	3	196538985	196538985	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012287	exon7	c.C538A	p.L180I	.	.	.
PPP1R2	5504	broad.mit.edu	36	3	196727182	196727182	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006241	exon5	c.C493A	p.L165I	.	.	.
APOD	347	broad.mit.edu	36	3	196777262	196777262	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001647	exon5	c.C368T	p.T123I	.	.	.
MUC4	4585	broad.mit.edu	36	3	196959838	196959838	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138297	exon23	c.C3258A	p.F1086L	.	.	.
MUC4	4585	broad.mit.edu	36	3	196971751	196971751	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138297	exon15	c.G2040A	p.G680G	.	.	.
MUC4	4585	broad.mit.edu	36	3	196979278	196979278	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138297	exon6	c.C684T	p.F228F	.	.	.
MUC4	4585	broad.mit.edu	36	3	197001216	197001216	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018406	exon2	c.G1630T	p.E544X	.	.	.
OSTalpha	200931	broad.mit.edu	36	3	197444397	197444397	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152672	exon9	c.G953A	p.R318Q	.	.	.
TM4SF19	116211	broad.mit.edu	36	3	197535575	197535575	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138461	exon4	c.G413A	p.W138X	.	.	.
TM4SF19	116211	broad.mit.edu	36	3	197538266	197538266	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138461	exon3	c.G236T	p.G79V	.	.	.
UBXN7	26043	broad.mit.edu	36	3	197618644	197618644	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015562	exon2	c.G91T	p.G31X	.	.	.
WDR53	348793	broad.mit.edu	36	3	197772458	197772458	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182627	exon3	c.G286T	p.E96X	.	.	.
FBXO45	200933	broad.mit.edu	36	3	197795442	197795442	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001105573	exon3	c.G717T	p.K239N	.	.	.
LRRC33	375387	broad.mit.edu	36	3	197872844	197872844	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198565	exon3	c.C1933T	p.R645W	.	.	.
C3orf34	84984	broad.mit.edu	36	3	197918905	197918905	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032898	exon3	c.T418A	p.F140I	.	.	.
PIGX	54965	broad.mit.edu	36	3	197933741	197933741	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017861	exon3	c.C235A	p.L79I	.	.	.
PIGX	54965	broad.mit.edu	36	3	197939361	197939361	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017861	exon4	c.G489A	p.S163S	.	.	.
PIGX	54965	broad.mit.edu	36	3	197942305	197942305	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017861	exon5	c.C578A	p.P193H	.	.	.
PAK2	5062	broad.mit.edu	36	3	197993930	197993930	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002577	exon2	c.G16T	p.E6X	.	.	.
SENP5	205564	broad.mit.edu	36	3	198096804	198096804	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152699	exon2	c.C355A	p.L119M	.	.	.
SENP5	205564	broad.mit.edu	36	3	198111016	198111016	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152699	exon3	c.C1596A	p.V532V	.	.	.
KIAA0226	9711	broad.mit.edu	36	3	198911913	198911913	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014687	exon7	c.C1229T	p.S410L	.	.	.
LRCH3	84859	broad.mit.edu	36	3	199026197	199026197	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032773	exon2	c.C284A	p.S95X	.	.	.
LMLN	89782	broad.mit.edu	36	3	199186328	199186328	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033029	exon3	c.G336T	p.K112N	.	.	.
LMLN	89782	broad.mit.edu	36	3	199207453	199207453	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033029	exon10	c.G1058A	p.R353Q	.	.	.
KAT2B	8850	broad.mit.edu	36	3	20162851	20162851	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003884	exon14	c.C2044T	p.R682X	.	.	.
KAT2B	8850	broad.mit.edu	36	3	20164939	20164939	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003884	exon17	c.G2261T	p.R754I	.	.	.
SGOL1	151648	broad.mit.edu	36	3	20190785	20190785	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001012409	exon6	c.A1242C	p.E414D	.	.	.
ZNF385D	79750	broad.mit.edu	36	3	21453519	21453519	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024697	exon5	c.C620T	p.S207L	.	.	.
ZNF385D	79750	broad.mit.edu	36	3	21453643	21453643	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024697	exon5	c.A496T	p.S166C	.	.	.
NKIRAS1	28512	broad.mit.edu	36	3	23909596	23909596	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020345	exon5	c.G573T	p.E191D	.	.	.
NR1D2	9975	broad.mit.edu	36	3	23976305	23976305	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005126	exon4	c.G512T	p.R171I	.	.	.
NR1D2	9975	broad.mit.edu	36	3	23978821	23978821	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005126	exon5	c.G867T	p.K289N	.	.	.
TOP2B	7155	broad.mit.edu	36	3	25614887	25614887	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001068	exon36	c.G4781A	p.R1594Q	.	.	.
TOP2B	7155	broad.mit.edu	36	3	25621336	25621336	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001068	exon33	c.G4393T	p.D1465Y	.	.	.
TOP2B	7155	broad.mit.edu	36	3	25626073	25626073	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001068	exon29	c.G3906T	p.K1302N	.	.	.
TOP2B	7155	broad.mit.edu	36	3	25645604	25645604	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001068	exon14	c.A1711C	p.N571H	.	.	.
NGLY1	55768	broad.mit.edu	36	3	25750396	25750396	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145294	exon8	c.C1105T	p.R369X	.	.	.
NEK10	152110	broad.mit.edu	36	3	27301184	27301184	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199347	exon23	c.C1927T	p.R643X	.	.	.
NEK10	152110	broad.mit.edu	36	3	27318251	27318251	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199347	exon14	c.C1108A	p.H370N	.	.	.
NEK10	152110	broad.mit.edu	36	3	27360845	27360845	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199347	exon6	c.G284T	p.R95I	.	.	.
SLC4A7	9497	broad.mit.edu	36	3	27428236	27428236	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003615	exon12	c.G1640T	p.R547I	.	.	.
SLC4A7	9497	broad.mit.edu	36	3	27435093	27435093	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003615	exon11	c.G1520T	p.R507I	.	.	.
ZCWPW2	152098	broad.mit.edu	36	3	28429575	28429575	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040432	exon2	c.A12C	p.E4D	.	.	.
ZCWPW2	152098	broad.mit.edu	36	3	28532067	28532067	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040432	exon7	c.C735T	p.C245C	.	.	.
RBMS3	27303	broad.mit.edu	36	3	29451324	29451324	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001003793	exon2	c.C162T	p.S54S	.	.	.
CNTN4	152330	broad.mit.edu	36	3	3055651	3055651	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175613	exon10	c.C1143T	p.G381G	.	.	.
CNTN4	152330	broad.mit.edu	36	3	3059058	3059058	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175613	exon12	c.C1479A	p.F493L	.	.	.
CNTN4	152330	broad.mit.edu	36	3	3072904	3072904	+	Nonstop_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175613	exon16	c.A2097G	p.X699W	.	.	.
IL5RA	3568	broad.mit.edu	36	3	3119448	3119448	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000564	exon5	c.C139A	p.L47I	.	.	.
STT3B	201595	broad.mit.edu	36	3	31641429	31641429	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178862	exon12	c.G1747T	p.D583Y	.	.	.
TRNT1	51095	broad.mit.edu	36	3	3164809	3164809	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182916	exon8	c.G1276T	p.E426X	.	.	.
OSBPL10	114884	broad.mit.edu	36	3	31700529	31700529	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017784	exon8	c.C1327T	p.L443L	.	.	.
CRBN	51185	broad.mit.edu	36	3	3190804	3190804	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001173482	exon3	c.G313T	p.E105X	.	.	.
GPD1L	23171	broad.mit.edu	36	3	32182375	32182375	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015141	exon8	c.C1025A	p.S342Y	.	.	.
TRIM71	131405	broad.mit.edu	36	3	32908291	32908291	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039111	exon4	c.G2591A	p.R864Q	.	.	.
UBP1	7342	broad.mit.edu	36	3	33413620	33413620	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128161	exon13	c.T1192G	p.L398V	.	.	.
CLASP2	23122	broad.mit.edu	36	3	33515156	33515156	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015097	exon38	c.C4492T	p.P1498S	.	.	.
CLASP2	23122	broad.mit.edu	36	3	33620691	33620691	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015097	exon17	c.C1709T	p.S570F	.	.	.
CLASP2	23122	broad.mit.edu	36	3	33623236	33623236	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015097	exon16	c.A1545C	p.R515S	.	.	.
PDCD6IP	10015	broad.mit.edu	36	3	33852670	33852670	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001162429	exon8	c.G980A	p.R327Q	.	.	.
PDCD6IP	10015	broad.mit.edu	36	3	33860647	33860647	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001162429	exon11	c.G1414T	p.D472Y	.	.	.
CHL1	10752	broad.mit.edu	36	3	358609	358609	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006614	exon7	c.G523A	p.E175K	.	.	.
CHL1	10752	broad.mit.edu	36	3	361290	361290	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006614	exon9	c.G746T	p.R249I	.	.	.
STAC	6769	broad.mit.edu	36	3	36459898	36459898	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003149	exon2	c.G150T	p.K50N	.	.	.
STAC	6769	broad.mit.edu	36	3	36562689	36562689	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003149	exon11	c.C1113A	p.I371I	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36847798	36847798	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014831	exon21	c.A8148C	p.K2716N	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36849381	36849381	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014831	exon21	c.G6565A	p.G2189R	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36849782	36849782	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014831	exon21	c.A6164C	p.K2055T	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36850035	36850035	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014831	exon21	c.G5911T	p.E1971X	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36850275	36850275	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014831	exon21	c.G5671T	p.D1891Y	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36851279	36851279	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014831	exon20	c.G5509T	p.E1837X	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36859150	36859150	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014831	exon17	c.G5115T	p.Q1705H	.	.	.
EPM2AIP1	9852	broad.mit.edu	36	3	37008003	37008003	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014805	exon1	c.G1570T	p.D524Y	.	.	.
EPM2AIP1	9852	broad.mit.edu	36	3	37008215	37008215	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014805	exon1	c.A1358C	p.K453T	.	.	.
MLH1	4292	broad.mit.edu	36	3	37031029	37031029	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000249	exon9	c.C780T	p.L260L	.	.	.
MLH1	4292	broad.mit.edu	36	3	37058790	37058790	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000249	exon15	c.T1695G	p.I565M	.	.	.
MLH1	4292	broad.mit.edu	36	3	37065087	37065087	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000249	exon17	c.C1972A	p.L658I	.	.	.
LRRFIP2	9209	broad.mit.edu	36	3	37100151	37100151	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017724	exon7	c.G490T	p.E164X	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37342054	37342054	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172713	exon15	c.G3739A	p.E1247K	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37342989	37342989	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172713	exon15	c.G4674T	p.Q1558H	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37343062	37343062	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172713	exon15	c.G4747T	p.E1583X	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37343238	37343238	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172713	exon15	c.G4923T	p.E1641D	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37343336	37343336	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172713	exon15	c.A5021C	p.K1674T	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37344295	37344295	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172713	exon15	c.G5980T	p.D1994Y	.	.	.
C3orf35	339883	broad.mit.edu	36	3	37451602	37451602	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178339	exon6	c.G490T	p.E164X	.	.	.
ITGA9	3680	broad.mit.edu	36	3	37766976	37766976	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002207	exon23	c.G2453T	p.S818I	.	.	.
ITGA9	3680	broad.mit.edu	36	3	37801479	37801479	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002207	exon26	c.C2795T	p.S932L	.	.	.
PLCD1	5333	broad.mit.edu	36	3	38024578	38024578	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006225	exon14	c.G2116T	p.D706Y	.	.	.
DLEC1	9940	broad.mit.edu	36	3	38078779	38078779	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007337	exon4	c.C789T	p.F263F	.	.	.
DLEC1	9940	broad.mit.edu	36	3	38100718	38100718	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007337	exon7	c.G1239A	p.T413T	.	.	.
ACAA1	30	broad.mit.edu	36	3	38142348	38142348	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130410	exon8	c.C747T	p.F249F	.	.	.
MYD88	4615	broad.mit.edu	36	3	38157660	38157660	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172568	exon4	c.A674G	p.Y225C	.	.	.
SLC22A13	9390	broad.mit.edu	36	3	38292849	38292849	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004256	exon8	c.C1305A	p.I435I	.	.	.
SLC22A14	9389	broad.mit.edu	36	3	38323016	38323016	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004803	exon1	c.G495T	p.K165N	.	.	.
EXOG	9941	broad.mit.edu	36	3	38512911	38512911	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145464	exon1	c.C49A	p.L17M	.	.	.
LRRN1	57633	broad.mit.edu	36	3	3862235	3862235	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020873	exon2	c.G910A	p.D304N	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38649678	38649678	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099405	exon2	c.G125T	p.S42I	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38714773	38714773	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006514	exon27	c.G4942A	p.A1648T	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38728921	38728921	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006514	exon22	c.T3824C	p.V1275A	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38743350	38743350	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006514	exon16	c.G2838A	p.E946E	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38743451	38743451	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006514	exon16	c.G2737A	p.A913T	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38766659	38766659	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006514	exon12	c.G1776T	p.K592N	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38768928	38768928	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006514	exon11	c.T1541G	p.I514S	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38768992	38768992	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006514	exon11	c.G1477A	p.A493T	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38777859	38777859	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006514	exon6	c.G711A	p.G237G	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38810246	38810246	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006514	exon1	c.G260A	p.S87N	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38863588	38863588	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014139	exon26	c.C4977T	p.V1659V	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38864022	38864022	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014139	exon26	c.G4543T	p.G1515C	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38867223	38867223	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014139	exon25	c.C4080T	p.F1360F	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38901868	38901868	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014139	exon17	c.A2979C	p.E993D	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38902676	38902676	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014139	exon16	c.G2893T	p.E965X	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38925673	38925673	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014139	exon9	c.G1118T	p.G373V	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38961940	38961940	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014139	exon3	c.A454G	p.K152E	.	.	.
TTC21A	199223	broad.mit.edu	36	3	39152906	39152906	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001105513	exon22	c.T2876G	p.L959R	.	.	.
XIRP1	165904	broad.mit.edu	36	3	39205657	39205657	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_194293	exon2	c.G284A	p.R95H	.	.	.
CX3CR1	1524	broad.mit.edu	36	3	39282693	39282693	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001171174	exon2	c.C408A	p.F136L	.	.	.
CHL1	10752	broad.mit.edu	36	3	400551	400551	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006614	exon19	c.A2229C	p.E743D	.	.	.
ZNF621	285268	broad.mit.edu	36	3	40549081	40549081	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098414	exon5	c.C816T	p.F272F	.	.	.
ULK4	54986	broad.mit.edu	36	3	41734325	41734325	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017886	exon23	c.A2354C	p.K785T	.	.	.
ULK4	54986	broad.mit.edu	36	3	41929316	41929316	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017886	exon9	c.G883T	p.D295Y	.	.	.
TRAK1	22906	broad.mit.edu	36	3	42217370	42217370	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042646	exon12	c.G1247T	p.R416I	.	.	.
CHL1	10752	broad.mit.edu	36	3	422193	422193	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006614	exon28	c.G3474T	p.K1158N	.	.	.
TRAK1	22906	broad.mit.edu	36	3	42226397	42226397	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042646	exon14	c.G1879A	p.D627N	.	.	.
VIPR1	7433	broad.mit.edu	36	3	42548769	42548769	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004624	exon10	c.G950A	p.R317Q	.	.	.
NKTR	4820	broad.mit.edu	36	3	42656075	42656075	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005385	exon13	c.G3875T	p.R1292I	.	.	.
KBTBD5	131377	broad.mit.edu	36	3	42704764	42704764	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152393	exon2	c.C1279T	p.R427C	.	.	.
CCDC13	152206	broad.mit.edu	36	3	42763761	42763761	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144719	exon6	c.G712A	p.A238T	.	.	.
CCBP2	1238	broad.mit.edu	36	3	42881244	42881244	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001296	exon3	c.G246T	p.E82D	.	.	.
ZNF662	389114	broad.mit.edu	36	3	42931259	42931259	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134656	exon4	c.T768C	p.S256S	.	.	.
SETMAR	6419	broad.mit.edu	36	3	4330431	4330431	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006515	exon2	c.C1006T	p.R336X	.	.	.
SNRK	54861	broad.mit.edu	36	3	43356808	43356808	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017719	exon5	c.G757T	p.D253Y	.	.	.
ANO10	55129	broad.mit.edu	36	3	43571807	43571807	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018075	exon10	c.C1635T	p.F545F	.	.	.
ZNF445	353274	broad.mit.edu	36	3	44464123	44464123	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181489	exon8	c.C2044A	p.L682M	.	.	.
ZNF445	353274	broad.mit.edu	36	3	44464821	44464821	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181489	exon8	c.G1346T	p.R449I	.	.	.
ZNF167	55888	broad.mit.edu	36	3	44584847	44584847	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025169	exon5	c.G729A	p.K243K	.	.	.
ZNF167	55888	broad.mit.edu	36	3	44586920	44586920	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018651	exon6	c.C1314A	p.P438P	.	.	.
ZNF167	55888	broad.mit.edu	36	3	44587654	44587654	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018651	exon6	c.G2048T	p.R683I	.	.	.
ZNF167	55888	broad.mit.edu	36	3	44587836	44587836	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018651	exon6	c.G2230T	p.E744X	.	.	.
ZNF660	285349	broad.mit.edu	36	3	44611565	44611565	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173658	exon3	c.C876T	p.H292H	.	.	.
ZNF197	10168	broad.mit.edu	36	3	44648983	44648983	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001024855	exon5	c.C657T	p.F219F	.	.	.
ZNF197	10168	broad.mit.edu	36	3	44658655	44658655	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006991	exon6	c.G1029T	p.K343N	.	.	.
ZNF502	91392	broad.mit.edu	36	3	44737974	44737974	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033210	exon4	c.C661T	p.R221X	.	.	.
ZNF501	115560	broad.mit.edu	36	3	44751701	44751701	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145044	exon3	c.C784A	p.L262I	.	.	.
KIAA1143	57456	broad.mit.edu	36	3	44770816	44770816	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020696	exon2	c.G157T	p.E53X	.	.	.
KIF15	56992	broad.mit.edu	36	3	44816857	44816857	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020242	exon11	c.T1146G	p.A382A	.	.	.
KIF15	56992	broad.mit.edu	36	3	44857666	44857666	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020242	exon29	c.T3517G	p.L1173V	.	.	.
TGM4	7047	broad.mit.edu	36	3	44920386	44920386	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003241	exon9	c.C978A	p.F326L	.	.	.
TGM4	7047	broad.mit.edu	36	3	44923521	44923521	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003241	exon10	c.C1152T	p.F384F	.	.	.
EXOSC7	23016	broad.mit.edu	36	3	45005722	45005722	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015004	exon2	c.C144A	p.S48S	.	.	.
LARS2	23395	broad.mit.edu	36	3	45416746	45416746	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015340	exon4	c.G240A	p.S80S	.	.	.
SACM1L	22908	broad.mit.edu	36	3	45726132	45726132	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014016	exon5	c.C472A	p.L158I	.	.	.
SACM1L	22908	broad.mit.edu	36	3	45760126	45760126	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014016	exon20	c.C1725T	p.V575V	.	.	.
CCR9	10803	broad.mit.edu	36	3	45918019	45918019	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006641	exon2	c.G699T	p.K233N	.	.	.
FYCO1	79443	broad.mit.edu	36	3	45989661	45989661	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024513	exon6	c.C462A	p.L154L	.	.	.
CCR3	1232	broad.mit.edu	36	3	46282081	46282081	+	Missense_Mutation	SNP	G	A	A	rs56177184	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178328	exon3	c.G491A	p.R164Q	.	.	.
CCR3	1232	broad.mit.edu	36	3	46282370	46282370	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178328	exon3	c.G780A	p.R260R	.	.	.
LRRC2	79442	broad.mit.edu	36	3	46549383	46549383	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024512	exon5	c.G511T	p.E171X	.	.	.
LRRC2	79442	broad.mit.edu	36	3	46561719	46561719	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024512	exon3	c.G154A	p.E52K	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4674844	4674844	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099952	exon13	c.C1033T	p.R345W	.	.	.
CCDC12	151903	broad.mit.edu	36	3	46938760	46938760	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144716	exon6	c.C427T	p.R143W	.	.	.
SETD2	29072	broad.mit.edu	36	3	47073952	47073952	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014159	exon15	c.G6326A	p.R2109Q	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4710223	4710223	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099952	exon33	c.C4052A	p.S1351Y	.	.	.
SETD2	29072	broad.mit.edu	36	3	47133135	47133135	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014159	exon4	c.G4568A	p.R1523H	.	.	.
SETD2	29072	broad.mit.edu	36	3	47136968	47136968	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014159	exon3	c.G4162T	p.D1388Y	.	.	.
SETD2	29072	broad.mit.edu	36	3	47139581	47139581	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014159	exon3	c.G1549T	p.E517X	.	.	.
KIF9	64147	broad.mit.edu	36	3	47253105	47253105	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182902	exon18	c.G1933A	p.E645K	.	.	.
KLHL18	23276	broad.mit.edu	36	3	47339195	47339195	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025010	exon3	c.C394T	p.R132X	.	.	.
SCAP	22937	broad.mit.edu	36	3	47437482	47437482	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012235	exon11	c.C1287A	p.F429L	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4783230	4783230	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099952	exon42	c.G5417A	p.R1806H	.	.	.
DHX30	22907	broad.mit.edu	36	3	47843877	47843877	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138615	exon5	c.A161C	p.K54T	.	.	.
DHX30	22907	broad.mit.edu	36	3	47866178	47866178	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138615	exon21	c.C3246A	p.S1082S	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4792094	4792094	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099952	exon44	c.G6004A	p.E2002K	.	.	.
MAP4	4134	broad.mit.edu	36	3	47931318	47931318	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134364	exon8	c.G1992T	p.E664D	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4829834	4829834	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099952	exon54	c.G7333A	p.E2445K	.	.	.
NME6	10201	broad.mit.edu	36	3	48313305	48313305	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005793	exon3	c.C133A	p.L45I	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4831740	4831740	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099952	exon56	c.C7561T	p.P2521S	.	.	.
FBXW12	285231	broad.mit.edu	36	3	48389808	48389808	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207102	exon3	c.A97G	p.N33D	.	.	.
PLXNB1	5364	broad.mit.edu	36	3	48428932	48428932	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002673	exon26	c.C4956T	p.F1652F	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48577262	48577262	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000094	exon117	c.G8776A	p.E2926K	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48594923	48594923	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000094	exon45	c.G4591T	p.G1531X	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48605050	48605050	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000094	exon7	c.C933T	p.Y311Y	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48606010	48606010	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000094	exon3	c.C390A	p.V130V	.	.	.
SLC25A20	788	broad.mit.edu	36	3	48904432	48904432	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000387	exon2	c.G183T	p.K61N	.	.	.
ARIH2	10425	broad.mit.edu	36	3	48983131	48983131	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006321	exon8	c.G760A	p.E254K	.	.	.
IMPDH2	3615	broad.mit.edu	36	3	49039473	49039473	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000884	exon6	c.G543T	p.K181N	.	.	.
IMPDH2	3615	broad.mit.edu	36	3	49040912	49040912	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000884	exon3	c.C205T	p.P69S	.	.	.
QRICH1	54870	broad.mit.edu	36	3	49056899	49056899	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198880	exon6	c.C1714A	p.L572I	.	.	.
QRICH1	54870	broad.mit.edu	36	3	49059555	49059555	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198880	exon4	c.G1467T	p.K489N	.	.	.
LAMB2	3913	broad.mit.edu	36	3	49138564	49138564	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002292	exon17	c.G2184T	p.E728D	.	.	.
LAMB2	3913	broad.mit.edu	36	3	49144834	49144834	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002292	exon3	c.G258T	p.K86N	.	.	.
CCDC36	339834	broad.mit.edu	36	3	49267920	49267920	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178173	exon9	c.G626T	p.R209I	.	.	.
C3orf62	375341	broad.mit.edu	36	3	49289049	49289049	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198562	exon1	c.G261A	p.E87E	.	.	.
TCTA	6988	broad.mit.edu	36	3	49427273	49427273	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022171	exon3	c.G286A	p.E96K	.	.	.
DAG1	1605	broad.mit.edu	36	3	49544448	49544448	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004393	exon3	c.G1500T	p.K500N	.	.	.
BSN	8927	broad.mit.edu	36	3	49665871	49665871	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003458	exon5	c.C3878A	p.A1293D	.	.	.
RNF123	63891	broad.mit.edu	36	3	49712754	49712754	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022064	exon13	c.C1075T	p.H359Y	.	.	.
RBM6	10180	broad.mit.edu	36	3	50070859	50070859	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005777	exon10	c.T1990C	p.Y664H	.	.	.
RBM6	10180	broad.mit.edu	36	3	50078857	50078857	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005777	exon17	c.A2861C	p.K954T	.	.	.
RBM6	10180	broad.mit.edu	36	3	50087663	50087663	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005777	exon20	c.G3142T	p.D1048Y	.	.	.
RBM5	10181	broad.mit.edu	36	3	50130777	50130777	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005778	exon25	c.C2332T	p.R778W	.	.	.
SLC38A3	10991	broad.mit.edu	36	3	50227841	50227841	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006841	exon5	c.G319A	p.A107T	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51087897	51087897	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004947	exon7	c.G494T	p.R165I	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51171753	51171753	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004947	exon11	c.C826T	p.R276C	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51173150	51173150	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004947	exon12	c.G973T	p.G325X	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51239903	51239903	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004947	exon16	c.C1486A	p.Q496K	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51287568	51287568	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004947	exon25	c.T2526G	p.A842A	.	.	.
RBM15B	29890	broad.mit.edu	36	3	51406345	51406345	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013286	exon1	c.C2475A	p.V825V	.	.	.
VPRBP	9730	broad.mit.edu	36	3	51452957	51452957	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001171904	exon6	c.G375T	p.E125D	.	.	.
VPRBP	9730	broad.mit.edu	36	3	51480056	51480056	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001171904	exon3	c.C116A	p.S39Y	.	.	.
IQCF2	389123	broad.mit.edu	36	3	51870732	51870732	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203424	exon1	c.C10T	p.R4X	.	.	.
IQCF1	132141	broad.mit.edu	36	3	51903952	51903952	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152397	exon4	c.G612T	p.K204N	.	.	.
IQCF1	132141	broad.mit.edu	36	3	51904027	51904027	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152397	exon4	c.G537A	p.Q179Q	.	.	.
RRP9	9136	broad.mit.edu	36	3	51947192	51947192	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004704	exon3	c.T239C	p.L80P	.	.	.
DUSP7	1849	broad.mit.edu	36	3	52063054	52063054	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001947	exon2	c.C894A	p.I298I	.	.	.
EDEM1	9695	broad.mit.edu	36	3	5221800	5221800	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014674	exon6	c.G1091A	p.G364D	.	.	.
TLR9	54106	broad.mit.edu	36	3	52230698	52230698	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017442	exon2	c.C2674T	p.R892W	.	.	.
TLR9	54106	broad.mit.edu	36	3	52231426	52231426	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017442	exon2	c.G1946A	p.R649H	.	.	.
EDEM1	9695	broad.mit.edu	36	3	5226868	5226868	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014674	exon9	c.G1518T	p.K506N	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52365773	52365773	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015512	exon22	c.G3797A	p.R1266H	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52378986	52378986	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015512	exon38	c.C6049T	p.P2017S	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52387687	52387687	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015512	exon47	c.G7228A	p.E2410K	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52392515	52392515	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015512	exon51	c.C8015T	p.A2672V	.	.	.
NISCH	11188	broad.mit.edu	36	3	52501325	52501325	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007184	exon21	c.C4302T	p.F1434F	.	.	.
PBRM1	55193	broad.mit.edu	36	3	52677641	52677641	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018313	exon4	c.G297A	p.Q99Q	.	.	.
NEK4	6787	broad.mit.edu	36	3	52774972	52774972	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193533	exon3	c.T370C	p.S124P	.	.	.
ITIH1	3697	broad.mit.edu	36	3	52791233	52791233	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166434	exon6	c.C414A	p.F138L	.	.	.
ITIH1	3697	broad.mit.edu	36	3	52798832	52798832	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166434	exon17	c.C1817A	p.P606H	.	.	.
SFMBT1	51460	broad.mit.edu	36	3	52920182	52920182	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005158	exon18	c.C1783T	p.R595W	.	.	.
SFMBT1	51460	broad.mit.edu	36	3	52922582	52922582	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005158	exon16	c.G1572A	p.E524E	.	.	.
SFMBT1	51460	broad.mit.edu	36	3	52952493	52952493	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005158	exon5	c.G280A	p.D94N	.	.	.
CACNA1D	776	broad.mit.edu	36	3	53506498	53506498	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128839	exon2	c.G347A	p.R116Q	.	.	.
ACTR8	93973	broad.mit.edu	36	3	53882122	53882122	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022899	exon9	c.C1138T	p.R380X	.	.	.
ACTR8	93973	broad.mit.edu	36	3	53885025	53885025	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022899	exon7	c.C901T	p.R301W	.	.	.
CACNA2D3	55799	broad.mit.edu	36	3	54761669	54761669	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018398	exon12	c.C1171T	p.R391C	.	.	.
CACNA2D3	55799	broad.mit.edu	36	3	54847686	54847686	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018398	exon16	c.G1522T	p.E508X	.	.	.
CACNA2D3	55799	broad.mit.edu	36	3	54897046	54897046	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018398	exon24	c.G2077T	p.E693X	.	.	.
CACNA2D3	55799	broad.mit.edu	36	3	54908907	54908907	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018398	exon27	c.G2421A	p.L807L	.	.	.
LRTM1	57408	broad.mit.edu	36	3	54933686	54933686	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020678	exon2	c.G604T	p.G202W	.	.	.
CACNA2D3	55799	broad.mit.edu	36	3	55027328	55027328	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018398	exon35	c.C2931A	p.V977V	.	.	.
ERC2	26059	broad.mit.edu	36	3	55743902	55743902	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015576	exon14	c.G2643A	p.T881T	.	.	.
ERC2	26059	broad.mit.edu	36	3	55897579	55897579	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015576	exon13	c.G2436T	p.Q812H	.	.	.
ERC2	26059	broad.mit.edu	36	3	56182522	56182522	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015576	exon4	c.G1141A	p.E381K	.	.	.
CCDC66	285331	broad.mit.edu	36	3	56626490	56626490	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001141947	exon14	c.G2154T	p.K718N	.	.	.
C3orf63	23272	broad.mit.edu	36	3	56656190	56656190	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001112736	exon14	c.C1615T	p.R539X	.	.	.
IL17RD	54756	broad.mit.edu	36	3	57107079	57107079	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017563	exon12	c.C1692T	p.F564F	.	.	.
IL17RD	54756	broad.mit.edu	36	3	57112188	57112188	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017563	exon9	c.G839T	p.R280I	.	.	.
HESX1	8820	broad.mit.edu	36	3	57207352	57207352	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003865	exon4	c.A471C	p.Q157H	.	.	.
HESX1	8820	broad.mit.edu	36	3	57207924	57207924	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003865	exon2	c.C254T	p.S85L	.	.	.
APPL1	26060	broad.mit.edu	36	3	57277550	57277550	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012096	exon21	c.G1978T	p.E660X	.	.	.
APPL1	26060	broad.mit.edu	36	3	57278627	57278627	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012096	exon22	c.C2002T	p.R668W	.	.	.
DNAH12	201625	broad.mit.edu	36	3	57469293	57469293	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178504	exon7	c.C557A	p.S186Y	.	.	.
ARF4	378	broad.mit.edu	36	3	57536326	57536326	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001660	exon5	c.C445T	p.R149C	.	.	.
FAM116A	201627	broad.mit.edu	36	3	57602444	57602444	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152678	exon12	c.C1108T	p.R370X	.	.	.
SLMAP	7871	broad.mit.edu	36	3	57873170	57873170	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007159	exon17	c.C1620T	p.I540I	.	.	.
FLNB	2317	broad.mit.edu	36	3	58042411	58042411	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164317	exon4	c.G655T	p.E219X	.	.	.
FLNB	2317	broad.mit.edu	36	3	58069324	58069324	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164317	exon13	c.A2041C	p.K681Q	.	.	.
DNASE1L3	1776	broad.mit.edu	36	3	58161863	58161863	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004944	exon7	c.C447T	p.F149F	.	.	.
RPP14	11102	broad.mit.edu	36	3	58278219	58278219	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001098783	exon6	c.C331A	p.L111I	.	.	.
PXK	54899	broad.mit.edu	36	3	58343403	58343403	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017771	exon4	c.C324A	p.I108I	.	.	.
PXK	54899	broad.mit.edu	36	3	58356437	58356437	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017771	exon9	c.G733T	p.D245Y	.	.	.
PDHB	5162	broad.mit.edu	36	3	58388939	58388939	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000925	exon10	c.G942A	p.A314A	.	.	.
KCTD6	200845	broad.mit.edu	36	3	58462251	58462251	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153331	exon2	c.C566A	p.S189Y	.	.	.
C3orf67	200844	broad.mit.edu	36	3	58792484	58792484	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198463	exon13	c.G1390A	p.D464N	.	.	.
PTPRG	5793	broad.mit.edu	36	3	62229849	62229849	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002841	exon20	c.C2974T	p.R992C	.	.	.
PTPRG	5793	broad.mit.edu	36	3	62237750	62237750	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002841	exon25	c.C3623A	p.A1208D	.	.	.
FEZF2	55079	broad.mit.edu	36	3	62330921	62330921	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018008	exon5	c.C1257T	p.C419C	.	.	.
FEZF2	55079	broad.mit.edu	36	3	62332320	62332320	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018008	exon3	c.C915T	p.F305F	.	.	.
CADPS	8618	broad.mit.edu	36	3	62426163	62426163	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_183393	exon23	c.C3318T	p.F1106F	.	.	.
CADPS	8618	broad.mit.edu	36	3	62714185	62714185	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_183393	exon3	c.G859A	p.E287K	.	.	.
ATXN7	6314	broad.mit.edu	36	3	63956293	63956293	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001177387	exon11	c.G1755A	p.P585P	.	.	.
PSMD6	9861	broad.mit.edu	36	3	63983084	63983084	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014814	exon2	c.C301T	p.R101C	.	.	.
PRICKLE2	166336	broad.mit.edu	36	3	64060570	64060570	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198859	exon8	c.G1732T	p.D578Y	.	.	.
PRICKLE2	166336	broad.mit.edu	36	3	64113944	64113944	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198859	exon6	c.C741T	p.F247F	.	.	.
ADAMTS9	56999	broad.mit.edu	36	3	64501886	64501886	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182920	exon36	c.C5446T	p.R1816W	.	.	.
ADAMTS9	56999	broad.mit.edu	36	3	64562854	64562854	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182920	exon26	c.C3823T	p.R1275W	.	.	.
MAGI1	9223	broad.mit.edu	36	3	65321956	65321956	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015520	exon23	c.C3676T	p.R1226C	.	.	.
MAGI1	9223	broad.mit.edu	36	3	65998991	65998991	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015520	exon1	c.G33A	p.W11X	.	.	.
LRIG1	26018	broad.mit.edu	36	3	66595556	66595556	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015541	exon2	c.G286T	p.E96X	.	.	.
KBTBD8	84541	broad.mit.edu	36	3	67141219	67141219	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032505	exon4	c.G1526T	p.W509L	.	.	.
KBTBD8	84541	broad.mit.edu	36	3	67141338	67141338	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032505	exon4	c.G1645A	p.V549I	.	.	.
GRM7	2917	broad.mit.edu	36	3	6878441	6878441	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000844	exon1	c.C366T	p.F122F	.	.	.
C3orf64	285203	broad.mit.edu	36	3	69109554	69109554	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173654	exon15	c.G1237A	p.D413N	.	.	.
UBA3	9039	broad.mit.edu	36	3	69195911	69195911	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198195	exon6	c.G428A	p.R143Q	.	.	.
LMOD3	56203	broad.mit.edu	36	3	69254019	69254019	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198271	exon1	c.C209A	p.S70Y	.	.	.
FRMD4B	23150	broad.mit.edu	36	3	69308495	69308495	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015123	exon22	c.T2854C	p.S952P	.	.	.
MITF	4286	broad.mit.edu	36	3	70091115	70091115	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198158	exon8	c.G694T	p.D232Y	.	.	.
SHQ1	55164	broad.mit.edu	36	3	72882556	72882556	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018130	exon11	c.G1303A	p.A435T	.	.	.
EBLN2	55096	broad.mit.edu	36	3	73194248	73194248	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018029	exon1	c.C326A	p.S109Y	.	.	.
EBLN2	55096	broad.mit.edu	36	3	73194677	73194677	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018029	exon1	c.T755C	p.L252S	.	.	.
PDZRN3	23024	broad.mit.edu	36	3	73516143	73516143	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015009	exon10	c.C2264T	p.S755L	.	.	.
GRM7	2917	broad.mit.edu	36	3	7469314	7469314	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000844	exon6	c.G1195T	p.D399Y	.	.	.
GRM7	2917	broad.mit.edu	36	3	7469394	7469394	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000844	exon6	c.G1275T	p.M425I	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77706416	77706416	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002942	exon14	c.C2048T	p.S683L	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77734224	77734224	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002942	exon20	c.G3028T	p.E1010X	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78731961	78731961	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002941	exon30	c.G4933T	p.E1645X	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78746508	78746508	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002941	exon28	c.G4415A	p.R1472H	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78759228	78759228	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002941	exon26	c.G3808A	p.E1270K	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78783620	78783620	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002941	exon19	c.C2764T	p.R922C	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78791591	78791591	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002941	exon17	c.G2377T	p.A793S	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78799812	78799812	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002941	exon14	c.C1877A	p.P626H	.	.	.
GBE1	2632	broad.mit.edu	36	3	81802763	81802763	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000158	exon3	c.A345C	p.K115N	.	.	.
CADM2	253559	broad.mit.edu	36	3	86044376	86044376	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001167674	exon5	c.A666G	p.E222E	.	.	.
CADM2	253559	broad.mit.edu	36	3	86197550	86197550	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001167674	exon9	c.G1169A	p.R390Q	.	.	.
CHMP2B	25978	broad.mit.edu	36	3	87377646	87377646	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014043	exon3	c.G219A	p.T73T	.	.	.
CHMP2B	25978	broad.mit.edu	36	3	87385318	87385318	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014043	exon5	c.C499A	p.L167I	.	.	.
POU1F1	5449	broad.mit.edu	36	3	87391799	87391799	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001122757	exon6	c.C889T	p.R297W	.	.	.
POU1F1	5449	broad.mit.edu	36	3	87396200	87396200	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001122757	exon3	c.G445T	p.D149Y	.	.	.
OXTR	5021	broad.mit.edu	36	3	8784060	8784060	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000916	exon3	c.C814T	p.R272C	.	.	.
HTR1F	3355	broad.mit.edu	36	3	88122724	88122724	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000866	exon2	c.C135T	p.I45I	.	.	.
CGGBP1	8545	broad.mit.edu	36	3	88187683	88187683	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008390	exon4	c.C134A	p.S45Y	.	.	.
ZNF654	55279	broad.mit.edu	36	3	88272217	88272217	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018293	exon1	c.A1067C	p.N356T	.	.	.
EPHA3	2042	broad.mit.edu	36	3	89531333	89531333	+	Intron	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182644	exon7	c.T1607G	p.F536C	.	.	.
RAD18	56852	broad.mit.edu	36	3	8958425	8958425	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020165	exon5	c.G330T	p.K110N	.	.	.
SRGAP3	9901	broad.mit.edu	36	3	9009706	9009706	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014850	exon20	c.G2442T	p.K814N	.	.	.
SRGAP3	9901	broad.mit.edu	36	3	9030525	9030525	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014850	exon16	c.A1815G	p.K605K	.	.	.
THUMPD3	25917	broad.mit.edu	36	3	9387979	9387979	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015453	exon4	c.A566C	p.E189A	.	.	.
SETD5	55209	broad.mit.edu	36	3	9457366	9457366	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080517	exon8	c.T794G	p.I265S	.	.	.
SETD5	55209	broad.mit.edu	36	3	9470466	9470466	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080517	exon17	c.C2390A	p.S797X	.	.	.
SETD5	55209	broad.mit.edu	36	3	9490110	9490110	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080517	exon20	c.A3386C	p.K1129T	.	.	.
PROS1	5627	broad.mit.edu	36	3	95102338	95102338	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000313	exon7	c.G727T	p.D243Y	.	.	.
PROS1	5627	broad.mit.edu	36	3	95107327	95107327	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000313	exon6	c.G592T	p.D198Y	.	.	.
PROS1	5627	broad.mit.edu	36	3	95107668	95107668	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000313	exon5	c.A356G	p.D119G	.	.	.
DHFRL1	200895	broad.mit.edu	36	3	95262507	95262507	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195643	exon2	c.T539G	p.F180C	.	.	.
NSUN3	63899	broad.mit.edu	36	3	95285750	95285750	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022072	exon3	c.T232A	p.S78T	.	.	.
CPNE9	151835	broad.mit.edu	36	3	9729459	9729459	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153635	exon8	c.C492A	p.F164L	.	.	.
BRPF1	7862	broad.mit.edu	36	3	9759841	9759841	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004634	exon7	c.C2197T	p.R733W	.	.	.
OGG1	4968	broad.mit.edu	36	3	9768482	9768482	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016828	exon3	c.C414T	p.I138I	.	.	.
CAMK1	8536	broad.mit.edu	36	3	9776429	9776429	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003656	exon9	c.G751T	p.D251Y	.	.	.
CAMK1	8536	broad.mit.edu	36	3	9778436	9778436	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003656	exon6	c.G435T	p.E145D	.	.	.
TADA3	10474	broad.mit.edu	36	3	9803898	9803898	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133480	exon5	c.G691T	p.E231X	.	.	.
EPHA6	285220	broad.mit.edu	36	3	98921851	98921851	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080448	exon15	c.C2841T	p.F947F	.	.	.
OR5H14	403273	broad.mit.edu	36	3	99351728	99351728	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005514	exon1	c.A809G	p.Q270R	.	.	.
OR5H15	403274	broad.mit.edu	36	3	99370827	99370827	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005515	exon1	c.G594T	p.M198I	.	.	.
OR5H6	79295	broad.mit.edu	36	3	99466786	99466786	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005479	exon1	c.G968A	p.S323N	.	.	.
OR5H2	79310	broad.mit.edu	36	3	99484426	99484426	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005482	exon1	c.C5T	p.S2L	.	.	.
OR5H2	79310	broad.mit.edu	36	3	99484776	99484776	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005482	exon1	c.C355A	p.L119I	.	.	.
OR5K3	403277	broad.mit.edu	36	3	99592331	99592331	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005516	exon1	c.T132C	p.G44G	.	.	.
OR5K3	403277	broad.mit.edu	36	3	99592509	99592509	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005516	exon1	c.C310A	p.L104I	.	.	.
PRRT3	285368	broad.mit.edu	36	3	9965983	9965983	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207351	exon2	c.G817A	p.A273T	.	.	.
OR5K1	26339	broad.mit.edu	36	3	99671322	99671322	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004736	exon1	c.C212T	p.S71F	.	.	.
OR5K1	26339	broad.mit.edu	36	3	99671622	99671622	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004736	exon1	c.C512T	p.S171L	.	.	.
CLDND1	56650	broad.mit.edu	36	3	99722838	99722838	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019895	exon3	c.G121T	p.E41X	.	.	.
ST3GAL6	10402	broad.mit.edu	36	3	99989643	99989643	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006100	exon8	c.G505T	p.E169X	.	.	.
ST3GAL6	10402	broad.mit.edu	36	3	99989867	99989867	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006100	exon9	c.A626C	p.N209T	.	.	.
ST3GAL6	10402	broad.mit.edu	36	3	99995272	99995272	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006100	exon11	c.G973T	p.V325L	.	.	.
ANO4	121601	broad.mit.edu	36	12	100014539	100014539	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178826	exon18	c.C1728T	p.I576I	.	.	.
SLC5A8	160728	broad.mit.edu	36	12	100076193	100076193	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145913	exon14	c.G1675T	p.E559X	.	.	.
SLC5A8	160728	broad.mit.edu	36	12	100079904	100079904	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145913	exon13	c.A1609C	p.I537L	.	.	.
SLC5A8	160728	broad.mit.edu	36	12	100102110	100102110	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145913	exon8	c.G985A	p.D329N	.	.	.
SLC5A8	160728	broad.mit.edu	36	12	100122444	100122444	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145913	exon2	c.C382T	p.R128C	.	.	.
UTP20	27340	broad.mit.edu	36	12	100226148	100226148	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014503	exon18	c.C2050T	p.L684F	.	.	.
UTP20	27340	broad.mit.edu	36	12	100252354	100252354	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014503	exon29	c.G3582T	p.E1194D	.	.	.
UTP20	27340	broad.mit.edu	36	12	100260861	100260861	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014503	exon35	c.C4308T	p.F1436F	.	.	.
UTP20	27340	broad.mit.edu	36	12	100297342	100297342	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014503	exon57	c.T7459G	p.F2487V	.	.	.
ARL1	400	broad.mit.edu	36	12	100320827	100320827	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001177	exon3	c.G171A	p.T57T	.	.	.
ARL1	400	broad.mit.edu	36	12	100323839	100323839	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001177	exon2	c.G56A	p.R19K	.	.	.
CLEC1B	51266	broad.mit.edu	36	12	10037125	10037125	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099431	exon5	c.A475C	p.N159H	.	.	.
CLEC1B	51266	broad.mit.edu	36	12	10039082	10039082	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099431	exon4	c.C370T	p.R124C	.	.	.
MYBPC1	4604	broad.mit.edu	36	12	100585730	100585730	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002465	exon23	c.C2446T	p.R816C	.	.	.
CHPT1	56994	broad.mit.edu	36	12	100644302	100644302	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020244	exon8	c.G1165A	p.A389T	.	.	.
GNPTAB	79158	broad.mit.edu	36	12	100683205	100683205	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024312	exon13	c.C1621A	p.H541N	.	.	.
ERC1	23085	broad.mit.edu	36	12	1007820	1007820	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178039	exon2	c.G490T	p.E164X	.	.	.
CCDC53	51019	broad.mit.edu	36	12	100964006	100964006	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016053	exon3	c.C172T	p.R58C	.	.	.
C12orf48	55010	broad.mit.edu	36	12	101082361	101082361	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017915	exon5	c.A511C	p.R171R	.	.	.
CLEC1A	51267	broad.mit.edu	36	12	10119460	10119460	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016511	exon4	c.C453A	p.F151L	.	.	.
IGF1	3479	broad.mit.edu	36	12	101393579	101393579	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001111285	exon2	c.C192T	p.F64F	.	.	.
CLEC7A	64581	broad.mit.edu	36	12	10173944	10173944	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022570	exon1	c.A5C	p.E2A	.	.	.
STAB2	55576	broad.mit.edu	36	12	102573468	102573468	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017564	exon15	c.C1713T	p.L571L	.	.	.
STAB2	55576	broad.mit.edu	36	12	102587508	102587508	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017564	exon21	c.C2232A	p.F744L	.	.	.
STAB2	55576	broad.mit.edu	36	12	102624786	102624786	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017564	exon38	c.C4083A	p.I1361I	.	.	.
STAB2	55576	broad.mit.edu	36	12	102645183	102645183	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017564	exon47	c.C4860T	p.F1620F	.	.	.
Unknown	0	broad.mit.edu	36	12	102711124	102711124	+	IGR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031701	exon9	c.G967A	p.D323N	.	.	.
HSP90B1	7184	broad.mit.edu	36	12	102855684	102855684	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003299	exon6	c.A825G	p.I275M	.	.	.
HSP90B1	7184	broad.mit.edu	36	12	102857441	102857441	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003299	exon8	c.G1000A	p.E334K	.	.	.
HSP90B1	7184	broad.mit.edu	36	12	102860519	102860519	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003299	exon12	c.G1459T	p.E487X	.	.	.
GLT8D2	83468	broad.mit.edu	36	12	102932931	102932931	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031302	exon4	c.G102T	p.K34N	.	.	.
GLT8D2	83468	broad.mit.edu	36	12	102933002	102933002	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031302	exon4	c.C31T	p.L11L	.	.	.
HCFC2	29915	broad.mit.edu	36	12	102985990	102985990	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013320	exon3	c.G448A	p.E150K	.	.	.
HCFC2	29915	broad.mit.edu	36	12	103021140	103021140	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013320	exon15	c.C2338T	p.R780W	.	.	.
EID3	493861	broad.mit.edu	36	12	103222396	103222396	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008394	exon1	c.G554A	p.R185Q	.	.	.
CHST11	50515	broad.mit.edu	36	12	103519820	103519820	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001173982	exon2	c.G110A	p.R37Q	.	.	.
SLC41A2	84102	broad.mit.edu	36	12	103762466	103762466	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032148	exon9	c.C1450T	p.L484F	.	.	.
ALDH1L2	160428	broad.mit.edu	36	12	103948317	103948317	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001034173	exon21	c.G2431A	p.V811M	.	.	.
ALDH1L2	160428	broad.mit.edu	36	12	103952225	103952225	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001034173	exon19	c.G2227A	p.E743K	.	.	.
ALDH1L2	160428	broad.mit.edu	36	12	103956016	103956016	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001034173	exon18	c.C2140T	p.R714X	.	.	.
KIAA1033	23325	broad.mit.edu	36	12	104067558	104067558	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015275	exon25	c.C2550A	p.F850L	.	.	.
KIAA1033	23325	broad.mit.edu	36	12	104077941	104077941	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015275	exon29	c.G2945A	p.R982Q	.	.	.
APPL2	55198	broad.mit.edu	36	12	104106326	104106326	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018171	exon17	c.C1489T	p.R497W	.	.	.
APPL2	55198	broad.mit.edu	36	12	104117387	104117387	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018171	exon10	c.G757T	p.E253X	.	.	.
KLRC3	3823	broad.mit.edu	36	12	10462259	10462259	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007333	exon4	c.C437T	p.A146V	.	.	.
NUAK1	9891	broad.mit.edu	36	12	104988755	104988755	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014840	exon6	c.C759T	p.F253F	.	.	.
CKAP4	10970	broad.mit.edu	36	12	105157762	105157762	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006825	exon2	c.G979A	p.E327K	.	.	.
POLR3B	55703	broad.mit.edu	36	12	105296222	105296222	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018082	exon8	c.G544T	p.E182X	.	.	.
POLR3B	55703	broad.mit.edu	36	12	105348198	105348198	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018082	exon14	c.G1281T	p.K427N	.	.	.
POLR3B	55703	broad.mit.edu	36	12	105351648	105351648	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018082	exon16	c.G1649A	p.R550Q	.	.	.
RFX4	5992	broad.mit.edu	36	12	105627254	105627254	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032491	exon5	c.C568T	p.R190X	.	.	.
RFX4	5992	broad.mit.edu	36	12	105627334	105627334	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032491	exon5	c.C648T	p.F216F	.	.	.
RIC8B	55188	broad.mit.edu	36	12	105701911	105701911	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018157	exon2	c.G91A	p.A31T	.	.	.
RIC8B	55188	broad.mit.edu	36	12	105743706	105743706	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018157	exon4	c.G814T	p.D272Y	.	.	.
MTERFD3	80298	broad.mit.edu	36	12	105895525	105895525	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001033050	exon3	c.T1098C	p.I366I	.	.	.
CRY1	1407	broad.mit.edu	36	12	105917888	105917888	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004075	exon6	c.C787T	p.R263X	.	.	.
CRY1	1407	broad.mit.edu	36	12	105940092	105940092	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004075	exon2	c.T167G	p.L56R	.	.	.
ERC1	23085	broad.mit.edu	36	12	1062747	1062747	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178039	exon3	c.C826T	p.R276W	.	.	.
ERC1	23085	broad.mit.edu	36	12	1062941	1062941	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178039	exon3	c.G1020T	p.E340D	.	.	.
MAGOHB	55110	broad.mit.edu	36	12	10650223	10650223	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018048	exon5	c.G365A	p.R122Q	.	.	.
PWP1	11137	broad.mit.edu	36	12	106606611	106606611	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007062	exon3	c.A221G	p.E74G	.	.	.
PRDM4	11108	broad.mit.edu	36	12	106669966	106669966	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012406	exon5	c.G482C	p.G161A	.	.	.
SART3	9733	broad.mit.edu	36	12	107448129	107448129	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014706	exon15	c.A1835C	p.K612T	.	.	.
SELPLG	6404	broad.mit.edu	36	12	107542080	107542080	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003006	exon2	c.G133A	p.E45K	.	.	.
CORO1C	23603	broad.mit.edu	36	12	107566555	107566555	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014325	exon10	c.C1260T	p.C420C	.	.	.
CORO1C	23603	broad.mit.edu	36	12	107566657	107566657	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014325	exon10	c.C1158A	p.I386I	.	.	.
SSH1	54434	broad.mit.edu	36	12	107716974	107716974	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001161331	exon12	c.G1313A	p.R438H	.	.	.
DAO	1610	broad.mit.edu	36	12	107803047	107803047	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001917	exon2	c.G136A	p.D46N	.	.	.
DAO	1610	broad.mit.edu	36	12	107818399	107818399	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001917	exon11	c.G1003A	p.E335K	.	.	.
USP30	84749	broad.mit.edu	36	12	107978970	107978970	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032663	exon2	c.C184T	p.R62C	.	.	.
ACACB	32	broad.mit.edu	36	12	108163443	108163443	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001093	exon35	c.G4996T	p.E1666X	.	.	.
FOXN4	121643	broad.mit.edu	36	12	108203605	108203605	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_213596	exon9	c.C1284T	p.F428F	.	.	.
MYO1H	283446	broad.mit.edu	36	12	108318682	108318682	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001101421	exon3	c.T353G	p.I118S	.	.	.
MYO1H	283446	broad.mit.edu	36	12	108367717	108367717	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001101421	exon30	c.A2962C	p.S988R	.	.	.
UBE3B	89910	broad.mit.edu	36	12	108420043	108420043	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130466	exon10	c.C751T	p.R251W	.	.	.
UBE3B	89910	broad.mit.edu	36	12	108431867	108431867	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130466	exon16	c.C1706A	p.S569Y	.	.	.
UBE3B	89910	broad.mit.edu	36	12	108448597	108448597	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130466	exon24	c.G2620T	p.E874X	.	.	.
TAS2R7	50837	broad.mit.edu	36	12	10845987	10845987	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023919	exon1	c.G450T	p.E150D	.	.	.
MMAB	326625	broad.mit.edu	36	12	108479252	108479252	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052845	exon9	c.G717T	p.M239I	.	.	.
TAS2R9	50835	broad.mit.edu	36	12	10853745	10853745	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023917	exon1	c.G197T	p.G66V	.	.	.
TAS2R10	50839	broad.mit.edu	36	12	10870011	10870011	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023921	exon1	c.C125T	p.T42M	.	.	.
TRPV4	59341	broad.mit.edu	36	12	108714564	108714564	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021625	exon12	c.C1878A	p.I626I	.	.	.
GIT2	9815	broad.mit.edu	36	12	108855225	108855225	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135214	exon19	c.G2131A	p.D711N	.	.	.
GIT2	9815	broad.mit.edu	36	12	108861400	108861400	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135214	exon16	c.G1677A	p.E559E	.	.	.
ANKRD13A	88455	broad.mit.edu	36	12	108934310	108934310	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033121	exon2	c.C214T	p.R72C	.	.	.
ANKRD13A	88455	broad.mit.edu	36	12	108946291	108946291	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033121	exon7	c.C792T	p.Y264Y	.	.	.
ANKRD13A	88455	broad.mit.edu	36	12	108956053	108956053	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033121	exon13	c.G1417T	p.D473Y	.	.	.
C12orf76	400073	broad.mit.edu	36	12	108979451	108979452	+	Missense_Mutation	DNP	CC	TA	TA	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207435	exon4	c.224_225TA	.	.	.	.
ATP2A2	488	broad.mit.edu	36	12	109268207	109268207	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170665	exon19	c.C2760A	p.S920S	.	.	.
C12orf24	29902	broad.mit.edu	36	12	109408768	109408768	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013300	exon5	c.G483T	p.Q161H	.	.	.
VPS29	51699	broad.mit.edu	36	12	109418206	109418206	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016226	exon2	c.C189T	p.F63F	.	.	.
RAD9B	144715	broad.mit.edu	36	12	109434976	109434976	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152442	exon5	c.G398T	p.R133I	.	.	.
RAD9B	144715	broad.mit.edu	36	12	109440919	109440919	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152442	exon7	c.C651A	p.F217L	.	.	.
RAD9B	144715	broad.mit.edu	36	12	109453776	109453776	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152442	exon12	c.G1249T	p.E417X	.	.	.
PPTC7	160760	broad.mit.edu	36	12	109474101	109474101	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139283	exon2	c.C279A	p.F93L	.	.	.
TAS2R13	50838	broad.mit.edu	36	12	10952352	10952352	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023920	exon1	c.C813A	p.V271V	.	.	.
PPP1CC	5501	broad.mit.edu	36	12	109644797	109644797	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002710	exon5	c.C610A	p.L204I	.	.	.
CCDC63	160762	broad.mit.edu	36	12	109826815	109826815	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152591	exon11	c.G1383T	p.E461D	.	.	.
CUX2	23316	broad.mit.edu	36	12	110226397	110226397	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015267	exon10	c.C754T	p.R252X	.	.	.
CUX2	23316	broad.mit.edu	36	12	110264176	110264176	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015267	exon21	c.G3595A	p.E1199K	.	.	.
TAS2R20	259295	broad.mit.edu	36	12	11041488	11041488	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_176889	exon1	c.C254A	p.S85Y	.	.	.
ATXN2	6311	broad.mit.edu	36	12	110435678	110435678	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002973	exon11	c.G1904T	p.R635I	.	.	.
BRAP	8315	broad.mit.edu	36	12	110577779	110577779	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006768	exon10	c.C1285T	p.R429W	.	.	.
ACAD10	80724	broad.mit.edu	36	12	110652081	110652081	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025247	exon10	c.C1332T	p.I444I	.	.	.
TMEM116	89894	broad.mit.edu	36	12	110859430	110859430	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138341	exon6	c.C90A	p.S30R	.	.	.
TMEM116	89894	broad.mit.edu	36	12	110860370	110860370	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138341	exon5	c.C67A	p.Q23K	.	.	.
NAA25	80018	broad.mit.edu	36	12	110970542	110970542	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024953	exon16	c.C1817A	p.S606Y	.	.	.
TAS2R46	259292	broad.mit.edu	36	12	11105559	11105559	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_176887	exon1	c.C602A	p.S201Y	.	.	.
TRAFD1	10906	broad.mit.edu	36	12	111063342	111063342	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006700	exon5	c.G574T	p.D192Y	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111139079	111139079	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001109662	exon46	c.C6750T	p.I2250I	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111169237	111169237	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001109662	exon28	c.C3848A	p.S1283Y	.	.	.
RPL6	6128	broad.mit.edu	36	12	111328116	111328116	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001024662	exon6	c.C638T	p.T213I	.	.	.
PTPN11	5781	broad.mit.edu	36	12	111426933	111426933	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002834	exon15	c.G1764T	p.Q588H	.	.	.
RPH3A	22895	broad.mit.edu	36	12	111812228	111812228	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014954	exon17	c.C1568T	p.T523I	.	.	.
OAS3	4940	broad.mit.edu	36	12	111883376	111883376	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006187	exon8	c.A1775G	p.N592S	.	.	.
OAS2	4939	broad.mit.edu	36	12	111931342	111931342	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002535	exon10	c.C1963A	p.L655I	.	.	.
RASAL1	8437	broad.mit.edu	36	12	112041355	112041355	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004658	exon8	c.G603T	p.W201C	.	.	.
C12orf52	84934	broad.mit.edu	36	12	112113999	112113999	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032848	exon4	c.G804T	p.W268C	.	.	.
IQCD	115811	broad.mit.edu	36	12	112130146	112130146	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138451	exon2	c.C209T	p.S70L	.	.	.
TPCN1	53373	broad.mit.edu	36	12	112182668	112182668	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017901	exon3	c.A225C	p.A75A	.	.	.
TBX5	6910	broad.mit.edu	36	12	113326054	113326054	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000192	exon2	c.G33A	p.A11A	.	.	.
PRB4	5545	broad.mit.edu	36	12	11353575	11353575	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002723	exon2	c.A96C	p.I32I	.	.	.
TBX3	6926	broad.mit.edu	36	12	113605070	113605070	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005996	exon1	c.C319A	p.L107M	.	.	.
MED13L	23389	broad.mit.edu	36	12	114931118	114931118	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015335	exon10	c.G1483A	p.E495K	.	.	.
MED13L	23389	broad.mit.edu	36	12	114942027	114942027	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015335	exon6	c.G759A	p.S253S	.	.	.
FBXW8	26259	broad.mit.edu	36	12	115850287	115850287	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153348	exon2	c.A395G	p.D132G	.	.	.
TESC	54997	broad.mit.edu	36	12	115979001	115979001	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017899	exon3	c.G202A	p.D68N	.	.	.
FBXO21	23014	broad.mit.edu	36	12	116111483	116111483	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015002	exon2	c.C307T	p.R103W	.	.	.
NOS1	4842	broad.mit.edu	36	12	116142351	116142351	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000620	exon27	c.C4082T	p.A1361V	.	.	.
NOS1	4842	broad.mit.edu	36	12	116156945	116156945	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000620	exon21	c.C3043T	p.R1015W	.	.	.
NOS1	4842	broad.mit.edu	36	12	116182785	116182785	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000620	exon14	c.C2235A	p.F745L	.	.	.
NOS1	4842	broad.mit.edu	36	12	116187513	116187513	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000620	exon12	c.C2127T	p.F709F	.	.	.
NOS1	4842	broad.mit.edu	36	12	116207515	116207515	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000620	exon7	c.C1296T	p.F432F	.	.	.
NOS1	4842	broad.mit.edu	36	12	116210384	116210384	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000620	exon5	c.C1005A	p.I335I	.	.	.
KSR2	283455	broad.mit.edu	36	12	116398663	116398663	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173598	exon17	c.C2484A	p.V828V	.	.	.
KSR2	283455	broad.mit.edu	36	12	116447225	116447225	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173598	exon14	c.G1947A	p.G649G	.	.	.
KSR2	283455	broad.mit.edu	36	12	116589839	116589839	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173598	exon5	c.A907C	p.K303Q	.	.	.
RFC5	5985	broad.mit.edu	36	12	116941933	116941933	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181578	exon4	c.G181T	p.E61X	.	.	.
CCDC60	160777	broad.mit.edu	36	12	118394214	118394214	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178499	exon3	c.G203A	p.G68E	.	.	.
PRKAB1	5564	broad.mit.edu	36	12	118596633	118596633	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006253	exon4	c.G523A	p.D175N	.	.	.
CIT	11113	broad.mit.edu	36	12	118657455	118657455	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007174	exon24	c.G2923A	p.D975N	.	.	.
CCDC64	92558	broad.mit.edu	36	12	119003123	119003123	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207311	exon7	c.G1358A	p.R453Q	.	.	.
SIRT4	23409	broad.mit.edu	36	12	119226007	119226007	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012240	exon2	c.G260A	p.R87H	.	.	.
ETV6	2120	broad.mit.edu	36	12	11930131	11930131	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001987	exon7	c.G1157T	p.R386I	.	.	.
RNF10	9921	broad.mit.edu	36	12	119497870	119497870	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014868	exon15	c.G2196T	p.K732N	.	.	.
ACADS	35	broad.mit.edu	36	12	119649294	119649294	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000017	exon2	c.G129A	p.Q43Q	.	.	.
OASL	8638	broad.mit.edu	36	12	119942981	119942981	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003733	exon6	c.C1311T	p.F437F	.	.	.
OASL	8638	broad.mit.edu	36	12	119953698	119953698	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003733	exon3	c.G587T	p.R196I	.	.	.
P2RX4	5025	broad.mit.edu	36	12	120144116	120144116	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002560	exon3	c.C300T	p.F100F	.	.	.
P2RX4	5025	broad.mit.edu	36	12	120150741	120150741	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002560	exon6	c.G547T	p.E183X	.	.	.
RNF34	80196	broad.mit.edu	36	12	120340059	120340059	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025126	exon3	c.G595A	p.D199N	.	.	.
KDM2B	84678	broad.mit.edu	36	12	120365972	120365972	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032590	exon17	c.C2459T	p.S820L	.	.	.
IQSEC3	440073	broad.mit.edu	36	12	120598	120598	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001170738	exon5	c.C2039T	p.P680L	.	.	.
TMEM120B	144404	broad.mit.edu	36	12	120683948	120683948	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080825	exon6	c.G472A	p.E158K	.	.	.
HPD	3242	broad.mit.edu	36	12	120771344	120771344	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002150	exon9	c.G540T	p.M180I	.	.	.
WDR66	144406	broad.mit.edu	36	12	120882953	120882953	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001178003	exon14	c.G2213A	p.R738H	.	.	.
BCL7A	605	broad.mit.edu	36	12	120966265	120966265	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020993	exon4	c.C362T	p.S121L	.	.	.
BCL7A	605	broad.mit.edu	36	12	120977274	120977274	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020993	exon5	c.C620T	p.S207L	.	.	.
MLXIP	22877	broad.mit.edu	36	12	121184000	121184000	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014938	exon9	c.C1245T	p.F415F	.	.	.
IL31	386653	broad.mit.edu	36	12	121224362	121224362	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001014336	exon2	c.G147A	p.S49S	.	.	.
LRRC43	254050	broad.mit.edu	36	12	121235026	121235026	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098519	exon2	c.C158T	p.S53L	.	.	.
BCL2L14	79370	broad.mit.edu	36	12	12123519	12123519	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138723	exon2	c.A13G	p.S5G	.	.	.
LRRC43	254050	broad.mit.edu	36	12	121251121	121251121	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098519	exon9	c.G1581T	p.E527D	.	.	.
CLIP1	6249	broad.mit.edu	36	12	121360282	121360282	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198240	exon18	c.G3436A	p.E1146K	.	.	.
ZCCHC8	55596	broad.mit.edu	36	12	121532035	121532035	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017612	exon10	c.C1005A	p.L335L	.	.	.
ZCCHC8	55596	broad.mit.edu	36	12	121541020	121541020	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017612	exon4	c.G365T	p.R122I	.	.	.
RSRC2	65117	broad.mit.edu	36	12	121565702	121565702	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023012	exon6	c.C628T	p.P210S	.	.	.
KNTC1	9735	broad.mit.edu	36	12	121624824	121624824	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014708	exon27	c.G2326T	p.E776X	.	.	.
KNTC1	9735	broad.mit.edu	36	12	121664253	121664253	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014708	exon55	c.G5869A	p.E1957K	.	.	.
KNTC1	9735	broad.mit.edu	36	12	121673054	121673054	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014708	exon62	c.G6462A	p.A2154A	.	.	.
GPR109A	338442	broad.mit.edu	36	12	121752796	121752796	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_177551	exon1	c.G988A	p.E330K	.	.	.
LRP6	4040	broad.mit.edu	36	12	12208502	12208502	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002336	exon9	c.G2024A	p.R675Q	.	.	.
LRP6	4040	broad.mit.edu	36	12	12208589	12208589	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002336	exon9	c.C1937A	p.S646Y	.	.	.
MPHOSPH9	10198	broad.mit.edu	36	12	122211647	122211647	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022782	exon18	c.G2914T	p.E972X	.	.	.
SBNO1	55206	broad.mit.edu	36	12	122374227	122374227	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018183	exon15	c.C2075T	p.S692L	.	.	.
SBNO1	55206	broad.mit.edu	36	12	122381785	122381785	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018183	exon7	c.A997C	p.I333L	.	.	.
LRP6	4040	broad.mit.edu	36	12	12247508	12247508	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002336	exon3	c.T543G	p.I181M	.	.	.
TCTN2	79867	broad.mit.edu	36	12	122729772	122729772	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024809	exon5	c.C547T	p.R183C	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122822162	122822162	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon3	c.A177C	p.E59D	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122831799	122831799	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon6	c.G658A	p.G220S	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122847253	122847253	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon12	c.C1730A	p.S577Y	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122859317	122859317	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon18	c.C2654A	p.S885Y	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122863857	122863857	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon19	c.G2984A	p.R995Q	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122885925	122885925	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon27	c.G4445T	p.R1482I	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122891890	122891890	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon29	c.G4851T	p.M1617I	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122903837	122903837	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon35	c.C6069A	p.S2023S	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122915124	122915124	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon39	c.C6584T	p.A2195V	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122924110	122924110	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon45	c.G7484T	p.R2495I	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122928360	122928360	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon47	c.G7970A	p.R2657Q	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122930239	122930239	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon49	c.G8218A	p.E2740K	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122948370	122948370	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon54	c.G9027T	p.Q3009H	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122961162	122961162	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon58	c.A9770G	p.K3257R	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122967065	122967065	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207437	exon62	c.G10477T	p.D3493Y	.	.	.
CCDC92	80212	broad.mit.edu	36	12	122988253	122988253	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025140	exon5	c.G301A	p.E101K	.	.	.
ZNF664	144348	broad.mit.edu	36	12	123062696	123062696	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152437	exon6	c.C52A	p.L18I	.	.	.
MANSC1	54682	broad.mit.edu	36	12	12374368	12374368	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018050	exon4	c.C1156A	p.L386I	.	.	.
SCARB1	949	broad.mit.edu	36	12	123868194	123868194	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005505	exon2	c.G139A	p.D47N	.	.	.
DHX37	57647	broad.mit.edu	36	12	124036677	124036677	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032656	exon2	c.C194T	p.S65L	.	.	.
TMEM132B	114795	broad.mit.edu	36	12	124694777	124694777	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052907	exon6	c.G1625T	p.R542I	.	.	.
DUSP16	80824	broad.mit.edu	36	12	12521663	12521663	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030640	exon7	c.G1369A	p.E457K	.	.	.
GPR19	2842	broad.mit.edu	36	12	12705491	12705491	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006143	exon4	c.G1159T	p.D387Y	.	.	.
GLT1D1	144423	broad.mit.edu	36	12	127939179	127939179	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144669	exon3	c.T260C	p.V87A	.	.	.
GLT1D1	144423	broad.mit.edu	36	12	127997873	127997873	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144669	exon6	c.G457T	p.E153X	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128125139	128125139	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133448	exon9	c.C2534A	p.S845Y	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128750779	128750779	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133448	exon2	c.C497T	p.P166L	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128750985	128750985	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133448	exon2	c.C291T	p.Y97Y	.	.	.
FZD10	11211	broad.mit.edu	36	12	129213630	129213630	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007197	exon1	c.G190A	p.A64T	.	.	.
FZD10	11211	broad.mit.edu	36	12	129214194	129214194	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007197	exon1	c.G754A	p.D252N	.	.	.
FZD10	11211	broad.mit.edu	36	12	129214691	129214691	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007197	exon1	c.C1251T	p.F417F	.	.	.
PIWIL1	9271	broad.mit.edu	36	12	129399884	129399884	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004764	exon8	c.A882C	p.K294N	.	.	.
PIWIL1	9271	broad.mit.edu	36	12	129405427	129405427	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004764	exon11	c.G1213T	p.D405Y	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129458227	129458227	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015347	exon16	c.C2922T	p.V974V	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129472993	129472993	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015347	exon13	c.G2428A	p.A810T	.	.	.
RAN	5901	broad.mit.edu	36	12	129925176	129925176	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006325	exon5	c.A380C	p.K127T	.	.	.
GPRC5D	55507	broad.mit.edu	36	12	12994484	12994484	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018654	exon1	c.C102T	p.I34I	.	.	.
HEBP1	50865	broad.mit.edu	36	12	13031463	13031463	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015987	exon3	c.G288T	p.K96N	.	.	.
SFSWAP	6433	broad.mit.edu	36	12	130778836	130778836	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004592	exon7	c.C991T	p.R331C	.	.	.
SFSWAP	6433	broad.mit.edu	36	12	130815083	130815083	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004592	exon12	c.C1850A	p.S617Y	.	.	.
KIAA1467	57613	broad.mit.edu	36	12	13105936	13105936	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020853	exon4	c.G693T	p.K231N	.	.	.
KIAA1467	57613	broad.mit.edu	36	12	13111461	13111461	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020853	exon7	c.G1106T	p.R369I	.	.	.
KIAA1467	57613	broad.mit.edu	36	12	13112644	13112644	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020853	exon8	c.C1282T	p.R428C	.	.	.
KIAA1467	57613	broad.mit.edu	36	12	13124170	13124170	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020853	exon12	c.G1823T	p.R608I	.	.	.
P2RX2	22953	broad.mit.edu	36	12	131707165	131707165	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174873	exon7	c.G697A	p.D233N	.	.	.
POLE	5426	broad.mit.edu	36	12	131728410	131728410	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006231	exon39	c.C5274T	p.F1758F	.	.	.
POLE	5426	broad.mit.edu	36	12	131746139	131746139	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006231	exon26	c.C3090T	p.F1030F	.	.	.
POLE	5426	broad.mit.edu	36	12	131759920	131759920	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006231	exon14	c.C1376T	p.S459F	.	.	.
POLE	5426	broad.mit.edu	36	12	131766286	131766286	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006231	exon6	c.C448T	p.R150X	.	.	.
ANKLE2	23141	broad.mit.edu	36	12	131829871	131829871	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015114	exon6	c.C1295T	p.S432L	.	.	.
CHFR	55743	broad.mit.edu	36	12	131958976	131958976	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018223	exon4	c.A311G	p.Y104C	.	.	.
Unknown	0	broad.mit.edu	36	12	132012919	132012919	+	IGR	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_183238	exon5	c.A1039G	p.S347G	.	.	.
Unknown	0	broad.mit.edu	36	12	132013741	132013741	+	IGR	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_183238	exon5	c.G217T	p.D73Y	.	.	.
ZNF84	7637	broad.mit.edu	36	12	132144810	132144810	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001127372	exon5	c.G1436A	p.R479K	.	.	.
ZNF84	7637	broad.mit.edu	36	12	132145257	132145257	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127372	exon5	c.A1883T	p.E628V	.	.	.
ZNF140	7699	broad.mit.edu	36	12	132192195	132192195	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003440	exon5	c.G259T	p.D87Y	.	.	.
GRIN2B	2904	broad.mit.edu	36	12	13606995	13606995	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000834	exon13	c.T4444A	p.S1482T	.	.	.
GRIN2B	2904	broad.mit.edu	36	12	13910274	13910274	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000834	exon2	c.G136A	p.D46N	.	.	.
ATF7IP	55729	broad.mit.edu	36	12	14480372	14480372	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018179	exon4	c.C1711T	p.R571X	.	.	.
IQSEC3	440073	broad.mit.edu	36	12	144878	144878	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001170738	exon10	c.G2727A	p.P909P	.	.	.
ATF7IP	55729	broad.mit.edu	36	12	14522535	14522535	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018179	exon12	c.C2959A	p.H987N	.	.	.
PLBD1	79887	broad.mit.edu	36	12	14597413	14597413	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024829	exon2	c.G316A	p.E106K	.	.	.
C12orf69	440087	broad.mit.edu	36	12	14850529	14850529	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013698	exon2	c.C353T	p.S118L	.	.	.
ART4	420	broad.mit.edu	36	12	14884888	14884888	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021071	exon2	c.T611G	p.F204C	.	.	.
EPS8	2059	broad.mit.edu	36	12	15713921	15713921	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004447	exon5	c.G310T	p.D104Y	.	.	.
DERA	51071	broad.mit.edu	36	12	16080541	16080542	+	Nonsense_Mutation	DNP	CG	TA	TA	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015954	exon8	c.859_860TA	.	.	.	.
LMO3	55885	broad.mit.edu	36	12	16595486	16595486	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001395	exon4	c.C375T	p.I125I	.	.	.
SLC6A12	6539	broad.mit.edu	36	12	174700	174700	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001122847	exon13	c.C1381T	p.L461L	.	.	.
ADIPOR2	79602	broad.mit.edu	36	12	1763468	1763468	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024551	exon7	c.G1000A	p.E334K	.	.	.
SLC6A12	6539	broad.mit.edu	36	12	178257	178257	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001122847	exon8	c.G813T	p.L271F	.	.	.
PIK3C2G	5288	broad.mit.edu	36	12	18326369	18326369	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004570	exon2	c.A87G	p.Q29Q	.	.	.
PIK3C2G	5288	broad.mit.edu	36	12	18335172	18335172	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004570	exon4	c.T878G	p.F293C	.	.	.
PLCZ1	89869	broad.mit.edu	36	12	18744036	18744036	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033123	exon10	c.C1133A	p.S378Y	.	.	.
CAPZA3	93661	broad.mit.edu	36	12	18782569	18782569	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033328	exon1	c.C100A	p.L34I	.	.	.
DCP1B	196513	broad.mit.edu	36	12	1932299	1932299	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152640	exon7	c.C1068T	p.F356F	.	.	.
SLCO1C1	53919	broad.mit.edu	36	12	20743796	20743796	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017435	exon2	c.G19T	p.E7X	.	.	.
SLCO1B3	28234	broad.mit.edu	36	12	20906753	20906753	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019844	exon6	c.T622C	p.Y208H	.	.	.
LST-3TM12	338821	broad.mit.edu	36	12	21063504	21063504	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001009562	exon2	c.G141A	p.P47P	.	.	.
SLCO1B1	10599	broad.mit.edu	36	12	21218784	21218784	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006446	exon4	c.T233C	p.L78S	.	.	.
SLCO1B1	10599	broad.mit.edu	36	12	21220993	21220993	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006446	exon5	c.G376T	p.E126X	.	.	.
SLCO1B1	10599	broad.mit.edu	36	12	21222893	21222893	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006446	exon6	c.G598A	p.A200T	.	.	.
SLCO1B1	10599	broad.mit.edu	36	12	21261427	21261427	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006446	exon12	c.C1605A	p.Y535X	.	.	.
RECQL	5965	broad.mit.edu	36	12	21522129	21522129	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032941	exon8	c.G742A	p.A248T	.	.	.
GYS2	2998	broad.mit.edu	36	12	21603890	21603890	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021957	exon9	c.G1191T	p.K397N	.	.	.
GYS2	2998	broad.mit.edu	36	12	21613136	21613136	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021957	exon5	c.C753T	p.C251C	.	.	.
GYS2	2998	broad.mit.edu	36	12	21620234	21620234	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021957	exon3	c.G328T	p.E110X	.	.	.
LDHB	3945	broad.mit.edu	36	12	21682568	21682568	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002300	exon6	c.G699T	p.K233N	.	.	.
LDHB	3945	broad.mit.edu	36	12	21686245	21686245	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002300	exon5	c.C503A	p.S168Y	.	.	.
KCNJ8	3764	broad.mit.edu	36	12	21810004	21810004	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004982	exon3	c.C1195T	p.R399X	.	.	.
KCNJ8	3764	broad.mit.edu	36	12	21810224	21810224	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004982	exon3	c.G975A	p.V325V	.	.	.
KCNJ8	3764	broad.mit.edu	36	12	21810728	21810728	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004982	exon3	c.G471A	p.T157T	.	.	.
KCNJ8	3764	broad.mit.edu	36	12	21817766	21817766	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004982	exon2	c.G52A	p.A18T	.	.	.
ABCC9	10060	broad.mit.edu	36	12	21845259	21845259	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020297	exon38	c.C4636T	p.R1546C	.	.	.
ABCC9	10060	broad.mit.edu	36	12	21851655	21851655	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020297	exon36	c.G4341T	p.E1447D	.	.	.
ABCC9	10060	broad.mit.edu	36	12	21854119	21854119	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020297	exon35	c.A4249C	p.R1417R	.	.	.
ABCC9	10060	broad.mit.edu	36	12	21919873	21919873	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020297	exon15	c.G2074T	p.D692Y	.	.	.
ABCC9	10060	broad.mit.edu	36	12	21970174	21970174	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020297	exon3	c.C375T	p.I125I	.	.	.
CMAS	55907	broad.mit.edu	36	12	22099418	22099418	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018686	exon2	c.G329A	p.R110Q	.	.	.
CMAS	55907	broad.mit.edu	36	12	22105513	22105513	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018686	exon6	c.G820A	p.E274K	.	.	.
CMAS	55907	broad.mit.edu	36	12	22109349	22109349	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018686	exon8	c.T1142C	p.L381S	.	.	.
KIAA0528	9847	broad.mit.edu	36	12	22534403	22534403	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014802	exon12	c.T1279G	p.L427V	.	.	.
KIAA0528	9847	broad.mit.edu	36	12	22568732	22568732	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014802	exon6	c.G542A	p.R181Q	.	.	.
SOX5	6660	broad.mit.edu	36	12	23607469	23607469	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152989	exon14	c.G1439T	p.R480L	.	.	.
LRMP	4033	broad.mit.edu	36	12	25152213	25152213	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006152	exon21	c.C1452A	p.I484I	.	.	.
CASC1	55259	broad.mit.edu	36	12	25188662	25188662	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001082972	exon9	c.C1080T	p.V360V	.	.	.
CASC1	55259	broad.mit.edu	36	12	25199592	25199592	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001082972	exon5	c.G394A	p.E132K	.	.	.
CASC1	55259	broad.mit.edu	36	12	25202710	25202710	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001082972	exon4	c.G335A	p.R112Q	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2562290	2562290	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001129842	exon15	c.G2145A	p.G715G	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2581315	2581315	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001129842	exon22	c.C2888A	p.S963Y	.	.	.
SSPN	8082	broad.mit.edu	36	12	26275021	26275021	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135823	exon3	c.C168T	p.L56L	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26539430	26539430	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002223	exon38	c.C5104T	p.R1702X	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26639727	26639727	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002223	exon32	c.G4318T	p.E1440X	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26641136	26641136	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002223	exon31	c.C4201A	p.L1401I	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26666577	26666577	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002223	exon25	c.G3151A	p.D1051N	ITPR2,kidney,NS,Substitution - Missense,+1	.	.
ITPR2	3709	broad.mit.edu	36	12	26703323	26703323	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002223	exon16	c.C1876T	p.R626W	.	.	.
C12orf11	55726	broad.mit.edu	36	12	26966878	26966878	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018164	exon8	c.C827A	p.S276Y	.	.	.
FGFR1OP2	26127	broad.mit.edu	36	12	27004767	27004767	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171888	exon5	c.G449A	p.R150Q	.	.	.
STK38L	23012	broad.mit.edu	36	12	27359288	27359288	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015000	exon8	c.A746C	p.N249T	.	.	.
ARNTL2	56938	broad.mit.edu	36	12	27434393	27434393	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020183	exon9	c.C873A	p.I291I	.	.	.
PPFIBP1	8496	broad.mit.edu	36	12	27721272	27721272	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003622	exon19	c.C1591T	p.R531X	.	.	.
PPFIBP1	8496	broad.mit.edu	36	12	27733218	27733218	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001198915	exon24	c.C2059A	p.L687I	.	.	.
ITFG2	55846	broad.mit.edu	36	12	2799631	2799631	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018463	exon5	c.G525T	p.K175N	.	.	.
CCDC91	55297	broad.mit.edu	36	12	28351892	28351892	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018318	exon5	c.T519C	p.F173F	.	.	.
FOXM1	2305	broad.mit.edu	36	12	2838864	2838864	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_202003	exon8	c.C1448A	p.S483X	.	.	.
FOXM1	2305	broad.mit.edu	36	12	2851615	2851615	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_202003	exon3	c.C562T	p.R188X	.	.	.
KDM5A	5927	broad.mit.edu	36	12	287096	287096	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042603	exon23	c.C3715T	p.R1239W	.	.	.
FAR2	55711	broad.mit.edu	36	12	29361185	29361185	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018099	exon9	c.A1100G	p.Y367C	.	.	.
OVCH1	341350	broad.mit.edu	36	12	29539515	29539515	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_183378	exon4	c.C424A	p.L142M	.	.	.
TMTC1	83857	broad.mit.edu	36	12	29580486	29580486	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193451	exon11	c.T1708G	p.L570V	.	.	.
TMTC1	83857	broad.mit.edu	36	12	29795996	29795996	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193451	exon5	c.C808A	p.H270N	.	.	.
TMTC1	83857	broad.mit.edu	36	12	29802912	29802912	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193451	exon3	c.G546A	p.S182S	.	.	.
KDM5A	5927	broad.mit.edu	36	12	300490	300490	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042603	exon18	c.G2473T	p.E825X	.	.	.
IPO8	10526	broad.mit.edu	36	12	30718891	30718891	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006390	exon7	c.G793A	p.A265T	.	.	.
CAPRIN2	65981	broad.mit.edu	36	12	30773323	30773323	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002259	exon8	c.A1308C	p.A436A	.	.	.
CAPRIN2	65981	broad.mit.edu	36	12	30779230	30779230	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002259	exon4	c.G748T	p.E250X	.	.	.
CAPRIN2	65981	broad.mit.edu	36	12	30797928	30797928	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002259	exon1	c.G37A	p.E13K	.	.	.
DDX11	1663	broad.mit.edu	36	12	31139002	31139002	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004399	exon14	c.C1461T	p.I487I	.	.	.
KDM5A	5927	broad.mit.edu	36	12	313702	313702	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042603	exon11	c.G1456A	p.D486N	.	.	.
DENND5B	160518	broad.mit.edu	36	12	31468793	31468793	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144973	exon10	c.C2334T	p.I778I	.	.	.
AMN1	196394	broad.mit.edu	36	12	31746123	31746123	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001113402	exon3	c.A257C	p.K86T	.	.	.
H3F3C	440093	broad.mit.edu	36	12	31836250	31836250	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013699	exon1	c.C118T	p.R40C	.	.	.
C12orf35	55196	broad.mit.edu	36	12	32026165	32026165	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018169	exon4	c.T1009G	p.F337V	.	.	.
C12orf35	55196	broad.mit.edu	36	12	32028143	32028143	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018169	exon4	c.G2987A	p.S996N	.	.	.
BICD1	636	broad.mit.edu	36	12	32260561	32260561	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001003398	exon2	c.C327A	p.I109I	.	.	.
TSPAN9	10867	broad.mit.edu	36	12	3261190	3261190	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001168320	exon7	c.C594T	p.F198F	.	.	.
FGD4	121512	broad.mit.edu	36	12	32626199	32626199	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139241	exon4	c.C131A	p.A44D	.	.	.
YARS2	51067	broad.mit.edu	36	12	32799928	32799928	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040436	exon1	c.G148T	p.D50Y	.	.	.
PKP2	5318	broad.mit.edu	36	12	32868328	32868328	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004572	exon8	c.C1724T	p.A575V	.	.	.
KDM5A	5927	broad.mit.edu	36	12	335924	335924	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042603	exon6	c.A713C	p.K238T	.	.	.
PRMT8	56341	broad.mit.edu	36	12	3533080	3533080	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019854	exon4	c.C420T	p.I140I	.	.	.
ALG10B	144245	broad.mit.edu	36	12	37000317	37000317	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013620	exon3	c.G457A	p.E153K	.	.	.
ALG10B	144245	broad.mit.edu	36	12	37000692	37000692	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013620	exon3	c.G832A	p.D278N	.	.	.
ALG10B	144245	broad.mit.edu	36	12	37000776	37000776	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013620	exon3	c.C916A	p.L306I	.	.	.
KIF21A	55605	broad.mit.edu	36	12	38002947	38002947	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001173465	exon25	c.G3353A	p.R1118Q	.	.	.
KIF21A	55605	broad.mit.edu	36	12	38012453	38012453	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001173465	exon19	c.C2773T	p.R925X	.	.	.
KIF21A	55605	broad.mit.edu	36	12	38031870	38031870	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001173465	exon11	c.G1649T	p.R550I	.	.	.
KIF21A	55605	broad.mit.edu	36	12	38037499	38037499	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001173465	exon9	c.G1223T	p.R408I	.	.	.
PARP11	57097	broad.mit.edu	36	12	3809360	3809360	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020367	exon2	c.G104A	p.G35D	.	.	.
C12orf40	283461	broad.mit.edu	36	12	38362831	38362831	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031748	exon8	c.T838G	p.F280V	.	.	.
C12orf40	283461	broad.mit.edu	36	12	38372148	38372148	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031748	exon11	c.T1378G	p.L460V	.	.	.
SLC2A13	114134	broad.mit.edu	36	12	38708465	38708465	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052885	exon3	c.G830T	p.R277I	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38931353	38931353	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198578	exon9	c.G1011T	p.E337D	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38933054	38933054	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198578	exon11	c.G1257A	p.A419A	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38973667	38973667	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198578	exon21	c.G2743T	p.E915X	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38986025	38986025	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198578	exon28	c.G3949T	p.D1317Y	.	.	.
LRRK2	120892	broad.mit.edu	36	12	39003257	39003257	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198578	exon38	c.A5538C	p.P1846P	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39609928	39609928	+	Missense_Mutation	SNP	G	A	A	rs4408370	by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175038	exon6	c.G527A	p.R176Q	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39613534	39613534	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175038	exon7	c.A675G	p.T225T	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39661093	39661093	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175038	exon15	c.G1887A	p.Q629Q	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40252972	40252972	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164595	exon10	c.G2124A	p.R708R	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40253568	40253568	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164595	exon10	c.G2720A	p.R907Q	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40253742	40253742	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164595	exon10	c.G2894A	p.R965Q	.	.	.
PRICKLE1	144165	broad.mit.edu	36	12	41146295	41146295	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144882	exon6	c.C743T	p.A248V	.	.	.
PRICKLE1	144165	broad.mit.edu	36	12	41148784	41148784	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144882	exon5	c.G499A	p.D167N	.	.	.
CCDC77	84318	broad.mit.edu	36	12	417805	417805	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130148	exon8	c.T769G	p.F257V	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42063721	42063721	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025003	exon31	c.A4704G	p.E1568E	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42109787	42109787	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025003	exon24	c.T3389C	p.V1130A	.	.	.
CCDC77	84318	broad.mit.edu	36	12	421334	421334	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130148	exon11	c.T1358G	p.L453R	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42134008	42134008	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025003	exon12	c.G1729A	p.E577K	.	.	.
PUS7L	83448	broad.mit.edu	36	12	42426178	42426179	+	Missense_Mutation	DNP	TT	GC	GC	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098615	exon4	c.1200_1201GC	.	.	.	.
PUS7L	83448	broad.mit.edu	36	12	42434703	42434703	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001098615	exon2	c.G613T	p.E205X	.	.	.
IRAK4	51135	broad.mit.edu	36	12	42462379	42462379	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016123	exon9	c.C944A	p.A315E	.	.	.
TWF1	5756	broad.mit.edu	36	12	42475724	42475724	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002822	exon9	c.T1086C	p.G362G	.	.	.
TWF1	5756	broad.mit.edu	36	12	42477061	42477061	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002822	exon8	c.G969T	p.M323I	.	.	.
TWF1	5756	broad.mit.edu	36	12	42479546	42479546	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002822	exon5	c.A507C	p.K169N	.	.	.
NELL2	4753	broad.mit.edu	36	12	43200217	43200217	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145108	exon19	c.C2238T	p.L746L	.	.	.
NELL2	4753	broad.mit.edu	36	12	43202169	43202169	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145108	exon18	c.C2056A	p.L686I	.	.	.
NELL2	4753	broad.mit.edu	36	12	43203383	43203383	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145108	exon17	c.T1956G	p.I652M	.	.	.
NELL2	4753	broad.mit.edu	36	12	43383820	43383820	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145108	exon12	c.G1274A	p.R425Q	.	.	.
NELL2	4753	broad.mit.edu	36	12	43457315	43457315	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145108	exon6	c.C656T	p.A219V	.	.	.
ANO6	196527	broad.mit.edu	36	12	44028338	44028338	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001025356	exon5	c.C606A	p.F202L	.	.	.
ANO6	196527	broad.mit.edu	36	12	44109277	44109277	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001025356	exon20	c.C2649A	p.L883L	.	.	.
ARID2	196528	broad.mit.edu	36	12	44501507	44501507	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152641	exon6	c.G675A	p.W225X	.	.	.
ARID2	196528	broad.mit.edu	36	12	44517553	44517553	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152641	exon10	c.G1126T	p.E376X	.	.	.
ARID2	196528	broad.mit.edu	36	12	44529728	44529728	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152641	exon14	c.C1814A	p.P605Q	.	.	.
ARID2	196528	broad.mit.edu	36	12	44531196	44531196	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152641	exon15	c.C3023A	p.S1008Y	.	.	.
ARID2	196528	broad.mit.edu	36	12	44532318	44532318	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152641	exon15	c.C4145G	p.S1382C	.	.	.
SRSF2IP	9169	broad.mit.edu	36	12	44605084	44605084	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004719	exon12	c.T3600C	p.G1200G	.	.	.
SLC38A1	81539	broad.mit.edu	36	12	44869042	44869042	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077484	exon17	c.C1442T	p.S481L	.	.	.
SLC38A1	81539	broad.mit.edu	36	12	44889110	44889110	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077484	exon6	c.G382T	p.E128X	.	.	.
SLC38A1	81539	broad.mit.edu	36	12	44919754	44919754	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077484	exon3	c.G97A	p.E33K	.	.	.
RAD51AP1	10635	broad.mit.edu	36	12	4525839	4525839	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006479	exon4	c.G313A	p.D105N	.	.	.
SLC38A4	55089	broad.mit.edu	36	12	45455105	45455105	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018018	exon14	c.C1293A	p.L431L	.	.	.
AMIGO2	347902	broad.mit.edu	36	12	45758147	45758147	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181847	exon2	c.C906T	p.V302V	.	.	.
FAM113B	91523	broad.mit.edu	36	12	45915164	45915164	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138371	exon2	c.C51T	p.F17F	.	.	.
DYRK4	8798	broad.mit.edu	36	12	4593163	4593163	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003845	exon13	c.T1546G	p.L516V	.	.	.
AKAP3	10566	broad.mit.edu	36	12	4606582	4606582	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006422	exon4	c.G1747T	p.E583X	.	.	.
AKAP3	10566	broad.mit.edu	36	12	4607823	4607823	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006422	exon4	c.A506C	p.K169T	.	.	.
AKAP3	10566	broad.mit.edu	36	12	4607962	4607962	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006422	exon4	c.G367T	p.E123X	.	.	.
AKAP3	10566	broad.mit.edu	36	12	4617562	4617562	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006422	exon3	c.C62T	p.S21F	.	.	.
RPAP3	79657	broad.mit.edu	36	12	46349120	46349120	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146076	exon13	c.A1082C	p.Q361P	.	.	.
RPAP3	79657	broad.mit.edu	36	12	46382866	46382866	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146075	exon2	c.G25A	p.E9K	.	.	.
RAPGEF3	10411	broad.mit.edu	36	12	46420430	46420430	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098532	exon21	c.G2121T	p.K707N	.	.	.
COL2A1	1280	broad.mit.edu	36	12	46657375	46657375	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033150	exon45	c.G3061T	p.E1021X	.	.	.
COL2A1	1280	broad.mit.edu	36	12	46679982	46679982	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001844	exon2	c.C279T	p.L93L	.	.	.
SENP1	29843	broad.mit.edu	36	12	46754424	46754424	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014554	exon8	c.C890A	p.S297Y	.	.	.
PFKM	5213	broad.mit.edu	36	12	46787433	46787433	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001166686	exon2	c.G10T	p.D4Y	.	.	.
PFKM	5213	broad.mit.edu	36	12	46815052	46815052	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166686	exon11	c.G1020T	p.K340N	.	.	.
PFKM	5213	broad.mit.edu	36	12	46821802	46821802	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166686	exon18	c.G1638T	p.K546N	.	.	.
OR10AD1	121275	broad.mit.edu	36	12	46882569	46882569	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004134	exon1	c.C774A	p.F258L	.	.	.
GALNT8	26290	broad.mit.edu	36	12	4700130	4700130	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017417	exon1	c.A26G	p.K9R	.	.	.
H1FNT	341567	broad.mit.edu	36	12	47009606	47009606	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181788	exon1	c.G265A	p.E89K	.	.	.
CCDC65	85478	broad.mit.edu	36	12	47584512	47584512	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033124	exon1	c.C126A	p.F42L	.	.	.
CCDC65	85478	broad.mit.edu	36	12	47597103	47597103	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033124	exon4	c.C554A	p.S185Y	.	.	.
FKBP11	51303	broad.mit.edu	36	12	47603895	47603895	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143782	exon5	c.C325T	p.R109X	.	.	.
WNT10B	7480	broad.mit.edu	36	12	47648361	47648361	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003394	exon4	c.G346T	p.E116X	.	.	.
DHH	50846	broad.mit.edu	36	12	47774305	47774305	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021044	exon1	c.C258A	p.I86I	.	.	.
TUBA1B	10376	broad.mit.edu	36	12	47809300	47809300	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006082	exon3	c.C367T	p.R123C	.	.	.
KCNA6	3742	broad.mit.edu	36	12	4789727	4789727	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002235	exon1	c.G259A	p.D87N	.	.	.
TUBA1C	84790	broad.mit.edu	36	12	47952579	47952579	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032704	exon4	c.G652A	p.D218N	.	.	.
KCNH3	23416	broad.mit.edu	36	12	48234527	48234527	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012284	exon11	c.G2059A	p.E687K	.	.	.
FAM186B	84070	broad.mit.edu	36	12	48279762	48279762	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032130	exon4	c.G1928A	p.R643Q	.	.	.
FAM186B	84070	broad.mit.edu	36	12	48281133	48281133	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032130	exon4	c.C557A	p.S186Y	.	.	.
PRPF40B	25766	broad.mit.edu	36	12	48317834	48317834	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031698	exon17	c.G1661A	p.R554Q	.	.	.
FMNL3	91010	broad.mit.edu	36	12	48348545	48348545	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175736	exon2	c.G186T	p.K62N	.	.	.
NCKAP5L	57701	broad.mit.edu	36	12	48476690	48476690	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037806	exon8	c.G1220T	p.S407I	.	.	.
BCDIN3D	144233	broad.mit.edu	36	12	48518993	48518993	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181708	exon2	c.G307T	p.E103X	.	.	.
SMARCD1	6602	broad.mit.edu	36	12	48766845	48766845	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139071	exon4	c.C448A	p.L150I	.	.	.
SMARCD1	6602	broad.mit.edu	36	12	48767429	48767429	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139071	exon5	c.G548A	p.R183Q	.	.	.
LIMA1	51474	broad.mit.edu	36	12	48857146	48857146	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001113546	exon11	c.C2251T	p.R751W	.	.	.
LIMA1	51474	broad.mit.edu	36	12	48902162	48902162	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001113546	exon4	c.A539G	p.N180S	.	.	.
LIMA1	51474	broad.mit.edu	36	12	48902470	48902470	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001113546	exon4	c.G231T	p.E77D	.	.	.
DIP2B	57609	broad.mit.edu	36	12	49351443	49351443	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173602	exon5	c.G635A	p.R212Q	.	.	.
DIP2B	57609	broad.mit.edu	36	12	49378438	49378438	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173602	exon18	c.C2109A	p.S703R	.	.	.
DIP2B	57609	broad.mit.edu	36	12	49412520	49412520	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173602	exon32	c.C3915T	p.I1305I	.	.	.
SLC11A2	4891	broad.mit.edu	36	12	49684851	49684851	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001174125	exon5	c.G503A	p.R168H	.	.	.
LETMD1	25875	broad.mit.edu	36	12	49729086	49729086	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015416	exon2	c.C125A	p.S42Y	.	.	.
TFCP2	7024	broad.mit.edu	36	12	49783764	49783764	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001173452	exon10	c.G1016A	p.R339Q	.	.	.
BIN2	51411	broad.mit.edu	36	12	49977213	49977213	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016293	exon8	c.G605A	p.R202H	.	.	.
GALNT6	11226	broad.mit.edu	36	12	50059778	50059778	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007210	exon3	c.G55A	p.A19T	.	.	.
SLC4A8	9498	broad.mit.edu	36	12	50137422	50137422	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039960	exon6	c.G595T	p.E199X	.	.	.
SLC4A8	9498	broad.mit.edu	36	12	50137505	50137505	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039960	exon6	c.G678T	p.K226N	.	.	.
SLC4A8	9498	broad.mit.edu	36	12	50142476	50142476	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039960	exon10	c.G1217T	p.R406I	.	.	.
KCNA5	3741	broad.mit.edu	36	12	5024291	5024291	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002234	exon1	c.C717A	p.I239I	.	.	.
KCNA5	3741	broad.mit.edu	36	12	5025068	5025068	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002234	exon1	c.G1494A	p.S498S	.	.	.
SCN8A	6334	broad.mit.edu	36	12	50442648	50442648	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014191	exon15	c.G2465A	p.G822E	.	.	.
SCN8A	6334	broad.mit.edu	36	12	50486808	50486808	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014191	exon27	c.C5271T	p.V1757V	.	.	.
KRT7	3855	broad.mit.edu	36	12	50923125	50923125	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005556	exon6	c.G921T	p.E307D	.	.	.
KRT84	3890	broad.mit.edu	36	12	51062495	51062495	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033045	exon4	c.A905G	p.Y302C	.	.	.
KRT84	3890	broad.mit.edu	36	12	51063819	51063819	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033045	exon2	c.C577A	p.L193I	.	.	.
KRT84	3890	broad.mit.edu	36	12	51065318	51065318	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033045	exon1	c.T319G	p.F107V	.	.	.
KRT75	9119	broad.mit.edu	36	12	51108729	51108729	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004693	exon6	c.C1101A	p.I367I	.	.	.
KRT6A	3853	broad.mit.edu	36	12	51167900	51167900	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005554	exon9	c.C1566T	p.G522G	.	.	.
KRT5	3852	broad.mit.edu	36	12	51199903	51199903	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000424	exon1	c.C445A	p.L149I	.	.	.
KRT5	3852	broad.mit.edu	36	12	51200210	51200210	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000424	exon1	c.C138T	p.F46F	.	.	.
KRT71	112802	broad.mit.edu	36	12	51227926	51227926	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033448	exon6	c.C1086T	p.I362I	.	.	.
KRT74	121391	broad.mit.edu	36	12	51253376	51253376	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175053	exon1	c.C453T	p.F151F	.	.	.
KRT73	319101	broad.mit.edu	36	12	51291315	51291315	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175068	exon6	c.C1050T	p.I350I	.	.	.
KRT1	3848	broad.mit.edu	36	12	51358238	51358238	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006121	exon3	c.G843T	p.E281D	.	.	.
KRT3	3850	broad.mit.edu	36	12	51475874	51475874	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_057088	exon1	c.G220T	p.G74C	.	.	.
KRT79	338785	broad.mit.edu	36	12	51514133	51514133	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175834	exon1	c.G179A	p.R60Q	.	.	.
KRT78	196374	broad.mit.edu	36	12	51524263	51524263	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173352	exon6	c.G928T	p.E310X	.	.	.
EIF4B	1975	broad.mit.edu	36	12	51699046	51699046	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001417	exon3	c.C349T	p.R117X	.	.	.
TENC1	23371	broad.mit.edu	36	12	51741233	51741233	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_170754	exon20	c.G3276A	p.E1092E	.	.	.
CSAD	51380	broad.mit.edu	36	12	51838659	51838659	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015989	exon17	c.G1466A	p.G489D	.	.	.
AAAS	8086	broad.mit.edu	36	12	51987748	51987748	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001173466	exon15	c.G1334A	p.R445Q	.	.	.
SP7	121340	broad.mit.edu	36	12	52008542	52008542	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152860	exon2	c.G951A	p.W317X	.	.	.
MAP3K12	7786	broad.mit.edu	36	12	52164385	52164385	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193511	exon7	c.C1171T	p.R391X	.	.	.
ATP5G2	517	broad.mit.edu	36	12	52349306	52349306	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005176	exon4	c.C375T	p.I125I	.	.	.
HOXC13	3229	broad.mit.edu	36	12	52625285	52625285	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017410	exon2	c.C971T	p.A324V	.	.	.
HOXC10	3226	broad.mit.edu	36	12	52665699	52665699	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017409	exon1	c.C389A	p.S130Y	.	.	.
HOXC4	3221	broad.mit.edu	36	12	52734073	52734073	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014620	exon3	c.C100A	p.P34T	.	.	.
SMUG1	23583	broad.mit.edu	36	12	52863882	52863882	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014311	exon3	c.G110A	p.R37Q	.	.	.
GPR84	53831	broad.mit.edu	36	12	53042968	53042968	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020370	exon2	c.C935T	p.S312L	.	.	.
GPR84	53831	broad.mit.edu	36	12	53043876	53043876	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020370	exon2	c.C27A	p.F9L	.	.	.
ZNF385A	25946	broad.mit.edu	36	12	53055899	53055899	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015481	exon2	c.C194A	p.S65Y	.	.	.
ITGA5	3678	broad.mit.edu	36	12	53081032	53081032	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002205	exon25	c.C2508T	p.G836G	.	.	.
ITGA5	3678	broad.mit.edu	36	12	53091940	53091940	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002205	exon2	c.C294A	p.L98L	.	.	.
NCKAP1L	3071	broad.mit.edu	36	12	53180617	53180617	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184976	exon3	c.G97A	p.E33K	.	.	.
NCKAP1L	3071	broad.mit.edu	36	12	53188524	53188524	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184976	exon5	c.G298T	p.D100Y	.	.	.
PDE1B	5153	broad.mit.edu	36	12	53253660	53253660	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000924	exon10	c.G964A	p.E322K	.	.	.
KIAA0748	9840	broad.mit.edu	36	12	53643897	53643897	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098815	exon8	c.G551A	p.R184Q	.	.	.
NEUROD4	58158	broad.mit.edu	36	12	53706718	53706718	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021191	exon2	c.G228T	p.K76N	.	.	.
NEUROD4	58158	broad.mit.edu	36	12	53706865	53706865	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021191	exon2	c.G375A	p.K125K	.	.	.
NEUROD4	58158	broad.mit.edu	36	12	53707302	53707302	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021191	exon2	c.C812A	p.P271H	.	.	.
OR6C6	283365	broad.mit.edu	36	12	53975103	53975103	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005493	exon1	c.C181A	p.L61I	.	.	.
OR6C6	283365	broad.mit.edu	36	12	53975243	53975243	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005493	exon1	c.G41A	p.G14E	.	.	.
OR6C3	254786	broad.mit.edu	36	12	54012321	54012321	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_054104	exon1	c.G570A	p.W190X	.	.	.
OR6C2	341416	broad.mit.edu	36	12	54132486	54132486	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_054105	exon1	c.C222A	p.V74V	.	.	.
OR6C70	390327	broad.mit.edu	36	12	54149275	54149275	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005499	exon1	c.G915T	p.K305N	.	.	.
OR6C4	341418	broad.mit.edu	36	12	54231484	54231484	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005494	exon1	c.T207G	p.I69M	.	.	.
OR6C4	341418	broad.mit.edu	36	12	54231775	54231775	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005494	exon1	c.C498T	p.F166F	.	.	.
METTL7B	196410	broad.mit.edu	36	12	54364096	54364096	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152637	exon2	c.A731C	p.K244T	.	.	.
ITGA7	3679	broad.mit.edu	36	12	54373348	54373348	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001144997	exon20	c.G2277A	p.S759S	.	.	.
DNAJC14	85406	broad.mit.edu	36	12	54507911	54507911	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032364	exon2	c.G799T	p.E267X	.	.	.
MMP19	4327	broad.mit.edu	36	12	54519733	54519733	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002429	exon5	c.G580A	p.E194K	.	.	.
WIBG	84305	broad.mit.edu	36	12	54582272	54582272	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001143853	exon3	c.G263A	p.R88H	.	.	.
ESYT1	23344	broad.mit.edu	36	12	54823348	54823348	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015292	exon29	c.C3189A	p.S1063S	.	.	.
SLC39A5	283375	broad.mit.edu	36	12	54916741	54916741	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135195	exon8	c.C1151T	p.T384M	.	.	.
SLC39A5	283375	broad.mit.edu	36	12	54917764	54917764	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135195	exon11	c.C1605T	p.P535P	.	.	.
COQ10A	93058	broad.mit.edu	36	12	54950253	54950253	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144576	exon5	c.T629C	p.F210S	.	.	.
STAT2	6773	broad.mit.edu	36	12	55026642	55026642	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198332	exon21	c.C1883T	p.T628M	.	.	.
SPRYD4	283377	broad.mit.edu	36	12	55148665	55148665	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207344	exon1	c.C23A	p.S8Y	.	.	.
BAZ2A	11176	broad.mit.edu	36	12	55291959	55291959	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013449	exon6	c.A1480C	p.K494Q	.	.	.
ANO2	57101	broad.mit.edu	36	12	5555277	5555277	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020373	exon24	c.G2605A	p.E869K	.	.	.
TAC3	6866	broad.mit.edu	36	12	55693414	55693414	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001178054	exon4	c.G234A	p.E78E	.	.	.
MYO1A	4640	broad.mit.edu	36	12	55711199	55711199	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005379	exon23	c.G2376T	p.K792N	.	.	.
MYO1A	4640	broad.mit.edu	36	12	55716424	55716424	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005379	exon22	c.G2283T	p.K761N	.	.	.
MYO1A	4640	broad.mit.edu	36	12	55727414	55727414	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005379	exon5	c.A370G	p.K124E	.	.	.
TMEM194A	23306	broad.mit.edu	36	12	55740049	55740049	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015257	exon8	c.G996T	p.E332D	.	.	.
TMEM194A	23306	broad.mit.edu	36	12	55752950	55752950	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015257	exon2	c.T140C	p.V47A	.	.	.
ANO2	57101	broad.mit.edu	36	12	5579018	5579018	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020373	exon21	c.C2126T	p.T709I	.	.	.
LRP1	4035	broad.mit.edu	36	12	55834607	55834607	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002332	exon8	c.C1083T	p.L361L	.	.	.
LRP1	4035	broad.mit.edu	36	12	55871009	55871009	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002332	exon43	c.G7186A	p.A2396T	.	.	.
LRP1	4035	broad.mit.edu	36	12	55872913	55872913	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002332	exon45	c.G7448A	p.R2483Q	.	.	.
SHMT2	6472	broad.mit.edu	36	12	55912318	55912318	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166359	exon5	c.C507T	p.F169F	.	.	.
ANO2	57101	broad.mit.edu	36	12	5592098	5592098	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020373	exon20	c.T2072C	p.F691S	.	.	.
INHBC	3626	broad.mit.edu	36	12	56129800	56129800	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005538	exon2	c.G787A	p.D263N	.	.	.
ARHGAP9	64333	broad.mit.edu	36	12	56159431	56159431	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032496	exon2	c.G26A	p.S9N	.	.	.
MARS	4141	broad.mit.edu	36	12	56170355	56170355	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004990	exon6	c.G589A	p.A197T	.	.	.
MARS	4141	broad.mit.edu	36	12	56196500	56196500	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004990	exon21	c.G2572T	p.E858X	.	.	.
KIF5A	3798	broad.mit.edu	36	12	56244198	56244198	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004984	exon4	c.G332A	p.R111Q	.	.	.
KIF5A	3798	broad.mit.edu	36	12	56244543	56244543	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004984	exon5	c.C430T	p.R144C	.	.	.
KIF5A	3798	broad.mit.edu	36	12	56255709	56255709	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004984	exon17	c.C1925T	p.S642L	.	.	.
KIF5A	3798	broad.mit.edu	36	12	56255801	56255801	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004984	exon17	c.G2017A	p.A673T	.	.	.
DTX3	196403	broad.mit.edu	36	12	56287070	56287070	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178502	exon5	c.G157A	p.E53K	.	.	.
SLC26A10	65012	broad.mit.edu	36	12	56300488	56300488	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133489	exon1	c.G218T	p.R73I	.	.	.
SLC26A10	65012	broad.mit.edu	36	12	56302618	56302618	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133489	exon5	c.G718A	p.A240T	.	.	.
OS9	10956	broad.mit.edu	36	12	56397952	56397952	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001017958	exon10	c.C1078T	p.R360X	.	.	.
AGAP2	116986	broad.mit.edu	36	12	56410575	56410575	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014770	exon12	c.G1390T	p.D464Y	.	.	.
AGAP2	116986	broad.mit.edu	36	12	56414124	56414124	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014770	exon5	c.C493T	p.R165C	.	.	.
MARCH9	92979	broad.mit.edu	36	12	56438185	56438185	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138396	exon3	c.G541A	p.E181K	.	.	.
MARCH9	92979	broad.mit.edu	36	12	56438892	56438892	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138396	exon4	c.C986T	p.A329V	.	.	.
TSFM	10102	broad.mit.edu	36	12	56463161	56463161	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172695	exon2	c.C59A	p.A20D	.	.	.
LRIG3	121227	broad.mit.edu	36	12	57554346	57554346	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153377	exon18	c.A2873G	p.D958G	.	.	.
LRIG3	121227	broad.mit.edu	36	12	57557681	57557681	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153377	exon15	c.G2304T	p.E768D	.	.	.
LRIG3	121227	broad.mit.edu	36	12	57565935	57565935	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153377	exon10	c.C1189T	p.R397W	.	.	.
ANO2	57101	broad.mit.edu	36	12	5900580	5900580	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020373	exon3	c.G409T	p.G137C	.	.	.
VWF	7450	broad.mit.edu	36	12	5955674	5955674	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000552	exon43	c.G7301A	p.R2434Q	.	.	.
VWF	7450	broad.mit.edu	36	12	5998795	5998795	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000552	exon28	c.G4050A	p.A1350A	.	.	.
VWF	7450	broad.mit.edu	36	12	6005396	6005396	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000552	exon23	c.G3045A	p.E1015E	.	.	.
VWF	7450	broad.mit.edu	36	12	6037283	6037283	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000552	exon14	c.G1722A	p.P574P	.	.	.
VWF	7450	broad.mit.edu	36	12	6054883	6054883	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000552	exon7	c.G753T	p.E251D	.	.	.
USP15	9958	broad.mit.edu	36	12	61035438	61035438	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006313	exon7	c.C743T	p.S248L	.	.	.
USP15	9958	broad.mit.edu	36	12	61076356	61076356	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006313	exon19	c.C2498T	p.S833L	.	.	.
MON2	23041	broad.mit.edu	36	12	61258530	61258530	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015026	exon31	c.G4553T	p.R1518I	.	.	.
MON2	23041	broad.mit.edu	36	12	61260398	61260398	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015026	exon32	c.G4630A	p.E1544K	.	.	.
PPM1H	57460	broad.mit.edu	36	12	61512292	61512292	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020700	exon2	c.G280T	p.D94Y	.	.	.
AVPR1A	552	broad.mit.edu	36	12	61827689	61827689	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000706	exon2	c.C974T	p.S325L	.	.	.
DPY19L2	283417	broad.mit.edu	36	12	62277926	62277926	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173812	exon14	c.T1391C	p.I464T	.	.	.
SRGAP1	57522	broad.mit.edu	36	12	62664016	62664016	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020762	exon2	c.A90G	p.E30E	.	.	.
SRGAP1	57522	broad.mit.edu	36	12	62745170	62745170	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020762	exon8	c.C1029T	p.C343C	.	.	.
SRGAP1	57522	broad.mit.edu	36	12	62775021	62775021	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020762	exon13	c.C1582T	p.R528W	.	.	.
C12orf56	115749	broad.mit.edu	36	12	63033064	63033064	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001170633	exon2	c.G292T	p.E98X	.	.	.
TBK1	29110	broad.mit.edu	36	12	63164397	63164397	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013254	exon9	c.C1040A	p.S347Y	.	.	.
SCNN1A	6337	broad.mit.edu	36	12	6327594	6327594	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001159576	exon12	c.C1893T	p.L631L	.	.	.
GNS	2799	broad.mit.edu	36	12	63396831	63396831	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002076	exon14	c.G1616A	p.R539H	.	.	.
GNS	2799	broad.mit.edu	36	12	63403072	63403072	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002076	exon11	c.C1289T	p.S430F	.	.	.
GNS	2799	broad.mit.edu	36	12	63420689	63420689	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002076	exon7	c.C839A	p.S280Y	.	.	.
LTBR	4055	broad.mit.edu	36	12	6364732	6364732	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002342	exon4	c.C398T	p.A133V	.	.	.
LEMD3	23592	broad.mit.edu	36	12	63850635	63850635	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014319	exon1	c.G992T	p.S331I	.	.	.
TAPBPL	55080	broad.mit.edu	36	12	6433135	6433135	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018009	exon3	c.G557A	p.R186Q	.	.	.
IRAK3	11213	broad.mit.edu	36	12	64883841	64883841	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007199	exon2	c.C217T	p.L73F	.	.	.
IRAK3	11213	broad.mit.edu	36	12	64908330	64908330	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142523	exon7	c.G617A	p.R206Q	.	.	.
HELB	92797	broad.mit.edu	36	12	64990160	64990160	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033647	exon4	c.G1185T	p.E395D	.	.	.
GRIP1	23426	broad.mit.edu	36	12	65221972	65221972	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001178074	exon3	c.C162T	p.V54V	.	.	.
NOP2	4839	broad.mit.edu	36	12	6543152	6543152	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006170	exon7	c.G565T	p.E189X	.	.	.
CHD4	1108	broad.mit.edu	36	12	6571458	6571458	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001273	exon20	c.G2975A	p.R992Q	.	.	.
CAND1	55832	broad.mit.edu	36	12	65977898	65977898	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018448	exon6	c.A852G	p.R284R	.	.	.
CAND1	55832	broad.mit.edu	36	12	65985297	65985297	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018448	exon10	c.G1582A	p.V528I	.	.	.
ACRBP	84519	broad.mit.edu	36	12	6623622	6623622	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032489	exon5	c.G886T	p.D296Y	.	.	.
ACRBP	84519	broad.mit.edu	36	12	6624703	6624703	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032489	exon4	c.C419A	p.A140D	.	.	.
ACRBP	84519	broad.mit.edu	36	12	6625922	6625922	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032489	exon3	c.C345A	p.V115V	.	.	.
NUP107	57122	broad.mit.edu	36	12	67390088	67390088	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020401	exon10	c.G838T	p.E280X	.	.	.
YEATS4	8089	broad.mit.edu	36	12	68045886	68045886	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006530	exon4	c.C288T	p.F96F	.	.	.
GPR162	27239	broad.mit.edu	36	12	6806264	6806264	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019858	exon5	c.C1401T	p.D467D	.	.	.
FRS2	10818	broad.mit.edu	36	12	68251428	68251428	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042555	exon8	c.G359T	p.R120I	.	.	.
FRS2	10818	broad.mit.edu	36	12	68254445	68254445	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042555	exon10	c.C970T	p.R324C	.	.	.
CCT2	10576	broad.mit.edu	36	12	68278026	68278026	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198842	exon13	c.A1102C	p.M368L	.	.	.
USP5	8078	broad.mit.edu	36	12	6840422	6840422	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003481	exon12	c.C1389A	p.F463L	.	.	.
RAB3IP	117177	broad.mit.edu	36	12	68495488	68495488	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001024647	exon9	c.C760A	p.L254I	.	.	.
KCNMB4	27345	broad.mit.edu	36	12	69110694	69110694	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014505	exon3	c.C627A	p.F209L	.	.	.
ATN1	1822	broad.mit.edu	36	12	6920894	6920894	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001007026	exon9	c.G3455A	p.R1152H	.	.	.
PTPRB	5787	broad.mit.edu	36	12	69216114	69216114	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001109754	exon29	c.T6039G	p.V2013V	.	.	.
PTPRB	5787	broad.mit.edu	36	12	69272372	69272372	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001109754	exon7	c.C1737A	p.V579V	.	.	.
PTPRR	5801	broad.mit.edu	36	12	69336761	69336761	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130846	exon9	c.C1135T	p.R379C	.	.	.
PTPRR	5801	broad.mit.edu	36	12	69342559	69342559	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130846	exon7	c.C856T	p.R286X	.	.	.
PTPRR	5801	broad.mit.edu	36	12	69364185	69364185	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130846	exon6	c.G751T	p.E251X	.	.	.
PTPRR	5801	broad.mit.edu	36	12	69378335	69378335	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130846	exon4	c.A521C	p.N174T	.	.	.
TSPAN8	7103	broad.mit.edu	36	12	69819837	69819837	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004616	exon4	c.C182T	p.A61V	.	.	.
ZFC3H1	196441	broad.mit.edu	36	12	70299985	70299985	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144982	exon26	c.C5037A	p.F1679L	.	.	.
ZFC3H1	196441	broad.mit.edu	36	12	70300142	70300142	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144982	exon26	c.C4880A	p.S1627Y	.	.	.
ZFC3H1	196441	broad.mit.edu	36	12	70313452	70313452	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144982	exon13	c.G2544T	p.K848N	.	.	.
ZFC3H1	196441	broad.mit.edu	36	12	70314794	70314794	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144982	exon11	c.G2317T	p.E773X	.	.	.
THAP2	83591	broad.mit.edu	36	12	70354383	70354383	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031435	exon2	c.C205T	p.R69X	.	.	.
THAP2	83591	broad.mit.edu	36	12	70357120	70357120	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031435	exon3	c.C652A	p.L218I	.	.	.
C1S	716	broad.mit.edu	36	12	7044132	7044132	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201442	exon8	c.G921A	p.A307A	.	.	.
C1S	716	broad.mit.edu	36	12	7044611	7044611	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201442	exon9	c.T995C	p.V332A	.	.	.
TBC1D15	64786	broad.mit.edu	36	12	70576803	70576803	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146214	exon10	c.G1088T	p.R363I	.	.	.
C1R	715	broad.mit.edu	36	12	7058534	7058534	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001733	exon8	c.G1369A	p.A457T	.	.	.
TBC1D15	64786	broad.mit.edu	36	12	70601448	70601448	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146214	exon17	c.G1774A	p.E592K	.	.	.
TPH2	121278	broad.mit.edu	36	12	70619109	70619109	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173353	exon1	c.G76A	p.E26K	.	.	.
TPH2	121278	broad.mit.edu	36	12	70711407	70711407	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173353	exon10	c.G1267T	p.E423X	.	.	.
TRHDE	29953	broad.mit.edu	36	12	70953540	70953540	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013381	exon1	c.G715A	p.A239T	.	.	.
TRHDE	29953	broad.mit.edu	36	12	70966901	70966901	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013381	exon2	c.C953T	p.T318M	.	.	.
TRHDE	29953	broad.mit.edu	36	12	71058046	71058046	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013381	exon3	c.G1058A	p.R353Q	.	.	.
CLSTN3	9746	broad.mit.edu	36	12	7177603	7177603	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014718	exon3	c.G355A	p.D119N	.	.	.
CLSTN3	9746	broad.mit.edu	36	12	7180149	7180149	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014718	exon6	c.G823T	p.E275X	.	.	.
ACSM4	341392	broad.mit.edu	36	12	7350457	7350457	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080454	exon2	c.A263C	p.K88T	.	.	.
ACSM4	341392	broad.mit.edu	36	12	7366284	7366284	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080454	exon7	c.T1005C	p.Y335Y	.	.	.
ACSM4	341392	broad.mit.edu	36	12	7370892	7370892	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080454	exon12	c.G1590A	p.E530E	.	.	.
KCNC2	3747	broad.mit.edu	36	12	73730926	73730926	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139137	exon3	c.C1126T	p.R376X	.	.	.
KCNC2	3747	broad.mit.edu	36	12	73731112	73731112	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139137	exon3	c.C940A	p.L314I	.	.	.
KCNC2	3747	broad.mit.edu	36	12	73887523	73887523	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139137	exon2	c.G508A	p.E170K	.	.	.
CD163L1	283316	broad.mit.edu	36	12	7401292	7401292	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174941	exon19	c.T4337G	p.L1446R	.	.	.
KRR1	11103	broad.mit.edu	36	12	74184091	74184091	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007043	exon7	c.G691T	p.D231Y	.	.	.
CD163L1	283316	broad.mit.edu	36	12	7419207	7419207	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174941	exon11	c.C2938T	p.Q980X	.	.	.
CD163L1	283316	broad.mit.edu	36	12	7450549	7450549	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174941	exon5	c.C933T	p.F311F	.	.	.
PHLDA1	22822	broad.mit.edu	36	12	74711001	74711001	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007350	exon1	c.A788G	p.D263G	.	.	.
E2F7	144455	broad.mit.edu	36	12	75951880	75951880	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203394	exon8	c.C1197A	p.V399V	.	.	.
E2F7	144455	broad.mit.edu	36	12	75963971	75963971	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203394	exon5	c.C807A	p.F269L	.	.	.
NAV3	89795	broad.mit.edu	36	12	76924649	76924649	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014903	exon8	c.G1200A	p.P400P	.	.	.
NAV3	89795	broad.mit.edu	36	12	76924905	76924905	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014903	exon8	c.G1456T	p.E486X	.	.	.
NAV3	89795	broad.mit.edu	36	12	77035955	77035955	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014903	exon14	c.G2787T	p.E929D	.	.	.
NAV3	89795	broad.mit.edu	36	12	77086721	77086721	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014903	exon24	c.C4925T	p.S1642F	.	.	.
NAV3	89795	broad.mit.edu	36	12	77097443	77097443	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014903	exon28	c.C5301T	p.I1767I	.	.	.
NAV3	89795	broad.mit.edu	36	12	77106558	77106558	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014903	exon32	c.T5859C	p.G1953G	.	.	.
NAV3	89795	broad.mit.edu	36	12	77115239	77115239	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014903	exon34	c.C6307A	p.L2103I	.	.	.
NAV3	89795	broad.mit.edu	36	12	77116532	77116532	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014903	exon35	c.A6397T	p.T2133S	.	.	.
NAV3	89795	broad.mit.edu	36	12	77122963	77122963	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014903	exon38	c.G6886T	p.D2296Y	.	.	.
GDF3	9573	broad.mit.edu	36	12	7733788	7733788	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020634	exon2	c.C1048A	p.L350I	.	.	.
CLEC4C	170482	broad.mit.edu	36	12	7785309	7785309	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203503	exon3	c.C117T	p.C39C	.	.	.
PAWR	5074	broad.mit.edu	36	12	78514525	78514525	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002583	exon5	c.G728A	p.R243Q	.	.	.
SLC2A14	144195	broad.mit.edu	36	12	7861795	7861795	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153449	exon11	c.G1243A	p.E415K	.	.	.
SLC2A14	144195	broad.mit.edu	36	12	7863440	7863440	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153449	exon10	c.C1045A	p.L349M	.	.	.
Unknown	0	broad.mit.edu	36	12	79254026	79254026	+	IGR	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173591	exon38	c.C4548A	p.I1516I	.	.	.
Unknown	0	broad.mit.edu	36	12	79270275	79270275	+	IGR	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173591	exon44	c.G5308A	p.A1770T	.	.	.
MYF6	4618	broad.mit.edu	36	12	79626488	79626488	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002469	exon2	c.G574A	p.D192N	.	.	.
PPFIA2	8499	broad.mit.edu	36	12	80212819	80212819	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003625	exon24	c.C2851T	p.R951C	.	.	.
PPFIA2	8499	broad.mit.edu	36	12	80257105	80257105	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003625	exon21	c.C2533T	p.R845X	.	.	.
PPFIA2	8499	broad.mit.edu	36	12	80594720	80594720	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003625	exon4	c.C284A	p.S95Y	.	.	.
C3AR1	719	broad.mit.edu	36	12	8103246	8103246	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004054	exon2	c.A803C	p.K268T	.	.	.
C3AR1	719	broad.mit.edu	36	12	8103574	8103574	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004054	exon2	c.G475A	p.V159M	.	.	.
C12orf26	84190	broad.mit.edu	36	12	81320947	81320947	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032230	exon5	c.C1186T	p.R396X	.	.	.
C12orf26	84190	broad.mit.edu	36	12	81374658	81374658	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032230	exon9	c.T1500G	p.I500M	.	.	.
C12orf26	84190	broad.mit.edu	36	12	81395235	81395235	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032230	exon11	c.G1692T	p.L564L	.	.	.
TMTC2	160335	broad.mit.edu	36	12	81948716	81948716	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152588	exon9	c.G2079T	p.K693N	.	.	.
TMTC2	160335	broad.mit.edu	36	12	82050248	82050248	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152588	exon12	c.C2460T	p.R820R	.	.	.
ZNF705A	440077	broad.mit.edu	36	12	8220905	8220905	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004328	exon5	c.C362T	p.S121L	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83790611	83790611	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182767	exon8	c.A1203C	p.E401D	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83790684	83790684	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182767	exon8	c.A1130C	p.K377T	.	.	.
TSPAN19	144448	broad.mit.edu	36	12	83947830	83947830	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100917	exon2	c.T26G	p.I9S	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	84016809	84016809	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032165	exon13	c.G3115T	p.E1039X	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	84042386	84042386	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032165	exon17	c.C3965A	p.S1322Y	.	.	.
ALX1	8092	broad.mit.edu	36	12	84201736	84201736	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006982	exon2	c.T482C	p.V161A	.	.	.
RASSF9	9182	broad.mit.edu	36	12	84723717	84723717	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005447	exon2	c.C202T	p.R68X	.	.	.
NTS	4922	broad.mit.edu	36	12	84800267	84800267	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006183	exon4	c.G496T	p.D166Y	.	.	.
WNK1	65125	broad.mit.edu	36	12	848002	848002	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001184985	exon9	c.C2849A	p.S950Y	.	.	.
MGAT4C	25834	broad.mit.edu	36	12	84897809	84897809	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013244	exon7	c.T826G	p.L276V	.	.	.
MGAT4C	25834	broad.mit.edu	36	12	84907394	84907394	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013244	exon5	c.G62T	p.R21I	.	.	.
CLEC4E	26253	broad.mit.edu	36	12	8579959	8579959	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014358	exon5	c.C482A	p.S161Y	.	.	.
C12orf29	91298	broad.mit.edu	36	12	86963660	86963660	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001009894	exon5	c.G592T	p.G198X	.	.	.
CEP290	80184	broad.mit.edu	36	12	86989260	86989260	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025114	exon43	c.G5953T	p.E1985X	.	.	.
CEP290	80184	broad.mit.edu	36	12	86989767	86989767	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025114	exon42	c.G5777A	p.R1926Q	.	.	.
CEP290	80184	broad.mit.edu	36	12	87029752	87029752	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025114	exon21	c.G2067T	p.K689N	.	.	.
CEP290	80184	broad.mit.edu	36	12	87036460	87036460	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025114	exon17	c.G1642T	p.E548X	.	.	.
CEP290	80184	broad.mit.edu	36	12	87038146	87038146	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025114	exon15	c.G1398T	p.K466N	.	.	.
TMTC3	160418	broad.mit.edu	36	12	87071244	87071244	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181783	exon3	c.C235T	p.R79C	.	.	.
TMTC3	160418	broad.mit.edu	36	12	87110564	87110564	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181783	exon13	c.C1759A	p.L587I	.	.	.
TMTC3	160418	broad.mit.edu	36	12	87112784	87112784	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181783	exon14	c.C1972A	p.L658I	.	.	.
KITLG	4254	broad.mit.edu	36	12	87436686	87436686	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003994	exon4	c.C282A	p.G94G	.	.	.
RIMKLB	57494	broad.mit.edu	36	12	8793727	8793727	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020734	exon4	c.C178A	p.L60M	.	.	.
RIMKLB	57494	broad.mit.edu	36	12	8793885	8793885	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020734	exon4	c.C336T	p.C112C	.	.	.
POC1B	282809	broad.mit.edu	36	12	88443082	88443082	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199781	exon2	c.G46T	p.G16C	.	.	.
ATP2B1	490	broad.mit.edu	36	12	88537946	88537946	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001323	exon10	c.G1790A	p.R597Q	.	.	.
ATP2B1	490	broad.mit.edu	36	12	88573608	88573608	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001323	exon1	c.T187G	p.L63V	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8867183	8867183	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144670	exon2	c.A201C	p.E67D	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8887026	8887026	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144670	exon12	c.T1278C	p.Y426Y	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8892654	8892654	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144670	exon16	c.G1905A	p.V635V	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8898675	8898675	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144670	exon22	c.C2745T	p.S915S	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8907801	8907801	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144670	exon29	c.C3647T	p.A1216V	.	.	.
C12orf12	196477	broad.mit.edu	36	12	89871604	89871604	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152638	exon1	c.G1047T	p.E349D	.	.	.
EPYC	1833	broad.mit.edu	36	12	89882210	89882210	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004950	exon7	c.G823A	p.E275K	.	.	.
EPYC	1833	broad.mit.edu	36	12	89887952	89887952	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004950	exon6	c.G798T	p.Q266H	.	.	.
KERA	11081	broad.mit.edu	36	12	89973354	89973354	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007035	exon2	c.G836A	p.R279Q	.	.	.
KERA	11081	broad.mit.edu	36	12	89973970	89973970	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007035	exon2	c.T220G	p.W74G	.	.	.
LUM	4060	broad.mit.edu	36	12	90026170	90026170	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002345	exon2	c.G718A	p.E240K	.	.	.
A2M	2	broad.mit.edu	36	12	9123628	9123628	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000014	exon24	c.C2905T	p.P969S	.	.	.
RAD52	5893	broad.mit.edu	36	12	912453	912453	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_134424	exon2	c.A33G	p.G11G	.	.	.
A2M	2	broad.mit.edu	36	12	9134297	9134297	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000014	exon20	c.G2518T	p.E840X	.	.	.
PLEKHG7	440107	broad.mit.edu	36	12	91682041	91682041	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004330	exon10	c.G874A	p.D292N	.	.	.
EEA1	8411	broad.mit.edu	36	12	91737327	91737327	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003566	exon14	c.T1616C	p.I539T	.	.	.
EEA1	8411	broad.mit.edu	36	12	91750588	91750588	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003566	exon11	c.G1085T	p.R362I	.	.	.
PZP	5858	broad.mit.edu	36	12	9197131	9197131	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002864	exon30	c.G3850A	p.V1284I	.	.	.
PZP	5858	broad.mit.edu	36	12	9209944	9209944	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002864	exon18	c.G2229T	p.E743D	.	.	.
PZP	5858	broad.mit.edu	36	12	9238054	9238054	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002864	exon11	c.C1140A	p.F380L	.	.	.
PZP	5858	broad.mit.edu	36	12	9245191	9245191	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002864	exon5	c.A500C	p.E167A	.	.	.
SOCS2	8835	broad.mit.edu	36	12	92493068	92493068	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003877	exon3	c.A579C	p.E193D	.	.	.
CRADD	8738	broad.mit.edu	36	12	92596933	92596933	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003805	exon2	c.G252A	p.E84E	.	.	.
PLXNC1	10154	broad.mit.edu	36	12	93104326	93104326	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005761	exon4	c.C1385T	p.S462L	.	.	.
PLXNC1	10154	broad.mit.edu	36	12	93197391	93197391	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005761	exon22	c.G3610A	p.V1204I	.	.	.
PLXNC1	10154	broad.mit.edu	36	12	93212419	93212419	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005761	exon24	c.C3906A	p.V1302V	.	.	.
CCDC41	51134	broad.mit.edu	36	12	93285848	93285848	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016122	exon11	c.T1196C	p.L399S	.	.	.
CCDC41	51134	broad.mit.edu	36	12	93329648	93329648	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016122	exon4	c.G280T	p.E94X	.	.	.
TMCC3	57458	broad.mit.edu	36	12	93496314	93496314	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020698	exon3	c.C1118T	p.S373L	.	.	.
NR2C1	7181	broad.mit.edu	36	12	93958491	93958491	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127362	exon10	c.C1145T	p.S382F	.	.	.
NR2C1	7181	broad.mit.edu	36	12	93967001	93967001	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127362	exon9	c.C1105T	p.L369F	.	.	.
FGD6	55785	broad.mit.edu	36	12	94012591	94012591	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018351	exon15	c.G3508T	p.E1170X	.	.	.
FGD6	55785	broad.mit.edu	36	12	94127111	94127111	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018351	exon2	c.G2080T	p.E694X	.	.	.
FGD6	55785	broad.mit.edu	36	12	94127717	94127717	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018351	exon2	c.C1474A	p.L492I	.	.	.
FGD6	55785	broad.mit.edu	36	12	94128229	94128229	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018351	exon2	c.G962A	p.R321Q	.	.	.
VEZT	55591	broad.mit.edu	36	12	94218270	94218270	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017599	exon12	c.C2030A	p.S677Y	.	.	.
METAP2	10988	broad.mit.edu	36	12	94394062	94394062	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006838	exon2	c.A236C	p.K79T	.	.	.
USP44	84101	broad.mit.edu	36	12	94451868	94451868	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042403	exon2	c.G296A	p.R99Q	.	.	.
NTN4	59277	broad.mit.edu	36	12	94628501	94628501	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021229	exon5	c.C1029T	p.F343F	.	.	.
NTN4	59277	broad.mit.edu	36	12	94705258	94705258	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021229	exon2	c.G175A	p.E59K	.	.	.
HAL	3034	broad.mit.edu	36	12	94898571	94898571	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002108	exon17	c.C1413T	p.I471I	.	.	.
HAL	3034	broad.mit.edu	36	12	94908416	94908416	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002108	exon10	c.G741T	p.E247D	.	.	.
NEDD1	121441	broad.mit.edu	36	12	95853084	95853084	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152905	exon7	c.G689T	p.R230I	.	.	.
NEDD1	121441	broad.mit.edu	36	12	95863664	95863664	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152905	exon14	c.G1717A	p.D573N	.	.	.
KLRB1	3820	broad.mit.edu	36	12	9639178	9639178	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002258	exon6	c.G637T	p.E213X	.	.	.
KLRB1	3820	broad.mit.edu	36	12	9651621	9651621	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002258	exon1	c.C82T	p.R28W	.	.	.
TMPO	7112	broad.mit.edu	36	12	97449744	97449744	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001032283	exon3	c.G562T	p.E188X	.	.	.
TMPO	7112	broad.mit.edu	36	12	97451589	97451589	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003276	exon4	c.G1423T	p.E475X	.	.	.
TMPO	7112	broad.mit.edu	36	12	97464286	97464286	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001032283	exon8	c.G1009T	p.E337X	.	.	.
SLC25A3	5250	broad.mit.edu	36	12	97519311	97519311	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002635	exon8	c.G960T	p.M320I	.	.	.
IKBIP	121457	broad.mit.edu	36	12	97531963	97531963	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201612	exon3	c.C584A	p.S195Y	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	97669390	97669390	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181670	exon12	c.C1296T	p.F432F	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	98693569	98693569	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152788	exon7	c.G849A	p.E283E	.	.	.
KLRF1	51348	broad.mit.edu	36	12	9876208	9876208	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016523	exon2	c.A115C	p.I39L	.	.	.
ACTR6	64431	broad.mit.edu	36	12	99128116	99128116	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022496	exon5	c.C514T	p.R172W	.	.	.
SCYL2	55681	broad.mit.edu	36	12	99200887	99200887	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017988	exon2	c.C8A	p.S3Y	.	.	.
SLC17A8	246213	broad.mit.edu	36	12	99321953	99321953	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139319	exon9	c.C1060A	p.L354I	.	.	.
SLC17A8	246213	broad.mit.edu	36	12	99338035	99338035	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139319	exon12	c.G1737T	p.Q579H	.	.	.
NR1H4	9971	broad.mit.edu	36	12	99458719	99458719	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005123	exon9	c.G1058A	p.R353Q	NR1H4,lung,NS,Substitution - Missense,0	.	.
OR4F15	390649	broad.mit.edu	36	15	100176006	100176006	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001674	exon1	c.T94G	p.L32V	.	.	.
OR4F15	390649	broad.mit.edu	36	15	100176239	100176239	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001674	exon1	c.C327A	p.G109G	.	.	.
POTEB	339010	broad.mit.edu	36	15	19305343	19305343	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207355	exon11	c.G1675T	p.E559X	.	.	.
POTEB	339010	broad.mit.edu	36	15	19307207	19307207	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207355	exon10	c.A1493G	p.Q498R	.	.	.
POTEB	339010	broad.mit.edu	36	15	19316973	19316973	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207355	exon8	c.G1232A	p.C411Y	.	.	.
POTEB	339010	broad.mit.edu	36	15	19328107	19328107	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207355	exon4	c.G838A	p.V280I	.	.	.
POTEB	339010	broad.mit.edu	36	15	19331019	19331019	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207355	exon3	c.C741A	p.I247I	.	.	.
OR4M2	390538	broad.mit.edu	36	15	19870033	19870033	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004719	exon1	c.C94A	p.L32I	.	.	.
OR4M2	390538	broad.mit.edu	36	15	19870443	19870443	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004719	exon1	c.C504T	p.F168F	.	.	.
OR4N4	283694	broad.mit.edu	36	15	19884651	19884651	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005241	exon1	c.C815A	p.S272Y	.	.	.
TUBGCP5	114791	broad.mit.edu	36	15	20400486	20400486	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052903	exon10	c.C1092A	p.F364L	.	.	.
TUBGCP5	114791	broad.mit.edu	36	15	20420320	20420320	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052903	exon20	c.C2751T	p.V917V	.	.	.
CYFIP1	23191	broad.mit.edu	36	15	20515289	20515289	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014608	exon21	c.G2362A	p.E788K	.	.	.
MKRN3	7681	broad.mit.edu	36	15	21362213	21362213	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005664	exon1	c.C191T	p.P64L	.	.	.
NDN	4692	broad.mit.edu	36	15	21482774	21482774	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002487	exon1	c.C684T	p.F228F	.	.	.
NDN	4692	broad.mit.edu	36	15	21483110	21483110	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002487	exon1	c.G348T	p.K116N	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22472302	22472302	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018958	exon1	c.C195T	p.F65F	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22472943	22472943	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018958	exon1	c.A836G	p.E279G	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22473031	22473031	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018958	exon1	c.C924A	p.F308L	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22474423	22474423	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018958	exon1	c.C2316A	p.P772P	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22474853	22474853	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018958	exon1	c.C2746A	p.L916M	.	.	.
UBE3A	7337	broad.mit.edu	36	15	23150655	23150655	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130839	exon11	c.C2292A	p.F764L	.	.	.
UBE3A	7337	broad.mit.edu	36	15	23152954	23152954	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130839	exon8	c.C1936T	p.R646C	.	.	.
UBE3A	7337	broad.mit.edu	36	15	23166906	23166906	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130839	exon6	c.G1508T	p.R503I	.	.	.
UBE3A	7337	broad.mit.edu	36	15	23167007	23167007	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130839	exon6	c.G1407T	p.E469D	.	.	.
UBE3A	7337	broad.mit.edu	36	15	23167347	23167347	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130839	exon6	c.G1067A	p.R356Q	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23491306	23491306	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024490	exon14	c.G2841T	p.K947N	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23513033	23513033	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024490	exon9	c.C1713A	p.F571L	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23577265	23577265	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024490	exon2	c.G648A	p.S216S	.	.	.
GABRB3	2562	broad.mit.edu	36	15	24344050	24344050	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021912	exon9	c.C1405T	p.L469L	.	.	.
GABRB3	2562	broad.mit.edu	36	15	24344125	24344125	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021912	exon9	c.G1330A	p.D444N	.	.	.
GABRB3	2562	broad.mit.edu	36	15	24417735	24417735	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021912	exon4	c.G280T	p.D94Y	.	.	.
GABRA5	2558	broad.mit.edu	36	15	24677140	24677140	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001165037	exon4	c.G141A	p.T47T	.	.	.
GABRA5	2558	broad.mit.edu	36	15	24679449	24679449	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001165037	exon5	c.C252T	p.F84F	.	.	.
GABRA5	2558	broad.mit.edu	36	15	24775967	24775967	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001165037	exon11	c.G1230T	p.E410D	.	.	.
OCA2	4948	broad.mit.edu	36	15	25790639	25790639	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000275	exon20	c.G2104T	p.E702X	.	.	.
HERC2	8924	broad.mit.edu	36	15	26048994	26048995	+	Nonsense_Mutation	DNP	GA	AG	AG	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004667	exon83	c.12711_12712CT	.	.	.	.
HERC2	8924	broad.mit.edu	36	15	26094307	26094307	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004667	exon64	c.C9777T	p.I3259I	.	.	.
HERC2	8924	broad.mit.edu	36	15	26134407	26134407	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004667	exon39	c.C6165T	p.V2055V	.	.	.
HERC2	8924	broad.mit.edu	36	15	26137407	26137407	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004667	exon38	c.G5851A	p.E1951K	.	.	.
HERC2	8924	broad.mit.edu	36	15	26140774	26140774	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004667	exon36	c.G5647A	p.D1883N	.	.	.
HERC2	8924	broad.mit.edu	36	15	26188070	26188070	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004667	exon11	c.G1365A	p.Q455Q	.	.	.
HERC2	8924	broad.mit.edu	36	15	26191730	26191730	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004667	exon8	c.G816A	p.T272T	.	.	.
APBA2	321	broad.mit.edu	36	15	27133722	27133722	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005503	exon3	c.G343T	p.D115Y	.	.	.
APBA2	321	broad.mit.edu	36	15	27173807	27173807	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005503	exon7	c.C1250T	p.A417V	.	.	.
TJP1	7082	broad.mit.edu	36	15	27788211	27788211	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175610	exon24	c.C4454A	p.S1485X	.	.	.
TJP1	7082	broad.mit.edu	36	15	27812130	27812130	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175610	exon14	c.G1918T	p.E640X	.	.	.
TJP1	7082	broad.mit.edu	36	15	27845882	27845882	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175610	exon5	c.G468A	p.P156P	.	.	.
ARHGAP11B	89839	broad.mit.edu	36	15	28710218	28710218	+	Silent	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039841	exon2	c.T150A	p.P50P	.	.	.
FAN1	22909	broad.mit.edu	36	15	28984446	28984446	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146095	exon2	c.T288C	p.D96D	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29112221	29112221	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002420	exon21	c.A2849C	p.K950T	.	.	.
OTUD7A	161725	broad.mit.edu	36	15	29583304	29583304	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130901	exon7	c.C882A	p.N294K	.	.	.
CHRNA7	1139	broad.mit.edu	36	15	30191374	30191374	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190455	exon4	c.A419G	p.D140G	.	.	.
ARHGAP11A	9824	broad.mit.edu	36	15	30705036	30705036	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199357	exon6	c.C772A	p.L258I	.	.	.
ARHGAP11A	9824	broad.mit.edu	36	15	30712479	30712479	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199357	exon9	c.C1113T	p.I371I	.	.	.
GREM1	26585	broad.mit.edu	36	15	30810530	30810530	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001191322	exon3	c.G137A	p.R46H	.	.	.
FMN1	342184	broad.mit.edu	36	15	31146047	31146047	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001103184	exon1	c.G1331A	p.R444Q	.	.	.
RYR3	6263	broad.mit.edu	36	15	31703396	31703396	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001036	exon20	c.G2454T	p.K818N	.	.	.
RYR3	6263	broad.mit.edu	36	15	31741831	31741831	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001036	exon35	c.G4808A	p.R1603Q	.	.	.
RYR3	6263	broad.mit.edu	36	15	31742279	31742279	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001036	exon35	c.C5256T	p.P1752P	.	.	.
RYR3	6263	broad.mit.edu	36	15	31827731	31827731	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001036	exon54	c.G8114A	p.R2705Q	.	.	.
RYR3	6263	broad.mit.edu	36	15	31834618	31834618	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001036	exon58	c.C8460T	p.F2820F	.	.	.
RYR3	6263	broad.mit.edu	36	15	31859783	31859783	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001036	exon65	c.C9217T	p.R3073C	.	.	.
RYR3	6263	broad.mit.edu	36	15	31896393	31896393	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001036	exon75	c.G10541T	p.R3514I	.	.	.
RYR3	6263	broad.mit.edu	36	15	31898172	31898172	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001036	exon76	c.G10701T	p.E3567D	.	.	.
RYR3	6263	broad.mit.edu	36	15	31910565	31910565	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001036	exon86	c.C11444A	p.S3815Y	.	.	.
RYR3	6263	broad.mit.edu	36	15	31921430	31921430	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001036	exon91	c.A13111C	p.K4371Q	.	.	.
RYR3	6263	broad.mit.edu	36	15	31921492	31921492	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001036	exon91	c.C13173A	p.F4391L	.	.	.
AVEN	57099	broad.mit.edu	36	15	32082611	32082611	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020371	exon2	c.G359A	p.R120Q	.	.	.
CHRM5	1133	broad.mit.edu	36	15	32143547	32143547	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012125	exon3	c.C1337A	p.A446D	.	.	.
PGBD4	161779	broad.mit.edu	36	15	32183717	32183717	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152595	exon1	c.G1693A	p.E565K	.	.	.
C15orf29	79768	broad.mit.edu	36	15	32243112	32243112	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024713	exon2	c.C58A	p.H20N	.	.	.
SLC12A6	9990	broad.mit.edu	36	15	32317886	32317886	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042497	exon19	c.C2596T	p.R866X	.	.	.
C15orf55	256646	broad.mit.edu	36	15	32436295	32436295	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175741	exon7	c.C2710A	p.L904I	.	.	.
AQR	9716	broad.mit.edu	36	15	32939565	32939565	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014691	exon34	c.T4113C	p.H1371H	.	.	.
AQR	9716	broad.mit.edu	36	15	32962107	32962107	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014691	exon27	c.G3053A	p.R1018Q	.	.	.
AQR	9716	broad.mit.edu	36	15	32980250	32980250	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014691	exon20	c.C2108T	p.S703L	.	.	.
AQR	9716	broad.mit.edu	36	15	33027777	33027777	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014691	exon5	c.G310T	p.E104X	.	.	.
ATPBD4	89978	broad.mit.edu	36	15	33601720	33601720	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001141972	exon4	c.G364A	p.D122N	.	.	.
MEIS2	4212	broad.mit.edu	36	15	34976127	34976127	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170676	exon10	c.C1030T	p.R344X	.	.	.
MEIS2	4212	broad.mit.edu	36	15	35177537	35177537	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_170676	exon2	c.G168A	p.P56P	.	.	.
MEIS2	4212	broad.mit.edu	36	15	35178951	35178951	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170676	exon1	c.A9G	p.Q3Q	.	.	.
SPRED1	161742	broad.mit.edu	36	15	36378904	36378904	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152594	exon2	c.G71A	p.R24Q	.	.	.
FAM98B	283742	broad.mit.edu	36	15	36549766	36549766	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173611	exon4	c.G399T	p.K133N	.	.	.
RASGRP1	10125	broad.mit.edu	36	15	36591122	36591122	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005739	exon8	c.C941T	p.S314L	.	.	.
THBS1	7057	broad.mit.edu	36	15	37661860	37661860	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003246	exon3	c.C242A	p.A81D	.	.	.
THBS1	7057	broad.mit.edu	36	15	37670086	37670086	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003246	exon14	c.C2223T	p.D741D	.	.	.
FSIP1	161835	broad.mit.edu	36	15	37697528	37697528	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152597	exon11	c.G1399T	p.D467Y	.	.	.
FSIP1	161835	broad.mit.edu	36	15	37817678	37817678	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152597	exon8	c.G797T	p.R266I	.	.	.
EIF2AK4	440275	broad.mit.edu	36	15	38053210	38053210	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013703	exon11	c.C1786A	p.L596I	.	.	.
EIF2AK4	440275	broad.mit.edu	36	15	38105481	38105481	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013703	exon33	c.C4401T	p.F1467F	.	.	.
BUB1B	701	broad.mit.edu	36	15	38292094	38292094	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001211	exon19	c.G2488T	p.D830Y	.	.	.
BUB1B	701	broad.mit.edu	36	15	38300087	38300087	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001211	exon23	c.C2988A	p.F996L	.	.	.
DISP2	85455	broad.mit.edu	36	15	38448433	38448433	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033510	exon8	c.G2828A	p.R943H	.	.	.
C15orf23	90417	broad.mit.edu	36	15	38471013	38471013	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033286	exon7	c.G713A	p.R238Q	.	.	.
CASC5	57082	broad.mit.edu	36	15	38703007	38703007	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_170589	exon11	c.G3331T	p.D1111Y	.	.	.
CASC5	57082	broad.mit.edu	36	15	38726536	38726536	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_170589	exon18	c.C6144T	p.I2048I	.	.	.
PPP1R14D	54866	broad.mit.edu	36	15	38908081	38908081	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130143	exon1	c.G51T	p.E17D	.	.	.
INO80	54617	broad.mit.edu	36	15	39129495	39129495	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017553	exon20	c.C2372A	p.S791Y	.	.	.
INO80	54617	broad.mit.edu	36	15	39134761	39134761	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017553	exon18	c.G2164A	p.E722K	.	.	.
INO80	54617	broad.mit.edu	36	15	39171569	39171569	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017553	exon5	c.G485A	p.R162Q	.	.	.
EXD1	161829	broad.mit.edu	36	15	39275435	39275435	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152596	exon6	c.G453T	p.K151N	.	.	.
NDUFAF1	51103	broad.mit.edu	36	15	39476499	39476499	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016013	exon2	c.C51T	p.F17F	.	.	.
RTF1	23168	broad.mit.edu	36	15	39545718	39545718	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015138	exon6	c.C865T	p.R289X	.	.	.
RPAP1	26015	broad.mit.edu	36	15	39606522	39606522	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015540	exon14	c.C1783T	p.R595X	.	.	.
TYRO3	7301	broad.mit.edu	36	15	39640747	39640747	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006293	exon2	c.C255A	p.N85K	.	.	.
MGA	23269	broad.mit.edu	36	15	39778566	39778566	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164273	exon5	c.G2105T	p.R702I	.	.	.
MGA	23269	broad.mit.edu	36	15	39808720	39808720	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164273	exon11	c.C3724T	p.R1242X	.	.	.
MGA	23269	broad.mit.edu	36	15	39839933	39839933	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164273	exon20	c.G7312T	p.E2438X	.	.	.
MGA	23269	broad.mit.edu	36	15	39845521	39845521	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164273	exon24	c.G7949A	p.R2650Q	.	.	.
SPTBN5	51332	broad.mit.edu	36	15	39932130	39932130	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016642	exon61	c.G10338T	p.K3446N	.	.	.
SPTBN5	51332	broad.mit.edu	36	15	39943269	39943269	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016642	exon41	c.G6969T	p.Q2323H	.	.	.
EHD4	30844	broad.mit.edu	36	15	39980216	39980216	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139265	exon6	c.C1545T	p.L515L	.	.	.
PLA2G4E	123745	broad.mit.edu	36	15	40068925	40068925	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080490	exon14	c.C1616A	p.S539Y	.	.	.
PLA2G4E	123745	broad.mit.edu	36	15	40069724	40069724	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080490	exon13	c.G1385T	p.R462I	.	.	.
PLA2G4E	123745	broad.mit.edu	36	15	40080699	40080699	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080490	exon6	c.C534A	p.V178V	.	.	.
PLA2G4F	255189	broad.mit.edu	36	15	40225132	40225132	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_213600	exon16	c.C1713A	p.I571I	.	.	.
GANC	2595	broad.mit.edu	36	15	40386071	40386071	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198141	exon7	c.A594C	p.K198N	.	.	.
CAPN3	825	broad.mit.edu	36	15	40469451	40469451	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_212465	exon10	c.G549A	p.T183T	.	.	.
ZFP106	64397	broad.mit.edu	36	15	40504335	40504335	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022473	exon13	c.C5110A	p.L1704I	.	.	.
ZFP106	64397	broad.mit.edu	36	15	40529751	40529751	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022473	exon2	c.C1942T	p.R648C	.	.	.
CDAN1	146059	broad.mit.edu	36	15	40815554	40815554	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138477	exon3	c.G584A	p.R195H	.	.	.
TTBK2	146057	broad.mit.edu	36	15	40832246	40832246	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173500	exon14	c.T2490G	p.T830T	.	.	.
TTBK2	146057	broad.mit.edu	36	15	40832416	40832416	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173500	exon14	c.C2320A	p.P774T	.	.	.
TTBK2	146057	broad.mit.edu	36	15	40854806	40854806	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173500	exon13	c.A1817C	p.N606T	.	.	.
UBR1	197131	broad.mit.edu	36	15	41096654	41096654	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174916	exon28	c.G2958A	p.K986K	.	.	.
UBR1	197131	broad.mit.edu	36	15	41126690	41126690	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174916	exon14	c.G1629T	p.K543N	.	.	.
UBR1	197131	broad.mit.edu	36	15	41126763	41126763	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174916	exon14	c.G1556T	p.R519L	.	.	.
UBR1	197131	broad.mit.edu	36	15	41127913	41127913	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174916	exon13	c.G1508A	p.R503Q	.	.	.
CCNDBP1	23582	broad.mit.edu	36	15	41269588	41269588	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012142	exon5	c.C375T	p.I125I	.	.	.
CCNDBP1	23582	broad.mit.edu	36	15	41271080	41271080	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_037370	exon6	c.C391T	p.R131W	.	.	.
CCNDBP1	23582	broad.mit.edu	36	15	41272286	41272286	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_037370	exon7	c.G530A	p.R177Q	.	.	.
TGM5	9333	broad.mit.edu	36	15	41315057	41315057	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004245	exon9	c.T1370C	p.L457P	.	.	.
TGM5	9333	broad.mit.edu	36	15	41318326	41318326	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004245	exon8	c.G1080T	p.E360D	.	.	.
TGM5	9333	broad.mit.edu	36	15	41339614	41339614	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201631	exon3	c.G364A	p.D122N	.	.	.
TGM7	116179	broad.mit.edu	36	15	41356451	41356451	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052955	exon12	c.G1874T	p.R625I	.	.	.
TGM7	116179	broad.mit.edu	36	15	41358698	41358698	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052955	exon11	c.G1748A	p.R583H	.	.	.
ZSCAN29	146050	broad.mit.edu	36	15	41440945	41440945	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152455	exon5	c.G2177T	p.R726I	.	.	.
ZSCAN29	146050	broad.mit.edu	36	15	41443678	41443678	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152455	exon4	c.C1417T	p.R473W	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41488540	41488540	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005657	exon26	c.G5432A	p.R1811Q	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41500110	41500110	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005657	exon21	c.G4351T	p.D1451Y	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41507597	41507597	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005657	exon18	c.G3722T	p.R1241I	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41535783	41535783	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005657	exon12	c.G2300T	p.R767I	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41535874	41535874	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005657	exon12	c.G2209T	p.E737X	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41558990	41558990	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005657	exon7	c.G670A	p.E224K	.	.	.
MAP1A	4130	broad.mit.edu	36	15	41600984	41600984	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002373	exon4	c.C21A	p.F7L	.	.	.
MAP1A	4130	broad.mit.edu	36	15	41601551	41601551	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002373	exon4	c.C588T	p.G196G	.	.	.
MAP1A	4130	broad.mit.edu	36	15	41605583	41605583	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002373	exon4	c.G4620T	p.K1540N	.	.	.
MAP1A	4130	broad.mit.edu	36	15	41605908	41605908	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002373	exon4	c.G4945A	p.E1649K	.	.	.
STRC	161497	broad.mit.edu	36	15	41687414	41687414	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153700	exon18	c.G3733A	p.E1245K	.	.	.
CATSPER2	117155	broad.mit.edu	36	15	41712213	41712213	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_054020	exon11	c.T1384G	p.S462A	.	.	.
CATSPER2	117155	broad.mit.edu	36	15	41712307	41712307	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_054020	exon11	c.G1290A	p.E430E	.	.	.
SERINC4	619189	broad.mit.edu	36	15	41874586	41874586	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001033517	exon11	c.A729G	p.P243P	.	.	.
CASC4	113201	broad.mit.edu	36	15	42408239	42408239	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_177974	exon3	c.G447A	p.K149K	.	.	.
CTDSPL2	51496	broad.mit.edu	36	15	42600805	42600805	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016396	exon12	c.C1244A	p.S415Y	.	.	.
EIF3J	8669	broad.mit.edu	36	15	42630380	42630380	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003758	exon3	c.C162T	p.D54D	.	.	.
EIF3J	8669	broad.mit.edu	36	15	42637005	42637005	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003758	exon6	c.G436T	p.D146Y	.	.	.
SPG11	80208	broad.mit.edu	36	15	42728463	42728463	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025137	exon7	c.G1495T	p.E499X	.	.	.
SPG11	80208	broad.mit.edu	36	15	42731387	42731387	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025137	exon6	c.G1050T	p.K350N	.	.	.
TRIM69	140691	broad.mit.edu	36	15	42834416	42834416	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182985	exon2	c.C33T	p.I11I	.	.	.
TRIM69	140691	broad.mit.edu	36	15	42846815	42846815	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182985	exon7	c.G1056T	p.K352N	.	.	.
SORD	6652	broad.mit.edu	36	15	43140664	43140664	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003104	exon4	c.G373A	p.D125N	.	.	.
DUOXA1	90527	broad.mit.edu	36	15	43198711	43198711	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144565	exon9	c.G917A	p.R306H	.	.	.
DUOX1	53905	broad.mit.edu	36	15	43223662	43223662	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017434	exon18	c.C2073T	p.F691F	.	.	.
DUOX1	53905	broad.mit.edu	36	15	43243030	43243030	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017434	exon33	c.C4257A	p.F1419L	.	.	.
C15orf48	84419	broad.mit.edu	36	15	43511622	43511622	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_197955	exon4	c.G183T	p.K61N	.	.	.
SLC30A4	7782	broad.mit.edu	36	15	43567052	43567052	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013309	exon6	c.G965A	p.R322Q	.	.	.
SEMA6D	80031	broad.mit.edu	36	15	45839845	45839845	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153619	exon3	c.G162T	p.Q54H	.	.	.
SEMA6D	80031	broad.mit.edu	36	15	45842567	45842567	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153619	exon9	c.G721A	p.A241T	.	.	.
SEMA6D	80031	broad.mit.edu	36	15	45843460	45843460	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153619	exon10	c.C869T	p.S290L	.	.	.
SLC12A1	6557	broad.mit.edu	36	15	46300415	46300415	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001184832	exon4	c.A558G	p.R186R	.	.	.
SLC12A1	6557	broad.mit.edu	36	15	46305967	46305967	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000338	exon5	c.C631A	p.L211I	.	.	.
SLC12A1	6557	broad.mit.edu	36	15	46312260	46312260	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001184832	exon8	c.C1020A	p.N340K	.	.	.
SLC12A1	6557	broad.mit.edu	36	15	46314396	46314396	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001184832	exon9	c.G1118A	p.R373H	.	.	.
SLC12A1	6557	broad.mit.edu	36	15	46347185	46347185	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001184832	exon18	c.C2290A	p.L764I	.	.	.
FBN1	2200	broad.mit.edu	36	15	46490745	46490745	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000138	exon66	c.C8350A	p.L2784I	.	.	.
FBN1	2200	broad.mit.edu	36	15	46495243	46495243	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000138	exon64	c.C7833T	p.C2611C	.	.	.
FBN1	2200	broad.mit.edu	36	15	46516510	46516510	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000138	exon53	c.G6436T	p.D2146Y	.	.	.
FBN1	2200	broad.mit.edu	36	15	46517281	46517281	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000138	exon51	c.G6289A	p.E2097K	.	.	.
FBN1	2200	broad.mit.edu	36	15	46536157	46536157	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000138	exon44	c.C5391A	p.F1797L	.	.	.
FBN1	2200	broad.mit.edu	36	15	46552136	46552136	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000138	exon35	c.C4240A	p.L1414I	.	.	.
FBN1	2200	broad.mit.edu	36	15	46563401	46563401	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000138	exon31	c.C3744A	p.I1248I	.	.	.
FBN1	2200	broad.mit.edu	36	15	46584595	46584595	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000138	exon16	c.C1879T	p.R627C	.	.	.
CEP152	22995	broad.mit.edu	36	15	46818071	46818071	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001194998	exon27	c.A4800G	p.E1600E	.	.	.
CEP152	22995	broad.mit.edu	36	15	46824449	46824449	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001194998	exon23	c.G3667T	p.E1223X	.	.	.
CEP152	22995	broad.mit.edu	36	15	46841924	46841924	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001194998	exon18	c.G2518A	p.E840K	.	.	.
CEP152	22995	broad.mit.edu	36	15	46877204	46877204	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001194998	exon4	c.G207A	p.E69E	.	.	.
CEP152	22995	broad.mit.edu	36	15	46885078	46885078	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001194998	exon2	c.G61A	p.E21K	.	.	.
SECISBP2L	9728	broad.mit.edu	36	15	47075937	47075937	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014701	exon16	c.C2407T	p.R803W	.	.	.
SECISBP2L	9728	broad.mit.edu	36	15	47088833	47088833	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014701	exon13	c.C1764T	p.L588L	.	.	.
SECISBP2L	9728	broad.mit.edu	36	15	47091262	47091262	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014701	exon12	c.G1687T	p.D563Y	.	.	.
SECISBP2L	9728	broad.mit.edu	36	15	47114860	47114860	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014701	exon3	c.G491A	p.R164Q	.	.	.
GALK2	2585	broad.mit.edu	36	15	47315406	47315406	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002044	exon4	c.C333A	p.F111L	.	.	.
C15orf33	196951	broad.mit.edu	36	15	47656326	47656326	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152647	exon7	c.C450T	p.S150S	.	.	.
C15orf33	196951	broad.mit.edu	36	15	47690755	47690755	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152647	exon3	c.A54T	p.K18N	.	.	.
DTWD1	56986	broad.mit.edu	36	15	47714074	47714074	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001144955	exon4	c.C458A	p.S153Y	.	.	.
ATP8B4	79895	broad.mit.edu	36	15	47941817	47941817	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024837	exon27	c.C3214A	p.L1072I	.	.	.
ATP8B4	79895	broad.mit.edu	36	15	48052079	48052079	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024837	exon13	c.G1235T	p.R412I	.	.	.
HDC	3067	broad.mit.edu	36	15	48331952	48331952	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002112	exon9	c.G1008A	p.R336R	.	.	.
HDC	3067	broad.mit.edu	36	15	48337936	48337936	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002112	exon3	c.G275T	p.G92V	.	.	.
GABPB1	2553	broad.mit.edu	36	15	48358215	48358215	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005254	exon9	c.G1094A	p.R365Q	.	.	.
GABPB1	2553	broad.mit.edu	36	15	48365640	48365640	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002041	exon8	c.G952T	p.E318X	.	.	.
USP8	9101	broad.mit.edu	36	15	48561245	48561245	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128611	exon12	c.A1494G	p.E498E	.	.	.
USP8	9101	broad.mit.edu	36	15	48573664	48573664	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128611	exon17	c.A2553C	p.K851N	.	.	.
USP50	373509	broad.mit.edu	36	15	48618292	48618292	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_203494	exon5	c.G709A	p.E237K	.	.	.
USP50	373509	broad.mit.edu	36	15	48623159	48623159	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_203494	exon3	c.G372A	p.T124T	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48641181	48641181	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017672	exon39	c.C5584T	p.R1862C	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48689122	48689122	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017672	exon19	c.G2528A	p.R843Q	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48716922	48716922	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017672	exon7	c.G821T	p.R274I	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48737289	48737289	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017672	exon3	c.A103T	p.I35F	.	.	.
SPPL2A	84888	broad.mit.edu	36	15	48828189	48828189	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032802	exon3	c.T348C	p.N116N	.	.	.
AP4E1	23431	broad.mit.edu	36	15	49004656	49004656	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007347	exon5	c.G490A	p.E164K	.	.	.
AP4E1	23431	broad.mit.edu	36	15	49010296	49010296	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007347	exon7	c.G705T	p.E235D	.	.	.
AP4E1	23431	broad.mit.edu	36	15	49076869	49076869	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007347	exon18	c.G2401T	p.E801X	.	.	.
AP4E1	23431	broad.mit.edu	36	15	49077000	49077000	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007347	exon18	c.G2532T	p.K844N	.	.	.
TNFAIP8L3	388121	broad.mit.edu	36	15	49137493	49137493	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207381	exon3	c.C756A	p.V252V	.	.	.
CYP19A1	1588	broad.mit.edu	36	15	49290532	49290532	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031226	exon11	c.A1277G	p.Y426C	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49578523	49578523	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015263	exon18	c.G4190A	p.R1397Q	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49593955	49593955	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015263	exon15	c.G2620T	p.E874X	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49615960	49615960	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015263	exon12	c.A2009C	p.H670P	.	.	.
SCG3	29106	broad.mit.edu	36	15	49762026	49762026	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013243	exon2	c.G103A	p.E35K	.	.	.
MAPK6	5597	broad.mit.edu	36	15	50143519	50143519	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002748	exon6	c.G1196A	p.R399Q	.	.	.
MYO5C	55930	broad.mit.edu	36	15	50319283	50319283	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018728	exon21	c.T2642C	p.F881S	.	.	.
MYO5C	55930	broad.mit.edu	36	15	50340530	50340530	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018728	exon10	c.C1134T	p.I378I	.	.	.
MYO5C	55930	broad.mit.edu	36	15	50355148	50355148	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018728	exon5	c.C509T	p.S170L	.	.	.
MYO5A	4644	broad.mit.edu	36	15	50449867	50449867	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000259	exon22	c.C2857A	p.L953M	.	.	.
KIAA1370	56204	broad.mit.edu	36	15	50664277	50664277	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019600	exon12	c.C3034T	p.R1012X	.	.	.
KIAA1370	56204	broad.mit.edu	36	15	50684704	50684704	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019600	exon7	c.G2378A	p.R793Q	.	.	.
KIAA1370	56204	broad.mit.edu	36	15	50689515	50689515	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019600	exon6	c.A888C	p.K296N	.	.	.
WDR72	256764	broad.mit.edu	36	15	51597229	51597229	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182758	exon20	c.C3268A	p.H1090N	.	.	.
WDR72	256764	broad.mit.edu	36	15	51602749	51602749	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182758	exon19	c.G3211A	p.D1071N	.	.	.
WDR72	256764	broad.mit.edu	36	15	51695014	51695014	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182758	exon15	c.C2681A	p.S894Y	.	.	.
WDR72	256764	broad.mit.edu	36	15	51745231	51745231	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182758	exon14	c.G1792T	p.E598X	.	.	.
WDR72	256764	broad.mit.edu	36	15	51784690	51784690	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182758	exon11	c.G1135T	p.D379Y	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52093626	52093626	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080534	exon1	c.G1234T	p.D412Y	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52094307	52094307	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080534	exon1	c.G1915A	p.D639N	.	.	.
PIGB	9488	broad.mit.edu	36	15	53434319	53434319	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004855	exon11	c.C1369A	p.L457I	.	.	.
PYGO1	26108	broad.mit.edu	36	15	53628406	53628406	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015617	exon2	c.T129C	p.N43N	.	.	.
NEDD4	4734	broad.mit.edu	36	15	53909398	53909398	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006154	exon29	c.G2692T	p.G898X	.	.	.
NEDD4	4734	broad.mit.edu	36	15	53932017	53932017	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006154	exon13	c.C1043A	p.S348Y	.	.	.
NEDD4	4734	broad.mit.edu	36	15	53949160	53949160	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006154	exon8	c.G416T	p.R139I	.	.	.
NEDD4	4734	broad.mit.edu	36	15	53995252	53995252	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198400	exon1	c.C1070T	p.S357L	.	.	.
RFX7	64864	broad.mit.edu	36	15	54173078	54173078	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022841	exon9	c.C4140A	p.F1380L	.	.	.
MNS1	55329	broad.mit.edu	36	15	54513838	54513838	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018365	exon8	c.T1059G	p.D353E	.	.	.
ZNF280D	54816	broad.mit.edu	36	15	54756235	54756235	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017661	exon13	c.G1335T	p.K445N	.	.	.
TCF12	6938	broad.mit.edu	36	15	55312271	55312271	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207037	exon11	c.C895T	p.R299C	.	.	.
TCF12	6938	broad.mit.edu	36	15	55352617	55352617	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207037	exon19	c.C1843T	p.R615W	.	.	.
TCF12	6938	broad.mit.edu	36	15	55361991	55361991	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207037	exon20	c.T2035C	p.S679P	.	.	.
CGNL1	84952	broad.mit.edu	36	15	55517877	55517877	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032866	exon2	c.C388A	p.L130I	.	.	.
CGNL1	84952	broad.mit.edu	36	15	55518197	55518197	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032866	exon2	c.C708A	p.N236K	.	.	.
LIPC	3990	broad.mit.edu	36	15	56625295	56625295	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000236	exon5	c.G637T	p.D213Y	.	.	.
LIPC	3990	broad.mit.edu	36	15	56643056	56643056	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000236	exon8	c.C1230T	p.I410I	.	.	.
ADAM10	102	broad.mit.edu	36	15	56712816	56712816	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001110	exon9	c.C1047A	p.L349L	.	.	.
FAM63B	54629	broad.mit.edu	36	15	56851450	56851450	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040453	exon1	c.C564A	p.S188R	.	.	.
SLTM	79811	broad.mit.edu	36	15	56969911	56969911	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024755	exon15	c.G1940A	p.R647H	.	.	.
SLTM	79811	broad.mit.edu	36	15	56979121	56979121	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024755	exon7	c.G897T	p.M299I	.	.	.
RNF111	54778	broad.mit.edu	36	15	57131903	57131903	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017610	exon3	c.A988C	p.T330P	.	.	.
MYO1E	4643	broad.mit.edu	36	15	57267691	57267691	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004998	exon18	c.G1822A	p.E608K	.	.	.
MYO1E	4643	broad.mit.edu	36	15	57274986	57274986	+	Missense_Mutation	SNP	C	T	T	rs11539755	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004998	exon17	c.G1771A	p.E591K	.	.	.
LDHAL6B	92483	broad.mit.edu	36	15	57287377	57287377	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033195	exon1	c.C946A	p.L316I	.	.	.
GCNT3	9245	broad.mit.edu	36	15	57698662	57698662	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004751	exon3	c.G933T	p.K311N	.	.	.
VPS13C	54832	broad.mit.edu	36	15	59956526	59956526	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017684	exon73	c.C10033T	p.R3345X	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60001982	60001982	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017684	exon52	c.G6752A	p.R2251Q	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60006761	60006761	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017684	exon50	c.G6208T	p.E2070X	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60010583	60010583	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017684	exon48	c.G5907A	p.S1969S	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60043341	60043341	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017684	exon30	c.G3187A	p.E1063K	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60056589	60056589	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017684	exon22	c.G2263T	p.D755Y	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60092536	60092536	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017684	exon9	c.G690T	p.Q230H	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60093441	60093441	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017684	exon8	c.G598T	p.D200Y	.	.	.
TLN2	83660	broad.mit.edu	36	15	60820203	60820203	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015059	exon29	c.C3968A	p.S1323Y	.	.	.
TLN2	83660	broad.mit.edu	36	15	60827932	60827932	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015059	exon30	c.C4116T	p.L1372L	.	.	.
TLN2	83660	broad.mit.edu	36	15	60831891	60831891	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015059	exon32	c.C4305A	p.L1435L	.	.	.
TLN2	83660	broad.mit.edu	36	15	60845863	60845863	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015059	exon38	c.G5146A	p.D1716N	.	.	.
TLN2	83660	broad.mit.edu	36	15	60871895	60871895	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015059	exon43	c.C5739T	p.I1913I	.	.	.
TLN2	83660	broad.mit.edu	36	15	60919814	60919814	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015059	exon56	c.G7581T	p.Q2527H	.	.	.
RAB8B	51762	broad.mit.edu	36	15	61334827	61334827	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016530	exon4	c.C315A	p.N105K	.	.	.
APH1B	83464	broad.mit.edu	36	15	61358419	61358419	+	Missense_Mutation	SNP	C	A	A	rs11554840	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031301	exon2	c.C120A	p.F40L	.	.	.
HERC1	8925	broad.mit.edu	36	15	61730530	61730530	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003922	exon53	c.G10521T	p.K3507N	.	.	.
HERC1	8925	broad.mit.edu	36	15	61742399	61742399	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003922	exon44	c.C8738A	p.S2913Y	.	.	.
HERC1	8925	broad.mit.edu	36	15	61753896	61753896	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003922	exon38	c.C7544T	p.A2515V	.	.	.
HERC1	8925	broad.mit.edu	36	15	61771759	61771759	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003922	exon31	c.C5734T	p.R1912C	.	.	.
HERC1	8925	broad.mit.edu	36	15	61812396	61812396	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003922	exon14	c.G2648T	p.R883I	.	.	.
SNX1	6642	broad.mit.edu	36	15	62207058	62207058	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003099	exon8	c.G807T	p.E269D	.	.	.
SNX1	6642	broad.mit.edu	36	15	62215617	62215617	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003099	exon13	c.C1401T	p.F467F	.	.	.
ZNF609	23060	broad.mit.edu	36	15	62578735	62578735	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015042	exon1	c.G64A	p.D22N	.	.	.
OAZ2	4947	broad.mit.edu	36	15	62769720	62769720	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002537	exon3	c.G260A	p.R87Q	.	.	.
ANKDD1A	348094	broad.mit.edu	36	15	63026850	63026850	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182703	exon13	c.C1335T	p.I445I	.	.	.
ANKDD1A	348094	broad.mit.edu	36	15	63029209	63029209	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182703	exon14	c.C1446T	p.F482F	.	.	.
MTFMT	123263	broad.mit.edu	36	15	63082612	63082612	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139242	exon9	c.G1011T	p.K337N	.	.	.
CILP	8483	broad.mit.edu	36	15	63277133	63277133	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003613	exon9	c.C2544T	p.G848G	.	.	.
IGDCC3	9543	broad.mit.edu	36	15	63411398	63411398	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004884	exon7	c.T1082C	p.V361A	.	.	.
SLC24A1	9187	broad.mit.edu	36	15	63704077	63704077	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004727	exon2	c.G606A	p.P202P	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63812181	63812181	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001144823	exon8	c.C1070A	p.P357H	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63831971	63831971	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001144823	exon4	c.C361A	p.Q121K	.	.	.
RAB11A	8766	broad.mit.edu	36	15	63956781	63956781	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004663	exon2	c.G98A	p.R33Q	.	.	.
MEGF11	84465	broad.mit.edu	36	15	63997464	63997464	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032445	exon16	c.G1980A	p.G660G	.	.	.
DIS3L	115752	broad.mit.edu	36	15	64412442	64412442	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001143688	exon17	c.G2903A	p.R968K	.	.	.
MAP2K1	5604	broad.mit.edu	36	15	64568644	64568644	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002755	exon9	c.A998C	p.E333A	.	.	.
SMAD3	4088	broad.mit.edu	36	15	65246172	65246172	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145103	exon4	c.G402T	p.E134D	.	.	.
IQCH	64799	broad.mit.edu	36	15	65451756	65451756	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031715	exon9	c.A1007T	p.K336I	.	.	.
IQCH	64799	broad.mit.edu	36	15	65500924	65500924	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031715	exon16	c.G2460A	p.S820S	.	.	.
MAP2K5	5607	broad.mit.edu	36	15	65772959	65772959	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145160	exon15	c.C971T	p.A324V	.	.	.
SKOR1	390598	broad.mit.edu	36	15	65905850	65905850	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031807	exon2	c.C603T	p.C201C	.	.	.
CALML4	91860	broad.mit.edu	36	15	66276941	66276941	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031733	exon3	c.A243C	p.E81D	.	.	.
ITGA11	22801	broad.mit.edu	36	15	66399752	66399752	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004439	exon20	c.C2441T	p.A814V	.	.	.
NOX5	79400	broad.mit.edu	36	15	67128436	67128436	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184779	exon14	c.C1899T	p.A633A	.	.	.
GLCE	26035	broad.mit.edu	36	15	67335251	67335251	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015554	exon3	c.G52A	p.A18T	.	.	.
GLCE	26035	broad.mit.edu	36	15	67335661	67335661	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015554	exon3	c.C462A	p.F154L	.	.	.
GLCE	26035	broad.mit.edu	36	15	67348221	67348221	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015554	exon5	c.C1438A	p.L480I	.	.	.
KIF23	9493	broad.mit.edu	36	15	67505538	67505538	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004856	exon8	c.G810T	p.V270V	.	.	.
UACA	55075	broad.mit.edu	36	15	68746152	68746152	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018003	exon16	c.G3925T	p.E1309X	.	.	.
UACA	55075	broad.mit.edu	36	15	68747874	68747874	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018003	exon16	c.A2203C	p.N735H	.	.	.
UACA	55075	broad.mit.edu	36	15	68759068	68759068	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018003	exon10	c.G824A	p.R275Q	.	.	.
LARP6	55323	broad.mit.edu	36	15	68911949	68911949	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018357	exon3	c.C972T	p.V324V	.	.	.
LARP6	55323	broad.mit.edu	36	15	68912132	68912132	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018357	exon3	c.C789T	p.F263F	.	.	.
THSD4	79875	broad.mit.edu	36	15	69739961	69739961	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024817	exon7	c.C1191T	p.V397V	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69978293	69978293	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006901	exon25	c.G3605T	p.R1202I	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69982424	69982424	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006901	exon22	c.G2912A	p.R971Q	.	.	.
MYO9A	4649	broad.mit.edu	36	15	70014797	70014797	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006901	exon17	c.G2461T	p.D821Y	.	.	.
MYO9A	4649	broad.mit.edu	36	15	70018252	70018252	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006901	exon16	c.C2373A	p.N791K	.	.	.
GRAMD2	196996	broad.mit.edu	36	15	70248352	70248352	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001012642	exon3	c.G174T	p.K58N	.	.	.
PKM2	5315	broad.mit.edu	36	15	70288039	70288039	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002654	exon6	c.C813T	p.I271I	.	.	.
TMEM202	338949	broad.mit.edu	36	15	70486539	70486539	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080462	exon4	c.G546A	p.R182R	.	.	.
ARIH1	25820	broad.mit.edu	36	15	70634696	70634696	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005744	exon4	c.T619C	p.F207L	.	.	.
ARIH1	25820	broad.mit.edu	36	15	70640931	70640931	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005744	exon6	c.A791C	p.N264T	.	.	.
NEO1	4756	broad.mit.edu	36	15	71329101	71329101	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172623	exon11	c.G1880A	p.R627Q	.	.	.
NEO1	4756	broad.mit.edu	36	15	71334183	71334183	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172623	exon13	c.G2052T	p.E684D	.	.	.
HCN4	10021	broad.mit.edu	36	15	71403620	71403620	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005477	exon7	c.G2006A	p.R669H	.	.	.
HCN4	10021	broad.mit.edu	36	15	71404530	71404530	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005477	exon6	c.G1797A	p.A599A	.	.	.
ARID3B	10620	broad.mit.edu	36	15	72671200	72671200	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006465	exon7	c.A1412G	p.N471S	.	.	.
CPLX3	594855	broad.mit.edu	36	15	72909730	72909730	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001030005	exon3	c.G459T	p.E153D	.	.	.
C15orf39	56905	broad.mit.edu	36	15	73286626	73286626	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015492	exon2	c.G1184A	p.G395E	.	.	.
SIN3A	25942	broad.mit.edu	36	15	73451602	73451602	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145358	exon21	c.C3593T	p.S1198F	.	.	.
SIN3A	25942	broad.mit.edu	36	15	73472106	73472106	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145358	exon15	c.T2381G	p.I794S	.	.	.
SIN3A	25942	broad.mit.edu	36	15	73480222	73480222	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145358	exon11	c.G1639T	p.D547Y	.	.	.
SIN3A	25942	broad.mit.edu	36	15	73486536	73486536	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145358	exon9	c.G1320T	p.K440N	.	.	.
SIN3A	25942	broad.mit.edu	36	15	73491016	73491016	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145358	exon6	c.C878T	p.A293V	.	.	.
SIN3A	25942	broad.mit.edu	36	15	73493622	73493622	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145358	exon4	c.C450A	p.I150I	.	.	.
SIN3A	25942	broad.mit.edu	36	15	73502163	73502163	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145358	exon3	c.C244A	p.H82N	.	.	.
PTPN9	5780	broad.mit.edu	36	15	73585108	73585108	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002833	exon7	c.C931T	p.R311C	.	.	.
SNUPN	10073	broad.mit.edu	36	15	73680575	73680575	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042581	exon8	c.G718A	p.E240K	.	.	.
FBXO22	26263	broad.mit.edu	36	15	73993515	73993515	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_147188	exon4	c.G377T	p.R126I	.	.	.
ETFA	2108	broad.mit.edu	36	15	74305315	74305315	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127716	exon10	c.C746T	p.A249V	.	.	.
SCAPER	49855	broad.mit.edu	36	15	74430669	74430669	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145923	exon31	c.C3325A	p.P1109T	.	.	.
RCN2	5955	broad.mit.edu	36	15	75028468	75028468	+	Silent	SNP	G	A	A	rs17849874	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002902	exon7	c.G804A	p.A268A	.	.	.
TSPAN3	10099	broad.mit.edu	36	15	75132269	75132269	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001168412	exon4	c.G298T	p.E100X	.	.	.
SGK269	79834	broad.mit.edu	36	15	75259893	75259893	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024776	exon3	c.C1431T	p.V477V	.	.	.
SGK269	79834	broad.mit.edu	36	15	75260416	75260416	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024776	exon3	c.G908T	p.R303I	.	.	.
LINGO1	84894	broad.mit.edu	36	15	75695031	75695031	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032808	exon2	c.C273T	p.F91F	.	.	.
TBC1D2B	23102	broad.mit.edu	36	15	76109567	76109567	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144572	exon4	c.G684A	p.K228K	.	.	.
IDH3A	3419	broad.mit.edu	36	15	76242922	76242922	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005530	exon7	c.T630G	p.L210L	.	.	.
IDH3A	3419	broad.mit.edu	36	15	76248391	76248391	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005530	exon11	c.G1090T	p.D364Y	.	.	.
IREB2	3658	broad.mit.edu	36	15	76551243	76551243	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004136	exon7	c.G805T	p.D269Y	.	.	.
IREB2	3658	broad.mit.edu	36	15	76557754	76557754	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004136	exon10	c.G1256A	p.R419Q	.	.	.
IREB2	3658	broad.mit.edu	36	15	76576649	76576649	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004136	exon21	c.G2722T	p.E908X	.	.	.
CHRNA5	1138	broad.mit.edu	36	15	76669990	76669990	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000745	exon5	c.G1202A	p.R401H	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77051307	77051307	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002891	exon27	c.C3685T	p.R1229C	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77071166	77071166	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002891	exon22	c.T3101G	p.F1034C	.	.	.
TMED3	23423	broad.mit.edu	36	15	77393223	77393223	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007364	exon2	c.G238T	p.E80X	.	.	.
KIAA1024	23251	broad.mit.edu	36	15	77536396	77536396	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015206	exon2	c.G852A	p.E284E	.	.	.
KIAA1024	23251	broad.mit.edu	36	15	77537722	77537722	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015206	exon2	c.C2178A	p.I726I	.	.	.
FAH	2184	broad.mit.edu	36	15	78252535	78252535	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000137	exon9	c.G831A	p.P277P	.	.	.
ARNT2	9915	broad.mit.edu	36	15	78549640	78549640	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014862	exon4	c.G221A	p.R74H	.	.	.
KIAA1199	57214	broad.mit.edu	36	15	78960380	78960380	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018689	exon5	c.A465G	p.G155G	.	.	.
MESDC2	23184	broad.mit.edu	36	15	79058819	79058819	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015154	exon3	c.C501A	p.A167A	.	.	.
C15orf26	161502	broad.mit.edu	36	15	79215923	79215923	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173528	exon3	c.C171T	p.S57S	.	.	.
C15orf26	161502	broad.mit.edu	36	15	79223149	79223149	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173528	exon5	c.T569C	p.V190A	.	.	.
IL16	3603	broad.mit.edu	36	15	79345101	79345101	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172128	exon4	c.G468T	p.K156N	.	.	.
IL16	3603	broad.mit.edu	36	15	79362103	79362103	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172128	exon9	c.G1150A	p.V384I	.	.	.
IL16	3603	broad.mit.edu	36	15	79376376	79376376	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172128	exon13	c.G1955T	p.R652I	.	.	.
IL16	3603	broad.mit.edu	36	15	79379257	79379257	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172128	exon14	c.C2535A	p.S845S	.	.	.
IL16	3603	broad.mit.edu	36	15	79385439	79385439	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001172128	exon17	c.C3556T	p.R1186X	.	.	.
MEX3B	84206	broad.mit.edu	36	15	80122586	80122586	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032246	exon2	c.G1680A	p.A560A	.	.	.
MEX3B	84206	broad.mit.edu	36	15	80123650	80123650	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032246	exon2	c.G616A	p.E206K	.	.	.
FAM154B	283726	broad.mit.edu	36	15	80351112	80351112	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008226	exon2	c.C167T	p.S56L	.	.	.
CPEB1	64506	broad.mit.edu	36	15	81013034	81013034	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001079535	exon8	c.C1183A	p.R395S	.	.	.
CPEB1	64506	broad.mit.edu	36	15	81021842	81021842	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001079535	exon3	c.C467A	p.S156Y	.	.	.
CPEB1	64506	broad.mit.edu	36	15	81037218	81037218	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001079535	exon1	c.C85A	p.L29M	.	.	.
FSD2	123722	broad.mit.edu	36	15	81252663	81252663	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001007122	exon2	c.C534A	p.V178V	.	.	.
BNC1	646	broad.mit.edu	36	15	81723033	81723033	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001717	exon4	c.C1974A	p.F658L	.	.	.
BNC1	646	broad.mit.edu	36	15	81723840	81723840	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001717	exon4	c.C1167T	p.I389I	.	.	.
SH3GL3	6457	broad.mit.edu	36	15	82032380	82032380	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003027	exon5	c.C391A	p.L131I	.	.	.
SH3GL3	6457	broad.mit.edu	36	15	82077962	82077962	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003027	exon9	c.C963A	p.N321K	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82330661	82330661	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207517	exon9	c.C906T	p.S302S	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82442193	82442193	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207517	exon21	c.C2809T	p.R937X	.	.	.
ZSCAN2	54993	broad.mit.edu	36	15	82966263	82966263	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181877	exon3	c.G1833T	p.E611D	.	.	.
ZNF592	9640	broad.mit.edu	36	15	83127333	83127333	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014630	exon4	c.C423A	p.F141L	.	.	.
ZNF592	9640	broad.mit.edu	36	15	83129045	83129045	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014630	exon4	c.A2135C	p.K712T	.	.	.
ALPK3	57538	broad.mit.edu	36	15	83183266	83183266	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020778	exon4	c.G962A	p.R321H	.	.	.
ALPK3	57538	broad.mit.edu	36	15	83185013	83185013	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020778	exon5	c.C2105A	p.S702Y	.	.	.
SLC28A1	9154	broad.mit.edu	36	15	83234739	83234739	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201651	exon5	c.C247T	p.R83X	.	.	.
AKAP13	11214	broad.mit.edu	36	15	84037544	84037544	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006738	exon17	c.G5334T	p.E1778D	.	.	.
AKAP13	11214	broad.mit.edu	36	15	84071346	84071346	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006738	exon28	c.G6880T	p.E2294X	.	.	.
AGBL1	123624	broad.mit.edu	36	15	84741627	84741627	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152336	exon17	c.G2263A	p.A755T	.	.	.
AGBL1	123624	broad.mit.edu	36	15	85332278	85332278	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152336	exon23	c.C3140T	p.A1047V	.	.	.
NTRK3	4916	broad.mit.edu	36	15	86325544	86325544	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007156	exon14	c.G1637T	p.R546I	.	.	.
NTRK3	4916	broad.mit.edu	36	15	86377194	86377194	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007156	exon13	c.G1483T	p.D495Y	.	.	.
ACAN	176	broad.mit.edu	36	15	87199463	87199463	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135	exon12	c.C2643A	p.D881E	.	.	.
ACAN	176	broad.mit.edu	36	15	87201445	87201445	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135	exon12	c.T4625G	p.F1542C	.	.	.
ACAN	176	broad.mit.edu	36	15	87201811	87201811	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135	exon12	c.C4991T	p.S1664F	.	.	.
MFGE8	4240	broad.mit.edu	36	15	87243933	87243933	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005928	exon7	c.G984A	p.A328A	.	.	.
ABHD2	11057	broad.mit.edu	36	15	87496051	87496051	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152924	exon4	c.G334A	p.D112N	.	.	.
RLBP1	6017	broad.mit.edu	36	15	87554633	87554633	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000326	exon9	c.G841A	p.D281N	.	.	.
RLBP1	6017	broad.mit.edu	36	15	87559464	87559464	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000326	exon6	c.A356C	p.N119T	.	.	.
FANCI	55215	broad.mit.edu	36	15	87618420	87618420	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018193	exon12	c.G993T	p.K331N	.	.	.
FANCI	55215	broad.mit.edu	36	15	87635859	87635859	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018193	exon20	c.C1902A	p.F634L	.	.	.
C15orf42	90381	broad.mit.edu	36	15	87936408	87936408	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152259	exon5	c.T1538G	p.F513C	.	.	.
KIF7	374654	broad.mit.edu	36	15	87973760	87973760	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198525	exon17	c.G3367A	p.E1123K	.	.	.
KIF7	374654	broad.mit.edu	36	15	87978040	87978040	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198525	exon12	c.G2473A	p.E825K	.	.	.
PLIN1	5346	broad.mit.edu	36	15	88014338	88014338	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002666	exon5	c.G475T	p.D159Y	.	.	.
PEX11A	8800	broad.mit.edu	36	15	88027614	88027614	+	Nonstop_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003847	exon3	c.T742G	p.X248E	.	.	.
WDR93	56964	broad.mit.edu	36	15	88056302	88056302	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020212	exon5	c.C603A	p.I201I	.	.	.
WDR93	56964	broad.mit.edu	36	15	88087531	88087531	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020212	exon17	c.C1966T	p.R656W	.	.	.
ANPEP	290	broad.mit.edu	36	15	88143708	88143708	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001150	exon13	c.G1906A	p.E636K	.	.	.
AP3S2	10239	broad.mit.edu	36	15	88248105	88248105	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182616	exon4	c.C416T	p.A139V	.	.	.
ZNF710	374655	broad.mit.edu	36	15	88412799	88412799	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198526	exon2	c.C1426A	p.H476N	.	.	.
TTLL13	440307	broad.mit.edu	36	15	88602370	88602370	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001029964	exon9	c.C1032A	p.I344I	.	.	.
ZNF774	342132	broad.mit.edu	36	15	88705167	88705167	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004309	exon4	c.G1100T	p.R367I	.	.	.
ZNF774	342132	broad.mit.edu	36	15	88705335	88705335	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004309	exon4	c.G1268A	p.R423Q	.	.	.
IQGAP1	8826	broad.mit.edu	36	15	88778004	88778004	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003870	exon5	c.G440T	p.R147I	.	.	.
IQGAP1	8826	broad.mit.edu	36	15	88797016	88797016	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003870	exon12	c.G1168A	p.A390T	.	.	.
IQGAP1	8826	broad.mit.edu	36	15	88836938	88836938	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003870	exon35	c.G4619T	p.S1540I	.	.	.
CRTC3	64784	broad.mit.edu	36	15	88982806	88982806	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022769	exon12	c.C1391T	p.A464V	.	.	.
BLM	641	broad.mit.edu	36	15	89093942	89093942	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000057	exon3	c.C440A	p.S147Y	.	.	.
RCCD1	91433	broad.mit.edu	36	15	89304598	89304598	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033544	exon7	c.G815T	p.R272I	.	.	.
PRC1	9055	broad.mit.edu	36	15	89314661	89314661	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003981	exon12	c.C1549T	p.R517X	.	.	.
SV2B	9899	broad.mit.edu	36	15	89596670	89596670	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014848	exon5	c.G700A	p.E234K	.	.	.
CHD2	1106	broad.mit.edu	36	15	91348891	91348891	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001271	exon34	c.G4319A	p.R1440Q	.	.	.
CHD2	1106	broad.mit.edu	36	15	91364321	91364321	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001271	exon38	c.G4982T	p.R1661M	.	.	.
MCTP2	55784	broad.mit.edu	36	15	92683593	92683593	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001159643	exon4	c.G708T	p.K236N	.	.	.
IGF1R	3480	broad.mit.edu	36	15	97257638	97257638	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000875	exon4	c.C1083A	p.L361L	.	.	.
IGF1R	3480	broad.mit.edu	36	15	97300108	97300108	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000875	exon18	c.C3453T	p.I1151I	.	.	.
PGPEP1L	145814	broad.mit.edu	36	15	97330205	97330205	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102612	exon4	c.G343A	p.D115N	.	.	.
SYNM	23336	broad.mit.edu	36	15	97488843	97488843	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015286	exon4	c.G2754A	p.P918P	.	.	.
SYNM	23336	broad.mit.edu	36	15	97490244	97490244	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145728	exon4	c.G4155T	p.Q1385H	.	.	.
LRRC28	123355	broad.mit.edu	36	15	97743797	97743797	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144598	exon10	c.C1071T	p.T357T	.	.	.
MEF2A	4205	broad.mit.edu	36	15	98048112	98048112	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005587	exon8	c.C820T	p.R274X	.	.	.
LYSMD4	145748	broad.mit.edu	36	15	98087127	98087127	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152449	exon6	c.G618A	p.P206P	.	.	.
ADAMTS17	170691	broad.mit.edu	36	15	98557098	98557098	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139057	exon8	c.G1129A	p.E377K	.	.	.
ADAMTS17	170691	broad.mit.edu	36	15	98611901	98611901	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139057	exon7	c.T1038A	p.D346E	.	.	.
LASS3	204219	broad.mit.edu	36	15	98848581	98848581	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178842	exon5	c.G252T	p.E84D	.	.	.
LINS	55180	broad.mit.edu	36	15	98927844	98927844	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040616	exon7	c.G1396T	p.G466X	.	.	.
LINS	55180	broad.mit.edu	36	15	98931710	98931710	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040616	exon5	c.G891A	p.R297R	.	.	.
ASB7	140460	broad.mit.edu	36	15	98987421	98987421	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024708	exon5	c.C468T	p.L156L	.	.	.
ALDH1A3	220	broad.mit.edu	36	15	99258483	99258483	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000693	exon9	c.C1064T	p.P355L	.	.	.
ALDH1A3	220	broad.mit.edu	36	15	99266206	99266206	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000693	exon12	c.G1462T	p.E488X	.	.	.
LRRK1	79705	broad.mit.edu	36	15	99406299	99406299	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024652	exon22	c.T3213G	p.N1071K	.	.	.
PCSK6	5046	broad.mit.edu	36	15	99751126	99751126	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138322	exon8	c.C1021T	p.R341C	.	.	.
HERC3	8916	broad.mit.edu	36	4	89810059	89810059	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014606	exon15	c.1659delG	p.P553fs	.	.	.
ADH4	127	broad.mit.edu	36	4	100267390	100267390	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000670	exon7	c.C972A	p.F324L	.	.	.
ADH1B	125	broad.mit.edu	36	4	100451789	100451789	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000668	exon7	c.C876T	p.I292I	.	.	.
ADH1B	125	broad.mit.edu	36	4	100454022	100454022	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000668	exon6	c.C807A	p.V269V	.	.	.
ADH1C	126	broad.mit.edu	36	4	100483117	100483117	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000669	exon6	c.A686C	p.K229T	.	.	.
ZNF518B	85460	broad.mit.edu	36	4	10056408	10056408	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_053042	exon3	c.A643G	p.R215G	.	.	.
C4orf17	84103	broad.mit.edu	36	4	100653326	100653326	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032149	exon2	c.G65T	p.R22I	.	.	.
MTTP	4547	broad.mit.edu	36	4	100722107	100722107	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000253	exon3	c.A84G	p.L28L	.	.	.
MTTP	4547	broad.mit.edu	36	4	100737357	100737357	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000253	exon9	c.G1020T	p.K340N	.	.	.
MTTP	4547	broad.mit.edu	36	4	100753129	100753129	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000253	exon16	c.G2026A	p.A676T	.	.	.
DAPP1	27071	broad.mit.edu	36	4	100980480	100980480	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014395	exon3	c.C236A	p.S79Y	.	.	.
CLNK	116449	broad.mit.edu	36	4	10101308	10101308	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052964	exon19	c.G1168A	p.E390K	.	.	.
DNAJB14	79982	broad.mit.edu	36	4	101046735	101046735	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001031723	exon5	c.C694T	p.R232X	.	.	.
DDIT4L	115265	broad.mit.edu	36	4	101327916	101327916	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145244	exon3	c.C523T	p.R175X	.	.	.
CLNK	116449	broad.mit.edu	36	4	10175455	10175455	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052964	exon7	c.G337T	p.D113Y	.	.	.
PPP3CA	5530	broad.mit.edu	36	4	102336183	102336183	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130691	exon2	c.G172T	p.E58X	.	.	.
BANK1	55024	broad.mit.edu	36	4	102970367	102970367	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017935	exon2	c.C450T	p.I150I	.	.	.
BANK1	55024	broad.mit.edu	36	4	103010781	103010781	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017935	exon5	c.A860C	p.E287A	.	.	.
NFKB1	4790	broad.mit.edu	36	4	103678052	103678052	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001165412	exon5	c.C166T	p.R56C	.	.	.
NFKB1	4790	broad.mit.edu	36	4	103733668	103733668	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001165412	exon12	c.C1112T	p.S371L	.	.	.
NFKB1	4790	broad.mit.edu	36	4	103753746	103753746	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001165412	exon23	c.C2708T	p.S903L	.	.	.
MANBA	4126	broad.mit.edu	36	4	103814151	103814151	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005908	exon8	c.C1085A	p.S362X	.	.	.
UBE2D3	7323	broad.mit.edu	36	4	103966781	103966781	+	Intron	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181886	exon2	c.A20G	p.N7S	.	.	.
NHEDC1	150159	broad.mit.edu	36	4	104052129	104052129	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139173	exon8	c.A844C	p.N282H	.	.	.
NHEDC1	150159	broad.mit.edu	36	4	104085829	104085829	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139173	exon6	c.A623C	p.K208T	.	.	.
BDH2	56898	broad.mit.edu	36	4	104222738	104222738	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020139	exon9	c.C633T	p.F211F	.	.	.
CENPE	1062	broad.mit.edu	36	4	104249445	104249445	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001813	exon48	c.C7975T	p.R2659C	.	.	.
CENPE	1062	broad.mit.edu	36	4	104289810	104289810	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001813	exon27	c.G3601T	p.E1201X	.	.	.
CENPE	1062	broad.mit.edu	36	4	104289876	104289876	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001813	exon27	c.A3535G	p.T1179A	.	.	.
CENPE	1062	broad.mit.edu	36	4	104291911	104291911	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001813	exon26	c.G3310T	p.E1104X	.	.	.
CENPE	1062	broad.mit.edu	36	4	104299481	104299481	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001813	exon23	c.G2613T	p.K871N	.	.	.
CENPE	1062	broad.mit.edu	36	4	104321009	104321009	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001813	exon13	c.G1150T	p.D384Y	.	.	.
TACR3	6870	broad.mit.edu	36	4	104730571	104730571	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001059	exon5	c.G1115A	p.R372H	.	.	.
TET2	54790	broad.mit.edu	36	4	106375970	106375970	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017628	exon3	c.G1422A	p.P474P	.	.	.
TET2	54790	broad.mit.edu	36	4	106376892	106376892	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017628	exon3	c.G2344T	p.E782X	.	.	.
TET2	54790	broad.mit.edu	36	4	106377849	106377849	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017628	exon3	c.C3301A	p.L1101I	.	.	.
PPA2	27068	broad.mit.edu	36	4	106511454	106511454	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006903	exon10	c.G878A	p.S293N	.	.	.
PAPSS1	9061	broad.mit.edu	36	4	108834497	108834497	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005443	exon3	c.A290C	p.K97T	.	.	.
SGMS2	166929	broad.mit.edu	36	4	109043988	109043988	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001136257	exon4	c.G724T	p.E242X	.	.	.
SGMS2	166929	broad.mit.edu	36	4	109050966	109050966	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001136257	exon6	c.C906A	p.V302V	.	.	.
SGMS2	166929	broad.mit.edu	36	4	109051053	109051053	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001136257	exon6	c.C993A	p.C331X	.	.	.
SGMS2	166929	broad.mit.edu	36	4	109051149	109051149	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001136257	exon6	c.A1089C	p.K363N	.	.	.
HADH	3033	broad.mit.edu	36	4	109150418	109150418	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184705	exon2	c.C187T	p.L63L	.	.	.
AGXT2L1	64850	broad.mit.edu	36	4	109900448	109900448	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146627	exon2	c.T67C	p.S23P	.	.	.
AGXT2L1	64850	broad.mit.edu	36	4	109900886	109900886	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146590	exon2	c.T82C	p.S28P	.	.	.
HS3ST1	9957	broad.mit.edu	36	4	11009869	11009869	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005114	exon2	c.G859A	p.E287K	.	.	.
COL25A1	84570	broad.mit.edu	36	4	110442489	110442489	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198721	exon2	c.G136A	p.V46M	.	.	.
SEC24B	10427	broad.mit.edu	36	4	110666862	110666862	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006323	exon17	c.C2823A	p.F941L	.	.	.
CASP6	839	broad.mit.edu	36	4	110830078	110830078	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001226	exon7	c.G739T	p.E247X	.	.	.
RRH	10692	broad.mit.edu	36	4	110968640	110968640	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006583	exon1	c.G8T	p.R3I	.	.	.
RRH	10692	broad.mit.edu	36	4	110973912	110973912	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006583	exon2	c.A275C	p.K92T	.	.	.
LRIT3	345193	broad.mit.edu	36	4	111008329	111008329	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198506	exon2	c.C538A	p.L180I	.	.	.
LRIT3	345193	broad.mit.edu	36	4	111010616	111010616	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198506	exon3	c.C1127A	p.S376Y	.	.	.
ENPEP	2028	broad.mit.edu	36	4	111660903	111660903	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001977	exon10	c.G1659T	p.K553N	.	.	.
NEUROG2	63973	broad.mit.edu	36	4	113655613	113655613	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024019	exon2	c.C468T	p.F156F	.	.	.
C4orf21	55345	broad.mit.edu	36	4	113746689	113746689	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018392	exon9	c.C2726A	p.S909Y	.	.	.
ANK2	287	broad.mit.edu	36	4	114415187	114415187	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020977	exon15	c.G1616A	p.R539Q	.	.	.
ANK2	287	broad.mit.edu	36	4	114493967	114493967	+	Missense_Mutation	SNP	C	T	T	rs35249198	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001148	exon38	c.C4744T	p.R1582W	.	.	.
ANK2	287	broad.mit.edu	36	4	114494725	114494725	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001148	exon38	c.C5502A	p.S1834S	.	.	.
ANK2	287	broad.mit.edu	36	4	114510258	114510258	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020977	exon42	c.C5203T	p.R1735W	.	.	.
CAMK2D	817	broad.mit.edu	36	4	114689322	114689322	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172115	exon6	c.G354T	p.Q118H	.	.	.
ARSJ	79642	broad.mit.edu	36	4	115043841	115043841	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024590	exon2	c.G838A	p.E280K	.	.	.
ARSJ	79642	broad.mit.edu	36	4	115043966	115043966	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024590	exon2	c.C713T	p.S238F	.	.	.
UGT8	7368	broad.mit.edu	36	4	115763789	115763789	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001128174	exon2	c.G304A	p.E102K	.	.	.
UGT8	7368	broad.mit.edu	36	4	115816856	115816856	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128174	exon6	c.G1589T	p.R530I	.	.	.
METTL14	57721	broad.mit.edu	36	4	119850684	119850684	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020961	exon11	c.T1150C	p.Y384H	.	.	.
MYOZ2	51778	broad.mit.edu	36	4	120304864	120304864	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016599	exon5	c.G427A	p.A143T	.	.	.
USP53	54532	broad.mit.edu	36	4	120385968	120385968	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019050	exon5	c.G173A	p.R58Q	.	.	.
FABP2	2169	broad.mit.edu	36	4	120460183	120460183	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000134	exon3	c.G304A	p.E102K	.	.	.
PDE5A	8654	broad.mit.edu	36	4	120646525	120646525	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033437	exon17	c.G2044T	p.E682X	.	.	.
PDE5A	8654	broad.mit.edu	36	4	120648266	120648266	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033437	exon16	c.G1974T	p.K658N	.	.	.
PDE5A	8654	broad.mit.edu	36	4	120683177	120683177	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033437	exon10	c.G1301A	p.R434Q	.	.	.
PRDM5	11107	broad.mit.edu	36	4	121917874	121917874	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018699	exon13	c.G1456T	p.E486X	.	.	.
C4orf31	79625	broad.mit.edu	36	4	122178058	122178058	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024574	exon4	c.A518G	p.Y173C	.	.	.
C4orf31	79625	broad.mit.edu	36	4	122186275	122186275	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024574	exon2	c.C168A	p.L56L	.	.	.
TNIP3	79931	broad.mit.edu	36	4	122299309	122299309	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128843	exon5	c.G196T	p.E66X	.	.	.
QRFPR	84109	broad.mit.edu	36	4	122473455	122473455	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198179	exon4	c.T768G	p.I256M	.	.	.
QRFPR	84109	broad.mit.edu	36	4	122477432	122477432	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198179	exon3	c.T541C	p.W181R	.	.	.
BBS7	55212	broad.mit.edu	36	4	122966480	122966480	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176824	exon19	c.C2133A	p.F711L	.	.	.
BBS7	55212	broad.mit.edu	36	4	122968790	122968790	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176824	exon18	c.G1975T	p.E659X	.	.	.
BBS7	55212	broad.mit.edu	36	4	122975773	122975773	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176824	exon14	c.G1487T	p.R496I	.	.	.
BBS7	55212	broad.mit.edu	36	4	122989468	122989468	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_176824	exon9	c.C915T	p.I305I	.	.	.
TRPC3	7222	broad.mit.edu	36	4	123023010	123023010	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003305	exon10	c.C2353T	p.R785W	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123337852	123337852	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015312	exon11	c.A1261C	p.N421H	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123349933	123349933	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015312	exon16	c.C1922A	p.T641N	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123351634	123351634	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015312	exon18	c.G2181T	p.M727I	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123367386	123367386	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015312	exon22	c.G2868A	p.P956P	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123387813	123387813	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015312	exon33	c.A5363C	p.N1788T	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123390133	123390133	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015312	exon34	c.C5556A	p.S1852S	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123395423	123395423	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015312	exon37	c.T6088G	p.L2030V	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123412257	123412257	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015312	exon45	c.C8128T	p.L2710F	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123468962	123468962	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015312	exon64	c.C11249T	p.S3750L	.	.	.
IL2	3558	broad.mit.edu	36	4	123594388	123594388	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000586	exon3	c.C278T	p.A93V	.	.	.
BBS12	166379	broad.mit.edu	36	4	123883022	123883022	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001178007	exon3	c.T525C	p.G175G	.	.	.
SPATA5	166378	broad.mit.edu	36	4	124197855	124197855	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145207	exon13	c.C2175A	p.F725L	.	.	.
SPRY1	10252	broad.mit.edu	36	4	124542369	124542369	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005841	exon2	c.C173T	p.S58L	.	.	.
SPRY1	10252	broad.mit.edu	36	4	124542958	124542958	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005841	exon2	c.C762T	p.C254C	.	.	.
ANKRD50	57182	broad.mit.edu	36	4	125809603	125809603	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001167882	exon3	c.A3742G	p.T1248A	.	.	.
FAT4	79633	broad.mit.edu	36	4	126458261	126458261	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024582	exon1	c.G1245A	p.P415P	.	.	.
FAT4	79633	broad.mit.edu	36	4	126459037	126459037	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024582	exon1	c.G2021A	p.R674H	.	.	.
FAT4	79633	broad.mit.edu	36	4	126460344	126460344	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024582	exon1	c.G3328A	p.E1110K	.	.	.
FAT4	79633	broad.mit.edu	36	4	126556208	126556208	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024582	exon5	c.G6640A	p.A2214T	.	.	.
FAT4	79633	broad.mit.edu	36	4	126575030	126575030	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024582	exon7	c.G7199T	p.R2400M	.	.	.
FAT4	79633	broad.mit.edu	36	4	126586964	126586964	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024582	exon8	c.C7260T	p.S2420S	.	.	.
FAT4	79633	broad.mit.edu	36	4	126589245	126589245	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024582	exon9	c.G7624T	p.D2542Y	.	.	.
FAT4	79633	broad.mit.edu	36	4	126590981	126590981	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024582	exon9	c.G9360T	p.M3120I	.	.	.
FAT4	79633	broad.mit.edu	36	4	126609235	126609235	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024582	exon11	c.A12018C	p.K4006N	.	.	.
FAT4	79633	broad.mit.edu	36	4	126627980	126627980	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024582	exon16	c.G12847A	p.D4283N	.	.	.
INTU	27152	broad.mit.edu	36	4	128854546	128854546	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015693	exon15	c.G2565T	p.K855N	.	.	.
SLC25A31	83447	broad.mit.edu	36	4	128871266	128871266	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031291	exon1	c.C116T	p.A39V	.	.	.
SLC25A31	83447	broad.mit.edu	36	4	128909390	128909390	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031291	exon5	c.C667A	p.L223I	.	.	.
HSPA4L	22824	broad.mit.edu	36	4	128923196	128923196	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014278	exon1	c.A41G	p.Y14C	.	.	.
HSPA4L	22824	broad.mit.edu	36	4	128939275	128939275	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014278	exon4	c.A390G	p.E130E	.	.	.
PLK4	10733	broad.mit.edu	36	4	129022498	129022498	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190799	exon2	c.C93A	p.S31S	.	.	.
PLK4	10733	broad.mit.edu	36	4	129032990	129032990	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190801	exon10	c.C1936A	p.Q646K	.	.	.
PLK4	10733	broad.mit.edu	36	4	129035611	129035611	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190801	exon14	c.C2493A	p.I831I	.	.	.
C4orf29	80167	broad.mit.edu	36	4	129171221	129171221	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039717	exon11	c.C1185T	p.I395I	.	.	.
LARP1B	55132	broad.mit.edu	36	4	129218486	129218486	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178043	exon4	c.G136T	p.E46X	.	.	.
LARP1B	55132	broad.mit.edu	36	4	129247782	129247782	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178043	exon9	c.G852T	p.E284D	.	.	.
LARP1B	55132	broad.mit.edu	36	4	129341158	129341158	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018078	exon17	c.G2197T	p.E733X	.	.	.
PHF17	79960	broad.mit.edu	36	4	129983588	129983588	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199320	exon3	c.G83A	p.R28Q	.	.	.
RAB28	9364	broad.mit.edu	36	4	13071506	13071506	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001017979	exon4	c.G306T	p.E102D	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13210304	13210304	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_148894	exon10	c.G7318A	p.E2440K	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13211656	13211656	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_148894	exon10	c.G5966A	p.S1989N	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13213600	13213600	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_148894	exon10	c.G4022T	p.S1341I	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13213835	13213835	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_148894	exon10	c.G3787T	p.E1263X	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13214904	13214904	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_148894	exon10	c.G2718T	p.E906D	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13215560	13215560	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_148894	exon10	c.G2062A	p.E688K	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13215683	13215683	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_148894	exon10	c.G1939T	p.E647X	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13221801	13221801	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_148894	exon6	c.A1346T	p.N449I	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134292601	134292601	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032961	exon1	c.G1856T	p.S619I	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138661861	138661861	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019035	exon4	c.G3180A	p.T1060T	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138670242	138670242	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019035	exon1	c.C2451A	p.F817L	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138672168	138672168	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019035	exon1	c.G525A	p.S175S	.	.	.
SLC7A11	23657	broad.mit.edu	36	4	139319869	139319869	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014331	exon11	c.C1396A	p.L466I	.	.	.
ELF2	1998	broad.mit.edu	36	4	140201206	140201206	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006874	exon6	c.G699A	p.P233P	.	.	.
ELF2	1998	broad.mit.edu	36	4	140212542	140212542	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006874	exon3	c.G274T	p.E92X	.	.	.
RAB33B	83452	broad.mit.edu	36	4	140613420	140613420	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031296	exon2	c.C380A	p.S127Y	.	.	.
SETD7	80854	broad.mit.edu	36	4	140673897	140673897	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030648	exon3	c.C244A	p.L82I	.	.	.
CLGN	1047	broad.mit.edu	36	4	141529854	141529854	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004362	exon15	c.C1807T	p.R603C	.	.	.
TBC1D9	23158	broad.mit.edu	36	4	141774671	141774671	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015130	exon16	c.C2627T	p.A876V	.	.	.
RNF150	57484	broad.mit.edu	36	4	142108255	142108255	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020724	exon2	c.G707A	p.R236Q	.	.	.
ZNF330	27309	broad.mit.edu	36	4	142367437	142367437	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014487	exon5	c.G278A	p.G93D	.	.	.
INPP4B	8821	broad.mit.edu	36	4	143378554	143378554	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003866	exon13	c.G749A	p.R250Q	.	.	.
INPP4B	8821	broad.mit.edu	36	4	143401133	143401133	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003866	exon12	c.G650T	p.S217I	.	.	.
SMARCA5	8467	broad.mit.edu	36	4	144665050	144665050	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003601	exon4	c.G500A	p.R167Q	.	.	.
SMARCA5	8467	broad.mit.edu	36	4	144675483	144675483	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003601	exon10	c.G1184A	p.R395Q	.	.	.
SMARCA5	8467	broad.mit.edu	36	4	144687401	144687401	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003601	exon20	c.G2543T	p.R848I	.	.	.
SMARCA5	8467	broad.mit.edu	36	4	144687493	144687493	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003601	exon20	c.G2635T	p.E879X	.	.	.
GYPB	2994	broad.mit.edu	36	4	145141813	145141813	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002100	exon2	c.G111T	p.K37N	.	.	.
HHIP	64399	broad.mit.edu	36	4	145793211	145793211	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022475	exon2	c.T284G	p.F95C	.	.	.
MMAA	166785	broad.mit.edu	36	4	146783034	146783034	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172250	exon3	c.G509T	p.R170I	.	.	.
MMAA	166785	broad.mit.edu	36	4	146791713	146791713	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172250	exon5	c.T783G	p.V261V	.	.	.
MMAA	166785	broad.mit.edu	36	4	146795755	146795755	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172250	exon7	c.C976T	p.R326C	.	.	.
ZNF827	152485	broad.mit.edu	36	4	147026461	147026461	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178835	exon4	c.G1566T	p.V522V	.	.	.
TTC29	83894	broad.mit.edu	36	4	147960794	147960794	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031956	exon10	c.G1034T	p.R345I	.	.	.
TTC29	83894	broad.mit.edu	36	4	148049807	148049807	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031956	exon5	c.G221A	p.R74Q	.	.	.
TMEM184C	55751	broad.mit.edu	36	4	148765426	148765426	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018241	exon4	c.G313A	p.G105R	.	.	.
ARHGAP10	79658	broad.mit.edu	36	4	149007333	149007333	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024605	exon7	c.G618A	p.G206G	.	.	.
ARHGAP10	79658	broad.mit.edu	36	4	149015723	149015723	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024605	exon8	c.C804T	p.A268A	.	.	.
NR3C2	4306	broad.mit.edu	36	4	149400708	149400708	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166104	exon3	c.G1769A	p.R590Q	.	.	.
CC2D2A	57545	broad.mit.edu	36	4	15127369	15127369	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080522	exon12	c.C1041T	p.D347D	.	.	.
DCLK2	166614	broad.mit.edu	36	4	151373293	151373293	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040260	exon10	c.C1429A	p.L477I	.	.	.
DCLK2	166614	broad.mit.edu	36	4	151380372	151380372	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040260	exon11	c.C1595A	p.S532Y	.	.	.
LRBA	987	broad.mit.edu	36	4	151608279	151608279	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006726	exon45	c.C6809T	p.S2270F	.	.	.
LRBA	987	broad.mit.edu	36	4	151628396	151628396	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006726	exon43	c.G6522T	p.K2174N	.	.	.
LRBA	987	broad.mit.edu	36	4	151631568	151631568	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006726	exon42	c.C6433T	p.R2145C	.	.	.
LRBA	987	broad.mit.edu	36	4	151992852	151992852	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006726	exon23	c.T3460G	p.L1154V	.	.	.
LRBA	987	broad.mit.edu	36	4	151993544	151993544	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006726	exon23	c.T2768C	p.V923A	.	.	.
LRBA	987	broad.mit.edu	36	4	152049432	152049432	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006726	exon10	c.G1189A	p.D397N	.	.	.
PRSS48	345062	broad.mit.edu	36	4	152420427	152420427	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_183375	exon2	c.G82A	p.V28I	.	.	.
PRSS48	345062	broad.mit.edu	36	4	152422949	152422949	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_183375	exon3	c.A415G	p.T139A	.	.	.
FBXL5	26234	broad.mit.edu	36	4	15247253	15247253	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012161	exon5	c.C728T	p.S243L	.	.	.
PET112L	5188	broad.mit.edu	36	4	152901414	152901414	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004564	exon1	c.G171T	p.R57S	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153463635	153463635	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018315	exon11	c.C1732T	p.R578X	FBXW7,endometrium,NS,Substitution - Nonsense,0	.	.
FBXW7	55294	broad.mit.edu	36	4	153487543	153487543	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018315	exon3	c.A475C	p.K159Q	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153490692	153490692	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018315	exon2	c.G296A	p.R99H	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153493321	153493321	+	Intron	SNP	C	T	T	rs34496200	by-frequency	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018315	exon1	c.G12A	p.P4P	.	.	.
TIGD4	201798	broad.mit.edu	36	4	153910462	153910462	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145720	exon2	c.C1145A	p.S382Y	.	.	.
TIGD4	201798	broad.mit.edu	36	4	153911321	153911321	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145720	exon2	c.C286T	p.R96X	.	.	.
TIGD4	201798	broad.mit.edu	36	4	153911525	153911525	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145720	exon2	c.G82A	p.D28N	.	.	.
FHDC1	85462	broad.mit.edu	36	4	154083990	154083990	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033393	exon1	c.C331T	p.R111X	.	.	.
FHDC1	85462	broad.mit.edu	36	4	154113082	154113082	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033393	exon10	c.A1322C	p.K441T	.	.	.
TRIM2	23321	broad.mit.edu	36	4	154436216	154436216	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015271	exon6	c.G1088A	p.R363Q	.	.	.
CD38	952	broad.mit.edu	36	4	15448877	15448877	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001775	exon5	c.A650G	p.D217G	.	.	.
CD38	952	broad.mit.edu	36	4	15459320	15459320	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001775	exon8	c.C900A	p.I300I	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154734456	154734456	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015196	exon19	c.G1975A	p.E659K	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154742879	154742879	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015196	exon22	c.G2389A	p.E797K	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154752996	154752996	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015196	exon26	c.C3558T	p.F1186F	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154774860	154774860	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015196	exon33	c.C4392T	p.N1464N	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154777126	154777126	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015196	exon35	c.G4778A	p.R1593K	.	.	.
TLR2	7097	broad.mit.edu	36	4	154844356	154844356	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003264	exon3	c.G847T	p.E283X	.	.	.
TLR2	7097	broad.mit.edu	36	4	154844759	154844759	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003264	exon3	c.A1250G	p.N417S	.	.	.
TLR2	7097	broad.mit.edu	36	4	154845591	154845591	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003264	exon3	c.A2082C	p.E694D	.	.	.
RNF175	285533	broad.mit.edu	36	4	154856153	154856153	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173662	exon7	c.T742G	p.Y248D	.	.	.
SFRP2	6423	broad.mit.edu	36	4	154929339	154929339	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003013	exon1	c.C99A	p.F33L	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155375542	155375542	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017639	exon25	c.C8347A	p.L2783I	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155375907	155375907	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017639	exon25	c.G7982T	p.R2661I	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155376132	155376132	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017639	exon25	c.G7757T	p.R2586I	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155438837	155438837	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017639	exon18	c.T4714C	p.Y1572H	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155439278	155439278	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017639	exon18	c.G4273T	p.E1425X	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155497871	155497871	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017639	exon6	c.G750T	p.K250N	.	.	.
PLRG1	5356	broad.mit.edu	36	4	155677290	155677290	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002669	exon15	c.T1542G	p.F514L	.	.	.
PLRG1	5356	broad.mit.edu	36	4	155678678	155678678	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002669	exon13	c.T1184C	p.I395T	.	.	.
PLRG1	5356	broad.mit.edu	36	4	155681398	155681398	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002669	exon9	c.G826A	p.E276K	.	.	.
FGB	2244	broad.mit.edu	36	4	155708299	155708299	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005141	exon4	c.C595T	p.R199C	.	.	.
FGA	2243	broad.mit.edu	36	4	155726575	155726575	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021871	exon5	c.G1456A	p.E486K	.	.	.
RBM46	166863	broad.mit.edu	36	4	155938533	155938533	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144979	exon3	c.G272A	p.R91Q	.	.	.
RBM46	166863	broad.mit.edu	36	4	155939578	155939578	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144979	exon4	c.G814T	p.D272Y	.	.	.
PROM1	8842	broad.mit.edu	36	4	15619720	15619720	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145849	exon11	c.A1251C	p.E417D	.	.	.
NPY2R	4887	broad.mit.edu	36	4	156355480	156355480	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000910	exon2	c.C939T	p.I313I	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156837654	156837654	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130682	exon3	c.G185T	p.R62I	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156851619	156851619	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130682	exon6	c.G852T	p.K284N	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156851731	156851731	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130682	exon6	c.G964T	p.E322X	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156853829	156853829	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130682	exon7	c.C1216T	p.H406Y	.	.	.
GUCY1B3	2983	broad.mit.edu	36	4	156934535	156934535	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000857	exon6	c.T573G	p.F191L	.	.	.
ACCN5	51802	broad.mit.edu	36	4	156977320	156977320	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017419	exon8	c.G1206T	p.K402N	.	.	.
ACCN5	51802	broad.mit.edu	36	4	157004322	157004322	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017419	exon2	c.G75T	p.K25N	.	.	.
TDO2	6999	broad.mit.edu	36	4	157044687	157044687	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005651	exon2	c.G103A	p.A35T	.	.	.
TDO2	6999	broad.mit.edu	36	4	157050687	157050687	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005651	exon6	c.G492T	p.K164N	.	.	.
CTSO	1519	broad.mit.edu	36	4	157070144	157070144	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001334	exon6	c.G838A	p.G280R	.	.	.
CTSO	1519	broad.mit.edu	36	4	157083847	157083847	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001334	exon2	c.G155A	p.R52Q	.	.	.
PDGFC	56034	broad.mit.edu	36	4	157913340	157913340	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016205	exon4	c.G651A	p.R217R	.	.	.
PDGFC	56034	broad.mit.edu	36	4	157990994	157990994	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016205	exon2	c.G143A	p.R48K	.	.	.
GRIA2	2891	broad.mit.edu	36	4	158362333	158362333	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001083620	exon2	c.T12G	p.F4L	.	.	.
GRIA2	2891	broad.mit.edu	36	4	158476472	158476472	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001083620	exon10	c.T1325C	p.V442A	.	.	.
TMEM144	55314	broad.mit.edu	36	4	159384943	159384943	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018342	exon12	c.G946T	p.E316X	.	.	.
RXFP1	59350	broad.mit.edu	36	4	159752952	159752952	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021634	exon8	c.C668A	p.S223Y	.	.	.
RXFP1	59350	broad.mit.edu	36	4	159769282	159769282	+	Silent	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021634	exon11	c.T870A	p.T290T	.	.	.
RXFP1	59350	broad.mit.edu	36	4	159787475	159787475	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021634	exon16	c.G1428A	p.A476A	.	.	.
C4orf45	152940	broad.mit.edu	36	4	160055867	160055867	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152543	exon4	c.A451C	p.N151H	.	.	.
RAPGEF2	9693	broad.mit.edu	36	4	160445050	160445050	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014247	exon2	c.G167T	p.S56I	.	.	.
RAPGEF2	9693	broad.mit.edu	36	4	160471059	160471059	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014247	exon7	c.A943C	p.K315Q	.	.	.
RAPGEF2	9693	broad.mit.edu	36	4	160473259	160473259	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014247	exon11	c.G1612A	p.D538N	.	.	.
RAPGEF2	9693	broad.mit.edu	36	4	160493377	160493377	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014247	exon21	c.C3473T	p.S1158L	.	.	.
FSTL5	56884	broad.mit.edu	36	4	162527038	162527038	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020116	exon16	c.C1855A	p.L619I	.	.	.
FSTL5	56884	broad.mit.edu	36	4	162796978	162796978	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020116	exon7	c.G846A	p.W282X	.	.	.
FSTL5	56884	broad.mit.edu	36	4	162797079	162797079	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020116	exon7	c.C745T	p.L249L	.	.	.
LDB2	9079	broad.mit.edu	36	4	16369885	16369885	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130834	exon2	c.C229T	p.R77X	.	.	.
NAF1	92345	broad.mit.edu	36	4	164289018	164289018	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138386	exon3	c.G559T	p.E187X	.	.	.
NPY5R	4889	broad.mit.edu	36	4	164491275	164491275	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006174	exon4	c.T400A	p.S134T	.	.	.
TKTL2	84076	broad.mit.edu	36	4	164613788	164613788	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032136	exon1	c.C549T	p.F183F	.	.	.
MARCH1	55016	broad.mit.edu	36	4	164669541	164669541	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017923	exon4	c.C628T	p.R210C	.	.	.
TRIM60	166655	broad.mit.edu	36	4	166181645	166181645	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152620	exon3	c.G971A	p.R324Q	.	.	.
TRIM60	166655	broad.mit.edu	36	4	166182030	166182030	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152620	exon3	c.C1356A	p.F452L	.	.	.
KLHL2	11275	broad.mit.edu	36	4	166360651	166360651	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001161521	exon2	c.G154A	p.E52K	.	.	.
SC4MOL	6307	broad.mit.edu	36	4	166474161	166474161	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006745	exon2	c.C189A	p.F63L	.	.	.
CPE	1363	broad.mit.edu	36	4	166625134	166625134	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001873	exon5	c.C901T	p.R301C	.	.	.
TLL1	7092	broad.mit.edu	36	4	167148612	167148612	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012464	exon7	c.C879T	p.F293F	.	.	.
TLL1	7092	broad.mit.edu	36	4	167179960	167179960	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012464	exon10	c.C1178T	p.T393M	.	.	.
SPOCK3	50859	broad.mit.edu	36	4	167892793	167892793	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016950	exon12	c.G1165T	p.D389Y	.	.	.
SPOCK3	50859	broad.mit.edu	36	4	168070358	168070358	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016950	exon6	c.C471A	p.T157T	.	.	.
DDX60	55601	broad.mit.edu	36	4	169395061	169395061	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017631	exon32	c.T4362C	p.S1454S	.	.	.
DDX60	55601	broad.mit.edu	36	4	169408805	169408805	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017631	exon28	c.A3733C	p.K1245Q	.	.	.
DDX60	55601	broad.mit.edu	36	4	169413479	169413479	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017631	exon26	c.A3515C	p.K1172T	.	.	.
DDX60	55601	broad.mit.edu	36	4	169438072	169438072	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017631	exon14	c.G1967A	p.R656Q	.	.	.
DDX60	55601	broad.mit.edu	36	4	169464257	169464257	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017631	exon5	c.G454A	p.D152N	.	.	.
DDX60L	91351	broad.mit.edu	36	4	169531500	169531500	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012967	exon35	c.C4668T	p.L1556L	.	.	.
DDX60L	91351	broad.mit.edu	36	4	169537500	169537500	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012967	exon31	c.G4173A	p.E1391E	.	.	.
DDX60L	91351	broad.mit.edu	36	4	169553690	169553690	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012967	exon27	c.G3652T	p.D1218Y	.	.	.
DDX60L	91351	broad.mit.edu	36	4	169573400	169573400	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012967	exon21	c.C2852A	p.S951X	.	.	.
DDX60L	91351	broad.mit.edu	36	4	169577067	169577067	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012967	exon19	c.A2571C	p.Q857H	.	.	.
PALLD	23022	broad.mit.edu	36	4	169869577	169869577	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016081	exon10	c.A1892C	p.K631T	.	.	.
PALLD	23022	broad.mit.edu	36	4	170048748	170048748	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016081	exon11	c.C2065T	p.R689C	.	.	.
SH3RF1	57630	broad.mit.edu	36	4	170275450	170275450	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020870	exon9	c.C1576T	p.R526W	.	.	.
CLCN3	1182	broad.mit.edu	36	4	170875545	170875545	+	Missense_Mutation	SNP	G	T	T	rs34564682	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173872	exon13	c.G2394T	p.K798N	.	.	.
MFAP3L	9848	broad.mit.edu	36	4	171149107	171149107	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021647	exon3	c.C1227A	p.V409V	.	.	.
CLRN2	645104	broad.mit.edu	36	4	17137801	17137801	+	Nonstop_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001079827	exon3	c.T697G	p.X233E	.	.	.
LAP3	51056	broad.mit.edu	36	4	17209248	17209248	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015907	exon10	c.G1149A	p.P383P	.	.	.
LAP3	51056	broad.mit.edu	36	4	17218287	17218287	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015907	exon13	c.C1537T	p.R513C	.	.	.
GALNT7	51809	broad.mit.edu	36	4	174475372	174475372	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017423	exon10	c.G1621A	p.E541K	.	.	.
SAP30	8819	broad.mit.edu	36	4	174531168	174531168	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003864	exon2	c.G368A	p.R123Q	.	.	.
KIAA1712	80817	broad.mit.edu	36	4	175467655	175467655	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040157	exon8	c.C758T	p.S253L	.	.	.
GPM6A	2823	broad.mit.edu	36	4	176970364	176970364	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201591	exon1	c.G9T	p.E3D	.	.	.
WDR17	116966	broad.mit.edu	36	4	177286903	177286903	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181265	exon6	c.C811T	p.R271C	.	.	.
WDR17	116966	broad.mit.edu	36	4	177330603	177330603	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181265	exon24	c.T3186G	p.Y1062X	.	.	.
WDR17	116966	broad.mit.edu	36	4	177335219	177335219	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181265	exon27	c.C3466T	p.R1156W	.	.	.
WDR17	116966	broad.mit.edu	36	4	177335280	177335280	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181265	exon27	c.C3527T	p.A1176V	.	.	.
SPATA4	132851	broad.mit.edu	36	4	177342934	177342934	+	Missense_Mutation	SNP	C	A	A	rs73005175	by-1000genomes	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144644	exon6	c.G909T	p.K303N	.	.	.
SPATA4	132851	broad.mit.edu	36	4	177351148	177351148	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144644	exon3	c.C422T	p.P141L	.	.	.
ASB5	140458	broad.mit.edu	36	4	177375086	177375086	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080874	exon6	c.G739A	p.E247K	.	.	.
SPCS3	60559	broad.mit.edu	36	4	177485406	177485406	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021928	exon4	c.G394A	p.D132N	.	.	.
VEGFC	7424	broad.mit.edu	36	4	177845996	177845996	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005429	exon5	c.T784G	p.F262V	.	.	.
NEIL3	55247	broad.mit.edu	36	4	178493947	178493947	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018248	exon3	c.C390A	p.F130L	.	.	.
AGA	175	broad.mit.edu	36	4	178596946	178596946	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171988	exon4	c.C454A	p.Q152K	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183505044	183505044	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080477	exon2	c.C479T	p.T160M	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183831196	183831196	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080477	exon6	c.G1156A	p.G386R	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183901504	183901504	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080477	exon18	c.C3567T	p.G1189G	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183912637	183912637	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080477	exon21	c.C4123T	p.R1375C	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183947487	183947487	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080477	exon24	c.C5552T	p.S1851F	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183950462	183950462	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080477	exon25	c.C5643T	p.F1881F	.	.	.
WWC2	80014	broad.mit.edu	36	4	184444120	184444120	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024949	exon20	c.C3055T	p.R1019W	.	.	.
WWC2	80014	broad.mit.edu	36	4	184470550	184470550	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024949	exon22	c.C3447A	p.V1149V	.	.	.
ING2	3622	broad.mit.edu	36	4	184668458	184668458	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001564	exon2	c.G202A	p.E68K	.	.	.
ENPP6	133121	broad.mit.edu	36	4	185255478	185255478	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153343	exon7	c.G1031A	p.G344D	.	.	.
CASP3	836	broad.mit.edu	36	4	185789968	185789968	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032991	exon5	c.T428C	p.F143S	.	.	.
CCDC111	201973	broad.mit.edu	36	4	185819929	185819929	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152683	exon5	c.C286A	p.L96I	.	.	.
MLF1IP	79682	broad.mit.edu	36	4	185853493	185853493	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024629	exon13	c.C1200T	p.A400A	.	.	.
SNX25	83891	broad.mit.edu	36	4	186478884	186478884	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031953	exon8	c.C856A	p.L286I	.	.	.
ANKRD37	353322	broad.mit.edu	36	4	186557754	186557754	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181726	exon4	c.C309T	p.L103L	.	.	.
SORBS2	8470	broad.mit.edu	36	4	186785021	186785021	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145672	exon13	c.C1145A	p.S382Y	.	.	.
SORBS2	8470	broad.mit.edu	36	4	186804884	186804884	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145672	exon10	c.C823T	p.R275W	.	.	.
TLR3	7098	broad.mit.edu	36	4	187241170	187241170	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003265	exon4	c.G1336T	p.E446X	.	.	.
TLR3	7098	broad.mit.edu	36	4	187242905	187242905	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003265	exon5	c.C2599T	p.R867X	.	.	.
FAM149A	25854	broad.mit.edu	36	4	187323603	187323603	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001006655	exon10	c.C1155T	p.R385R	.	.	.
CYP4V2	285440	broad.mit.edu	36	4	187355738	187355738	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207352	exon5	c.G662A	p.R221H	.	.	.
CYP4V2	285440	broad.mit.edu	36	4	187357124	187357124	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207352	exon6	c.C694T	p.R232X	.	.	.
KLKB1	3818	broad.mit.edu	36	4	187392152	187392152	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000892	exon4	c.C274T	p.R92X	.	.	.
KLKB1	3818	broad.mit.edu	36	4	187409746	187409746	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000892	exon9	c.G980A	p.R327H	.	.	.
FAT1	2195	broad.mit.edu	36	4	187755080	187755080	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005245	exon25	c.G12608A	p.R4203H	.	.	.
FAT1	2195	broad.mit.edu	36	4	187755144	187755144	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005245	exon25	c.G12544T	p.G4182X	.	.	.
FAT1	2195	broad.mit.edu	36	4	187776049	187776049	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005245	exon10	c.G8685T	p.K2895N	.	.	.
FAT1	2195	broad.mit.edu	36	4	187776774	187776774	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005245	exon10	c.G7960A	p.V2654I	.	.	.
FAT1	2195	broad.mit.edu	36	4	187779021	187779021	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005245	exon10	c.G5713T	p.D1905Y	.	.	.
FAT1	2195	broad.mit.edu	36	4	187779145	187779145	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005245	exon10	c.G5589A	p.A1863A	.	.	.
FAT1	2195	broad.mit.edu	36	4	187865901	187865901	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005245	exon2	c.A2075C	p.K692T	.	.	.
FAT1	2195	broad.mit.edu	36	4	187867132	187867132	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005245	exon2	c.G844A	p.D282N	.	.	.
TRIML2	205860	broad.mit.edu	36	4	189249773	189249773	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173553	exon7	c.C912A	p.V304V	.	.	.
TRIML2	205860	broad.mit.edu	36	4	189259314	189259314	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173553	exon3	c.C220A	p.L74I	.	.	.
TRIML1	339976	broad.mit.edu	36	4	189300619	189300619	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178556	exon3	c.G724A	p.E242K	.	.	.
FRG2	448831	broad.mit.edu	36	4	191185276	191185276	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199232	exon1	c.G78T	p.Q26H	.	.	.
WHSC1	7468	broad.mit.edu	36	4	1922651	1922651	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133331	exon11	c.G1936A	p.E646K	.	.	.
SLIT2	9353	broad.mit.edu	36	4	20179597	20179597	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004787	exon29	c.C2960T	p.A987V	.	.	.
SLIT2	9353	broad.mit.edu	36	4	20220876	20220876	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004787	exon34	c.C3835A	p.L1279I	.	.	.
POLN	353497	broad.mit.edu	36	4	2179793	2179793	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181808	exon3	c.A433C	p.N145H	.	.	.
GPR125	166647	broad.mit.edu	36	4	22024060	22024060	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145290	exon14	c.G2075A	p.R692Q	.	.	.
GPR125	166647	broad.mit.edu	36	4	22072521	22072521	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145290	exon3	c.G338A	p.R113Q	.	.	.
HAUS3	79441	broad.mit.edu	36	4	2210259	2210259	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024511	exon3	c.A1219C	p.N407H	.	.	.
HAUS3	79441	broad.mit.edu	36	4	2212282	2212282	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024511	exon2	c.C190A	p.L64I	.	.	.
DHX15	1665	broad.mit.edu	36	4	24143768	24143768	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001358	exon12	c.A1917C	p.E639D	.	.	.
DHX15	1665	broad.mit.edu	36	4	24165516	24165516	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001358	exon5	c.G1010A	p.R337Q	.	.	.
LGI2	55203	broad.mit.edu	36	4	24623134	24623134	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018176	exon7	c.G741A	p.A247A	.	.	.
LGI2	55203	broad.mit.edu	36	4	24628877	24628877	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018176	exon6	c.G487T	p.D163Y	.	.	.
SEPSECS	51091	broad.mit.edu	36	4	24734763	24734763	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016955	exon11	c.G1394A	p.R465Q	.	.	.
SEPSECS	51091	broad.mit.edu	36	4	24737989	24737989	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016955	exon9	c.C1115A	p.S372Y	.	.	.
SEPSECS	51091	broad.mit.edu	36	4	24765767	24765767	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016955	exon5	c.C652A	p.L218M	.	.	.
PI4K2B	55300	broad.mit.edu	36	4	24863150	24863150	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018323	exon2	c.C378T	p.I126I	.	.	.
ZCCHC4	29063	broad.mit.edu	36	4	24924852	24924852	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024936	exon2	c.G214T	p.D72Y	.	.	.
ANAPC4	29945	broad.mit.edu	36	4	25013731	25013731	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013367	exon17	c.C1255T	p.R419W	.	.	.
ANAPC4	29945	broad.mit.edu	36	4	25025214	25025214	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013367	exon24	c.T1714A	p.F572I	.	.	.
ANAPC4	29945	broad.mit.edu	36	4	25027258	25027258	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013367	exon27	c.C2015A	p.S672Y	.	.	.
SEL1L3	23231	broad.mit.edu	36	4	25399037	25399037	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015187	exon13	c.G2124T	p.K708N	.	.	.
RBPJ	3516	broad.mit.edu	36	4	26031365	26031365	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203284	exon6	c.A413G	p.D138G	.	.	.
RBPJ	3516	broad.mit.edu	36	4	26035423	26035423	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203284	exon8	c.A704C	p.K235T	.	.	.
CCKAR	886	broad.mit.edu	36	4	26096410	26096410	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000730	exon3	c.G573T	p.Q191H	.	.	.
FAM193A	8603	broad.mit.edu	36	4	2618348	2618348	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003704	exon5	c.C429T	p.V143V	.	.	.
STIM2	57620	broad.mit.edu	36	4	26568359	26568359	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001169117	exon3	c.G310T	p.D104Y	.	.	.
STIM2	57620	broad.mit.edu	36	4	26618277	26618277	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001169117	exon8	c.G1006A	p.E336K	.	.	.
STIM2	57620	broad.mit.edu	36	4	26628656	26628656	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001169117	exon11	c.G1715A	p.R572Q	.	.	.
SH3BP2	6452	broad.mit.edu	36	4	2804533	2804533	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145856	exon12	c.G1678A	p.E560K	.	.	.
MFSD10	10227	broad.mit.edu	36	4	2904138	2904138	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001120	exon4	c.G518A	p.R173H	.	.	.
NOP14	8602	broad.mit.edu	36	4	2915666	2915666	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003703	exon13	c.T1823G	p.F608C	.	.	.
NOP14	8602	broad.mit.edu	36	4	2922758	2922758	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003703	exon7	c.C883T	p.R295X	.	.	.
PCDH7	5099	broad.mit.edu	36	4	30333420	30333420	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032456	exon1	c.G1278T	p.K426N	.	.	.
HTT	3064	broad.mit.edu	36	4	3058471	3058471	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002111	exon2	c.G271T	p.E91X	.	.	.
HTT	3064	broad.mit.edu	36	4	3146536	3146536	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002111	exon33	c.G4311A	p.T1437T	.	.	.
HTT	3064	broad.mit.edu	36	4	3152069	3152069	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002111	exon36	c.G4642A	p.D1548N	.	.	.
ZNF141	7700	broad.mit.edu	36	4	357454	357454	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003441	exon4	c.C1228T	p.R410W	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35797702	35797702	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015230	exon24	c.G3928T	p.E1310X	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35891323	35891323	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015230	exon4	c.G978T	p.E326D	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35907468	35907468	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015230	exon2	c.A36T	p.K12N	.	.	.
RELL1	768211	broad.mit.edu	36	4	37325393	37325393	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001085400	exon3	c.A377C	p.K126T	.	.	.
RELL1	768211	broad.mit.edu	36	4	37327318	37327318	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001085400	exon2	c.C288T	p.I96I	.	.	.
TLR10	81793	broad.mit.edu	36	4	38451402	38451402	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030956	exon4	c.C2205A	p.F735L	.	.	.
TLR10	81793	broad.mit.edu	36	4	38451711	38451711	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030956	exon4	c.C1896T	p.V632V	.	.	.
TLR10	81793	broad.mit.edu	36	4	38453342	38453342	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030956	exon4	c.C265T	p.L89F	.	.	.
TLR10	81793	broad.mit.edu	36	4	38453593	38453593	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030956	exon4	c.G14T	p.R5I	.	.	.
TLR1	7096	broad.mit.edu	36	4	38474909	38474909	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003263	exon4	c.G1939A	p.D647N	.	.	.
TLR1	7096	broad.mit.edu	36	4	38475412	38475412	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003263	exon4	c.C1436A	p.S479Y	.	.	.
TLR1	7096	broad.mit.edu	36	4	38476103	38476103	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003263	exon4	c.C745A	p.L249I	.	.	.
FAM114A1	92689	broad.mit.edu	36	4	38556314	38556314	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138389	exon3	c.G220A	p.D74N	.	.	.
FAM114A1	92689	broad.mit.edu	36	4	38610335	38610335	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138389	exon12	c.C1408A	p.L470I	.	.	.
KLHL5	51088	broad.mit.edu	36	4	38740873	38740873	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015990	exon1	c.G344A	p.R115Q	.	.	.
KLHL5	51088	broad.mit.edu	36	4	38754047	38754047	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015990	exon2	c.T589C	p.F197L	.	.	.
KLHL5	51088	broad.mit.edu	36	4	38764702	38764702	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015990	exon5	c.A1211C	p.K404T	.	.	.
WDR19	57728	broad.mit.edu	36	4	38932029	38932029	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025132	exon26	c.C2985A	p.I995I	.	.	.
RFC1	5981	broad.mit.edu	36	4	38967948	38967948	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002913	exon24	c.C3275T	p.S1092L	.	.	.
RFC1	5981	broad.mit.edu	36	4	38980758	38980758	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002913	exon17	c.G2334T	p.Q778H	.	.	.
RFC1	5981	broad.mit.edu	36	4	38987042	38987042	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002913	exon13	c.G1494T	p.K498N	.	.	.
RFC1	5981	broad.mit.edu	36	4	38998639	38998639	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002913	exon9	c.G854T	p.R285M	.	.	.
RPL9	6133	broad.mit.edu	36	4	39136247	39136247	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000661	exon3	c.A124G	p.N42D	.	.	.
LIAS	11019	broad.mit.edu	36	4	39138901	39138901	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194451	exon2	c.T142G	p.F48V	.	.	.
PDS5A	23244	broad.mit.edu	36	4	39544934	39544934	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100399	exon23	c.C2584T	p.R862W	.	.	.
PDS5A	23244	broad.mit.edu	36	4	39600713	39600713	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100399	exon6	c.C578A	p.S193Y	.	.	.
N4BP2	55728	broad.mit.edu	36	4	39799265	39799265	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018177	exon9	c.G3139T	p.D1047Y	.	.	.
N4BP2	55728	broad.mit.edu	36	4	39799462	39799462	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018177	exon9	c.G3336T	p.E1112D	.	.	.
CHRNA9	55584	broad.mit.edu	36	4	40033991	40033991	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017581	exon3	c.G218T	p.R73I	.	.	.
CHRNA9	55584	broad.mit.edu	36	4	40051276	40051276	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017581	exon5	c.C1422A	p.I474I	.	.	.
RBM47	54502	broad.mit.edu	36	4	40135188	40135188	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019027	exon3	c.G480A	p.K160K	.	.	.
UCHL1	7345	broad.mit.edu	36	4	40964824	40964824	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004181	exon9	c.G649A	p.V217M	.	.	.
LIMCH1	22998	broad.mit.edu	36	4	41302698	41302698	+	5'UTR	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001112717	exon6	c.G406A	p.A136T	.	.	.
LIMCH1	22998	broad.mit.edu	36	4	41343378	41343378	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001112720	exon6	c.G878A	p.R293H	.	.	.
LIMCH1	22998	broad.mit.edu	36	4	41343642	41343642	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001112720	exon6	c.C1142A	p.S381Y	.	.	.
LIMCH1	22998	broad.mit.edu	36	4	41359688	41359688	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001112720	exon9	c.C1568T	p.S523L	.	.	.
PHOX2B	8929	broad.mit.edu	36	4	41445179	41445179	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003924	exon1	c.C206A	p.T69N	.	.	.
SLC30A9	10463	broad.mit.edu	36	4	41714902	41714902	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006345	exon3	c.G292T	p.E98X	.	.	.
SLC30A9	10463	broad.mit.edu	36	4	41775043	41775043	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006345	exon17	c.G1606T	p.E536X	.	.	.
BEND4	389206	broad.mit.edu	36	4	41840521	41840521	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001159547	exon3	c.T735G	p.F245L	.	.	.
BEND4	389206	broad.mit.edu	36	4	41840715	41840715	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001159547	exon3	c.C541A	p.L181I	.	.	.
ATP8A1	10396	broad.mit.edu	36	4	42140433	42140433	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006095	exon33	c.C3029T	p.A1010V	.	.	.
ATP8A1	10396	broad.mit.edu	36	4	42240731	42240731	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006095	exon20	c.G1682A	p.R561H	.	.	.
ATP8A1	10396	broad.mit.edu	36	4	42245821	42245821	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006095	exon19	c.A1618C	p.R540R	.	.	.
ATP8A1	10396	broad.mit.edu	36	4	42247992	42247992	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006095	exon18	c.G1582A	p.D528N	.	.	.
ATP8A1	10396	broad.mit.edu	36	4	42276625	42276625	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006095	exon11	c.G962A	p.R321Q	.	.	.
ATP8A1	10396	broad.mit.edu	36	4	42278478	42278478	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006095	exon10	c.C751A	p.L251I	.	.	.
OTOP1	133060	broad.mit.edu	36	4	4250442	4250442	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_177998	exon5	c.G1020T	p.K340N	.	.	.
OTOP1	133060	broad.mit.edu	36	4	4250586	4250586	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_177998	exon5	c.C876T	p.I292I	.	.	.
ZNF721	170960	broad.mit.edu	36	4	425686	425686	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133474	exon3	c.G2570T	p.R857I	.	.	.
ZNF721	170960	broad.mit.edu	36	4	426441	426441	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133474	exon3	c.A1815C	p.K605N	.	.	.
ZNF721	170960	broad.mit.edu	36	4	426526	426526	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133474	exon3	c.G1730T	p.R577I	.	.	.
GRXCR1	389207	broad.mit.edu	36	4	42727276	42727276	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080476	exon4	c.G835T	p.E279X	.	.	.
ZNF721	170960	broad.mit.edu	36	4	427366	427366	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133474	exon3	c.G890T	p.R297I	.	.	.
ZNF721	170960	broad.mit.edu	36	4	427785	427785	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133474	exon3	c.A471C	p.K157N	.	.	.
LYAR	55646	broad.mit.edu	36	4	4332096	4332096	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145725	exon6	c.C408A	p.I136I	.	.	.
GUF1	60558	broad.mit.edu	36	4	44383307	44383307	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021927	exon8	c.C758A	p.P253H	.	.	.
STX18	53407	broad.mit.edu	36	4	4477832	4477832	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016930	exon8	c.C721T	p.R241X	.	.	.
GABRA2	2555	broad.mit.edu	36	4	45947288	45947288	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000807	exon10	c.C1150A	p.L384I	.	.	.
GABRA2	2555	broad.mit.edu	36	4	45958840	45958840	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000807	exon9	c.G919T	p.V307L	.	.	.
GABRA2	2555	broad.mit.edu	36	4	46029394	46029394	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000807	exon4	c.G250T	p.D84Y	.	.	.
GABRA4	2557	broad.mit.edu	36	4	46625285	46625285	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000809	exon9	c.G1379A	p.R460Q	.	.	.
GABRA4	2557	broad.mit.edu	36	4	46689638	46689638	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000809	exon2	c.G169A	p.D57N	.	.	.
GABRB1	2560	broad.mit.edu	36	4	46858163	46858163	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000812	exon4	c.G381T	p.K127N	.	.	.
COMMD8	54951	broad.mit.edu	36	4	47153499	47153499	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017845	exon3	c.T227G	p.F76C	.	.	.
ATP10D	57205	broad.mit.edu	36	4	47254842	47254842	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020453	exon12	c.T2229G	p.T743T	.	.	.
CORIN	10699	broad.mit.edu	36	4	47376978	47376978	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006587	exon8	c.G1069A	p.A357T	.	.	.
CNGA1	1259	broad.mit.edu	36	4	47633972	47633972	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000087	exon11	c.G1296T	p.K432N	.	.	.
CNGA1	1259	broad.mit.edu	36	4	47648203	47648203	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000087	exon5	c.G160T	p.E54X	.	.	.
TXK	7294	broad.mit.edu	36	4	47807335	47807335	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003328	exon5	c.A423C	p.K141N	.	.	.
ZAR1	326340	broad.mit.edu	36	4	48189750	48189750	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175619	exon3	c.T1095G	p.S365S	.	.	.
FRYL	285527	broad.mit.edu	36	4	48196841	48196841	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015030	exon63	c.G8746T	p.E2916X	.	.	.
FRYL	285527	broad.mit.edu	36	4	48207643	48207643	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015030	exon58	c.C8261T	p.S2754L	.	.	.
FRYL	285527	broad.mit.edu	36	4	48224785	48224785	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015030	exon52	c.C7100A	p.S2367Y	.	.	.
FRYL	285527	broad.mit.edu	36	4	48253886	48253886	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015030	exon35	c.G4132A	p.D1378N	.	.	.
FRYL	285527	broad.mit.edu	36	4	48292428	48292428	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015030	exon15	c.G1184A	p.R395Q	.	.	.
FRYL	285527	broad.mit.edu	36	4	48331095	48331095	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015030	exon4	c.G90T	p.K30N	.	.	.
OCIAD1	54940	broad.mit.edu	36	4	48548753	48548753	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001079841	exon7	c.G551T	p.R184I	.	.	.
CWH43	80157	broad.mit.edu	36	4	48747570	48747570	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025087	exon15	c.G1968T	p.Q656H	.	.	.
PIGG	54872	broad.mit.edu	36	4	514241	514241	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017733	exon11	c.C2254T	p.R752C	.	.	.
PIGG	54872	broad.mit.edu	36	4	523025	523025	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017733	exon13	c.C2795A	p.S932Y	.	.	.
LRRC66	339977	broad.mit.edu	36	4	52556864	52556864	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001024611	exon4	c.G1081A	p.D361N	.	.	.
LRRC66	339977	broad.mit.edu	36	4	52578447	52578447	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001024611	exon1	c.T90G	p.I30M	.	.	.
SGCB	6443	broad.mit.edu	36	4	52584904	52584904	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000232	exon6	c.C933G	p.D311E	.	.	.
SPATA18	132671	broad.mit.edu	36	4	52612633	52612633	+	Silent	SNP	G	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145263	exon1	c.G6C	p.A2A	.	.	.
SPATA18	132671	broad.mit.edu	36	4	52633033	52633033	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145263	exon6	c.G712A	p.E238K	.	.	.
SCFD2	152579	broad.mit.edu	36	4	53446690	53446690	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152540	exon8	c.C1943T	p.S648L	.	.	.
SCFD2	152579	broad.mit.edu	36	4	53481723	53481723	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152540	exon6	c.C1633T	p.R545W	.	.	.
FIP1L1	81608	broad.mit.edu	36	4	54013981	54013981	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030917	exon16	c.C1423T	p.R475W	.	.	.
LNX1	84708	broad.mit.edu	36	4	54039564	54039564	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001126328	exon8	c.G1588T	p.E530X	.	.	.
LNX1	84708	broad.mit.edu	36	4	54059620	54059620	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001126328	exon5	c.G923A	p.R308H	.	.	.
LNX1	84708	broad.mit.edu	36	4	54059702	54059702	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001126328	exon5	c.G841T	p.D281Y	.	.	.
LNX1	84708	broad.mit.edu	36	4	54068918	54068918	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001126328	exon3	c.G614A	p.R205Q	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54828318	54828318	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006206	exon6	c.G865A	p.E289K	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54838403	54838403	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006206	exon13	c.G1878T	p.V626V	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54841393	54841393	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006206	exon16	c.G2310T	p.K770N	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54849771	54849771	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006206	exon20	c.A2723C	p.K908T	.	.	.
KIT	3815	broad.mit.edu	36	4	55256589	55256589	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000222	exon2	c.G222A	p.T74T	.	.	.
KIT	3815	broad.mit.edu	36	4	55264661	55264661	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000222	exon5	c.G771T	p.E257D	.	.	.
KIT	3815	broad.mit.edu	36	4	55297435	55297435	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000222	exon18	c.G2499T	p.V833V	.	.	.
KIT	3815	broad.mit.edu	36	4	55299386	55299386	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000222	exon21	c.G2837A	p.R946Q	.	.	.
KDR	3791	broad.mit.edu	36	4	55650358	55650358	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002253	exon25	c.T3344G	p.F1115C	.	.	.
CLOCK	9575	broad.mit.edu	36	4	55999433	55999433	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004898	exon22	c.A2134G	p.K712E	.	.	.
CLOCK	9575	broad.mit.edu	36	4	56020083	56020083	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004898	exon10	c.C662A	p.S221Y	.	.	.
EXOC1	55763	broad.mit.edu	36	4	56425218	56425218	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001024924	exon4	c.G324T	p.K108N	.	.	.
CEP135	9662	broad.mit.edu	36	4	56515256	56515256	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025009	exon4	c.G422T	p.R141I	.	.	.
CEP135	9662	broad.mit.edu	36	4	56572897	56572897	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025009	exon21	c.G2791T	p.E931X	.	.	.
EVC2	132884	broad.mit.edu	36	4	5681189	5681189	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166136	exon12	c.G1644T	p.E548D	.	.	.
KIAA1211	57482	broad.mit.edu	36	4	56868472	56868472	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020722	exon5	c.G135T	p.K45N	.	.	.
AASDH	132949	broad.mit.edu	36	4	56899426	56899426	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181806	exon15	c.G3196A	p.E1066K	.	.	.
PPAT	5471	broad.mit.edu	36	4	56967450	56967450	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002703	exon3	c.G370A	p.E124K	.	.	.
PPAT	5471	broad.mit.edu	36	4	56968598	56968598	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002703	exon2	c.C170T	p.S57L	.	.	.
PAICS	10606	broad.mit.edu	36	4	57012915	57012915	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001079524	exon7	c.C892T	p.R298X	.	.	.
SRP72	6731	broad.mit.edu	36	4	57037596	57037596	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006947	exon6	c.C613A	p.L205I	.	.	.
HOPX	84525	broad.mit.edu	36	4	57209655	57209655	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032495	exon4	c.C264T	p.S88S	.	.	.
SPINK2	6691	broad.mit.edu	36	4	57371078	57371078	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021114	exon4	c.G239A	p.R80Q	.	.	.
REST	5978	broad.mit.edu	36	4	57491383	57491383	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001193508	exon4	c.G1602T	p.V534V	.	.	.
REST	5978	broad.mit.edu	36	4	57492668	57492668	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193508	exon4	c.A2887C	p.N963H	.	.	.
POLR2B	5431	broad.mit.edu	36	4	57576447	57576447	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000938	exon14	c.G1823A	p.R608Q	.	.	.
POLR2B	5431	broad.mit.edu	36	4	57578631	57578631	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000938	exon16	c.G2303A	p.R768Q	.	.	.
CRMP1	1400	broad.mit.edu	36	4	5902034	5902034	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001313	exon6	c.G607T	p.D203Y	.	.	.
JAKMIP1	152789	broad.mit.edu	36	4	6117519	6117519	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144720	exon9	c.G1420T	p.D474Y	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62281462	62281462	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015236	exon5	c.G790A	p.D264N	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62528016	62528016	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015236	exon15	c.G2742T	p.K914N	.	.	.
TECRL	253017	broad.mit.edu	36	4	64957573	64957573	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010874	exon1	c.G92T	p.R31I	.	.	.
EPHA5	2044	broad.mit.edu	36	4	65884317	65884317	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004439	exon16	c.A2780G	p.E927G	.	.	.
EPHA5	2044	broad.mit.edu	36	4	66150142	66150142	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004439	exon3	c.C722T	p.A241V	.	.	.
EPHA5	2044	broad.mit.edu	36	4	66150302	66150302	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004439	exon3	c.C562A	p.L188I	.	.	.
TMPRSS11D	9407	broad.mit.edu	36	4	68375822	68375822	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004262	exon8	c.C704A	p.P235H	.	.	.
TMPRSS11D	9407	broad.mit.edu	36	4	68407973	68407973	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004262	exon2	c.G27A	p.S9S	.	.	.
TMPRSS11A	339967	broad.mit.edu	36	4	68467384	68467384	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182606	exon8	c.C863T	p.S288L	.	.	.
TMPRSS11F	389208	broad.mit.edu	36	4	68638871	68638871	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207407	exon3	c.G247T	p.E83X	.	.	.
TMPRSS11F	389208	broad.mit.edu	36	4	68638941	68638941	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207407	exon3	c.C177T	p.F59F	.	.	.
TMPRSS11B	132724	broad.mit.edu	36	4	68777681	68777681	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182502	exon8	c.G835T	p.E279X	.	.	.
TMPRSS11B	132724	broad.mit.edu	36	4	68790075	68790075	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182502	exon2	c.G51A	p.T17T	.	.	.
YTHDC1	91746	broad.mit.edu	36	4	68885423	68885423	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031732	exon4	c.G800A	p.R267Q	.	.	.
UGT2B17	7367	broad.mit.edu	36	4	69086208	69086208	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077	exon6	c.G1323T	p.E441D	.	.	.
UGT2B17	7367	broad.mit.edu	36	4	69116704	69116704	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077	exon1	c.G94T	p.E32X	.	.	.
KIAA0232	9778	broad.mit.edu	36	4	6915136	6915136	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014743	exon7	c.G2126T	p.R709I	.	.	.
KIAA0232	9778	broad.mit.edu	36	4	6915228	6915228	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014743	exon7	c.G2218A	p.E740K	.	.	.
KIAA0232	9778	broad.mit.edu	36	4	6915566	6915566	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014743	exon7	c.G2556A	p.S852S	.	.	.
UGT2A3	79799	broad.mit.edu	36	4	69830222	69830222	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024743	exon6	c.C1482A	p.F494L	.	.	.
UGT2B11	10720	broad.mit.edu	36	4	70104927	70104927	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001073	exon5	c.C1120A	p.H374N	.	.	.
UGT2B11	10720	broad.mit.edu	36	4	70114628	70114628	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001073	exon1	c.G402T	p.K134N	.	.	.
UGT2B28	54490	broad.mit.edu	36	4	70181209	70181209	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_053039	exon1	c.G402T	p.K134N	.	.	.
SULT1B1	27284	broad.mit.edu	36	4	70630961	70630961	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014465	exon7	c.A625C	p.I209L	.	.	.
SULT1E1	6783	broad.mit.edu	36	4	70754594	70754594	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005420	exon4	c.C299A	p.S100Y	.	.	.
CSN2	1447	broad.mit.edu	36	4	70857928	70857928	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001891	exon5	c.A328G	p.T110A	.	.	.
CCDC96	257236	broad.mit.edu	36	4	7094166	7094166	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153376	exon1	c.C1401T	p.I467I	.	.	.
CSN3	1448	broad.mit.edu	36	4	71149663	71149663	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005212	exon4	c.A447G	p.E149E	.	.	.
AMTN	401138	broad.mit.edu	36	4	71431358	71431358	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_212557	exon8	c.C371T	p.T124M	.	.	.
ENAM	10117	broad.mit.edu	36	4	71727999	71727999	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031889	exon9	c.C1992A	p.V664V	.	.	.
ENAM	10117	broad.mit.edu	36	4	71728115	71728115	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031889	exon9	c.C2108T	p.S703F	.	.	.
IGJ	3512	broad.mit.edu	36	4	71746679	71746679	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144646	exon2	c.G182A	p.R61Q	.	.	.
GRSF1	2926	broad.mit.edu	36	4	71912580	71912580	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098477	exon6	c.C502T	p.R168X	.	.	.
DCK	1633	broad.mit.edu	36	4	72113939	72113939	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000788	exon7	c.G763T	p.E255X	.	.	.
SLC4A4	8671	broad.mit.edu	36	4	72423975	72423975	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134742	exon4	c.G278A	p.R93Q	.	.	.
SLC4A4	8671	broad.mit.edu	36	4	72535800	72535800	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134742	exon11	c.C1240A	p.Q414K	.	.	.
SLC4A4	8671	broad.mit.edu	36	4	72631023	72631023	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001134742	exon19	c.G2535A	p.T845T	.	.	.
SLC4A4	8671	broad.mit.edu	36	4	72652427	72652427	+	3'UTR	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001134742	exon25	c.G3238T	p.D1080Y	.	.	.
GC	2638	broad.mit.edu	36	4	72850054	72850054	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000583	exon4	c.C432A	p.I144I	.	.	.
NPFFR2	10886	broad.mit.edu	36	4	73116658	73116658	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004885	exon1	c.G176A	p.R59H	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73380342	73380342	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014243	exon19	c.C2616A	p.C872X	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73382892	73382892	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014243	exon18	c.G2556T	p.K852N	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73390639	73390639	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014243	exon16	c.A2189C	p.K730T	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73395664	73395664	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014243	exon14	c.G2020T	p.D674Y	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73403932	73403932	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014243	exon9	c.G1333T	p.E445X	.	.	.
COX18	285521	broad.mit.edu	36	4	74142836	74142836	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173827	exon6	c.C861T	p.F287F	.	.	.
COX18	285521	broad.mit.edu	36	4	74149979	74149979	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173827	exon3	c.G450T	p.K150N	.	.	.
ANKRD17	26057	broad.mit.edu	36	4	74203273	74203273	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198889	exon21	c.G3431T	p.R1144I	.	.	.
ANKRD17	26057	broad.mit.edu	36	4	74224262	74224262	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032217	exon15	c.G2935T	p.E979X	.	.	.
ANKRD17	26057	broad.mit.edu	36	4	74231900	74231900	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198889	exon9	c.G1681A	p.E561K	.	.	.
SORCS2	57537	broad.mit.edu	36	4	7448933	7448933	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020777	exon2	c.G498A	p.T166T	.	.	.
ALB	213	broad.mit.edu	36	4	74494032	74494032	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000477	exon5	c.C579T	p.C193C	.	.	.
AFM	173	broad.mit.edu	36	4	74568543	74568543	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001133	exon2	c.A110C	p.K37T	.	.	.
AFM	173	broad.mit.edu	36	4	74570547	74570547	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001133	exon4	c.C375A	p.F125L	.	.	.
AFM	173	broad.mit.edu	36	4	74573289	74573289	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001133	exon7	c.C792A	p.S264S	.	.	.
AFM	173	broad.mit.edu	36	4	74583793	74583793	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001133	exon11	c.C1388T	p.T463M	.	.	.
IL8	3576	broad.mit.edu	36	4	74827036	74827036	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000584	exon4	c.G291T	p.E97D	.	.	.
CXCL5	6374	broad.mit.edu	36	4	75082870	75082870	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002994	exon2	c.G159T	p.Q53H	.	.	.
G3BP2	9908	broad.mit.edu	36	4	76789642	76789642	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203504	exon11	c.G1346A	p.R449H	.	.	.
G3BP2	9908	broad.mit.edu	36	4	76791318	76791318	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203504	exon9	c.C877T	p.R293C	.	.	.
USO1	8615	broad.mit.edu	36	4	76940957	76940957	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003715	exon14	c.G1694A	p.S565N	.	.	.
PPEF2	5470	broad.mit.edu	36	4	77007502	77007502	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006239	exon14	c.G1744A	p.A582T	.	.	.
CXCL9	4283	broad.mit.edu	36	4	77143813	77143813	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002416	exon4	c.C340T	p.R114X	.	.	.
CXCL10	3627	broad.mit.edu	36	4	77162546	77162546	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001565	exon3	c.A275T	p.E92V	.	.	.
CXCL11	6373	broad.mit.edu	36	4	77175414	77175414	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005409	exon2	c.A167G	p.N56S	.	.	.
NUP54	53371	broad.mit.edu	36	4	77255593	77255593	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017426	exon12	c.G1474A	p.E492K	.	.	.
NUP54	53371	broad.mit.edu	36	4	77264917	77264917	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017426	exon9	c.T1073G	p.I358S	.	.	.
SCARB2	950	broad.mit.edu	36	4	77301897	77301897	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005506	exon12	c.G1430A	p.R477Q	.	.	.
CCDC158	339965	broad.mit.edu	36	4	77507764	77507764	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042784	exon11	c.G1537A	p.E513K	.	.	.
SORCS2	57537	broad.mit.edu	36	4	7767937	7767937	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020777	exon17	c.G2251T	p.G751W	.	.	.
ANKRD56	345079	broad.mit.edu	36	4	78036880	78036880	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001029870	exon1	c.C1147T	p.R383C	.	.	.
CCNI	10983	broad.mit.edu	36	4	78195449	78195449	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006835	exon6	c.G568A	p.A190T	.	.	.
CCNI	10983	broad.mit.edu	36	4	78196278	78196278	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006835	exon5	c.G320T	p.R107I	.	.	.
MRPL1	65008	broad.mit.edu	36	4	79023484	79023484	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020236	exon3	c.G208T	p.E70X	.	.	.
MRPL1	65008	broad.mit.edu	36	4	79023599	79023599	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020236	exon3	c.A323C	p.K108T	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79504156	79504156	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025074	exon22	c.C2646T	p.L882L	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79586987	79586987	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025074	exon43	c.C5939A	p.S1980Y	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79606409	79606409	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025074	exon50	c.C7053T	p.I2351I	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79648965	79648965	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025074	exon63	c.G9561T	p.K3187N	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79661757	79661757	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025074	exon68	c.C10597T	p.R3533X	.	.	.
BMP2K	55589	broad.mit.edu	36	4	79991110	79991110	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198892	exon7	c.A759G	p.G253G	.	.	.
BMP2K	55589	broad.mit.edu	36	4	80001599	80001599	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198892	exon9	c.G1020A	p.P340P	.	.	.
BMP2K	55589	broad.mit.edu	36	4	80052167	80052167	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198892	exon16	c.G3442A	p.E1148K	.	.	.
PAQR3	152559	broad.mit.edu	36	4	80060746	80060746	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040202	exon6	c.C907T	p.P303S	.	.	.
NAA11	84779	broad.mit.edu	36	4	80465439	80465439	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032693	exon1	c.G617A	p.S206N	.	.	.
GK2	2712	broad.mit.edu	36	4	80547342	80547342	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033214	exon1	c.A1037C	p.E346A	.	.	.
FGF5	2250	broad.mit.edu	36	4	81407213	81407213	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033143	exon1	c.G211T	p.G71X	.	.	.
C4orf22	255119	broad.mit.edu	36	4	82010212	82010212	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152770	exon4	c.G375T	p.E125D	.	.	.
BMP3	651	broad.mit.edu	36	4	82186338	82186338	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001201	exon2	c.G739T	p.A247S	.	.	.
PRKG2	5593	broad.mit.edu	36	4	82307387	82307387	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006259	exon5	c.G864T	p.K288N	.	.	.
PRKG2	5593	broad.mit.edu	36	4	82311971	82311971	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006259	exon3	c.G640T	p.E214X	.	.	.
RASGEF1B	153020	broad.mit.edu	36	4	82585996	82585996	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152545	exon7	c.G750T	p.K250N	.	.	.
HTRA3	94031	broad.mit.edu	36	4	8356889	8356889	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_053044	exon8	c.G1179A	p.P393P	.	.	.
ENOPH1	58478	broad.mit.edu	36	4	83588194	83588194	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021204	exon2	c.A182C	p.K61T	.	.	.
SCD5	79966	broad.mit.edu	36	4	83821078	83821078	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037582	exon3	c.C375T	p.F125F	.	.	.
SEC31A	22872	broad.mit.edu	36	4	83982330	83982330	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001077207	exon22	c.G2955A	p.A985A	.	.	.
THAP9	79725	broad.mit.edu	36	4	84045092	84045092	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024672	exon2	c.C260A	p.S87Y	.	.	.
THAP9	79725	broad.mit.edu	36	4	84046514	84046514	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024672	exon3	c.T290C	p.V97A	.	.	.
LIN54	132660	broad.mit.edu	36	4	84079874	84079874	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001115008	exon7	c.A619C	p.T207P	.	.	.
COPS4	51138	broad.mit.edu	36	4	84190100	84190100	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016129	exon4	c.G349T	p.E117X	.	.	.
PLAC8	51316	broad.mit.edu	36	4	84234899	84234899	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130715	exon4	c.G313T	p.D105Y	.	.	.
COQ2	27235	broad.mit.edu	36	4	84404501	84404501	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015697	exon7	c.A1141G	p.N381D	.	.	.
HELQ	113510	broad.mit.edu	36	4	84561808	84561808	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133636	exon15	c.C2881T	p.R961X	.	.	.
MRPS18C	51023	broad.mit.edu	36	4	84601173	84601173	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016067	exon5	c.G316T	p.E106X	.	.	.
AGPAT9	84803	broad.mit.edu	36	4	84735034	84735034	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032717	exon7	c.C751A	p.H251N	.	.	.
NKX6-1	4825	broad.mit.edu	36	4	85635985	85635985	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006168	exon2	c.G707T	p.R236I	.	.	.
CDS1	1040	broad.mit.edu	36	4	85788761	85788761	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001263	exon13	c.G1284A	p.Q428Q	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85877412	85877412	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014991	exon41	c.G6706A	p.A2236T	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85880572	85880572	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014991	exon39	c.T6256G	p.L2086V	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85915146	85915146	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014991	exon29	c.G4605T	p.K1535N	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85960276	85960276	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014991	exon12	c.C1679A	p.S560X	.	.	.
ARHGAP24	83478	broad.mit.edu	36	4	87112291	87112291	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031305	exon3	c.G399A	p.A133A	.	.	.
MAPK10	5602	broad.mit.edu	36	4	87169419	87169419	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138981	exon8	c.G772T	p.E258X	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87885299	87885299	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080684	exon17	c.G2644T	p.D882Y	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87890656	87890656	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080683	exon18	c.C2660T	p.S887L	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87893233	87893233	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080683	exon20	c.A3214C	p.K1072Q	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87902950	87902950	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080684	exon21	c.G3027T	p.M1009I	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87903120	87903120	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080684	exon21	c.C3197A	p.S1066Y	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87903226	87903226	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080684	exon21	c.G3303T	p.E1101D	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87908132	87908132	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080684	exon25	c.G3895T	p.D1299Y	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87926088	87926088	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080684	exon37	c.C5747A	p.S1916X	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87944017	87944017	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080684	exon40	c.C6064A	p.P2022T	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87947822	87947822	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080684	exon42	c.C6258T	p.F2086F	.	.	.
SLC10A6	345274	broad.mit.edu	36	4	87989138	87989138	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_197965	exon1	c.C155A	p.S52Y	.	.	.
AFF1	4299	broad.mit.edu	36	4	88266401	88266401	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166693	exon14	c.C2700T	p.G900G	.	.	.
SPARCL1	8404	broad.mit.edu	36	4	88634131	88634131	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128310	exon5	c.C845T	p.S282L	.	.	.
DSPP	1834	broad.mit.edu	36	4	88752614	88752614	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014208	exon4	c.G252T	p.K84N	.	.	.
DMP1	1758	broad.mit.edu	36	4	88802935	88802935	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001079911	exon5	c.G933A	p.Q311Q	.	.	.
MEPE	56955	broad.mit.edu	36	4	88985474	88985474	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001184697	exon6	c.G91A	p.A31T	.	.	.
PKD2	5311	broad.mit.edu	36	4	89208219	89208219	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000297	exon13	c.C2504A	p.S835Y	.	.	.
ABCG2	9429	broad.mit.edu	36	4	89261932	89261932	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004827	exon6	c.G568T	p.E190X	ABCG2,central_nervous_system,brain,Substitution - Missense,0	.	.
ABCG2	9429	broad.mit.edu	36	4	89272752	89272752	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004827	exon3	c.C263T	p.S88L	.	.	.
HERC6	55008	broad.mit.edu	36	4	89553290	89553290	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017912	exon12	c.T1406C	p.F469S	.	.	.
HERC5	51191	broad.mit.edu	36	4	89619550	89619550	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016323	exon13	c.G1606T	p.E536X	.	.	.
HERC5	51191	broad.mit.edu	36	4	89626342	89626342	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016323	exon14	c.C1791A	p.L597L	.	.	.
HERC5	51191	broad.mit.edu	36	4	89627288	89627288	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016323	exon15	c.C1897T	p.P633S	.	.	.
HERC3	8916	broad.mit.edu	36	4	89794218	89794218	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014606	exon7	c.C688T	p.R230X	.	.	.
FAM13A	10144	broad.mit.edu	36	4	89908196	89908196	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014883	exon12	c.G1496T	p.R499I	.	.	.
FAM13A	10144	broad.mit.edu	36	4	89991194	89991194	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014883	exon7	c.G1007T	p.S336I	.	.	.
FAM13A	10144	broad.mit.edu	36	4	90046582	90046582	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014883	exon6	c.G814T	p.D272Y	.	.	.
GPRIN3	285513	broad.mit.edu	36	4	90388788	90388788	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198281	exon2	c.G1497A	p.T499T	.	.	.
MMRN1	22915	broad.mit.edu	36	4	91035627	91035627	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007351	exon1	c.G482A	p.G161D	.	.	.
MMRN1	22915	broad.mit.edu	36	4	91068050	91068050	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007351	exon5	c.C1037T	p.S346F	.	.	.
MMRN1	22915	broad.mit.edu	36	4	91076066	91076066	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007351	exon6	c.G2212T	p.A738S	.	.	.
MMRN1	22915	broad.mit.edu	36	4	91076583	91076583	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007351	exon6	c.C2729A	p.S910Y	.	.	.
FAM190A	401145	broad.mit.edu	36	4	91448858	91448858	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145065	exon2	c.G400A	p.D134N	.	.	.
TMSL3	7117	broad.mit.edu	36	4	91979146	91979146	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_183049	exon1	c.G66A	p.E22E	.	.	.
GRID2	2895	broad.mit.edu	36	4	93730349	93730349	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001510	exon2	c.C133T	p.R45C	.	.	.
DRD5	1816	broad.mit.edu	36	4	9393592	9393592	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000798	exon1	c.G841A	p.D281N	.	.	.
DRD5	1816	broad.mit.edu	36	4	9394000	9394000	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000798	exon1	c.G1249A	p.A417T	.	.	.
DRD5	1816	broad.mit.edu	36	4	9394170	9394170	+	Silent	SNP	G	A	A	rs1064139	by-frequency	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000798	exon1	c.G1419A	p.P473P	.	.	.
GRID2	2895	broad.mit.edu	36	4	94225422	94225422	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001510	exon3	c.G498A	p.Q166Q	.	.	.
SLC2A9	56606	broad.mit.edu	36	4	9437267	9437267	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001290	exon13	c.C1388T	p.A463V	.	.	.
GRID2	2895	broad.mit.edu	36	4	94766466	94766466	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001510	exon14	c.C2217T	p.F739F	.	.	.
SMARCAD1	56916	broad.mit.edu	36	4	95423410	95423410	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128429	exon22	c.G2848T	p.D950Y	.	.	.
PDLIM5	10611	broad.mit.edu	36	4	95716019	95716019	+	Intron	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006457	exon5	c.T521C	p.F174S	.	.	.
SLC2A9	56606	broad.mit.edu	36	4	9632127	9632127	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020041	exon1	c.T25C	p.S9P	.	.	.
PDHA2	5161	broad.mit.edu	36	4	96980876	96980876	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005390	exon1	c.C552T	p.N184N	.	.	.
PDHA2	5161	broad.mit.edu	36	4	96981450	96981450	+	Missense_Mutation	SNP	C	T	T	rs17024795	by-cluster,by-frequency,by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005390	exon1	c.C1126T	p.R376C	.	.	.
C4orf37	285555	broad.mit.edu	36	4	98981016	98981016	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_174952	exon9	c.G1135A	p.A379T	.	.	.
RAP1GDS1	5910	broad.mit.edu	36	4	99560309	99560309	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100428	exon10	c.G1147T	p.D383Y	.	.	.
WWC3	55841	broad.mit.edu	36	X	10007833	10007833	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015691	exon5	c.G366T	p.E122D	.	.	.
DRP2	1821	broad.mit.edu	36	X	100390169	100390169	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001939	exon14	c.G1465A	p.G489R	.	.	.
BTK	695	broad.mit.edu	36	X	100494946	100494946	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000061	exon18	c.A1800G	p.R600R	.	.	.
BTK	695	broad.mit.edu	36	X	100499154	100499154	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000061	exon13	c.C1176T	p.Y392Y	.	.	.
BTK	695	broad.mit.edu	36	X	100500061	100500061	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000061	exon12	c.G995A	p.R332H	.	.	.
BTK	695	broad.mit.edu	36	X	100516237	100516237	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000061	exon3	c.C183A	p.I61I	.	.	.
HNRNPH2	3188	broad.mit.edu	36	X	100554674	100554674	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019597	exon2	c.G1042T	p.D348Y	.	.	.
ARMCX3	51566	broad.mit.edu	36	X	100766719	100766719	+	Nonsense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_177948	exon5	c.A94T	p.K32X	.	.	.
CLCN4	1183	broad.mit.edu	36	X	10136600	10136600	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001830	exon9	c.C1359T	p.I453I	.	.	.
CLCN4	1183	broad.mit.edu	36	X	10148805	10148805	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001830	exon12	c.C2080T	p.R694W	.	.	.
GPRASP2	114928	broad.mit.edu	36	X	101856607	101856607	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004051	exon5	c.A154C	p.T52P	.	.	.
GPRASP2	114928	broad.mit.edu	36	X	101857639	101857639	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004051	exon5	c.G1186T	p.E396X	.	.	.
GPRASP2	114928	broad.mit.edu	36	X	101858155	101858155	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004051	exon5	c.C1702T	p.R568X	.	.	.
NXF3	56000	broad.mit.edu	36	X	102221599	102221599	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022052	exon12	c.G1050T	p.Q350H	.	.	.
TMEM31	203562	broad.mit.edu	36	X	102855277	102855277	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182541	exon3	c.A202C	p.I68L	.	.	.
H2BFWT	158983	broad.mit.edu	36	X	103154467	103154467	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001002916	exon1	c.C422T	p.A141V	.	.	.
MID1	4281	broad.mit.edu	36	X	10377522	10377522	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193277	exon10	c.C1890T	p.D630D	.	.	.
IL1RAPL2	26280	broad.mit.edu	36	X	104885870	104885870	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017416	exon10	c.C1236A	p.D412E	.	.	.
MID1	4281	broad.mit.edu	36	X	10494931	10494931	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193277	exon2	c.G657T	p.L219F	.	.	.
MID1	4281	broad.mit.edu	36	X	10495339	10495339	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193277	exon2	c.C249T	p.I83I	.	.	.
NRK	203447	broad.mit.edu	36	X	105024527	105024527	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198465	exon6	c.G425T	p.R142I	.	.	.
NRK	203447	broad.mit.edu	36	X	105054063	105054063	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198465	exon18	c.G2908T	p.D970Y	.	.	.
NRK	203447	broad.mit.edu	36	X	105076595	105076595	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198465	exon25	c.A4135C	p.I1379L	.	.	.
SERPINA7	6906	broad.mit.edu	36	X	105167667	105167667	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000354	exon2	c.G39A	p.G13G	.	.	.
MUM1L1	139221	broad.mit.edu	36	X	105336314	105336314	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152423	exon5	c.C233T	p.A78V	.	.	.
MUM1L1	139221	broad.mit.edu	36	X	105336877	105336877	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152423	exon5	c.C796A	p.L266M	.	.	.
CXorf57	55086	broad.mit.edu	36	X	105762589	105762589	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018015	exon4	c.T1058G	p.L353R	.	.	.
TEX13B	56156	broad.mit.edu	36	X	107111197	107111197	+	Silent	SNP	G	A	A	rs41300888	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031273	exon3	c.C708T	p.C236C	.	.	.
VSIG1	340547	broad.mit.edu	36	X	107206983	107206983	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182607	exon7	c.G880T	p.E294X	.	.	.
ATG4A	115201	broad.mit.edu	36	X	107256022	107256022	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178270	exon2	c.G70T	p.D24Y	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107710897	107710897	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000495	exon16	c.G920A	p.G307D	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107797020	107797020	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000495	exon40	c.T3555C	p.G1185G	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107824744	107824744	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033380	exon49	c.G4745A	p.R1582Q	.	.	.
IRS4	8471	broad.mit.edu	36	X	107864226	107864226	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003604	exon1	c.G2005T	p.E669X	.	.	.
IRS4	8471	broad.mit.edu	36	X	107864642	107864642	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003604	exon1	c.G1589A	p.R530Q	.	.	.
IRS4	8471	broad.mit.edu	36	X	107864931	107864931	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003604	exon1	c.C1300T	p.R434C	.	.	.
IRS4	8471	broad.mit.edu	36	X	107865034	107865034	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003604	exon1	c.C1197T	p.F399F	.	.	.
GUCY2F	2986	broad.mit.edu	36	X	108525236	108525236	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001522	exon12	c.T2414A	p.I805K	.	.	.
RGAG1	57529	broad.mit.edu	36	X	109580527	109580527	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020769	exon3	c.G26A	p.R9Q	.	.	.
RGAG1	57529	broad.mit.edu	36	X	109580588	109580588	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020769	exon3	c.T87C	p.C29C	.	.	.
RGAG1	57529	broad.mit.edu	36	X	109581525	109581525	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020769	exon3	c.G1024T	p.D342Y	.	.	.
RGAG1	57529	broad.mit.edu	36	X	109583421	109583421	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020769	exon3	c.G2920T	p.E974X	.	.	.
RGAG1	57529	broad.mit.edu	36	X	109584000	109584000	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020769	exon3	c.G3499T	p.E1167X	.	.	.
RGAG1	57529	broad.mit.edu	36	X	109584163	109584163	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020769	exon3	c.G3662A	p.R1221K	.	.	.
CHRDL1	91851	broad.mit.edu	36	X	109818563	109818563	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143981	exon9	c.C903T	p.I301I	.	.	.
CHRDL1	91851	broad.mit.edu	36	X	109922056	109922056	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143981	exon2	c.A10C	p.K4Q	.	.	.
PAK3	5063	broad.mit.edu	36	X	110325772	110325772	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128166	exon13	c.G1157A	p.R386K	.	.	.
DCX	1641	broad.mit.edu	36	X	110540014	110540014	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178153	exon2	c.C269A	p.S90Y	.	.	.
DCX	1641	broad.mit.edu	36	X	110540107	110540107	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178153	exon2	c.G176A	p.R59H	.	.	.
ARHGAP6	395	broad.mit.edu	36	X	11116865	11116865	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013423	exon4	c.C372A	p.L124L	.	.	.
ZCCHC16	340595	broad.mit.edu	36	X	111584873	111584873	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004308	exon3	c.C261A	p.I87I	.	.	.
HTR2C	3358	broad.mit.edu	36	X	113872206	113872206	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000868	exon4	c.C283A	p.L95I	.	.	.
HTR2C	3358	broad.mit.edu	36	X	114047684	114047684	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000868	exon6	c.A827G	p.N276S	.	.	.
IL13RA2	3598	broad.mit.edu	36	X	114146121	114146121	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000640	exon9	c.G1011A	p.S337S	.	.	.
IL13RA2	3598	broad.mit.edu	36	X	114158080	114158080	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000640	exon2	c.C9T	p.F3F	.	.	.
PLS3	5358	broad.mit.edu	36	X	114770447	114770447	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005032	exon5	c.G412T	p.E138X	.	.	.
AGTR2	186	broad.mit.edu	36	X	115217621	115217621	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000686	exon3	c.C60T	p.F20F	.	.	.
WDR44	54521	broad.mit.edu	36	X	117411185	117411185	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001184966	exon3	c.C674A	p.P225H	.	.	.
DOCK11	139818	broad.mit.edu	36	X	117617183	117617183	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144658	exon23	c.G2526A	p.S842S	.	.	.
DOCK11	139818	broad.mit.edu	36	X	117667056	117667056	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144658	exon41	c.C4519A	p.L1507I	.	.	.
DOCK11	139818	broad.mit.edu	36	X	117694002	117694002	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144658	exon47	c.C5275A	p.L1759I	.	.	.
IL13RA1	3597	broad.mit.edu	36	X	117794424	117794424	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001560	exon10	c.G1113T	p.K371N	.	.	.
LONRF3	79836	broad.mit.edu	36	X	118029830	118029830	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024778	exon7	c.C1554T	p.F518F	.	.	.
KIAA1210	57481	broad.mit.edu	36	X	118104626	118104626	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020721	exon11	c.T4595C	p.L1532P	.	.	.
KIAA1210	57481	broad.mit.edu	36	X	118123122	118123122	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020721	exon7	c.G929T	p.R310L	.	.	.
FAM70A	55026	broad.mit.edu	36	X	119294894	119294894	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017938	exon8	c.C621T	p.I207I	.	.	.
CUL4B	8450	broad.mit.edu	36	X	119592438	119592438	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003588	exon2	c.C63T	p.D21D	.	.	.
THOC2	57187	broad.mit.edu	36	X	122584771	122584771	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001081550	exon29	c.A3548G	p.E1183G	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123342732	123342732	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014253	exon31	c.C7513T	p.R2505W	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123347589	123347589	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014253	exon28	c.A5674G	p.M1892V	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123606864	123606864	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014253	exon10	c.C1686A	p.S562S	.	.	.
DCAF12L2	340578	broad.mit.edu	36	X	125127337	125127337	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013628	exon1	c.C252T	p.P84P	.	.	.
FRMPD4	9758	broad.mit.edu	36	X	12635631	12635631	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014728	exon13	c.C1410T	p.I470I	.	.	.
FRMPD4	9758	broad.mit.edu	36	X	12646125	12646125	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014728	exon16	c.C3259T	p.R1087C	.	.	.
TLR7	51284	broad.mit.edu	36	X	12813948	12813948	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016562	exon3	c.C400A	p.L134M	.	.	.
TLR7	51284	broad.mit.edu	36	X	12814758	12814758	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016562	exon3	c.C1210A	p.L404I	.	.	.
SMARCA1	6594	broad.mit.edu	36	X	128473586	128473586	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003069	exon6	c.G686A	p.R229Q	.	.	.
TLR8	51311	broad.mit.edu	36	X	12848999	12848999	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138636	exon2	c.A1919C	p.N640T	.	.	.
TLR8	51311	broad.mit.edu	36	X	12849183	12849183	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138636	exon2	c.C2103A	p.L701L	.	.	.
OCRL	4952	broad.mit.edu	36	X	128548662	128548662	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001587	exon19	c.G2118T	p.E706D	.	.	.
ZDHHC9	51114	broad.mit.edu	36	X	128785385	128785385	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016032	exon5	c.C438A	p.I146I	.	.	.
ELF4	2000	broad.mit.edu	36	X	129032813	129032813	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001421	exon7	c.G692T	p.W231L	.	.	.
RAB33A	9363	broad.mit.edu	36	X	129146296	129146296	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004794	exon2	c.G615T	p.Q205H	.	.	.
ZNF280C	55609	broad.mit.edu	36	X	129167026	129167026	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017666	exon17	c.C2087A	p.S696Y	.	.	.
SLC25A14	9016	broad.mit.edu	36	X	129310950	129310950	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003951	exon4	c.A362C	p.K121T	.	.	.
GPR119	139760	broad.mit.edu	36	X	129346982	129346982	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178471	exon1	c.C121A	p.L41I	.	.	.
IGSF1	3547	broad.mit.edu	36	X	130240839	130240839	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001170961	exon11	c.C1724A	p.S575Y	.	.	.
IGSF1	3547	broad.mit.edu	36	X	130243494	130243494	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001170962	exon7	c.C1325A	p.S442Y	.	.	.
IGSF1	3547	broad.mit.edu	36	X	130246852	130246852	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001170962	exon4	c.C622T	p.L208L	.	.	.
OR13H1	347468	broad.mit.edu	36	X	130505742	130505742	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004486	exon1	c.A14G	p.N5S	.	.	.
OR13H1	347468	broad.mit.edu	36	X	130506410	130506410	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004486	exon1	c.C682T	p.R228C	.	.	.
MST4	51765	broad.mit.edu	36	X	131035856	131035856	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042453	exon11	c.C1008T	p.D336D	.	.	.
ATXN3L	92552	broad.mit.edu	36	X	13247522	13247522	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135995	exon1	c.C453A	p.F151L	.	.	.
CCDC160	347475	broad.mit.edu	36	X	133206901	133206901	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001101357	exon2	c.G405T	p.K135N	.	.	.
CCDC160	347475	broad.mit.edu	36	X	133207181	133207181	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001101357	exon2	c.G685T	p.E229X	.	.	.
HPRT1	3251	broad.mit.edu	36	X	133455281	133455281	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000194	exon6	c.C480T	p.V160V	.	.	.
ZNF75D	7626	broad.mit.edu	36	X	134248780	134248780	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007131	exon6	c.G1488T	p.Q496H	.	.	.
ZNF449	203523	broad.mit.edu	36	X	134322306	134322306	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152695	exon5	c.G1196T	p.R399I	.	.	.
ZNF449	203523	broad.mit.edu	36	X	134322386	134322386	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152695	exon5	c.C1276T	p.L426L	.	.	.
SAGE1	55511	broad.mit.edu	36	X	134820264	134820264	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018666	exon16	c.G1889A	p.R630H	.	.	.
FHL1	2273	broad.mit.edu	36	X	135116398	135116398	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001159702	exon3	c.C141T	p.I47I	.	.	.
MAP7D3	79649	broad.mit.edu	36	X	135154582	135154582	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001173517	exon4	c.A292G	p.T98A	.	.	.
GPR112	139378	broad.mit.edu	36	X	135232754	135232754	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153834	exon5	c.C222A	p.F74L	.	.	.
GPR112	139378	broad.mit.edu	36	X	135260213	135260213	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153834	exon6	c.C6682A	p.L2228I	.	.	.
GPR112	139378	broad.mit.edu	36	X	135315653	135315653	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153834	exon23	c.C8791T	p.R2931W	.	.	.
BRS3	680	broad.mit.edu	36	X	135398289	135398289	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001727	exon1	c.G350A	p.R117K	.	.	.
BRS3	680	broad.mit.edu	36	X	135402007	135402007	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001727	exon3	c.G1007T	p.S336I	.	.	.
EGFL6	25975	broad.mit.edu	36	X	13546029	13546029	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001167890	exon8	c.G1038T	p.E346D	.	.	.
EGFL6	25975	broad.mit.edu	36	X	13555108	13555108	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001167890	exon11	c.G1346A	p.R449Q	.	.	.
ARHGEF6	9459	broad.mit.edu	36	X	135579318	135579318	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004840	exon21	c.G2179T	p.E727X	.	.	.
ARHGEF6	9459	broad.mit.edu	36	X	135584859	135584859	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004840	exon19	c.G2008A	p.A670T	.	.	.
TCEANC	170082	broad.mit.edu	36	X	13591158	13591158	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152634	exon4	c.G700T	p.E234X	.	.	.
GPR101	83550	broad.mit.edu	36	X	135940829	135940829	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_054021	exon1	c.C671T	p.A224V	.	.	.
GPR101	83550	broad.mit.edu	36	X	135941173	135941173	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_054021	exon1	c.C327T	p.S109S	.	.	.
CSF2RA	1438	broad.mit.edu	36	X	1361670	1361670	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_172245	exon3	c.C74T	p.S25L	.	.	.
RAB9A	9367	broad.mit.edu	36	X	13637096	13637096	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001195328	exon2	c.G310T	p.E104X	.	.	.
OFD1	8481	broad.mit.edu	36	X	13672536	13672536	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003611	exon6	c.C494T	p.S165L	.	.	.
CSF2RA	1438	broad.mit.edu	36	X	1367442	1367442	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_172245	exon5	c.C250T	p.R84C	.	.	.
OFD1	8481	broad.mit.edu	36	X	13679308	13679308	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003611	exon10	c.G955T	p.E319X	.	.	.
FGF13	2258	broad.mit.edu	36	X	137545351	137545351	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001139501	exon7	c.G477T	p.E159D	.	.	.
ATP11C	286410	broad.mit.edu	36	X	138653408	138653408	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010986	exon26	c.C3015A	p.V1005V	.	.	.
CSF2RA	1438	broad.mit.edu	36	X	1388338	1388338	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_172245	exon13	c.G1169A	p.R390H	.	.	.
CXorf66	347487	broad.mit.edu	36	X	138866443	138866443	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001013403	exon3	c.T364G	p.S122A	.	.	.
MAGEC3	139081	broad.mit.edu	36	X	140813102	140813102	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138702	exon8	c.G1750T	p.E584X	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140821840	140821840	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005462	exon4	c.T984C	p.S328S	.	.	.
MAGEC2	51438	broad.mit.edu	36	X	141118845	141118845	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016249	exon3	c.G595T	p.E199X	.	.	.
SPANXN4	441525	broad.mit.edu	36	X	141949572	141949572	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001009613	exon2	c.G174T	p.K58N	.	.	.
SPANXN4	441525	broad.mit.edu	36	X	141949651	141949651	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001009613	exon2	c.G253T	p.D85Y	.	.	.
SPANXN3	139067	broad.mit.edu	36	X	142424583	142424583	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001009609	exon2	c.A153G	p.I51M	.	.	.
SLITRK4	139065	broad.mit.edu	36	X	142546354	142546354	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173078	exon2	c.C237A	p.F79L	.	.	.
UBE2NL	389898	broad.mit.edu	36	X	142795125	142795125	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001012989	exon1	c.G257T	p.R86I	.	.	.
IL3RA	3563	broad.mit.edu	36	X	1431018	1431018	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002183	exon5	c.G324T	p.E108D	.	.	.
SLITRK2	84631	broad.mit.edu	36	X	144712345	144712345	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001144006	exon3	c.T710G	p.F237C	.	.	.
FMR1	2332	broad.mit.edu	36	X	146818011	146818011	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001185081	exon5	c.G413A	p.R138Q	.	.	.
FMR1	2332	broad.mit.edu	36	X	146826677	146826677	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001185081	exon11	c.G991A	p.E331K	.	.	.
FMR1	2332	broad.mit.edu	36	X	146834189	146834189	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001185081	exon13	c.G1246A	p.A416T	.	.	.
FMR1	2332	broad.mit.edu	36	X	146834199	146834199	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001185081	exon13	c.C1256T	p.T419M	.	.	.
FMR1NB	158521	broad.mit.edu	36	X	146897915	146897915	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152578	exon4	c.C624A	p.F208L	.	.	.
AFF2	2334	broad.mit.edu	36	X	147551237	147551237	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002025	exon3	c.G297T	p.K99N	.	.	.
AFF2	2334	broad.mit.edu	36	X	147699130	147699130	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002025	exon4	c.C1080A	p.I360I	.	.	.
MAGEA8	4107	broad.mit.edu	36	X	148774065	148774065	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001166401	exon3	c.C361T	p.R121C	.	.	.
MAMLD1	10046	broad.mit.edu	36	X	149388764	149388764	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001177466	exon2	c.C186A	p.C62X	.	.	.
MTMR1	8776	broad.mit.edu	36	X	149646433	149646433	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003828	exon4	c.C417T	p.V139V	.	.	.
MAGEA4	4103	broad.mit.edu	36	X	150842932	150842932	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002362	exon3	c.T140C	p.V47A	.	.	.
GABRE	2564	broad.mit.edu	36	X	150881712	150881712	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004961	exon4	c.C402T	p.N134N	.	.	.
GABRA3	2556	broad.mit.edu	36	X	151283650	151283650	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000808	exon2	c.C49A	p.L17I	.	.	.
MAGEA6	4105	broad.mit.edu	36	X	151620339	151620339	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005363	exon3	c.C373T	p.R125X	.	.	.
NSDHL	50814	broad.mit.edu	36	X	151781840	151781840	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001129765	exon6	c.C459T	p.V153V	.	.	.
NSDHL	50814	broad.mit.edu	36	X	151785153	151785153	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001129765	exon7	c.C678T	p.F226F	.	.	.
ASB11	140456	broad.mit.edu	36	X	15243589	15243589	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080873	exon1	c.G60A	p.T20T	.	.	.
ATP2B3	492	broad.mit.edu	36	X	152478548	152478548	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021949	exon16	c.C2793T	p.G931G	.	.	.
SLC6A8	6535	broad.mit.edu	36	X	152612826	152612826	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005629	exon9	c.G1302A	p.P434P	.	.	.
FIGF	2277	broad.mit.edu	36	X	15286145	15286145	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004469	exon3	c.C393A	p.F131L	.	.	.
OPN1LW	5956	broad.mit.edu	36	X	153075110	153075110	+	Missense_Mutation	SNP	G	A	A	rs1065440	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020061	exon5	c.G892A	p.A298T	.	.	.
TKTL1	8277	broad.mit.edu	36	X	153190977	153190977	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145933	exon3	c.C321T	p.F107F	.	.	.
SLC10A3	8273	broad.mit.edu	36	X	153370120	153370120	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019848	exon2	c.G354T	p.K118N	.	.	.
G6PD	2539	broad.mit.edu	36	X	153414114	153414114	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000402	exon10	c.G1239T	p.Q413H	.	.	.
MPP1	4354	broad.mit.edu	36	X	153663174	153663174	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002436	exon10	c.C1044T	p.F348F	.	.	.
F8	2157	broad.mit.edu	36	X	153741995	153741995	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000132	exon25	c.C6806A	p.S2269Y	.	.	.
F8	2157	broad.mit.edu	36	X	153810543	153810543	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000132	exon14	c.C4716T	p.S1572S	.	.	.
F8	2157	broad.mit.edu	36	X	153812586	153812586	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000132	exon14	c.G2673T	p.K891N	.	.	.
TMLHE	55217	broad.mit.edu	36	X	154396905	154396905	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184797	exon4	c.G574A	p.V192I	.	.	.
TMLHE	55217	broad.mit.edu	36	X	154427989	154427989	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184797	exon2	c.C143A	p.S48Y	.	.	.
P2RY8	286530	broad.mit.edu	36	X	1544787	1544787	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178129	exon2	c.G665A	p.R222H	.	.	.
SPRY3	10251	broad.mit.edu	36	X	154657573	154657573	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005840	exon2	c.G846T	p.K282N	.	.	.
ACE2	59272	broad.mit.edu	36	X	15506250	15506250	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021804	exon10	c.A1180C	p.N394H	.	.	.
ACE2	59272	broad.mit.edu	36	X	15519757	15519757	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021804	exon5	c.C583T	p.H195Y	.	.	.
ACE2	59272	broad.mit.edu	36	X	15519834	15519834	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021804	exon5	c.G506T	p.R169I	.	.	.
AKAP17A	8227	broad.mit.edu	36	X	1672547	1672547	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005088	exon2	c.C192A	p.F64L	.	.	.
TXLNG	55787	broad.mit.edu	36	X	16767910	16767910	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018360	exon9	c.C1198T	p.R400C	.	.	.
RBBP7	5931	broad.mit.edu	36	X	16780621	16780621	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198719	exon8	c.G1069A	p.E357K	.	.	.
SCML2	10389	broad.mit.edu	36	X	18174717	18174717	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006089	exon13	c.C1723T	p.R575X	.	.	.
CDKL5	6792	broad.mit.edu	36	X	18532743	18532743	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003159	exon12	c.C1778A	p.S593Y	.	.	.
RS1	6247	broad.mit.edu	36	X	18570082	18570082	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000330	exon6	c.G638A	p.R213Q	.	.	.
PPEF1	5475	broad.mit.edu	36	X	18689599	18689599	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152226	exon9	c.T542A	p.F181Y	.	.	.
PHKA2	5256	broad.mit.edu	36	X	18821543	18821543	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000292	exon33	c.C3689T	p.S1230L	.	.	.
GPR64	10149	broad.mit.edu	36	X	18938719	18938719	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184837	exon15	c.G1108T	p.E370X	.	.	.
PDHA1	5160	broad.mit.edu	36	X	19278110	19278110	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001173454	exon4	c.G366T	p.Q122H	.	.	.
MAP3K15	389840	broad.mit.edu	36	X	19385047	19385047	+	5'UTR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001671	exon6	c.G900A	p.A300A	.	.	.
MAP3K15	389840	broad.mit.edu	36	X	19388144	19388144	+	5'UTR	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001671	exon5	c.G768T	p.E256D	.	.	.
SH3KBP1	30011	broad.mit.edu	36	X	19634938	19634938	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001024666	exon3	c.C261A	p.I87I	.	.	.
MAP7D2	256714	broad.mit.edu	36	X	19941125	19941125	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001168465	exon14	c.A1853G	p.K618R	.	.	.
MAP7D2	256714	broad.mit.edu	36	X	19944318	19944318	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001168465	exon11	c.C1459T	p.R487C	.	.	.
MAP7D2	256714	broad.mit.edu	36	X	19972495	19972495	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001168465	exon7	c.C787T	p.R263X	.	.	.
RPS6KA3	6197	broad.mit.edu	36	X	20095714	20095714	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004586	exon17	c.C1516A	p.L506I	.	.	.
DHRSX	207063	broad.mit.edu	36	X	2149178	2149178	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145177	exon7	c.G897T	p.E299D	.	.	.
ZNF645	158506	broad.mit.edu	36	X	22201878	22201878	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152577	exon1	c.G849A	p.A283A	.	.	.
CXorf58	254158	broad.mit.edu	36	X	23863303	23863303	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152761	exon7	c.C625T	p.L209F	.	.	.
ZBED1	9189	broad.mit.edu	36	X	2417653	2417653	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004729	exon2	c.G1108A	p.V370I	.	.	.
Unknown	0	broad.mit.edu	36	X	24292188	24292188	+	IGR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001136234	exon1	c.C1390T	p.R464C	.	.	.
PDK3	5165	broad.mit.edu	36	X	24456156	24456156	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142386	exon9	c.C895T	p.R299C	.	.	.
CD99	4267	broad.mit.edu	36	X	2654308	2654308	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002414	exon8	c.C369T	p.A123A	.	.	.
DCAF8L1	139425	broad.mit.edu	36	X	27909125	27909125	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001017930	exon1	c.G248A	p.S83N	.	.	.
IL1RAPL1	11141	broad.mit.edu	36	X	29845582	29845582	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014271	exon7	c.G859A	p.E287K	.	.	.
IL1RAPL1	11141	broad.mit.edu	36	X	29883657	29883657	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014271	exon11	c.C1890T	p.Y630Y	.	.	.
MAGEB2	4113	broad.mit.edu	36	X	30147107	30147107	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002364	exon2	c.C489A	p.V163V	.	.	.
MAGEB1	4112	broad.mit.edu	36	X	30178934	30178934	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002363	exon4	c.C403T	p.L135L	.	.	.
ARSF	416	broad.mit.edu	36	X	3029148	3029148	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004042	exon8	c.G988A	p.D330N	.	.	.
CXorf21	80231	broad.mit.edu	36	X	30487504	30487504	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025159	exon3	c.G890T	p.S297I	.	.	.
DMD	1756	broad.mit.edu	36	X	31857698	31857698	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004011	exon19	c.T2825C	p.I942T	.	.	.
DMD	1756	broad.mit.edu	36	X	32271308	32271308	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004011	exon12	c.G1580A	p.R527K	.	.	.
DMD	1756	broad.mit.edu	36	X	32340217	32340217	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004011	exon1	c.C31A	p.P11T	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3239372	3239372	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015419	exon7	c.C6872T	p.S2291L	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3248514	3248514	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015419	exon5	c.C5212A	p.L1738I	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3249636	3249636	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015419	exon5	c.G4090T	p.E1364X	.	.	.
DMD	1756	broad.mit.edu	36	X	32523806	32523806	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004006	exon13	c.G1591T	p.E531X	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3258147	3258147	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015419	exon4	c.G621A	p.P207P	.	.	.
DMD	1756	broad.mit.edu	36	X	32744618	32744618	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004006	exon6	c.C418A	p.L140I	.	.	.
FAM47A	158724	broad.mit.edu	36	X	34058319	34058319	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_203408	exon1	c.C1998T	p.D666D	.	.	.
MAGEB16	139604	broad.mit.edu	36	X	35731005	35731005	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099921	exon2	c.G771T	p.E257D	.	.	.
CXorf22	170063	broad.mit.edu	36	X	35903846	35903846	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152632	exon15	c.C2608T	p.R870W	.	.	.
FAM47C	442444	broad.mit.edu	36	X	36937412	36937412	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001013736	exon1	c.G1008T	p.K336N	.	.	.
PRRG1	5638	broad.mit.edu	36	X	37170126	37170126	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001173486	exon3	c.C123A	p.F41L	.	.	.
SYTL5	94122	broad.mit.edu	36	X	37798617	37798617	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138780	exon3	c.C327T	p.I109I	.	.	.
ATP6AP2	10159	broad.mit.edu	36	X	40349940	40349940	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005765	exon9	c.C1042T	p.R348X	.	.	.
USP9X	8239	broad.mit.edu	36	X	40969284	40969284	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039590	exon41	c.G7011T	p.L2337F	.	.	.
GPR34	2857	broad.mit.edu	36	X	41440158	41440158	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005300	exon3	c.C328T	p.R110X	.	.	.
EFHC2	80258	broad.mit.edu	36	X	43922642	43922642	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025184	exon12	c.G1864A	p.A622T	.	.	.
ZNF674	641339	broad.mit.edu	36	X	46245425	46245425	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001190417	exon6	c.C528T	p.C176C	.	.	.
RP2	6102	broad.mit.edu	36	X	46598104	46598104	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006915	exon2	c.C352T	p.R118C	.	.	.
PHF16	9767	broad.mit.edu	36	X	46798732	46798732	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014735	exon9	c.C1201T	p.R401W	.	.	.
PHF16	9767	broad.mit.edu	36	X	46803212	46803212	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014735	exon11	c.G2261A	p.R754Q	.	.	.
RBM10	8241	broad.mit.edu	36	X	46930602	46930602	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005676	exon23	c.G2539T	p.D847Y	.	.	.
UBA1	7317	broad.mit.edu	36	X	46947477	46947477	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153280	exon13	c.C1339T	p.R447C	.	.	.
USP11	8237	broad.mit.edu	36	X	46992159	46992159	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004651	exon21	c.C2778A	p.F926L	.	.	.
ZNF157	7712	broad.mit.edu	36	X	47157560	47157560	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003446	exon4	c.G1144T	p.G382X	.	.	.
ZNF41	7592	broad.mit.edu	36	X	47192420	47192420	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153380	exon5	c.C1693T	p.R565C	.	.	.
SYN1	6853	broad.mit.edu	36	X	47349355	47349355	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133499	exon5	c.T740C	p.I247T	.	.	.
CFP	5199	broad.mit.edu	36	X	47370728	47370728	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002621	exon8	c.C1075T	p.R359X	.	.	.
ZNF81	347344	broad.mit.edu	36	X	47660146	47660146	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007137	exon5	c.T1157G	p.F386C	.	.	.
ZNF182	7569	broad.mit.edu	36	X	47721634	47721634	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006962	exon7	c.G796A	p.E266K	.	.	.
ZNF630	57232	broad.mit.edu	36	X	47803171	47803171	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001190255	exon5	c.G1562T	p.R521I	.	.	.
GATA1	2623	broad.mit.edu	36	X	48537369	48537369	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002049	exon6	c.G1096T	p.G366C	.	.	.
HDAC6	10013	broad.mit.edu	36	X	48546262	48546262	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006044	exon3	c.C134A	p.P45H	.	.	.
HDAC6	10013	broad.mit.edu	36	X	48566882	48566882	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006044	exon25	c.G3129T	p.Q1043H	.	.	.
GRIPAP1	56850	broad.mit.edu	36	X	48732308	48732308	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020137	exon7	c.C616A	p.L206I	.	.	.
CACNA1F	778	broad.mit.edu	36	X	48970441	48970441	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005183	exon9	c.A1211G	p.Y404C	.	.	.
CLCN5	1184	broad.mit.edu	36	X	49741583	49741583	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001127899	exon13	c.C1815T	p.I605I	.	.	.
AKAP4	8852	broad.mit.edu	36	X	49844028	49844028	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003886	exon5	c.G2076A	p.A692A	.	.	.
CCNB3	85417	broad.mit.edu	36	X	50069124	50069124	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033031	exon5	c.G1215T	p.E405D	.	.	.
CCNB3	85417	broad.mit.edu	36	X	50069483	50069483	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033031	exon5	c.C1574T	p.P525L	.	.	.
DGKK	139189	broad.mit.edu	36	X	50138379	50138379	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001013742	exon21	c.C2913A	p.I971I	.	.	.
TSPYL2	64061	broad.mit.edu	36	X	53131149	53131149	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022117	exon5	c.C1159A	p.L387M	.	.	.
RIBC1	158787	broad.mit.edu	36	X	53474440	53474440	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031745	exon7	c.G1035A	p.Q345Q	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53577735	53577735	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031407	exon83	c.G12980A	p.R4327Q	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53591642	53591642	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031407	exon68	c.G10353T	p.E3451D	.	.	.
WNK3	65267	broad.mit.edu	36	X	54280341	54280341	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001002838	exon20	c.G4242A	p.E1414E	.	.	.
WNK3	65267	broad.mit.edu	36	X	54294816	54294816	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001002838	exon14	c.G2397T	p.E799D	.	.	.
FGD1	2245	broad.mit.edu	36	X	54498619	54498619	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004463	exon12	c.G2002A	p.E668K	.	.	.
GNL3L	54552	broad.mit.edu	36	X	54575730	54575730	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019067	exon2	c.G6T	p.M2I	.	.	.
ALAS2	212	broad.mit.edu	36	X	55060697	55060697	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001037967	exon6	c.C839A	p.S280Y	.	.	.
USP51	158880	broad.mit.edu	36	X	55530637	55530637	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201286	exon2	c.C1461A	p.I487I	.	.	.
USP51	158880	broad.mit.edu	36	X	55530699	55530699	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201286	exon2	c.G1399T	p.D467Y	.	.	.
ZXDA	7789	broad.mit.edu	36	X	57952385	57952385	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007156	exon1	c.A1195C	p.T399P	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5831228	5831228	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020742	exon5	c.C1491T	p.F497F	.	.	.
ARHGEF9	23229	broad.mit.edu	36	X	62802596	62802596	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001173480	exon6	c.G645A	p.S215S	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63328433	63328433	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152424	exon2	c.C1459T	p.L487L	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63328673	63328673	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152424	exon2	c.G1219T	p.E407X	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63329218	63329218	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152424	exon2	c.G674T	p.R225I	.	.	.
MTMR8	55613	broad.mit.edu	36	X	63405404	63405404	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017677	exon14	c.G1853A	p.S618N	.	.	.
MTMR8	55613	broad.mit.edu	36	X	63480312	63480312	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017677	exon8	c.A879C	p.K293N	.	.	.
MTMR8	55613	broad.mit.edu	36	X	63485350	63485350	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017677	exon6	c.G647C	p.C216S	.	.	.
MTMR8	55613	broad.mit.edu	36	X	63491489	63491489	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017677	exon4	c.G361T	p.E121X	.	.	.
HEPH	9843	broad.mit.edu	36	X	65400245	65400245	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130860	exon20	c.G3243T	p.E1081D	.	.	.
HEPH	9843	broad.mit.edu	36	X	65403071	65403071	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130860	exon21	c.G3315T	p.K1105N	.	.	.
PJA1	64219	broad.mit.edu	36	X	68297918	68297918	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001032396	exon2	c.G1724A	p.G575D	.	.	.
PJA1	64219	broad.mit.edu	36	X	68299487	68299487	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001032396	exon2	c.C155T	p.S52L	.	.	.
EDA	1896	broad.mit.edu	36	X	68753235	68753235	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005609	exon1	c.G358T	p.E120X	.	.	.
AWAT2	158835	broad.mit.edu	36	X	69178512	69178512	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002254	exon7	c.G873T	p.K291N	.	.	.
AWAT2	158835	broad.mit.edu	36	X	69180071	69180071	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002254	exon4	c.G454T	p.E152X	.	.	.
OTUD6A	139562	broad.mit.edu	36	X	69199621	69199621	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207320	exon1	c.C522T	p.T174T	.	.	.
IGBP1	3476	broad.mit.edu	36	X	69270550	69270550	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001551	exon2	c.C28T	p.P10S	.	.	.
AWAT1	158833	broad.mit.edu	36	X	69372333	69372333	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001013579	exon2	c.C119A	p.S40Y	.	.	.
DLG3	1741	broad.mit.edu	36	X	69586021	69586021	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021120	exon3	c.A496T	p.I166F	.	.	.
DLG3	1741	broad.mit.edu	36	X	69629118	69629118	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021120	exon12	c.C1720T	p.R574X	.	.	.
TEX11	56159	broad.mit.edu	36	X	69666550	69666550	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001003811	exon30	c.C2590A	p.L864I	.	.	.
TEX11	56159	broad.mit.edu	36	X	69877333	69877333	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001003811	exon12	c.T831C	p.D277D	.	.	.
TEX11	56159	broad.mit.edu	36	X	69943315	69943315	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001003811	exon10	c.G702T	p.K234N	.	.	.
FOXO4	4303	broad.mit.edu	36	X	70233363	70233363	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005938	exon1	c.C260T	p.A87V	.	.	.
NLGN3	54413	broad.mit.edu	36	X	70305943	70305943	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166660	exon6	c.C1698T	p.I566I	.	.	.
HDHD1	8226	broad.mit.edu	36	X	7033671	7033671	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001178135	exon2	c.G270A	p.A90A	.	.	.
ZMYM3	9203	broad.mit.edu	36	X	70381434	70381434	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171162	exon19	c.C3006A	p.L1002L	.	.	.
TAF1	6872	broad.mit.edu	36	X	70520630	70520630	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138923	exon13	c.C2038A	p.L680I	.	.	.
TAF1	6872	broad.mit.edu	36	X	70524864	70524864	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138923	exon16	c.G2477A	p.R826Q	.	.	.
TAF1	6872	broad.mit.edu	36	X	70530793	70530793	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138923	exon22	c.C3376T	p.R1126W	.	.	.
NHSL2	340527	broad.mit.edu	36	X	71276883	71276883	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001013627	exon6	c.C2760A	p.S920R	.	.	.
ERCC6L	54821	broad.mit.edu	36	X	71344298	71344298	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017669	exon2	c.G1044T	p.K348N	.	.	.
PHKA1	5255	broad.mit.edu	36	X	71719015	71719015	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172436	exon29	c.A3240C	p.E1080D	.	.	.
PHKA1	5255	broad.mit.edu	36	X	71739700	71739700	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172436	exon25	c.C2734T	p.R912X	.	.	.
PHKA1	5255	broad.mit.edu	36	X	71741905	71741905	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172436	exon24	c.G2579A	p.R860Q	.	.	.
NAP1L2	4674	broad.mit.edu	36	X	72349793	72349793	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021963	exon1	c.G1261A	p.V421I	.	.	.
RLIM	51132	broad.mit.edu	36	X	73728716	73728716	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_183353	exon5	c.C1159T	p.R387C	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73880153	73880153	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008537	exon3	c.C964T	p.R322X	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73880450	73880450	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008537	exon3	c.C667T	p.P223S	.	.	.
ABCB7	22	broad.mit.edu	36	X	74198901	74198901	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004299	exon14	c.C1925T	p.S642L	.	.	.
ZDHHC15	158866	broad.mit.edu	36	X	74561279	74561279	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146256	exon7	c.T642G	p.F214L	.	.	.
MAGEE2	139599	broad.mit.edu	36	X	74921417	74921417	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138703	exon1	c.G195A	p.P65P	.	.	.
MAGEE1	57692	broad.mit.edu	36	X	75565864	75565864	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020932	exon1	c.C1137T	p.S379S	.	.	.
MAGEE1	57692	broad.mit.edu	36	X	75566700	75566700	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020932	exon1	c.G1973T	p.R658I	.	.	.
MAGEE1	57692	broad.mit.edu	36	X	75567454	75567454	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020932	exon1	c.C2727A	p.T909T	.	.	.
VCX	26609	broad.mit.edu	36	X	7771750	7771750	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013452	exon3	c.G314T	p.S105I	.	.	.
LPAR4	2846	broad.mit.edu	36	X	77897456	77897456	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005296	exon2	c.G434A	p.R145Q	.	.	.
FAM46D	169966	broad.mit.edu	36	X	79585173	79585173	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001170574	exon5	c.A479C	p.K160T	.	.	.
FAM46D	169966	broad.mit.edu	36	X	79585738	79585738	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001170574	exon5	c.T1044G	p.F348L	.	.	.
BRWD3	254065	broad.mit.edu	36	X	79886345	79886345	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153252	exon8	c.C655T	p.R219C	.	.	.
HMGN5	79366	broad.mit.edu	36	X	80257238	80257238	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030763	exon7	c.G415A	p.E139K	.	.	.
CYLC1	1538	broad.mit.edu	36	X	83013185	83013185	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021118	exon3	c.G128T	p.R43I	.	.	.
HDX	139324	broad.mit.edu	36	X	83463648	83463648	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001177479	exon11	c.G1978T	p.E660X	.	.	.
HDX	139324	broad.mit.edu	36	X	83485969	83485969	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001177479	exon7	c.G1605T	p.E535D	.	.	.
HDX	139324	broad.mit.edu	36	X	83610312	83610312	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001177479	exon4	c.G1075T	p.D359Y	.	.	.
HDX	139324	broad.mit.edu	36	X	83610483	83610483	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001177479	exon4	c.G904T	p.D302Y	.	.	.
CHM	1121	broad.mit.edu	36	X	85035897	85035897	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000390	exon12	c.C1462T	p.R488W	.	.	.
CHM	1121	broad.mit.edu	36	X	85042810	85042810	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000390	exon10	c.C1284A	p.I428I	.	.	.
DACH2	117154	broad.mit.edu	36	X	85290417	85290417	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_053281	exon1	c.T137G	p.F46C	.	.	.
DACH2	117154	broad.mit.edu	36	X	85856281	85856281	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_053281	exon6	c.G1006T	p.A336S	.	.	.
FAM9B	171483	broad.mit.edu	36	X	8957356	8957356	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_205849	exon5	c.G385T	p.E129X	.	.	.
PABPC5	140886	broad.mit.edu	36	X	90577584	90577584	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080832	exon2	c.G352T	p.D118Y	.	.	.
RPA4	29935	broad.mit.edu	36	X	96026078	96026078	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013347	exon1	c.G113T	p.R38I	.	.	.
DIAPH2	1730	broad.mit.edu	36	X	96571344	96571344	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006729	exon26	c.C3185T	p.A1062V	.	.	.
PCDH19	57526	broad.mit.edu	36	X	99438021	99438021	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001105243	exon5	c.G3216T	p.E1072D	.	.	.
TSPAN6	7105	broad.mit.edu	36	X	99774189	99774189	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003270	exon6	c.G618T	p.E206D	.	.	.
RIF1	55183	broad.mit.edu	36	2	152029073	152029073	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177664	exon30	c.4793delA	p.E1598fs	.	.	.
GRHL1	29841	broad.mit.edu	36	2	10018906	10018906	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198182	exon4	c.G559A	p.D187N	.	.	.
GRHL1	29841	broad.mit.edu	36	2	10021535	10021535	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198182	exon6	c.G816A	p.T272T	.	.	.
CHST10	9486	broad.mit.edu	36	2	100376642	100376642	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004854	exon7	c.G568T	p.D190Y	.	.	.
MAP4K4	9448	broad.mit.edu	36	2	101808297	101808297	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145687	exon5	c.G391A	p.A131T	.	.	.
MAP4K4	9448	broad.mit.edu	36	2	101869991	101869991	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145687	exon28	c.G3115T	p.E1039X	.	.	.
IL1R2	7850	broad.mit.edu	36	2	101998911	101998911	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173343	exon4	c.G479A	p.R160H	.	.	.
IL1R2	7850	broad.mit.edu	36	2	102005138	102005138	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173343	exon6	c.C746A	p.S249Y	.	.	.
IL1R1	3554	broad.mit.edu	36	2	102159446	102159446	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000877	exon11	c.C1505T	p.S502L	.	.	.
IL1RL2	8808	broad.mit.edu	36	2	102215991	102215991	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003854	exon10	c.C1272T	p.F424F	.	.	.
IL1RL2	8808	broad.mit.edu	36	2	102217964	102217964	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003854	exon11	c.C1473T	p.I491I	.	.	.
IL1RL1	9173	broad.mit.edu	36	2	102323057	102323057	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003856	exon4	c.C340A	p.P114T	.	.	.
IL18R1	8809	broad.mit.edu	36	2	102369817	102369817	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003855	exon7	c.C874A	p.L292I	.	.	.
IL18RAP	8807	broad.mit.edu	36	2	102434746	102434746	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003853	exon12	c.C1473A	p.I491I	.	.	.
MFSD9	84804	broad.mit.edu	36	2	102701461	102701461	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032718	exon6	c.C1275T	p.I425I	.	.	.
HPCAL1	3241	broad.mit.edu	36	2	10484311	10484311	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_134421	exon6	c.C495A	p.S165S	.	.	.
ODC1	4953	broad.mit.edu	36	2	10501731	10501731	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002539	exon5	c.G390T	p.M130I	.	.	.
GPR45	11250	broad.mit.edu	36	2	105224854	105224854	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007227	exon1	c.C107T	p.S36F	.	.	.
GPR45	11250	broad.mit.edu	36	2	105225184	105225184	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007227	exon1	c.G437A	p.R146H	.	.	.
FHL2	2274	broad.mit.edu	36	2	105344287	105344287	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201555	exon8	c.G725A	p.R242Q	.	.	.
UXS1	80146	broad.mit.edu	36	2	106128155	106128155	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025076	exon6	c.G380T	p.R127I	.	.	.
SLC5A7	60482	broad.mit.edu	36	2	107975870	107975870	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021815	exon4	c.C303A	p.F101L	.	.	.
SNTG2	54221	broad.mit.edu	36	2	1084066	1084066	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018968	exon4	c.G295A	p.V99I	.	.	.
GCC2	9648	broad.mit.edu	36	2	108453084	108453084	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181453	exon6	c.G867T	p.K289N	.	.	.
GCC2	9648	broad.mit.edu	36	2	108454867	108454867	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181453	exon6	c.G2650T	p.E884X	.	.	.
GCC2	9648	broad.mit.edu	36	2	108482590	108482590	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181453	exon22	c.G4932A	p.T1644T	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108735902	108735902	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006267	exon13	c.C1772A	p.S591Y	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108746181	108746181	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006267	exon20	c.G2754A	p.P918P	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108747118	108747118	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006267	exon20	c.C3691T	p.R1231C	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108747362	108747362	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006267	exon20	c.T3935C	p.V1312A	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108749334	108749334	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006267	exon20	c.G5907T	p.K1969N	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108749406	108749406	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006267	exon20	c.C5979T	p.S1993S	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108750559	108750559	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006267	exon20	c.T7132G	p.L2378V	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108750731	108750731	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006267	exon20	c.T7304G	p.I2435S	.	.	.
CCDC138	165055	broad.mit.edu	36	2	108770937	108770937	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144978	exon2	c.T111G	p.F37L	.	.	.
SEPT10	151011	broad.mit.edu	36	2	109661019	109661019	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178584	exon9	c.G1177T	p.E393X	.	.	.
SEPT10	151011	broad.mit.edu	36	2	109682742	109682742	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178584	exon5	c.T632C	p.V211A	.	.	.
NPHP1	4867	broad.mit.edu	36	2	110283320	110283320	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128178	exon6	c.G622T	p.E208X	.	.	.
ACOXL	55289	broad.mit.edu	36	2	111272696	111272696	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142807	exon6	c.G384T	p.K128N	.	.	.
PQLC3	130814	broad.mit.edu	36	2	11221827	11221827	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152391	exon4	c.G343T	p.D115Y	.	.	.
ANAPC1	64682	broad.mit.edu	36	2	112268933	112268933	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022662	exon35	c.G4306A	p.E1436K	.	.	.
MERTK	10461	broad.mit.edu	36	2	112468336	112468336	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006343	exon9	c.G1334A	p.R445Q	.	.	.
ROCK2	9475	broad.mit.edu	36	2	11251894	11251894	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004850	exon29	c.C3547T	p.L1183F	.	.	.
ROCK2	9475	broad.mit.edu	36	2	11256291	11256291	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004850	exon24	c.G2971T	p.E991X	.	.	.
ROCK2	9475	broad.mit.edu	36	2	11259649	11259649	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004850	exon21	c.G2599A	p.E867K	.	.	.
FBLN7	129804	broad.mit.edu	36	2	112633748	112633748	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153214	exon2	c.C100A	p.L34I	.	.	.
FBLN7	129804	broad.mit.edu	36	2	112639117	112639117	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153214	exon3	c.G304A	p.E102K	.	.	.
ROCK2	9475	broad.mit.edu	36	2	11269325	11269325	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004850	exon18	c.G2136T	p.K712N	.	.	.
ZC3H6	376940	broad.mit.edu	36	2	112785918	112785918	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198581	exon5	c.G680A	p.R227Q	.	.	.
ZC3H6	376940	broad.mit.edu	36	2	112805850	112805850	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198581	exon12	c.G2884T	p.D962Y	.	.	.
POLR1B	84172	broad.mit.edu	36	2	113049234	113049234	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001137604	exon14	c.G2697T	p.E899D	.	.	.
CKAP2L	150468	broad.mit.edu	36	2	113215054	113215054	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152515	exon8	c.G1824A	p.G608G	.	.	.
CKAP2L	150468	broad.mit.edu	36	2	113226449	113226449	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152515	exon5	c.A1468T	p.R490X	.	.	.
IL1B	3553	broad.mit.edu	36	2	113307571	113307571	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000576	exon4	c.G152A	p.R51Q	.	.	.
IL1F5	26525	broad.mit.edu	36	2	113534978	113534978	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012275	exon3	c.C108A	p.V36V	.	.	.
FOXD4L1	200350	broad.mit.edu	36	2	113973643	113973643	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012184	exon1	c.G340A	p.A114T	.	.	.
RABL2A	11159	broad.mit.edu	36	2	114115037	114115037	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007082	exon6	c.G394A	p.A132T	.	.	.
SLC35F5	80255	broad.mit.edu	36	2	114199508	114199508	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025181	exon12	c.C1167T	p.F389F	.	.	.
SLC35F5	80255	broad.mit.edu	36	2	114208710	114208710	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025181	exon9	c.C843A	p.T281T	.	.	.
ACTR3	10096	broad.mit.edu	36	2	114431436	114431436	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005721	exon12	c.A1191C	p.K397N	.	.	.
DPP10	57628	broad.mit.edu	36	2	115999980	115999980	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001178036	exon6	c.G253T	p.D85Y	.	.	.
DPP10	57628	broad.mit.edu	36	2	116310756	116310756	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001178036	exon25	c.G1996T	p.E666X	.	.	.
GREB1	9687	broad.mit.edu	36	2	11634096	11634096	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_148903	exon5	c.C621A	p.I207I	.	.	.
GREB1	9687	broad.mit.edu	36	2	11650564	11650564	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014668	exon11	c.C1557T	p.I519I	.	.	.
GREB1	9687	broad.mit.edu	36	2	11691714	11691714	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014668	exon29	c.C4998A	p.F1666L	.	.	.
NTSR2	23620	broad.mit.edu	36	2	11719629	11719629	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012344	exon2	c.C813A	p.T271T	.	.	.
DDX18	8886	broad.mit.edu	36	2	118298681	118298681	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006773	exon8	c.C1133A	p.S378Y	.	.	.
CCDC93	54520	broad.mit.edu	36	2	118423387	118423387	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019044	exon14	c.G1123T	p.E375X	.	.	.
LPIN1	23175	broad.mit.edu	36	2	11842497	11842497	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145693	exon9	c.G1285A	p.D429N	.	.	.
MARCO	8685	broad.mit.edu	36	2	119416365	119416365	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006770	exon1	c.C19A	p.L7I	.	.	.
MARCO	8685	broad.mit.edu	36	2	119467264	119467264	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006770	exon16	c.C1347T	p.D449D	.	.	.
PCDP1	200373	broad.mit.edu	36	2	120079249	120079249	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001029996	exon12	c.T189C	p.I63I	.	.	.
PCDP1	200373	broad.mit.edu	36	2	120101718	120101718	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001029996	exon17	c.C678A	p.F226L	.	.	.
TMEM177	80775	broad.mit.edu	36	2	120155072	120155072	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001105199	exon2	c.C173A	p.P58H	.	.	.
PTPN4	5775	broad.mit.edu	36	2	120356560	120356560	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002830	exon8	c.G478T	p.D160Y	.	.	.
PTPN4	5775	broad.mit.edu	36	2	120439613	120439613	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002830	exon25	c.C2480T	p.S827L	.	.	.
EPB41L5	57669	broad.mit.edu	36	2	120549535	120549535	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184937	exon6	c.C421A	p.L141I	.	.	.
RALB	5899	broad.mit.edu	36	2	120763634	120763634	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002881	exon4	c.T332C	p.I111T	.	.	.
RALB	5899	broad.mit.edu	36	2	120767273	120767273	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002881	exon5	c.G588T	p.K196N	.	.	.
CLASP1	23332	broad.mit.edu	36	2	121837337	121837337	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142274	exon35	c.C3886T	p.R1296X	.	.	.
SNTG2	54221	broad.mit.edu	36	2	1233742	1233742	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018968	exon12	c.C981A	p.S327S	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	124908608	124908608	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130773	exon5	c.G607T	p.D203Y	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	124920855	124920855	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130773	exon6	c.C789A	p.L263L	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	125238179	125238179	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130773	exon16	c.C2515T	p.R839X	.	.	.
ERCC3	2071	broad.mit.edu	36	2	127760835	127760835	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000122	exon8	c.G1256T	p.R419M	.	.	.
MAP3K2	10746	broad.mit.edu	36	2	127798018	127798018	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006609	exon10	c.G768T	p.E256D	.	.	.
TRIB2	28951	broad.mit.edu	36	2	12781122	12781122	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021643	exon2	c.G556A	p.E186K	.	.	.
TRIB2	28951	broad.mit.edu	36	2	12798284	12798284	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021643	exon3	c.G945A	p.S315S	.	.	.
MYO7B	4648	broad.mit.edu	36	2	128033772	128033772	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080527	exon2	c.C5T	p.S2L	.	.	.
WDR33	55339	broad.mit.edu	36	2	128182916	128182916	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018383	exon21	c.C3586T	p.R1196C	.	.	.
WDR33	55339	broad.mit.edu	36	2	128187646	128187646	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018383	exon18	c.C3289T	p.R1097X	.	.	.
WDR33	55339	broad.mit.edu	36	2	128244949	128244949	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018383	exon2	c.T77G	p.F26C	.	.	.
SAP130	79595	broad.mit.edu	36	2	128488850	128488850	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145928	exon5	c.C694T	p.R232X	.	.	.
UGGT1	56886	broad.mit.edu	36	2	128612837	128612837	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020120	exon16	c.G1660A	p.A554T	.	.	.
UGGT1	56886	broad.mit.edu	36	2	128635296	128635296	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020120	exon25	c.C2809T	p.R937W	.	.	.
UGGT1	56886	broad.mit.edu	36	2	128645304	128645304	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020120	exon28	c.A3080C	p.K1027T	.	.	.
UGGT1	56886	broad.mit.edu	36	2	128647889	128647889	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020120	exon30	c.A3359C	p.D1120A	.	.	.
POTEF	728378	broad.mit.edu	36	2	130594189	130594189	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099771	exon3	c.G370A	p.D124N	.	.	.
CCDC74B	91409	broad.mit.edu	36	2	130614408	130614408	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207310	exon5	c.G690T	p.E230D	.	.	.
TUBA3E	112714	broad.mit.edu	36	2	130669261	130669261	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207312	exon3	c.G236A	p.R79H	.	.	.
ARHGEF4	50649	broad.mit.edu	36	2	131405227	131405227	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015320	exon3	c.G227T	p.R76I	.	.	.
POTEE	445582	broad.mit.edu	36	2	131692565	131692565	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001083538	exon1	c.G120T	p.K40N	.	.	.
TUBA3D	113457	broad.mit.edu	36	2	131954464	131954464	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080386	exon4	c.G728A	p.R243Q	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133255122	133255122	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207363	exon15	c.C5022T	p.A1674A	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133255195	133255195	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207363	exon15	c.C4949A	p.S1650Y	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133256244	133256244	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207363	exon14	c.C4610T	p.A1537V	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133257444	133257444	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207363	exon14	c.C3410A	p.A1137D	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133258869	133258869	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207363	exon14	c.C1985A	p.S662Y	.	.	.
CCNT2	905	broad.mit.edu	36	2	135426718	135426718	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_058241	exon8	c.G741A	p.T247T	.	.	.
CCNT2	905	broad.mit.edu	36	2	135427799	135427799	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_058241	exon9	c.C1304A	p.S435Y	.	.	.
YSK4	80122	broad.mit.edu	36	2	135455324	135455324	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025052	exon9	c.A3457C	p.N1153H	YSK4,stomach,NS,Substitution - Missense,+1	.	.
YSK4	80122	broad.mit.edu	36	2	135457803	135457803	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025052	exon8	c.G3135T	p.K1045N	.	.	.
YSK4	80122	broad.mit.edu	36	2	135460754	135460754	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025052	exon7	c.A2158G	p.K720E	.	.	.
YSK4	80122	broad.mit.edu	36	2	135461926	135461926	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025052	exon7	c.C986A	p.S329Y	.	.	.
YSK4	80122	broad.mit.edu	36	2	135462205	135462205	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025052	exon7	c.G707T	p.R236I	.	.	.
RAB3GAP1	22930	broad.mit.edu	36	2	135567677	135567677	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012233	exon5	c.A306C	p.Q102H	.	.	.
RAB3GAP1	22930	broad.mit.edu	36	2	135589360	135589360	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012233	exon7	c.G587T	p.R196I	.	.	.
ZRANB3	84083	broad.mit.edu	36	2	135681842	135681842	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032143	exon19	c.C2641A	p.L881I	.	.	.
R3HDM1	23518	broad.mit.edu	36	2	136090732	136090732	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015361	exon5	c.C238T	p.R80W	.	.	.
R3HDM1	23518	broad.mit.edu	36	2	136113133	136113133	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015361	exon14	c.G1190T	p.S397I	.	.	.
LCT	3938	broad.mit.edu	36	2	136262401	136262401	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002299	exon17	c.G5747A	p.R1916Q	.	.	.
LCT	3938	broad.mit.edu	36	2	136282752	136282752	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002299	exon8	c.G3635T	p.R1212I	.	.	.
LCT	3938	broad.mit.edu	36	2	136283972	136283972	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002299	exon8	c.C2415T	p.F805F	.	.	.
LCT	3938	broad.mit.edu	36	2	136310739	136310739	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002299	exon1	c.C471T	p.F157F	.	.	.
MCM6	4175	broad.mit.edu	36	2	136330803	136330803	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005915	exon11	c.G1591A	p.D531N	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137530797	137530797	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080427	exon2	c.C384T	p.C128C	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137634300	137634300	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080427	exon5	c.C1324T	p.P442S	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137716514	137716514	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080427	exon9	c.G2075A	p.R692Q	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140771950	140771950	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018557	exon84	c.C12864A	p.V4288V	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140797950	140797950	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018557	exon81	c.C12496T	p.R4166C	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140838732	140838732	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018557	exon72	c.G11099T	p.G3700V	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140984050	140984050	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018557	exon52	c.G8315A	p.R2772H	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141000316	141000316	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018557	exon48	c.G7836T	p.Q2612H	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141008075	141008075	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018557	exon47	c.G7747A	p.E2583K	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141075559	141075559	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018557	exon42	c.G6919A	p.D2307N	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141324360	141324360	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018557	exon29	c.A4720G	p.K1574E	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141357899	141357899	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018557	exon25	c.G4126A	p.A1376T	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141463658	141463658	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018557	exon17	c.A2683G	p.N895D	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141703444	141703444	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018557	exon6	c.A628C	p.N210H	.	.	.
KYNU	8942	broad.mit.edu	36	2	143428877	143428877	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001032998	exon5	c.G402T	p.M134I	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144872345	144872345	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171653	exon7	c.G2807A	p.G936E	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144874267	144874267	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001171653	exon7	c.C885A	p.F295L	.	.	.
TPO	7173	broad.mit.edu	36	2	1478807	1478807	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175721	exon11	c.G2046T	p.Q682H	.	.	.
ACVR2A	92	broad.mit.edu	36	2	148389341	148389341	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001616	exon5	c.G640T	p.E214X	.	.	.
ACVR2A	92	broad.mit.edu	36	2	148401299	148401299	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001616	exon11	c.G1528T	p.E510X	.	.	.
MBD5	55777	broad.mit.edu	36	2	148963863	148963863	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018328	exon12	c.C3493T	p.R1165W	.	.	.
KIF5C	3800	broad.mit.edu	36	2	149396196	149396196	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004522	exon2	c.C147T	p.F49F	.	.	.
KIF5C	3800	broad.mit.edu	36	2	149511680	149511680	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004522	exon7	c.G539T	p.R180I	.	.	.
KIF5C	3800	broad.mit.edu	36	2	149514635	149514635	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004522	exon8	c.G679A	p.E227K	.	.	.
KIF5C	3800	broad.mit.edu	36	2	149526755	149526755	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004522	exon10	c.C921A	p.V307V	.	.	.
KIF5C	3800	broad.mit.edu	36	2	149546166	149546166	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004522	exon13	c.C1342T	p.R448C	.	.	.
KIF5C	3800	broad.mit.edu	36	2	149548460	149548460	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004522	exon14	c.C1578A	p.I526I	.	.	.
KIF5C	3800	broad.mit.edu	36	2	149572779	149572779	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004522	exon22	c.T2430G	p.I810M	.	.	.
LYPD6	130574	broad.mit.edu	36	2	150002562	150002562	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195685	exon2	c.G94T	p.D32Y	.	.	.
RND3	390	broad.mit.edu	36	2	151039699	151039699	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005168	exon4	c.C284T	p.S95L	.	.	.
NMI	9111	broad.mit.edu	36	2	151835525	151835525	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004688	exon8	c.G852T	p.K284N	.	.	.
RIF1	55183	broad.mit.edu	36	2	152028085	152028085	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001177664	exon30	c.G3805T	p.E1269X	.	.	.
RIF1	55183	broad.mit.edu	36	2	152028386	152028386	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001177664	exon30	c.A4106C	p.E1369A	.	.	.
NEB	4703	broad.mit.edu	36	2	152058127	152058127	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon176	c.G24751T	p.E8251X	.	.	.
NEB	4703	broad.mit.edu	36	2	152058943	152058943	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon174	c.G24557A	p.R8186H	.	.	.
NEB	4703	broad.mit.edu	36	2	152083771	152083771	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon155	c.C22649A	p.S7550Y	.	.	.
NEB	4703	broad.mit.edu	36	2	152084507	152084507	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon154	c.G22501A	p.D7501N	.	.	.
NEB	4703	broad.mit.edu	36	2	152089165	152089165	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon153	c.G22385T	p.R7462I	.	.	.
NEB	4703	broad.mit.edu	36	2	152090019	152090019	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon151	c.G22176T	p.K7392N	.	.	.
NEB	4703	broad.mit.edu	36	2	152098989	152098989	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon143	c.G21403A	p.D7135N	.	.	.
NEB	4703	broad.mit.edu	36	2	152127396	152127396	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon120	c.G18866A	p.R6289Q	.	.	.
NEB	4703	broad.mit.edu	36	2	152132212	152132212	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon114	c.C17872T	p.Q5958X	.	.	.
NEB	4703	broad.mit.edu	36	2	152180859	152180859	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon76	c.A11192C	p.K3731T	.	.	.
NEB	4703	broad.mit.edu	36	2	152209312	152209312	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon56	c.G7560T	p.E2520D	.	.	.
NEB	4703	broad.mit.edu	36	2	152210993	152210993	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon55	c.G7433A	p.R2478K	.	.	.
NEB	4703	broad.mit.edu	36	2	152227006	152227006	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon46	c.G5859T	p.E1953D	.	.	.
NEB	4703	broad.mit.edu	36	2	152262334	152262334	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon14	c.C1227T	p.L409L	.	.	.
NEB	4703	broad.mit.edu	36	2	152274455	152274455	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164507	exon12	c.G996T	p.E332D	.	.	.
ARL5A	26225	broad.mit.edu	36	2	152371681	152371681	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012097	exon5	c.G391T	p.E131X	.	.	.
STAM2	10254	broad.mit.edu	36	2	152714979	152714979	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005843	exon2	c.G51A	p.T17T	.	.	.
FMNL2	114793	broad.mit.edu	36	2	153113842	153113842	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052905	exon4	c.G344T	p.R115I	.	.	.
FMNL2	114793	broad.mit.edu	36	2	153190312	153190312	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052905	exon16	c.G1952A	p.R651Q	.	.	.
PRPF40A	55660	broad.mit.edu	36	2	153223752	153223752	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017892	exon24	c.T2524C	p.S842P	.	.	.
PRPF40A	55660	broad.mit.edu	36	2	153236080	153236080	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017892	exon14	c.C1432A	p.L478I	.	.	.
NBAS	51594	broad.mit.edu	36	2	15385868	15385868	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015909	exon37	c.C4367T	p.A1456V	.	.	.
NR4A2	4929	broad.mit.edu	36	2	156893290	156893290	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006186	exon4	c.G866A	p.R289H	.	.	.
GPD2	2820	broad.mit.edu	36	2	157134165	157134165	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001083112	exon11	c.A1345C	p.N449H	.	.	.
GALNT5	11227	broad.mit.edu	36	2	157823107	157823107	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014568	exon1	c.G267T	p.E89D	.	.	.
GALNT5	11227	broad.mit.edu	36	2	157823412	157823412	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014568	exon1	c.T572C	p.V191A	.	.	.
GALNT5	11227	broad.mit.edu	36	2	157824132	157824132	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014568	exon1	c.C1292A	p.S431Y	.	.	.
GALNT5	11227	broad.mit.edu	36	2	157865463	157865463	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014568	exon7	c.C2145A	p.I715I	.	.	.
ACVR1C	130399	broad.mit.edu	36	2	158105927	158105927	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001111031	exon7	c.C996A	p.I332I	.	.	.
ACVR1C	130399	broad.mit.edu	36	2	158107597	158107597	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001111031	exon6	c.G817T	p.D273Y	.	.	.
ACVR1	90	broad.mit.edu	36	2	158330876	158330876	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001111067	exon8	c.C869T	p.S290L	.	.	.
PKP4	8502	broad.mit.edu	36	2	159167842	159167842	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003628	exon4	c.C260A	p.S87X	.	.	.
PKP4	8502	broad.mit.edu	36	2	159245347	159245347	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003628	exon22	c.C3491T	p.S1164L	.	.	.
TANC1	85461	broad.mit.edu	36	2	159784074	159784074	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033394	exon21	c.C3458T	p.A1153V	.	.	.
TANC1	85461	broad.mit.edu	36	2	159793553	159793553	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033394	exon26	c.G4051A	p.D1351N	.	.	.
WDSUB1	151525	broad.mit.edu	36	2	159800793	159800793	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152528	exon11	c.G1428T	p.K476N	.	.	.
BAZ2B	29994	broad.mit.edu	36	2	159914644	159914644	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013450	exon28	c.C4684A	p.L1562I	.	.	.
BAZ2B	29994	broad.mit.edu	36	2	159949950	159949950	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013450	exon23	c.C3648A	p.F1216L	.	.	.
BAZ2B	29994	broad.mit.edu	36	2	159977176	159977176	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013450	exon14	c.C2593T	p.R865W	.	.	.
MYCN	4613	broad.mit.edu	36	2	15999737	15999737	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005378	exon2	c.G100T	p.D34Y	.	.	.
MYCN	4613	broad.mit.edu	36	2	16003393	16003393	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005378	exon3	c.G1118A	p.R373Q	.	.	.
LY75	4065	broad.mit.edu	36	2	160369857	160369857	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002349	exon35	c.C5113T	p.R1705X	.	.	.
LY75	4065	broad.mit.edu	36	2	160384550	160384550	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198760	exon29	c.C4086A	p.T1362T	.	.	.
PLA2R1	22925	broad.mit.edu	36	2	160514447	160514447	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007366	exon25	c.C3627T	p.C1209C	.	.	.
PLA2R1	22925	broad.mit.edu	36	2	160540851	160540851	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007366	exon17	c.G2569T	p.E857X	.	.	.
PLA2R1	22925	broad.mit.edu	36	2	160609598	160609598	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007366	exon2	c.G426A	p.R142R	.	.	.
TANK	10010	broad.mit.edu	36	2	161795782	161795782	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199135	exon7	c.C575T	p.A192V	.	.	.
TANK	10010	broad.mit.edu	36	2	161796118	161796118	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199135	exon7	c.A911C	p.K304T	.	.	.
TBR1	10716	broad.mit.edu	36	2	161982962	161982962	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006593	exon3	c.T852C	p.N284N	.	.	.
SLC4A10	57282	broad.mit.edu	36	2	162404583	162404583	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001178016	exon5	c.G349A	p.E117K	.	.	.
SLC4A10	57282	broad.mit.edu	36	2	162468863	162468863	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001178016	exon13	c.C1489A	p.L497I	.	.	.
SLC4A10	57282	broad.mit.edu	36	2	162529052	162529052	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001178016	exon22	c.C2967A	p.V989V	.	.	.
FAP	2191	broad.mit.edu	36	2	162737970	162737970	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004460	exon24	c.C2042A	p.T681N	.	.	.
KCNH7	90134	broad.mit.edu	36	2	162988148	162988148	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173162	exon8	c.C2077A	p.L693I	.	.	.
KCNH7	90134	broad.mit.edu	36	2	163000018	163000018	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173162	exon7	c.C1869T	p.F623F	.	.	.
KCNH7	90134	broad.mit.edu	36	2	163000248	163000248	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173162	exon7	c.C1639A	p.L547I	.	.	.
PXDN	7837	broad.mit.edu	36	2	1631003	1631004	+	Missense_Mutation	DNP	CG	TA	TA	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012293	exon17	c.3555_3556TA	.	.	.	.
PXDN	7837	broad.mit.edu	36	2	1632145	1632145	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012293	exon17	c.C2414T	p.T805M	.	.	.
KCNH7	90134	broad.mit.edu	36	2	163401496	163401496	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173162	exon2	c.G104T	p.R35I	.	.	.
KCNH7	90134	broad.mit.edu	36	2	163403209	163403209	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173162	exon1	c.T66G	p.F22L	.	.	.
PXDN	7837	broad.mit.edu	36	2	1636482	1636482	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012293	exon16	c.G2029T	p.E677X	.	.	.
GRB14	2888	broad.mit.edu	36	2	165062237	165062237	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004490	exon10	c.T1114C	p.S372P	.	.	.
GRB14	2888	broad.mit.edu	36	2	165091829	165091829	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004490	exon4	c.G544T	p.E182X	.	.	.
COBLL1	22837	broad.mit.edu	36	2	165260066	165260066	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014900	exon12	c.A2196C	p.K732N	.	.	.
COBLL1	22837	broad.mit.edu	36	2	165260521	165260521	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014900	exon12	c.G1741T	p.E581X	.	.	.
SLC38A11	151258	broad.mit.edu	36	2	165480684	165480684	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173512	exon6	c.T429C	p.I143I	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165677715	165677715	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006922	exon21	c.C3769A	p.L1257I	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165702865	165702865	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006922	exon15	c.G2161T	p.E721X	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165874166	165874166	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021007	exon6	c.C664T	p.L222F	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165909473	165909473	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040143	exon15	c.G2725T	p.E909X	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165919023	165919023	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040143	exon16	c.G2995A	p.E999K	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165919421	165919421	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040143	exon16	c.C3393T	p.S1131S	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165953385	165953385	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040143	exon26	c.G4823A	p.G1608E	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165953466	165953466	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040143	exon26	c.G4904A	p.R1635Q	.	.	.
CSRNP3	80034	broad.mit.edu	36	2	166244023	166244023	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172173	exon7	c.G1272T	p.K424N	.	.	.
TTC21B	79809	broad.mit.edu	36	2	166448616	166448616	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024753	exon26	c.T3618G	p.I1206M	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166600855	166600855	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001165964	exon16	c.T3294A	p.N1098K	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166606111	166606111	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001165964	exon13	c.T2207C	p.V736A	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166607105	166607105	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001165964	exon12	c.C2035A	p.P679T	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166609897	166609897	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001165964	exon10	c.A1564C	p.K522Q	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166623325	166623325	+	Splice_Site	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001165964	exon2	c.A384G	p.S128S	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166763463	166763463	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002977	exon27	c.G5899T	p.D1967Y	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166768746	166768746	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002977	exon26	c.T4706G	p.I1569S	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166841849	166841849	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002977	exon16	c.C2731T	p.R911C	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166849448	166849448	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002977	exon12	c.G1735T	p.G579X	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166851264	166851264	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002977	exon11	c.G1430T	p.R477I	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166858104	166858104	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002977	exon9	c.T990C	p.C330C	.	.	.
SCN7A	6332	broad.mit.edu	36	2	166971106	166971106	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002976	exon25	c.C4279A	p.L1427I	.	.	.
SCN7A	6332	broad.mit.edu	36	2	167042228	167042228	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002976	exon2	c.G225T	p.K75N	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167468637	167468637	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199143	exon2	c.C399T	p.Y133Y	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167804700	167804700	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199143	exon7	c.T1047G	p.I349M	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167808514	167808514	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199144	exon7	c.T1700G	p.I567S	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167810820	167810820	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199144	exon7	c.G4006T	p.D1336Y	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167811978	167811978	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199144	exon7	c.G5164A	p.V1722I	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167813170	167813170	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199144	exon7	c.T6356G	p.F2119C	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167814003	167814003	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199144	exon7	c.C7189T	p.R2397W	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167814683	167814683	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199144	exon7	c.G7869T	p.K2623N	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167814989	167814989	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199144	exon7	c.C8175A	p.F2725L	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167816444	167816444	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199144	exon7	c.G9630A	p.S3210S	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167823617	167823617	+	3'UTR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199143	exon11	c.C2414T	p.S805L	.	.	.
LASS6	253782	broad.mit.edu	36	2	169259793	169259793	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203463	exon6	c.G595T	p.D199Y	.	.	.
LASS6	253782	broad.mit.edu	36	2	169279761	169279761	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203463	exon7	c.T614G	p.F205C	.	.	.
NOSTRIN	115677	broad.mit.edu	36	2	169429619	169429619	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001171631	exon21	c.G1585T	p.E529X	.	.	.
G6PC2	57818	broad.mit.edu	36	2	169467214	169467214	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021176	exon2	c.C232A	p.H78N	.	.	.
ABCB11	8647	broad.mit.edu	36	2	169509402	169509402	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003742	exon21	c.T2569G	p.L857V	.	.	.
ABCB11	8647	broad.mit.edu	36	2	169558583	169558583	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003742	exon8	c.C667T	p.R223C	.	.	.
LRP2	4036	broad.mit.edu	36	2	169717666	169717666	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004525	exon67	c.G12350A	p.R4117H	.	.	.
LRP2	4036	broad.mit.edu	36	2	169733389	169733389	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004525	exon61	c.C11541T	p.F3847F	.	.	.
LRP2	4036	broad.mit.edu	36	2	169734545	169734545	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004525	exon60	c.C11410A	p.Q3804K	.	.	.
LRP2	4036	broad.mit.edu	36	2	169738768	169738768	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004525	exon56	c.C10921T	p.R3641W	.	.	.
LRP2	4036	broad.mit.edu	36	2	169785256	169785256	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004525	exon34	c.C5602A	p.L1868I	.	.	.
LRP2	4036	broad.mit.edu	36	2	169798308	169798308	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004525	exon30	c.G4957T	p.D1653Y	.	.	.
LRP2	4036	broad.mit.edu	36	2	169858976	169858976	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004525	exon6	c.G580A	p.E194K	.	.	.
KBTBD10	10324	broad.mit.edu	36	2	170074561	170074561	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006063	exon1	c.G27T	p.E9D	.	.	.
KBTBD10	10324	broad.mit.edu	36	2	170074740	170074740	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006063	exon1	c.C206T	p.A69V	.	.	.
KBTBD10	10324	broad.mit.edu	36	2	170075407	170075407	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006063	exon1	c.C873A	p.Y291X	.	.	.
KBTBD10	10324	broad.mit.edu	36	2	170079333	170079333	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006063	exon2	c.G1114A	p.D372N	.	.	.
FASTKD1	79675	broad.mit.edu	36	2	170111115	170111115	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024622	exon8	c.G1560T	p.M520I	.	.	.
C2orf77	129881	broad.mit.edu	36	2	170239745	170239745	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001085447	exon3	c.G346T	p.E116X	.	.	.
KLHL23	151230	broad.mit.edu	36	2	170300498	170300498	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199290	exon4	c.G728T	p.R243I	.	.	.
METTL5	29081	broad.mit.edu	36	2	170377257	170377257	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014168	exon6	c.C547T	p.R183X	.	.	.
METTL5	29081	broad.mit.edu	36	2	170385894	170385894	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014168	exon3	c.C360T	p.F120F	.	.	.
UBR3	130507	broad.mit.edu	36	2	170566168	170566168	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_172070	exon27	c.C4027T	p.R1343W	.	.	.
MYO3B	140469	broad.mit.edu	36	2	170779209	170779209	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001171642	exon4	c.G396T	p.M132I	.	.	.
MYO3B	140469	broad.mit.edu	36	2	170956289	170956289	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001171642	exon15	c.T1591G	p.F531V	.	.	.
MYO3B	140469	broad.mit.edu	36	2	170957206	170957206	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001171642	exon16	c.C1746T	p.F582F	.	.	.
MYO3B	140469	broad.mit.edu	36	2	170966437	170966437	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001171642	exon18	c.G2119A	p.E707K	.	.	.
MYO3B	140469	broad.mit.edu	36	2	170967658	170967658	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001171642	exon19	c.T2184A	p.N728K	.	.	.
GAD1	2571	broad.mit.edu	36	2	171410295	171410295	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000817	exon8	c.C785T	p.A262V	.	.	.
GORASP2	26003	broad.mit.edu	36	2	171519417	171519417	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015530	exon6	c.G578A	p.G193D	.	.	.
TLK1	9874	broad.mit.edu	36	2	171558684	171558684	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012290	exon21	c.G2153A	p.R718Q	.	.	.
TLK1	9874	broad.mit.edu	36	2	171571573	171571573	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012290	exon16	c.C1581A	p.F527L	.	.	.
TLK1	9874	broad.mit.edu	36	2	171614577	171614577	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012290	exon10	c.C973T	p.L325F	.	.	.
TLK1	9874	broad.mit.edu	36	2	171614831	171614831	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012290	exon9	c.C832T	p.L278F	.	.	.
DCAF17	80067	broad.mit.edu	36	2	172041651	172041651	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025000	exon11	c.C1127A	p.S376Y	.	.	.
CYBRD1	79901	broad.mit.edu	36	2	172106403	172106403	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024843	exon2	c.C256A	p.H86N	.	.	.
DYNC1I2	1781	broad.mit.edu	36	2	172292619	172292619	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001378	exon12	c.C1039A	p.L347I	.	.	.
SLC25A12	8604	broad.mit.edu	36	2	172409189	172409189	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003705	exon5	c.G401A	p.R134Q	.	.	.
HAT1	8520	broad.mit.edu	36	2	172490309	172490309	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003642	exon2	c.G24T	p.E8D	.	.	.
HAT1	8520	broad.mit.edu	36	2	172530212	172530212	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003642	exon5	c.C417T	p.F139F	.	.	.
ITGA6	3655	broad.mit.edu	36	2	173042207	173042207	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000210	exon4	c.G496T	p.D166Y	.	.	.
ITGA6	3655	broad.mit.edu	36	2	173064278	173064278	+	Silent	SNP	G	A	A	rs61757097	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000210	exon22	c.G2862A	p.S954S	.	.	.
PDK1	5163	broad.mit.edu	36	2	173168824	173168824	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002610	exon11	c.G1192T	p.E398X	.	.	.
ZAK	51776	broad.mit.edu	36	2	173742836	173742836	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016653	exon3	c.C217A	p.L73I	.	.	.
ZAK	51776	broad.mit.edu	36	2	173764016	173764016	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016653	exon7	c.C447A	p.I149I	.	.	.
ZAK	51776	broad.mit.edu	36	2	173794380	173794380	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133646	exon12	c.C1244A	p.S415Y	.	.	.
SP3	6670	broad.mit.edu	36	2	174528669	174528669	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172712	exon4	c.G808A	p.D270N	.	.	.
GPR155	151556	broad.mit.edu	36	2	175018147	175018147	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001033045	exon14	c.C2017A	p.L673I	.	.	.
GPR155	151556	broad.mit.edu	36	2	175041913	175041913	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001033045	exon6	c.T1155C	p.D385D	.	.	.
GPR155	151556	broad.mit.edu	36	2	175046182	175046182	+	Missense_Mutation	SNP	A	C	C	rs61735115	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001033045	exon4	c.T617G	p.I206S	.	.	.
WIPF1	7456	broad.mit.edu	36	2	175144706	175144706	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001077269	exon5	c.C1073A	p.P358H	.	.	.
WIPF1	7456	broad.mit.edu	36	2	175158515	175158515	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077269	exon2	c.G33A	p.P11P	.	.	.
CHRNA1	1134	broad.mit.edu	36	2	175332520	175332520	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000079	exon2	c.A131G	p.D44G	.	.	.
RAD51AP2	729475	broad.mit.edu	36	2	17560607	17560607	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099218	exon1	c.G2557T	p.D853Y	.	.	.
RAD51AP2	729475	broad.mit.edu	36	2	17561405	17561405	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099218	exon1	c.T1759G	p.L587V	.	.	.
RAD51AP2	729475	broad.mit.edu	36	2	17562080	17562080	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099218	exon1	c.G1084A	p.D362N	.	.	.
RAD51AP2	729475	broad.mit.edu	36	2	17562970	17562970	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099218	exon1	c.A194G	p.E65G	.	.	.
ATF2	1386	broad.mit.edu	36	2	175666172	175666172	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001880	exon12	c.G1048T	p.D350Y	.	.	.
KIAA1715	80856	broad.mit.edu	36	2	176543747	176543747	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030650	exon6	c.G348T	p.R116S	.	.	.
KIAA1715	80856	broad.mit.edu	36	2	176565374	176565374	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030650	exon4	c.G88T	p.E30X	.	.	.
HOXD10	3236	broad.mit.edu	36	2	176690318	176690318	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002148	exon1	c.G511A	p.E171K	.	.	.
HOXD9	3235	broad.mit.edu	36	2	176696993	176696993	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014213	exon2	c.G903T	p.E301D	.	.	.
HOXD9	3235	broad.mit.edu	36	2	176697128	176697128	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014213	exon2	c.G1038T	p.E346D	.	.	.
HOXD3	3232	broad.mit.edu	36	2	176744795	176744795	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006898	exon3	c.C846A	p.Y282X	.	.	.
HOXD1	3231	broad.mit.edu	36	2	176763085	176763085	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024501	exon2	c.G956A	p.G319D	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1774765	1774765	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015025	exon25	c.T3436G	p.F1146V	.	.	.
HNRNPA3	220988	broad.mit.edu	36	2	177789481	177789481	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_194247	exon5	c.G558T	p.Q186H	.	.	.
NFE2L2	4780	broad.mit.edu	36	2	177804045	177804045	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006164	exon5	c.C1532T	p.A511V	.	.	.
NFE2L2	4780	broad.mit.edu	36	2	177804439	177804439	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006164	exon5	c.G1138T	p.E380X	.	.	.
NFE2L2	4780	broad.mit.edu	36	2	177806255	177806255	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006164	exon3	c.C371T	p.A124V	.	.	.
AGPS	8540	broad.mit.edu	36	2	178010002	178010002	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003659	exon5	c.G611A	p.R204Q	.	.	.
TTC30B	150737	broad.mit.edu	36	2	178124095	178124095	+	Nonsense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152517	exon1	c.T1643A	p.L548X	.	.	.
TTC30B	150737	broad.mit.edu	36	2	178124390	178124390	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152517	exon1	c.T1348G	p.S450A	.	.	.
TTC30A	92104	broad.mit.edu	36	2	178190602	178190602	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152275	exon1	c.C1074T	p.L358L	.	.	.
PDE11A	50940	broad.mit.edu	36	2	178389883	178389883	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001077196	exon6	c.C324A	p.I108I	.	.	.
PDE11A	50940	broad.mit.edu	36	2	178413338	178413338	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001077196	exon3	c.G54T	p.E18D	.	.	.
PDE11A	50940	broad.mit.edu	36	2	178644841	178644841	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016953	exon1	c.C570T	p.I190I	.	.	.
RBM45	129831	broad.mit.edu	36	2	178696524	178696524	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152945	exon6	c.G883A	p.A295T	.	.	.
OSBPL6	114880	broad.mit.edu	36	2	178955472	178955472	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032523	exon16	c.C1613T	p.S538F	.	.	.
PRKRA	8575	broad.mit.edu	36	2	179017425	179017425	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001139517	exon3	c.G333T	p.K111N	.	.	.
PLEKHA3	65977	broad.mit.edu	36	2	179066938	179066938	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019091	exon4	c.G426T	p.E142D	.	.	.
TTN	7273	broad.mit.edu	36	2	179106225	179106225	+	Missense_Mutation	SNP	G	A	A	rs72629785	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon186	c.C76167T	p.N25389N	.	.	.
TTN	7273	broad.mit.edu	36	2	179108701	179108701	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon186	c.G73691A	p.G24564D	.	.	.
TTN	7273	broad.mit.edu	36	2	179112186	179112186	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon181	c.G71526A	p.S23842S	.	.	.
TTN	7273	broad.mit.edu	36	2	179112692	179112692	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon180	c.C71150T	p.A23717V	.	.	.
TTN	7273	broad.mit.edu	36	2	179112836	179112836	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon180	c.A71006G	p.Q23669R	.	.	.
TTN	7273	broad.mit.edu	36	2	179115249	179115249	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon177	c.C70284T	p.V23428V	.	.	.
TTN	7273	broad.mit.edu	36	2	179117186	179117186	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon173	c.G68820A	p.P22940P	.	.	.
TTN	7273	broad.mit.edu	36	2	179120505	179120505	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon167	c.G66898A	p.A22300T	.	.	.
TTN	7273	broad.mit.edu	36	2	179120625	179120625	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon167	c.C66778T	p.R22260C	.	.	.
TTN	7273	broad.mit.edu	36	2	179121768	179121768	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon167	c.G65635A	p.A21879T	.	.	.
TTN	7273	broad.mit.edu	36	2	179125338	179125338	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon163	c.C63339T	p.F21113F	.	.	.
TTN	7273	broad.mit.edu	36	2	179126163	179126163	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon163	c.C62514T	p.L20838L	.	.	.
TTN	7273	broad.mit.edu	36	2	179127585	179127585	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon160	c.G61539A	p.A20513A	.	.	.
TTN	7273	broad.mit.edu	36	2	179131019	179131019	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon156	c.A60112C	p.I20038L	.	.	.
TTN	7273	broad.mit.edu	36	2	179133127	179133127	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon154	c.A58782T	p.K19594N	.	.	.
TTN	7273	broad.mit.edu	36	2	179133476	179133476	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon154	c.G58433T	p.R19478M	.	.	.
TTN	7273	broad.mit.edu	36	2	179134080	179134080	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon154	c.C57829T	p.P19277S	.	.	.
TTN	7273	broad.mit.edu	36	2	179135043	179135043	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon154	c.C56866A	p.L18956I	.	.	.
TTN	7273	broad.mit.edu	36	2	179136003	179136003	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon154	c.G55906C	p.V18636L	.	.	.
TTN	7273	broad.mit.edu	36	2	179137222	179137222	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon154	c.C54687A	p.F18229L	.	.	.
TTN	7273	broad.mit.edu	36	2	179138600	179138600	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon154	c.C53309A	p.S17770Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179139551	179139551	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon154	c.G52358T	p.R17453I	.	.	.
TTN	7273	broad.mit.edu	36	2	179139769	179139769	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon154	c.C52140A	p.V17380V	.	.	.
TTN	7273	broad.mit.edu	36	2	179140147	179140147	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon154	c.T51762C	p.F17254F	.	.	.
TTN	7273	broad.mit.edu	36	2	179140258	179140258	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon154	c.G51651T	p.K17217N	.	.	.
TTN	7273	broad.mit.edu	36	2	179141014	179141014	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon154	c.G50895T	p.K16965N	.	.	.
TTN	7273	broad.mit.edu	36	2	179141733	179141733	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon154	c.C50176T	p.P16726S	.	.	.
TTN	7273	broad.mit.edu	36	2	179153315	179153315	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon145	c.C39841T	p.P13281S	.	.	.
TTN	7273	broad.mit.edu	36	2	179157337	179157337	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon139	c.G37991A	p.S12664N	.	.	.
TTN	7273	broad.mit.edu	36	2	179162821	179162821	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon132	c.G34681A	p.D11561N	.	.	.
TTN	7273	broad.mit.edu	36	2	179163565	179163565	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon132	c.C33937T	p.L11313L	.	.	.
TTN	7273	broad.mit.edu	36	2	179165483	179165483	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon129	c.G32299A	p.E10767K	.	.	.
TTN	7273	broad.mit.edu	36	2	179166001	179166001	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon128	c.C31895T	p.S10632L	.	.	.
TTN	7273	broad.mit.edu	36	2	179166790	179166790	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon126	c.G31287T	p.K10429N	.	.	.
TTN	7273	broad.mit.edu	36	2	179171009	179171009	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon121	c.G29938T	p.G9980X	.	.	.
TTN	7273	broad.mit.edu	36	2	179171884	179171884	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon119	c.G29603T	p.R9868I	.	.	.
TTN	7273	broad.mit.edu	36	2	179178229	179178229	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon108	c.G26725T	p.D8909Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179180054	179180054	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon106	c.G26325T	p.K8775N	.	.	.
TTN	7273	broad.mit.edu	36	2	179180238	179180238	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon106	c.A26141C	p.K8714T	.	.	.
TTN	7273	broad.mit.edu	36	2	179182521	179182521	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon101	c.G24566T	p.R8189I	.	.	.
TTN	7273	broad.mit.edu	36	2	179185108	179185108	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon95	c.G23080A	p.A7694T	.	.	.
TTN	7273	broad.mit.edu	36	2	179187126	179187126	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon90	c.T22048A	p.L7350I	.	.	.
TTN	7273	broad.mit.edu	36	2	179190126	179190126	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon83	c.A20646T	p.E6882D	.	.	.
TTN	7273	broad.mit.edu	36	2	179190811	179190811	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon81	c.C20317T	p.R6773X	.	.	.
TTN	7273	broad.mit.edu	36	2	179192980	179192980	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon77	c.G19214A	p.R6405H	.	.	.
TTN	7273	broad.mit.edu	36	2	179224475	179224475	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon161	c.A32195C	p.K10732T	.	.	.
TTN	7273	broad.mit.edu	36	2	179224672	179224672	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon160	c.C32127T	p.V10709V	.	.	.
TTN	7273	broad.mit.edu	36	2	179244126	179244126	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon151	c.G31341T	p.E10447D	.	.	.
TTN	7273	broad.mit.edu	36	2	179250818	179250818	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon143	c.G30334T	p.E10112X	.	.	.
TTN	7273	broad.mit.edu	36	2	179255718	179255718	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon132	c.C29313T	p.Y9771Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179258519	179258519	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon125	c.C28631A	p.S9544Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179279582	179279582	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon99	c.A25532C	p.K8511T	.	.	.
TTN	7273	broad.mit.edu	36	2	179279878	179279878	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon98	c.G25358T	p.R8453I	.	.	.
TTN	7273	broad.mit.edu	36	2	179283749	179283749	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon95	c.C24588T	p.G8196G	.	.	.
TTN	7273	broad.mit.edu	36	2	179285408	179285408	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon92	c.G23754A	p.T7918T	.	.	.
TTN	7273	broad.mit.edu	36	2	179287385	179287385	+	Nonsense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon88	c.T22629G	p.Y7543X	.	.	.
TTN	7273	broad.mit.edu	36	2	179287502	179287502	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon88	c.C22512T	p.V7504V	.	.	.
TTN	7273	broad.mit.edu	36	2	179292705	179292705	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon79	c.C20027T	p.A6676V	.	.	.
TTN	7273	broad.mit.edu	36	2	179293562	179293562	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon77	c.A19440G	p.E6480E	.	.	.
TTN	7273	broad.mit.edu	36	2	179296275	179296275	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon72	c.G17972T	p.R5991I	.	.	.
TTN	7273	broad.mit.edu	36	2	179301570	179301570	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon63	c.G15596T	p.R5199I	.	.	.
TTN	7273	broad.mit.edu	36	2	179304798	179304798	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon55	c.T13317C	p.Y4439Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179305483	179305483	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon53	c.C12818T	p.S4273L	.	.	.
TTN	7273	broad.mit.edu	36	2	179305577	179305577	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133378	exon53	c.G12724A	p.G4242S	.	.	.
TTN	7273	broad.mit.edu	36	2	179311179	179311179	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon46	c.G13157A	p.R4386Q	.	.	.
TTN	7273	broad.mit.edu	36	2	179312724	179312724	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon45	c.G12392T	p.R4131I	.	.	.
TTN	7273	broad.mit.edu	36	2	179313618	179313618	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon45	c.C11498A	p.S3833X	.	.	.
TTN	7273	broad.mit.edu	36	2	179314315	179314315	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003319	exon45	c.G10801T	p.E3601X	.	.	.
TTN	7273	broad.mit.edu	36	2	179320562	179320562	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133379	exon46	c.C14810T	p.S4937L	.	.	.
TTN	7273	broad.mit.edu	36	2	179320989	179320989	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133379	exon46	c.C14383T	p.P4795S	.	.	.
TTN	7273	broad.mit.edu	36	2	179321566	179321566	+	Intron	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133379	exon46	c.T13806C	p.Y4602Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179322206	179322206	+	Intron	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133379	exon46	c.T13166C	p.V4389A	.	.	.
TTN	7273	broad.mit.edu	36	2	179323089	179323089	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133379	exon46	c.G12283T	p.D4095Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179323512	179323512	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133379	exon46	c.G11860T	p.E3954X	.	.	.
TTN	7273	broad.mit.edu	36	2	179323911	179323911	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133379	exon46	c.G11461T	p.D3821Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179324214	179324214	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133379	exon46	c.C11158A	p.L3720I	.	.	.
TTN	7273	broad.mit.edu	36	2	179329510	179329510	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133437	exon44	c.G10425A	p.E3475E	.	.	.
TTN	7273	broad.mit.edu	36	2	179340890	179340890	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133379	exon40	c.G9312T	p.K3104N	.	.	.
TTN	7273	broad.mit.edu	36	2	179344302	179344302	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133379	exon34	c.G7997A	p.R2666K	.	.	.
TTN	7273	broad.mit.edu	36	2	179349470	179349470	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133379	exon28	c.C5366A	p.S1789Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179349985	179349985	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133379	exon28	c.C4851T	p.I1617I	.	.	.
TTN	7273	broad.mit.edu	36	2	179350684	179350684	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133379	exon25	c.T4472G	p.F1491C	.	.	.
TTN	7273	broad.mit.edu	36	2	179352257	179352257	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133379	exon23	c.C3907A	p.L1303I	.	.	.
TTN	7273	broad.mit.edu	36	2	179353102	179353102	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133379	exon22	c.C3599A	p.P1200H	.	.	.
TTN	7273	broad.mit.edu	36	2	179359080	179359080	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133379	exon14	c.A2110C	p.T704P	.	.	.
TTN	7273	broad.mit.edu	36	2	179373632	179373632	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133379	exon4	c.C318T	p.F106F	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179410152	179410152	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173648	exon23	c.G4039T	p.E1347X	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179418679	179418679	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173648	exon22	c.A3393C	p.E1131D	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179426487	179426487	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173648	exon20	c.A3170C	p.K1057T	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179429353	179429353	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173648	exon18	c.A2741C	p.K914T	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179441130	179441130	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173648	exon16	c.G2442A	p.P814P	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179442143	179442143	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173648	exon15	c.G2340T	p.Q780H	.	.	.
SESTD1	91404	broad.mit.edu	36	2	179682996	179682996	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178123	exon18	c.G1966A	p.E656K	.	.	.
SESTD1	91404	broad.mit.edu	36	2	179756110	179756110	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178123	exon3	c.G106A	p.E36K	.	.	.
ZNF385B	151126	broad.mit.edu	36	2	180117903	180117903	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001113397	exon2	c.C64T	p.R22C	.	.	.
ITGA4	3676	broad.mit.edu	36	2	182068875	182068875	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000885	exon14	c.C1506A	p.F502L	.	.	.
ITGA4	3676	broad.mit.edu	36	2	182104664	182104664	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000885	exon25	c.C2700A	p.F900L	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1822018	1822018	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015025	exon21	c.G2984T	p.W995L	.	.	.
NEUROD1	4760	broad.mit.edu	36	2	182251649	182251649	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002500	exon2	c.G184A	p.E62K	.	.	.
SSFA2	6744	broad.mit.edu	36	2	182482930	182482930	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006751	exon9	c.G1473A	p.T491T	.	.	.
PPP1R1C	151242	broad.mit.edu	36	2	182560863	182560863	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080545	exon2	c.A134G	p.N45S	.	.	.
PDE1A	5136	broad.mit.edu	36	2	182813125	182813125	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005019	exon3	c.C355T	p.R119W	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1834441	1834441	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015025	exon19	c.G2747A	p.G916D	.	.	.
NCKAP1	10787	broad.mit.edu	36	2	183575219	183575219	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013436	exon5	c.G393T	p.K131N	.	.	.
DUSP19	142679	broad.mit.edu	36	2	183660078	183660078	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080876	exon3	c.G339T	p.K113N	.	.	.
DUSP19	142679	broad.mit.edu	36	2	183668508	183668508	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080876	exon4	c.T531G	p.F177L	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185171986	185171986	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194250	exon1	c.C55T	p.R19C	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185509452	185509452	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194250	exon4	c.G1084T	p.V362F	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185510268	185510268	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194250	exon4	c.C1900A	p.L634I	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185511595	185511595	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194250	exon4	c.C3227T	p.P1076L	.	.	.
NT5C1B	93034	broad.mit.edu	36	2	18629330	18629330	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033253	exon4	c.C654T	p.Y218Y	.	.	.
FSIP2	401024	broad.mit.edu	36	2	186379073	186379073	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173651	exon17	c.G17062A	p.V5688I	.	.	.
FSIP2	401024	broad.mit.edu	36	2	186381042	186381042	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173651	exon17	c.C19031A	p.S6344Y	.	.	.
FSIP2	401024	broad.mit.edu	36	2	186381738	186381738	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173651	exon17	c.G19727T	p.R6576I	.	.	.
ITGAV	3685	broad.mit.edu	36	2	187229269	187229269	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144999	exon17	c.C1477T	p.R493X	.	.	.
ITGAV	3685	broad.mit.edu	36	2	187240699	187240699	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144999	exon24	c.A2246G	p.N749S	.	.	.
ITGAV	3685	broad.mit.edu	36	2	187248817	187248817	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144999	exon28	c.C2708A	p.S903Y	.	.	.
FAM171B	165215	broad.mit.edu	36	2	187334689	187334689	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_177454	exon8	c.G1375A	p.D459N	.	.	.
FAM171B	165215	broad.mit.edu	36	2	187335385	187335385	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_177454	exon8	c.G2071T	p.D691Y	.	.	.
ZSWIM2	151112	broad.mit.edu	36	2	187401464	187401464	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182521	exon9	c.C1394A	p.T465K	.	.	.
ZSWIM2	151112	broad.mit.edu	36	2	187410333	187410333	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182521	exon5	c.C688A	p.L230I	.	.	.
TFPI	7035	broad.mit.edu	36	2	188051723	188051723	+	Intron	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001032281	exon7	c.A681C	p.Q227H	.	.	.
TFPI	7035	broad.mit.edu	36	2	188076729	188076729	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006287	exon2	c.A12C	p.T4T	.	.	.
GULP1	51454	broad.mit.edu	36	2	189102134	189102134	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016315	exon6	c.T228G	p.I76M	.	.	.
COL3A1	1281	broad.mit.edu	36	2	189557832	189557832	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000090	exon2	c.C181A	p.L61I	.	.	.
COL5A2	1290	broad.mit.edu	36	2	189631821	189631821	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000393	exon32	c.G2129T	p.R710I	.	.	.
ANKAR	150709	broad.mit.edu	36	2	190292706	190292706	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144708	exon11	c.G2388A	p.E796E	.	.	.
ANKAR	150709	broad.mit.edu	36	2	190301037	190301037	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144708	exon13	c.C2846T	p.S949L	.	.	.
ANKAR	150709	broad.mit.edu	36	2	190311646	190311646	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144708	exon19	c.C3693A	p.V1231V	.	.	.
PMS1	5378	broad.mit.edu	36	2	190368812	190368812	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000534	exon3	c.A205C	p.M69L	.	.	.
STAT4	6775	broad.mit.edu	36	2	191627488	191627488	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003151	exon14	c.G1224C	p.K408N	.	.	.
STAT4	6775	broad.mit.edu	36	2	191721131	191721131	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003151	exon2	c.T44G	p.L15W	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191936804	191936804	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012223	exon10	c.C871T	p.R291X	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191966143	191966143	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012223	exon20	c.C2176A	p.L726I	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191973356	191973356	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012223	exon22	c.C2299T	p.R767X	.	.	.
TMEFF2	23671	broad.mit.edu	36	2	192526738	192526738	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016192	exon9	c.C940T	p.P314S	.	.	.
TMEFF2	23671	broad.mit.edu	36	2	192572115	192572115	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016192	exon6	c.T601C	p.S201P	.	.	.
SLC39A10	57181	broad.mit.edu	36	2	196253927	196253927	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001127257	exon2	c.C916T	p.R306X	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196344770	196344770	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018897	exon61	c.C11292T	p.F3764F	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196430389	196430389	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018897	exon44	c.G8371A	p.E2791K	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196445303	196445303	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018897	exon40	c.C6549T	p.F2183F	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196483008	196483008	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018897	exon25	c.A4092G	p.G1364G	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196499452	196499452	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018897	exon22	c.T3555C	p.C1185C	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196573804	196573804	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018897	exon12	c.C1222A	p.L408I	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196597430	196597430	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018897	exon8	c.G711T	p.K237N	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196620358	196620358	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018897	exon5	c.C361T	p.R121X	.	.	.
HECW2	57520	broad.mit.edu	36	2	196844196	196844196	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020760	exon17	c.C3301T	p.R1101C	.	.	.
CCDC150	284992	broad.mit.edu	36	2	197219370	197219370	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080539	exon2	c.G73A	p.A25T	.	.	.
CCDC150	284992	broad.mit.edu	36	2	197229733	197229733	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080539	exon3	c.G308A	p.R103Q	.	.	.
GTF3C3	9330	broad.mit.edu	36	2	197339575	197339575	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012086	exon17	c.T2497G	p.Y833D	.	.	.
GTF3C3	9330	broad.mit.edu	36	2	197358538	197358538	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012086	exon7	c.G913T	p.D305Y	.	.	.
PGAP1	80055	broad.mit.edu	36	2	197458842	197458842	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024989	exon11	c.A1181C	p.N394T	.	.	.
PGAP1	80055	broad.mit.edu	36	2	197489473	197489473	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024989	exon3	c.G391T	p.E131X	.	.	.
ANKRD44	91526	broad.mit.edu	36	2	197656454	197656454	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195144	exon14	c.G1341A	p.A447A	.	.	.
COQ10B	80219	broad.mit.edu	36	2	198033038	198033038	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025147	exon2	c.G242T	p.R81I	.	.	.
HSPD1	3329	broad.mit.edu	36	2	198061340	198061340	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002156	exon10	c.C1336T	p.R446X	.	.	.
MOBKL3	25843	broad.mit.edu	36	2	198123290	198123290	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199482	exon7	c.C385T	p.R129C	.	.	.
RFTN2	130132	broad.mit.edu	36	2	198248418	198248418	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144629	exon1	c.G10A	p.G4R	.	.	.
PLCL1	5334	broad.mit.edu	36	2	198656979	198656979	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006226	exon2	c.G493T	p.E165X	.	.	.
PLCL1	5334	broad.mit.edu	36	2	198657892	198657892	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006226	exon2	c.G1406A	p.R469Q	.	.	.
PLCL1	5334	broad.mit.edu	36	2	198658433	198658433	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006226	exon2	c.C1947T	p.I649I	.	.	.
PLCL1	5334	broad.mit.edu	36	2	198658752	198658752	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006226	exon2	c.G2266A	p.G756R	.	.	.
SATB2	23314	broad.mit.edu	36	2	199901760	199901760	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172509	exon8	c.G1292A	p.R431H	.	.	.
C2orf60	129450	broad.mit.edu	36	2	200506084	200506084	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039693	exon8	c.G899A	p.R300Q	.	.	.
KCTD18	130535	broad.mit.edu	36	2	201066216	201066216	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152387	exon6	c.G688T	p.E230X	.	.	.
SGOL2	151246	broad.mit.edu	36	2	201144849	201144849	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001160046	exon7	c.A1535C	p.K512T	.	.	.
SGOL2	151246	broad.mit.edu	36	2	201146515	201146515	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001160046	exon7	c.T3201G	p.C1067W	.	.	.
AOX1	316	broad.mit.edu	36	2	201232241	201232241	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001159	exon28	c.C3280A	p.L1094I	.	.	.
AOX1	316	broad.mit.edu	36	2	201241641	201241641	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001159	exon33	c.C3668A	p.S1223Y	.	.	.
CLK1	1195	broad.mit.edu	36	2	201430942	201430942	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001162407	exon6	c.T790G	p.F264V	.	.	.
FAM126B	285172	broad.mit.edu	36	2	201565302	201565302	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173822	exon10	c.C778A	p.L260I	.	.	.
CFLAR	8837	broad.mit.edu	36	2	201718392	201718392	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127183	exon6	c.G653A	p.G218D	.	.	.
CASP10	843	broad.mit.edu	36	2	201782099	201782099	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032974	exon9	c.G984A	p.T328T	.	.	.
ALS2CR12	130540	broad.mit.edu	36	2	201880568	201880568	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127391	exon11	c.C798T	p.F266F	.	.	.
TRAK2	66008	broad.mit.edu	36	2	201960715	201960715	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015049	exon13	c.G1652A	p.R551Q	.	.	.
STRADB	55437	broad.mit.edu	36	2	202051564	202051564	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018571	exon10	c.G1065T	p.E355D	.	.	.
ALS2CR11	151254	broad.mit.edu	36	2	202060705	202060705	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152525	exon15	c.G1747T	p.E583X	.	.	.
ALS2CR11	151254	broad.mit.edu	36	2	202144985	202144985	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152525	exon8	c.A757C	p.K253Q	.	.	.
ALS2CR11	151254	broad.mit.edu	36	2	202174734	202174734	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152525	exon4	c.C489T	p.F163F	.	.	.
ALS2CR4	65062	broad.mit.edu	36	2	202202815	202202815	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001044385	exon7	c.T559G	p.F187V	.	.	.
MPP4	58538	broad.mit.edu	36	2	202223044	202223044	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033066	exon19	c.C1471A	p.H491N	.	.	.
MPP4	58538	broad.mit.edu	36	2	202258917	202258917	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033066	exon6	c.T462C	p.I154I	.	.	.
ALS2	57679	broad.mit.edu	36	2	202297270	202297270	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020919	exon21	c.A3505G	p.I1169V	.	.	.
SDC1	6382	broad.mit.edu	36	2	20268601	20268601	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002997	exon2	c.C132A	p.F44L	.	.	.
BMPR2	659	broad.mit.edu	36	2	203087909	203087909	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001204	exon5	c.G583A	p.E195K	.	.	.
BMPR2	659	broad.mit.edu	36	2	203129010	203129010	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001204	exon12	c.A2377G	p.T793A	.	.	.
BMPR2	659	broad.mit.edu	36	2	203129452	203129452	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001204	exon12	c.C2819A	p.S940Y	.	.	.
PUM2	23369	broad.mit.edu	36	2	20317232	20317232	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015317	exon19	c.T2895C	p.T965T	.	.	.
ICA1L	130026	broad.mit.edu	36	2	203390401	203390401	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138468	exon7	c.G669A	p.S223S	.	.	.
ICA1L	130026	broad.mit.edu	36	2	203390464	203390464	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138468	exon7	c.G606T	p.K202N	.	.	.
PUM2	23369	broad.mit.edu	36	2	20353956	20353956	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015317	exon9	c.C1229T	p.A410V	.	.	.
PUM2	23369	broad.mit.edu	36	2	20371723	20371723	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015317	exon5	c.G622T	p.A208S	.	.	.
NBEAL1	65065	broad.mit.edu	36	2	203782250	203782250	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001114132	exon52	c.T7658C	p.I2553T	.	.	.
PUM2	23369	broad.mit.edu	36	2	20390600	20390600	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015317	exon1	c.G3T	p.M1I	.	.	.
ABI2	10152	broad.mit.edu	36	2	203953326	203953326	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005759	exon3	c.C436A	p.L146I	.	.	.
RAPH1	65059	broad.mit.edu	36	2	204062939	204062939	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203365	exon4	c.G345A	p.T115T	.	.	.
CD28	940	broad.mit.edu	36	2	204307857	204307857	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006139	exon4	c.G640A	p.D214N	.	.	.
CTLA4	1493	broad.mit.edu	36	2	204445681	204445681	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001037631	exon3	c.G463T	p.E155X	.	.	.
NRP2	8828	broad.mit.edu	36	2	206256269	206256269	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201266	exon1	c.T10C	p.F4L	.	.	.
NRP2	8828	broad.mit.edu	36	2	206295509	206295509	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201266	exon4	c.C496A	p.P166T	.	.	.
NRP2	8828	broad.mit.edu	36	2	206316458	206316458	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201266	exon9	c.C1578T	p.V526V	.	.	.
NRP2	8828	broad.mit.edu	36	2	206325845	206325845	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201266	exon12	c.G1945A	p.D649N	.	.	.
NRP2	8828	broad.mit.edu	36	2	206367799	206367799	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_201266	exon17	c.G2568T	p.K856N	.	.	.
NDUFS1	4719	broad.mit.edu	36	2	206699751	206699751	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005006	exon17	c.C1947A	p.V649V	.	.	.
GPR1	2825	broad.mit.edu	36	2	206749169	206749169	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001098199	exon3	c.C1048A	p.L350I	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206870249	206870249	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020923	exon4	c.G95T	p.R32I	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206878263	206878263	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020923	exon5	c.G766T	p.E256X	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206878908	206878908	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020923	exon5	c.G1411T	p.E471X	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206879432	206879432	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020923	exon5	c.G1935T	p.K645N	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206880684	206880684	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020923	exon5	c.G3187T	p.E1063X	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206881433	206881433	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020923	exon5	c.G3936T	p.E1312D	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206881656	206881656	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020923	exon5	c.G4159A	p.E1387K	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206881771	206881771	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020923	exon5	c.C4274A	p.S1425Y	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206882819	206882819	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020923	exon5	c.G5322T	p.K1774N	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206884201	206884201	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020923	exon5	c.G6704A	p.R2235H	.	.	.
DYTN	391475	broad.mit.edu	36	2	207224807	207224807	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001093730	exon12	c.G1717T	p.A573S	.	.	.
DYTN	391475	broad.mit.edu	36	2	207280394	207280394	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001093730	exon3	c.C173A	p.S58Y	.	.	.
MDH1B	130752	broad.mit.edu	36	2	207319379	207319379	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039845	exon8	c.G1233A	p.P411P	.	.	.
MDH1B	130752	broad.mit.edu	36	2	207328449	207328449	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039845	exon5	c.C439A	p.L147I	.	.	.
MDH1B	130752	broad.mit.edu	36	2	207333884	207333884	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039845	exon2	c.C121A	p.P41T	.	.	.
FASTKD2	22868	broad.mit.edu	36	2	207339862	207339862	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001136193	exon2	c.G200T	p.R67I	.	.	.
FASTKD2	22868	broad.mit.edu	36	2	207347233	207347233	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001136193	exon7	c.C1294T	p.R432X	.	.	.
FASTKD2	22868	broad.mit.edu	36	2	207361862	207361862	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001136193	exon10	c.G1888T	p.D630Y	.	.	.
C2orf43	60526	broad.mit.edu	36	2	20803356	20803356	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021925	exon5	c.C559T	p.R187X	.	.	.
FAM119A	151194	broad.mit.edu	36	2	208186037	208186037	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127395	exon4	c.G635T	p.R212I	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208899014	208899014	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015040	exon20	c.A3234G	p.R1078R	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208899262	208899262	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015040	exon20	c.G3482T	p.R1161I	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208918141	208918141	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015040	exon33	c.G5089A	p.E1697K	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208923021	208923021	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015040	exon36	c.G5403T	p.K1801N	.	.	.
PTH2R	5746	broad.mit.edu	36	2	209063611	209063611	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005048	exon12	c.T1218C	p.G406G	.	.	.
PTH2R	5746	broad.mit.edu	36	2	209066316	209066316	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005048	exon13	c.G1340T	p.R447I	.	.	.
MAP2	4133	broad.mit.edu	36	2	210268955	210268955	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002374	exon7	c.C3816A	p.T1272T	.	.	.
MAP2	4133	broad.mit.edu	36	2	210269995	210269995	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002374	exon9	c.C4497A	p.L1499L	.	.	.
C2orf67	151050	broad.mit.edu	36	2	210597119	210597119	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152519	exon14	c.T2616G	p.P872P	.	.	.
C2orf67	151050	broad.mit.edu	36	2	210726819	210726819	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152519	exon2	c.T733G	p.L245V	.	.	.
ACADL	33	broad.mit.edu	36	2	210793700	210793700	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001608	exon2	c.G149A	p.R50Q	.	.	.
APOB	338	broad.mit.edu	36	2	21081767	21081767	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000384	exon26	c.G11478A	p.T3826T	.	.	.
APOB	338	broad.mit.edu	36	2	21082732	21082732	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000384	exon26	c.C10513A	p.L3505I	.	.	.
APOB	338	broad.mit.edu	36	2	21084138	21084138	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000384	exon26	c.C9107A	p.S3036Y	.	.	.
APOB	338	broad.mit.edu	36	2	21087110	21087110	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000384	exon26	c.C6135A	p.A2045A	.	.	.
APOB	338	broad.mit.edu	36	2	21087629	21087629	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000384	exon26	c.C5616T	p.I1872I	.	.	.
APOB	338	broad.mit.edu	36	2	21089756	21089756	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000384	exon25	c.C3997T	p.R1333X	.	.	.
APOB	338	broad.mit.edu	36	2	21104861	21104861	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000384	exon13	c.C1672T	p.R558X	.	.	.
CPS1	1373	broad.mit.edu	36	2	211129717	211129717	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001875	exon1	c.G15T	p.L5F	.	.	.
CPS1	1373	broad.mit.edu	36	2	211175275	211175275	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001122634	exon6	c.G459T	p.E153D	.	.	.
CPS1	1373	broad.mit.edu	36	2	211181497	211181497	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001122634	exon9	c.G1007A	p.R336Q	.	.	.
APOB	338	broad.mit.edu	36	2	21118847	21118847	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000384	exon3	c.C128T	p.A43V	.	.	.
CPS1	1373	broad.mit.edu	36	2	211227036	211227036	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001122634	exon19	c.G2170T	p.E724X	.	.	.
CPS1	1373	broad.mit.edu	36	2	211233526	211233526	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001122634	exon22	c.G2476T	p.D826Y	.	.	.
ERBB4	2066	broad.mit.edu	36	2	211959994	211959994	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005235	exon27	c.G3310T	p.D1104Y	.	.	.
ERBB4	2066	broad.mit.edu	36	2	211960082	211960082	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005235	exon27	c.A3222G	p.E1074E	.	.	.
ERBB4	2066	broad.mit.edu	36	2	211997209	211997209	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005235	exon23	c.G2782T	p.E928X	.	.	.
SPAG16	79582	broad.mit.edu	36	2	213870300	213870300	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001025436	exon3	c.G253T	p.E85X	.	.	.
SPAG16	79582	broad.mit.edu	36	2	213913181	213913181	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024532	exon6	c.C586T	p.R196X	.	.	.
VWC2L	402117	broad.mit.edu	36	2	214987507	214987507	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080500	exon2	c.C345A	p.F115L	.	.	.
BARD1	580	broad.mit.edu	36	2	215353984	215353984	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000465	exon4	c.G859T	p.E287X	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215510548	215510548	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173076	exon51	c.G7473T	p.K2491N	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215518047	215518047	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173076	exon49	c.G7266A	p.P2422P	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215529703	215529703	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173076	exon42	c.G6162A	p.A2054A	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215531407	215531407	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173076	exon41	c.G5956A	p.D1986N	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215532022	215532022	+	Nonsense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173076	exon40	c.T5910G	p.Y1970X	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215547811	215547811	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173076	exon35	c.G5404A	p.A1802T	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215555191	215555191	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173076	exon30	c.G4544A	p.R1515Q	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215555342	215555342	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173076	exon30	c.G4393T	p.D1465Y	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215574687	215574687	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173076	exon21	c.A2703C	p.L901F	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215583411	215583411	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173076	exon18	c.C2361T	p.D787D	.	.	.
FN1	2335	broad.mit.edu	36	2	215946362	215946362	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_212476	exon37	c.G5632A	p.E1878K	.	.	.
FN1	2335	broad.mit.edu	36	2	215948291	215948291	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_212476	exon36	c.G5505A	p.P1835P	.	.	.
FN1	2335	broad.mit.edu	36	2	215980146	215980146	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_212476	exon18	c.G2662T	p.E888X	.	.	.
SMARCAL1	50485	broad.mit.edu	36	2	217048282	217048282	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014140	exon15	c.C2290T	p.R764W	.	.	.
TNS1	7145	broad.mit.edu	36	2	218383271	218383271	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022648	exon29	c.G4737A	p.S1579S	.	.	.
TNS1	7145	broad.mit.edu	36	2	218386184	218386184	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022648	exon27	c.C4641T	p.F1547F	.	.	.
TNS1	7145	broad.mit.edu	36	2	218387896	218387896	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022648	exon25	c.G4401T	p.E1467D	.	.	.
TNS1	7145	broad.mit.edu	36	2	218390878	218390878	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022648	exon24	c.G4110A	p.P1370P	.	.	.
TNS1	7145	broad.mit.edu	36	2	218453902	218453902	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022648	exon16	c.G1018A	p.D340N	.	.	.
CXCR2	3579	broad.mit.edu	36	2	218707827	218707827	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001557	exon3	c.C58A	p.L20I	.	.	.
ARPC2	10109	broad.mit.edu	36	2	218811797	218811797	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005731	exon5	c.A434G	p.H145R	.	.	.
C2orf62	375307	broad.mit.edu	36	2	218935724	218935724	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198559	exon6	c.C485A	p.S162Y	.	.	.
TTLL4	9654	broad.mit.edu	36	2	219320106	219320106	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014640	exon9	c.A2111C	p.K704T	.	.	.
TTLL4	9654	broad.mit.edu	36	2	219327104	219327104	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014640	exon20	c.A3348G	p.K1116K	.	.	.
PRKAG3	53632	broad.mit.edu	36	2	219402995	219402995	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017431	exon4	c.G583A	p.D195N	.	.	.
CCDC108	255101	broad.mit.edu	36	2	219600759	219600759	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194302	exon13	c.C2068T	p.R690X	.	.	.
CCDC108	255101	broad.mit.edu	36	2	219602452	219602452	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194302	exon11	c.G1567A	p.A523T	.	.	.
NHEJ1	79840	broad.mit.edu	36	2	219720626	219720626	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024782	exon4	c.C526T	p.R176X	.	.	.
SLC23A3	151295	broad.mit.edu	36	2	219734965	219734965	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001144890	exon12	c.C1767A	p.S589S	.	.	.
ABCB6	10058	broad.mit.edu	36	2	219787361	219787361	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005689	exon7	c.C1380T	p.F460F	.	.	.
ABCB6	10058	broad.mit.edu	36	2	219791104	219791104	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005689	exon1	c.A536C	p.D179A	.	.	.
ATG9A	79065	broad.mit.edu	36	2	219795629	219795629	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024085	exon10	c.C1830A	p.S610S	.	.	.
STK16	8576	broad.mit.edu	36	2	219819685	219819685	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008910	exon3	c.G149A	p.R50Q	.	.	.
TUBA4A	7277	broad.mit.edu	36	2	219824614	219824614	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006000	exon3	c.G292A	p.D98N	.	.	.
OBSL1	23363	broad.mit.edu	36	2	220140899	220140899	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001173431	exon3	c.T1319G	p.V440G	.	.	.
SLC4A3	6508	broad.mit.edu	36	2	220206260	220206260	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005070	exon10	c.A1298G	p.D433G	.	.	.
SLC4A3	6508	broad.mit.edu	36	2	220214646	220214646	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005070	exon23	c.C3651T	p.F1217F	.	.	.
EPHA4	2043	broad.mit.edu	36	2	222029706	222029706	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004438	exon7	c.C1474T	p.R492W	.	.	.
SGPP2	130367	broad.mit.edu	36	2	223094787	223094787	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152386	exon3	c.T436C	p.S146P	.	.	.
SGPP2	130367	broad.mit.edu	36	2	223131676	223131676	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152386	exon5	c.C1015T	p.R339C	.	.	.
FARSB	10056	broad.mit.edu	36	2	223215960	223215960	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005687	exon3	c.G123T	p.E41D	.	.	.
SCG2	7857	broad.mit.edu	36	2	224171435	224171435	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003469	exon2	c.G810T	p.E270D	.	.	.
SCG2	7857	broad.mit.edu	36	2	224171743	224171743	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003469	exon2	c.C502T	p.P168S	.	.	.
SCG2	7857	broad.mit.edu	36	2	224171910	224171910	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003469	exon2	c.G335T	p.R112I	.	.	.
WDFY1	57590	broad.mit.edu	36	2	224468584	224468584	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020830	exon7	c.C606T	p.V202V	.	.	.
MRPL44	65080	broad.mit.edu	36	2	224532857	224532857	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022915	exon2	c.G542A	p.S181N	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225351240	225351240	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014689	exon51	c.T5661G	p.F1887L	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225378172	225378172	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014689	exon36	c.C4046T	p.S1349L	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225504626	225504626	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014689	exon2	c.G127T	p.E43X	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226086362	226086362	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020864	exon3	c.G253T	p.G85X	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226155238	226155238	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020864	exon4	c.C861T	p.F287F	.	.	.
IRS1	3667	broad.mit.edu	36	2	227368023	227368023	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005544	exon1	c.T3676G	p.L1226V	.	.	.
IRS1	3667	broad.mit.edu	36	2	227369172	227369172	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005544	exon1	c.C2527T	p.R843X	.	.	.
RHBDD1	84236	broad.mit.edu	36	2	227437943	227437943	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001167608	exon4	c.G290T	p.R97I	.	.	.
COL4A4	1286	broad.mit.edu	36	2	227616091	227616091	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000092	exon36	c.G3343T	p.G1115X	.	.	.
COL4A4	1286	broad.mit.edu	36	2	227650985	227650985	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000092	exon25	c.G1856A	p.G619D	.	.	.
COL4A3	1285	broad.mit.edu	36	2	227855340	227855340	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000091	exon32	c.C2504T	p.T835M	.	.	.
MFF	56947	broad.mit.edu	36	2	227913306	227913306	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020194	exon6	c.C484T	p.R162C	.	.	.
WDR69	164781	broad.mit.edu	36	2	228458340	228458340	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178821	exon2	c.G70T	p.E24X	.	.	.
WDR69	164781	broad.mit.edu	36	2	228462878	228462878	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178821	exon3	c.G176A	p.R59Q	.	.	.
WDR69	164781	broad.mit.edu	36	2	228466766	228466766	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178821	exon5	c.G329T	p.G110V	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228554704	228554704	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142644	exon12	c.C5076A	p.L1692L	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228589435	228589435	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142644	exon7	c.C4379T	p.S1460L	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228590244	228590244	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142644	exon7	c.C3570A	p.I1190I	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228591828	228591828	+	Silent	SNP	G	A	A	rs61752224	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142644	exon7	c.C1986T	p.V662V	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228594738	228594738	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142644	exon6	c.C630T	p.I210I	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228598368	228598368	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142644	exon5	c.T427G	p.F143V	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228681893	228681893	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142644	exon3	c.C145T	p.R49C	.	.	.
DNER	92737	broad.mit.edu	36	2	229939948	229939948	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139072	exon12	c.C1987T	p.R663C	.	.	.
DNER	92737	broad.mit.edu	36	2	230164585	230164585	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139072	exon2	c.G540A	p.P180P	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230380799	230380799	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004238	exon16	c.G2221T	p.E741X	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230388105	230388105	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004238	exon10	c.G1541A	p.R514Q	.	.	.
SLC16A14	151473	broad.mit.edu	36	2	230618853	230618853	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152527	exon4	c.C1233A	p.I411I	.	.	.
SLC16A14	151473	broad.mit.edu	36	2	230619146	230619146	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152527	exon4	c.C940T	p.R314X	.	.	.
SP140	11262	broad.mit.edu	36	2	230810054	230810054	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007237	exon2	c.G72T	p.E24D	.	.	.
SP140	11262	broad.mit.edu	36	2	230810165	230810165	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007237	exon2	c.T183C	p.F61F	.	.	.
SP140	11262	broad.mit.edu	36	2	230821848	230821848	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007237	exon9	c.C897A	p.T299T	.	.	.
SP140	11262	broad.mit.edu	36	2	230882939	230882939	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007237	exon23	c.C2115T	p.C705C	.	.	.
SP140L	93349	broad.mit.edu	36	2	230901735	230901735	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138402	exon2	c.T52G	p.S18A	.	.	.
SP140L	93349	broad.mit.edu	36	2	230932058	230932058	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_138402	exon4	c.G406A	p.D136N	.	.	.
CAB39	51719	broad.mit.edu	36	2	231363884	231363884	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130850	exon3	c.C168T	p.G56G	.	.	.
PSMD1	5707	broad.mit.edu	36	2	231635477	231635477	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002807	exon4	c.G148A	p.E50K	.	.	.
PSMD1	5707	broad.mit.edu	36	2	231643052	231643052	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002807	exon6	c.C580T	p.R194W	.	.	.
PSMD1	5707	broad.mit.edu	36	2	231653122	231653122	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002807	exon12	c.G1263T	p.Q421H	.	.	.
ARMC9	80210	broad.mit.edu	36	2	231779208	231779208	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025139	exon2	c.C13A	p.L5M	.	.	.
ARMC9	80210	broad.mit.edu	36	2	231799736	231799736	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025139	exon7	c.G603T	p.E201D	.	.	.
B3GNT7	93010	broad.mit.edu	36	2	231971071	231971071	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145236	exon2	c.G397A	p.D133N	.	.	.
B3GNT7	93010	broad.mit.edu	36	2	231971492	231971492	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145236	exon2	c.G818T	p.R273L	.	.	.
NCL	4691	broad.mit.edu	36	2	232032008	232032008	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005381	exon7	c.C1113A	p.V371V	.	.	.
DIS3L2	129563	broad.mit.edu	36	2	232602973	232602973	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152383	exon5	c.G305A	p.R102H	.	.	.
DIS3L2	129563	broad.mit.edu	36	2	232660455	232660455	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152383	exon6	c.G381T	p.E127D	.	.	.
DIS3L2	129563	broad.mit.edu	36	2	232709642	232709642	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152383	exon8	c.G919T	p.D307Y	.	.	.
ALPPL2	251	broad.mit.edu	36	2	232980117	232980117	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031313	exon2	c.C174A	p.F58L	.	.	.
ECEL1	9427	broad.mit.edu	36	2	233057476	233057476	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004826	exon6	c.G1134A	p.A378A	.	.	.
CHRNG	1146	broad.mit.edu	36	2	233117430	233117430	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005199	exon10	c.C1145T	p.S382L	.	.	.
EIF4E2	9470	broad.mit.edu	36	2	233137273	233137273	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004846	exon4	c.C343A	p.L115I	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233333472	233333472	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001103148	exon6	c.T418G	p.F140V	.	.	.
KCNJ13	3769	broad.mit.edu	36	2	233341731	233341731	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002242	exon3	c.G497A	p.R166Q	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233405859	233405859	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001103148	exon21	c.C2560T	p.R854X	.	.	.
DGKD	8527	broad.mit.edu	36	2	234033232	234033232	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152879	exon23	c.C2785T	p.R929W	.	.	.
UGT1A9	54600	broad.mit.edu	36	2	234245984	234245984	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021027	exon1	c.G665A	p.R222H	.	.	.
UGT1A6	54578	broad.mit.edu	36	2	234267246	234267246	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001072	exon1	c.C857T	p.S286F	.	.	.
UGT1A3	54659	broad.mit.edu	36	2	234302970	234302970	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019093	exon1	c.C459T	p.P153P	.	.	.
HJURP	55355	broad.mit.edu	36	2	234414381	234414381	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018410	exon8	c.C1784A	p.S595Y	.	.	.
HJURP	55355	broad.mit.edu	36	2	234415087	234415087	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018410	exon8	c.C1078A	p.L360I	.	.	.
TRPM8	79054	broad.mit.edu	36	2	234510845	234510845	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024080	exon4	c.G301A	p.D101N	.	.	.
TRPM8	79054	broad.mit.edu	36	2	234512521	234512521	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024080	exon5	c.G489T	p.K163N	.	.	.
TRPM8	79054	broad.mit.edu	36	2	234523394	234523394	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024080	exon9	c.C1005T	p.I335I	.	.	.
TRPM8	79054	broad.mit.edu	36	2	234556551	234556551	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024080	exon20	c.C2705T	p.S902L	.	.	.
TRPM8	79054	broad.mit.edu	36	2	234581464	234581464	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024080	exon24	c.G3242A	p.R1081Q	.	.	.
SPP2	6694	broad.mit.edu	36	2	234624431	234624431	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006944	exon2	c.T163C	p.S55P	.	.	.
AGAP1	116987	broad.mit.edu	36	2	236372834	236372834	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001037131	exon8	c.G886A	p.D296N	.	.	.
ASB18	401036	broad.mit.edu	36	2	236814769	236814769	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_212556	exon2	c.T221C	p.L74P	.	.	.
IQCA1	79781	broad.mit.edu	36	2	236937191	236937191	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024726	exon15	c.C1840T	p.L614F	.	.	.
IQCA1	79781	broad.mit.edu	36	2	237067251	237067251	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024726	exon3	c.A355G	p.I119V	.	.	.
CXCR7	57007	broad.mit.edu	36	2	237154187	237154187	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020311	exon2	c.G340A	p.E114K	.	.	.
CXCR7	57007	broad.mit.edu	36	2	237154329	237154329	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020311	exon2	c.G482A	p.R161H	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237908224	237908224	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_057166	exon38	c.G7192A	p.A2398T	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237909656	237909656	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_057166	exon37	c.G7005A	p.A2335A	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237909842	237909842	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_057166	exon37	c.G6819A	p.T2273T	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237913924	237913924	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_057166	exon35	c.G6553A	p.D2185N	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237914443	237914443	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_057166	exon35	c.G6034A	p.D2012N	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237939381	237939381	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_057166	exon9	c.C3716A	p.S1239Y	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237950717	237950717	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_057166	exon4	c.G686A	p.R229Q	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237954402	237954402	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_057166	exon3	c.G571A	p.D191N	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237961411	237961411	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_057167	exon3	c.G247T	p.E83X	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237961489	237961489	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_057167	exon3	c.G169A	p.D57N	.	.	.
ATAD2B	54454	broad.mit.edu	36	2	23831101	23831101	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017552	exon26	c.A4126C	p.K1376Q	.	.	.
LRRFIP1	9208	broad.mit.edu	36	2	238336019	238336019	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001137552	exon11	c.C924T	p.I308I	.	.	.
RBM44	375316	broad.mit.edu	36	2	238391168	238391168	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080504	exon3	c.G870T	p.M290I	.	.	.
RBM44	375316	broad.mit.edu	36	2	238391776	238391776	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080504	exon3	c.C1478A	p.S493Y	.	.	.
SCLY	51540	broad.mit.edu	36	2	238655577	238655577	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016510	exon6	c.C765T	p.I255I	.	.	.
ILKAP	80895	broad.mit.edu	36	2	238744048	238744048	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030768	exon12	c.G1047T	p.K349N	.	.	.
ILKAP	80895	broad.mit.edu	36	2	238758662	238758662	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030768	exon6	c.G431A	p.R144Q	.	.	.
ILKAP	80895	broad.mit.edu	36	2	238761539	238761539	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030768	exon5	c.G397A	p.E133K	.	.	.
ATAD2B	54454	broad.mit.edu	36	2	23899635	23899635	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017552	exon16	c.G2128T	p.E710X	.	.	.
ATAD2B	54454	broad.mit.edu	36	2	23905309	23905309	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017552	exon15	c.G1733T	p.R578I	.	.	.
ATAD2B	54454	broad.mit.edu	36	2	23957033	23957033	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017552	exon7	c.G881A	p.R294Q	.	.	.
ATAD2B	54454	broad.mit.edu	36	2	23964254	23964254	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017552	exon4	c.G524T	p.R175I	.	.	.
HDAC4	9759	broad.mit.edu	36	2	239726413	239726413	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006037	exon9	c.C882T	p.S294S	.	.	.
OR6B3	150681	broad.mit.edu	36	2	240634104	240634104	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173351	exon1	c.C59T	p.A20V	.	.	.
OTOS	150677	broad.mit.edu	36	2	240727327	240727327	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_148961	exon4	c.G203A	p.R68Q	.	.	.
C2orf44	80304	broad.mit.edu	36	2	24114784	24114784	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025203	exon2	c.A1085C	p.N362T	.	.	.
CAPN10	11132	broad.mit.edu	36	2	241177528	241177528	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023085	exon2	c.C237T	p.C79C	.	.	.
SF3B14	51639	broad.mit.edu	36	2	24144729	24144729	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016047	exon3	c.G254T	p.R85I	.	.	.
SNED1	25992	broad.mit.edu	36	2	241637149	241637149	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080437	exon11	c.C1542T	p.C514C	.	.	.
SNED1	25992	broad.mit.edu	36	2	241675542	241675542	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080437	exon30	c.G4184A	p.S1395N	.	.	.
MTERFD2	130916	broad.mit.edu	36	2	241687824	241687824	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182501	exon2	c.C180T	p.S60S	.	.	.
PASK	23178	broad.mit.edu	36	2	241703236	241703236	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015148	exon14	c.C3228A	p.F1076L	.	.	.
PPP1R7	5510	broad.mit.edu	36	2	241741628	241741628	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002712	exon2	c.C117T	p.I39I	.	.	.
PPP1R7	5510	broad.mit.edu	36	2	241748456	241748456	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002712	exon6	c.C471T	p.I157I	.	.	.
PPP1R7	5510	broad.mit.edu	36	2	241751416	241751416	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002712	exon7	c.T641G	p.F214C	.	.	.
PPP1R7	5510	broad.mit.edu	36	2	241770887	241770887	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002712	exon10	c.C1059T	p.I353I	.	.	.
ANO7	50636	broad.mit.edu	36	2	241789440	241789440	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001891	exon7	c.A771C	p.Q257H	.	.	.
ANO7	50636	broad.mit.edu	36	2	241811326	241811326	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001891	exon22	c.C2536A	p.L846I	.	.	.
HDLBP	3069	broad.mit.edu	36	2	241818348	241818348	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005336	exon26	c.C3484T	p.R1162C	.	.	.
FARP2	9855	broad.mit.edu	36	2	242056263	242056263	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014808	exon18	c.C1929T	p.V643V	.	.	.
C2orf85	285093	broad.mit.edu	36	2	242463818	242463818	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173821	exon2	c.G1438A	p.D480N	.	.	.
C2orf84	653140	broad.mit.edu	36	2	24266843	24266843	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040710	exon6	c.G460A	p.D154N	.	.	.
ITSN2	50618	broad.mit.edu	36	2	24352213	24352213	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019595	exon17	c.G1873T	p.E625X	.	.	.
ITSN2	50618	broad.mit.edu	36	2	24375094	24375094	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019595	exon13	c.G1438T	p.E480X	.	.	.
ITSN2	50618	broad.mit.edu	36	2	24380223	24380223	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019595	exon9	c.G806T	p.R269I	.	.	.
NCOA1	8648	broad.mit.edu	36	2	24815820	24815820	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003743	exon16	c.C3217T	p.R1073W	.	.	.
C2orf79	391356	broad.mit.edu	36	2	24869624	24869624	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001013663	exon1	c.C127T	p.P43S	.	.	.
CENPO	79172	broad.mit.edu	36	2	24893031	24893031	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199803	exon5	c.G589T	p.A197S	.	.	.
DNMT3A	1788	broad.mit.edu	36	2	25312172	25312172	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175629	exon22	c.G2505A	p.T835T	.	.	.
DNMT3A	1788	broad.mit.edu	36	2	25315561	25315561	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175629	exon20	c.G2350T	p.E784X	.	.	.
DTNB	1838	broad.mit.edu	36	2	25715443	25715443	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_183360	exon3	c.G92A	p.R31Q	.	.	.
ASXL2	55252	broad.mit.edu	36	2	25819045	25819045	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018263	exon12	c.C3665T	p.T1222I	.	.	.
HADHA	3030	broad.mit.edu	36	2	26286235	26286235	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000182	exon11	c.G1003T	p.E335X	.	.	.
EPT1	85465	broad.mit.edu	36	2	26461339	26461339	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033505	exon8	c.A740T	p.K247I	.	.	.
OTOF	9381	broad.mit.edu	36	2	26537301	26537301	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194323	exon27	c.T3334C	p.S1112P	.	.	.
KCNK3	3777	broad.mit.edu	36	2	26804430	26804430	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002246	exon2	c.C675T	p.F225F	.	.	.
TMEM214	54867	broad.mit.edu	36	2	27114025	27114025	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001083590	exon8	c.C968A	p.S323Y	.	.	.
C2orf28	51374	broad.mit.edu	36	2	27292968	27292968	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080592	exon6	c.C726A	p.F242L	.	.	.
CAD	790	broad.mit.edu	36	2	27319252	27319252	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004341	exon42	c.C6387T	p.F2129F	.	.	.
GTF3C2	2976	broad.mit.edu	36	2	27419384	27419384	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001035521	exon3	c.C382A	p.L128I	.	.	.
SNX17	9784	broad.mit.edu	36	2	27450298	27450298	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014748	exon5	c.C388A	p.L130M	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27653272	27653272	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032266	exon1	c.G329A	p.R110K	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27653598	27653598	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032266	exon1	c.A655C	p.K219Q	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27654062	27654062	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032266	exon1	c.G1119T	p.E373D	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27654831	27654831	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032266	exon1	c.A1888C	p.N630H	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27655971	27655971	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032266	exon1	c.G3028A	p.E1010K	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27656836	27656836	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032266	exon1	c.G3893T	p.R1298I	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27658186	27658186	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032266	exon1	c.G5243T	p.R1748I	.	.	.
ZNF512	84450	broad.mit.edu	36	2	27697532	27697532	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032434	exon14	c.C1404T	p.F468F	.	.	.
SLC4A1AP	22950	broad.mit.edu	36	2	27740800	27740800	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018158	exon1	c.G677A	p.S226N	.	.	.
BRE	9577	broad.mit.edu	36	2	28414868	28414868	+	3'UTR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199194	exon13	c.C1136T	p.A379V	.	.	.
FOSL2	2355	broad.mit.edu	36	2	28480623	28480623	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005253	exon2	c.G248T	p.S83I	.	.	.
SPDYA	245711	broad.mit.edu	36	2	28892472	28892472	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182756	exon3	c.A88C	p.K30Q	.	.	.
FAM179A	165186	broad.mit.edu	36	2	29079017	29079017	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199280	exon5	c.G539T	p.S180I	.	.	.
C2orf71	388939	broad.mit.edu	36	2	29147493	29147493	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001029883	exon1	c.C3139T	p.R1047X	.	.	.
C2orf71	388939	broad.mit.edu	36	2	29150030	29150030	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001029883	exon1	c.T602G	p.I201S	.	.	.
C2orf71	388939	broad.mit.edu	36	2	29150375	29150375	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001029883	exon1	c.G257A	p.R86K	.	.	.
ALK	238	broad.mit.edu	36	2	29269705	29269705	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004304	exon29	c.C4752T	p.Y1584Y	.	.	.
ALK	238	broad.mit.edu	36	2	29397232	29397232	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004304	exon7	c.T1435G	p.Y479D	.	.	.
ALK	238	broad.mit.edu	36	2	29460109	29460109	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004304	exon5	c.C1275T	p.C425C	.	.	.
ALK	238	broad.mit.edu	36	2	29460183	29460183	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004304	exon5	c.C1201T	p.R401X	ALK,ovary,NS,Substitution - Nonsense,0	.	.
LCLAT1	253558	broad.mit.edu	36	2	30716884	30716884	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182551	exon7	c.C1140A	p.I380I	.	.	.
CAPN13	92291	broad.mit.edu	36	2	30808866	30808866	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144575	exon20	c.C1869T	p.V623V	.	.	.
EHD3	30845	broad.mit.edu	36	2	31337263	31337263	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014600	exon4	c.G886A	p.D296N	.	.	.
SRD5A2	6716	broad.mit.edu	36	2	31607945	31607945	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000348	exon4	c.C633A	p.S211S	.	.	.
MEMO1	51072	broad.mit.edu	36	2	31947028	31947028	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015955	exon9	c.G800A	p.S267N	.	.	.
MEMO1	51072	broad.mit.edu	36	2	31948472	31948472	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015955	exon8	c.G711T	p.K237N	.	.	.
SPAST	6683	broad.mit.edu	36	2	32232959	32232959	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199436	exon16	c.C1645T	p.R549X	.	.	.
SLC30A6	55676	broad.mit.edu	36	2	32298810	32298810	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193513	exon15	c.C1030T	p.R344X	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32328377	32328377	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021209	exon4	c.C2060T	p.A687V	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32329212	32329212	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021209	exon4	c.G1225A	p.E409K	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32493868	32493868	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016252	exon10	c.G2005T	p.E669X	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32520934	32520934	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016252	exon19	c.G4145A	p.R1382Q	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32580315	32580315	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016252	exon47	c.A9063C	p.E3021D	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32603533	32603533	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016252	exon58	c.G11698T	p.E3900X	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32624401	32624401	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016252	exon63	c.A12780G	p.R4260R	.	.	.
TTC27	55622	broad.mit.edu	36	2	32836993	32836993	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193509	exon13	c.G1433A	p.R478H	.	.	.
TTC27	55622	broad.mit.edu	36	2	32891075	32891075	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193509	exon18	c.G2047A	p.A683T	.	.	.
TTC27	55622	broad.mit.edu	36	2	32896085	32896085	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001193509	exon19	c.C2216A	p.S739Y	.	.	.
LTBP1	4052	broad.mit.edu	36	2	33380101	33380101	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000627	exon18	c.G2389T	p.E797X	.	.	.
RASGRP3	25780	broad.mit.edu	36	2	33598568	33598568	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_170672	exon6	c.G219T	p.K73N	.	.	.
RASGRP3	25780	broad.mit.edu	36	2	33600559	33600559	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_170672	exon8	c.G402T	p.Q134H	.	.	.
RASGRP3	25780	broad.mit.edu	36	2	33628316	33628316	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_170672	exon15	c.G1536A	p.A512A	.	.	.
TTC15	51112	broad.mit.edu	36	2	3384582	3384582	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016030	exon3	c.C1075T	p.R359C	.	.	.
CRIM1	51232	broad.mit.edu	36	2	36594294	36594294	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016441	exon11	c.T1872C	p.D624D	.	.	.
CRIM1	51232	broad.mit.edu	36	2	36602887	36602887	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016441	exon13	c.C2355A	p.F785L	.	.	.
CRIM1	51232	broad.mit.edu	36	2	36627785	36627785	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016441	exon16	c.A2901G	p.I967M	.	.	.
FEZ2	9637	broad.mit.edu	36	2	36659294	36659294	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005102	exon5	c.A853C	p.N285H	.	.	.
VIT	5212	broad.mit.edu	36	2	36823890	36823890	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001177972	exon4	c.G262A	p.A88T	.	.	.
VIT	5212	broad.mit.edu	36	2	36894845	36894845	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001177969	exon15	c.C1874T	p.A625V	.	.	.
VIT	5212	broad.mit.edu	36	2	36894907	36894907	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001177969	exon15	c.G1936T	p.D646Y	.	.	.
HEATR5B	54497	broad.mit.edu	36	2	37062235	37062235	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019024	exon36	c.C6118T	p.R2040X	.	.	.
HEATR5B	54497	broad.mit.edu	36	2	37121926	37121926	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019024	exon19	c.C2710T	p.R904X	.	.	.
ALLC	55821	broad.mit.edu	36	2	3721250	3721250	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018436	exon8	c.G580T	p.E194X	.	.	.
SULT6B1	391365	broad.mit.edu	36	2	37260215	37260216	+	Nonsense_Mutation	DNP	CG	TA	TA	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001032377	exon4	c.304_305TA	.	.	.	.
CEBPZ	10153	broad.mit.edu	36	2	37301049	37301049	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005760	exon5	c.C2137A	p.L713I	.	.	.
PRKD3	23683	broad.mit.edu	36	2	37371565	37371565	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005813	exon3	c.A509G	p.Y170C	.	.	.
QPCT	25797	broad.mit.edu	36	2	37450417	37450417	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012413	exon5	c.G809T	p.R270I	.	.	.
FAM82A1	151393	broad.mit.edu	36	2	38070224	38070224	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001170793	exon5	c.G393T	p.E131D	.	.	.
FAM82A1	151393	broad.mit.edu	36	2	38078124	38078124	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001170793	exon7	c.C572A	p.S191Y	.	.	.
CYP1B1	1545	broad.mit.edu	36	2	38151581	38151581	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000104	exon3	c.G1420T	p.E474X	.	.	.
SRSF7	6432	broad.mit.edu	36	2	38830298	38830298	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001031684	exon3	c.G263A	p.R88K	.	.	.
DHX57	90957	broad.mit.edu	36	2	38879064	38879064	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198963	exon24	c.C4042T	p.R1348C	.	.	.
DHX57	90957	broad.mit.edu	36	2	38887317	38887317	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198963	exon22	c.T3704G	p.F1235C	.	.	.
DHX57	90957	broad.mit.edu	36	2	38941845	38941845	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198963	exon5	c.C1211T	p.S404L	.	.	.
SOS1	6654	broad.mit.edu	36	2	39066774	39066774	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005633	exon23	c.C3697A	p.L1233I	.	.	.
MAP4K3	8491	broad.mit.edu	36	2	39406181	39406181	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003618	exon12	c.C900T	p.F300F	.	.	.
TMEM178	130733	broad.mit.edu	36	2	39784820	39784820	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152390	exon2	c.G496T	p.D166Y	.	.	.
TMEM178	130733	broad.mit.edu	36	2	39797856	39797856	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152390	exon4	c.G855T	p.K285N	.	.	.
THUMPD2	80745	broad.mit.edu	36	2	39850649	39850649	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025264	exon3	c.C377A	p.S126Y	.	.	.
SLC8A1	6546	broad.mit.edu	36	2	40510016	40510016	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001112800	exon1	c.C909A	p.F303L	.	.	.
MTA3	57504	broad.mit.edu	36	2	42784851	42784851	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020744	exon12	c.C1039T	p.P347S	.	.	.
THADA	63892	broad.mit.edu	36	2	43652496	43652496	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001083953	exon13	c.G1918T	p.D640Y	.	.	.
THADA	63892	broad.mit.edu	36	2	43657861	43657861	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001083953	exon10	c.G841A	p.V281M	.	.	.
THADA	63892	broad.mit.edu	36	2	43671580	43671580	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001083953	exon4	c.G189T	p.E63D	.	.	.
PLEKHH2	130271	broad.mit.edu	36	2	43773248	43773248	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172069	exon4	c.C278T	p.S93L	.	.	.
ABCG5	64240	broad.mit.edu	36	2	43893828	43893828	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022436	exon13	c.A1887C	p.S629S	.	.	.
LRPPRC	10128	broad.mit.edu	36	2	43969250	43969250	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133259	exon38	c.C4178A	p.S1393Y	.	.	.
LRPPRC	10128	broad.mit.edu	36	2	44024496	44024496	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133259	exon23	c.C2338T	p.L780F	.	.	.
PPM1B	5495	broad.mit.edu	36	2	44298629	44298629	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_177969	exon3	c.C123T	p.G41G	.	.	.
PREPL	9581	broad.mit.edu	36	2	44419131	44419131	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171613	exon7	c.T751G	p.F251V	.	.	.
PREPL	9581	broad.mit.edu	36	2	44440157	44440157	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042385	exon1	c.C202T	p.R68W	.	.	.
SIX2	10736	broad.mit.edu	36	2	45089348	45089348	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016932	exon1	c.C406T	p.R136C	.	.	.
SRBD1	55133	broad.mit.edu	36	2	45628221	45628221	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018079	exon13	c.T1710G	p.H570Q	.	.	.
SRBD1	55133	broad.mit.edu	36	2	45686062	45686062	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018079	exon2	c.C23T	p.A8V	.	.	.
PRKCE	5581	broad.mit.edu	36	2	45732786	45732786	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005400	exon1	c.G43A	p.A15T	.	.	.
PRKCE	5581	broad.mit.edu	36	2	46060949	46060949	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005400	exon5	c.C618T	p.C206C	.	.	.
MSH2	4436	broad.mit.edu	36	2	47493060	47493060	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000251	exon4	c.A649C	p.I217L	.	.	.
MSH2	4436	broad.mit.edu	36	2	47510443	47510443	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000251	exon7	c.G1135T	p.D379Y	.	.	.
MSH2	4436	broad.mit.edu	36	2	47510525	47510525	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000251	exon7	c.G1217A	p.R406Q	MSH2,large_intestine,NS,Substitution - Nonsense,+1	.	.
MSH6	2956	broad.mit.edu	36	2	47880436	47880436	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000179	exon4	c.G1810T	p.E604X	.	.	.
MSH6	2956	broad.mit.edu	36	2	47881494	47881494	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000179	exon4	c.G2868T	p.E956D	.	.	.
FOXN2	3344	broad.mit.edu	36	2	48443291	48443291	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002158	exon5	c.C644A	p.S215Y	.	.	.
KLRAQ1	129285	broad.mit.edu	36	2	48546146	48546146	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135629	exon9	c.G758A	p.R253Q	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48662032	48662032	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198594	exon1	c.T756C	p.C252C	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48672363	48672363	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198594	exon2	c.T1998C	p.D666D	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48701584	48701584	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006872	exon2	c.G112T	p.D38Y	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48727261	48727261	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006872	exon6	c.A554G	p.E185G	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48750599	48750599	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006872	exon7	c.G1213T	p.D405Y	.	.	.
FSHR	2492	broad.mit.edu	36	2	49044609	49044609	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181446	exon9	c.C777T	p.I259I	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50633362	50633362	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135659	exon10	c.T1746C	p.A582A	.	.	.
ASB3	51130	broad.mit.edu	36	2	53795214	53795214	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016115	exon7	c.A791C	p.D264A	.	.	.
ERLEC1	27248	broad.mit.edu	36	2	53898597	53898597	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015701	exon14	c.C1439A	p.S480Y	.	.	.
PSME4	23198	broad.mit.edu	36	2	53968022	53968022	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014614	exon40	c.G4607A	p.R1536Q	.	.	.
PSME4	23198	broad.mit.edu	36	2	53974334	53974334	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014614	exon35	c.G4019A	p.R1340Q	.	.	.
PSME4	23198	broad.mit.edu	36	2	53980575	53980575	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014614	exon29	c.A3369C	p.E1123D	.	.	.
PSME4	23198	broad.mit.edu	36	2	53984708	53984708	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014614	exon27	c.C3033A	p.F1011L	.	.	.
PSME4	23198	broad.mit.edu	36	2	53989004	53989004	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014614	exon24	c.G2741A	p.R914Q	.	.	.
SPTBN1	6711	broad.mit.edu	36	2	54726847	54726847	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003128	exon23	c.G4597T	p.E1533X	.	.	.
RTN4	57142	broad.mit.edu	36	2	55106261	55106261	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020532	exon3	c.G2478T	p.E826D	.	.	.
RTN4	57142	broad.mit.edu	36	2	55106339	55106339	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020532	exon3	c.G2400T	p.L800F	.	.	.
RTN4	57142	broad.mit.edu	36	2	55108005	55108005	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020532	exon3	c.C734A	p.S245Y	.	.	.
C2orf63	130162	broad.mit.edu	36	2	55298470	55298470	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152385	exon4	c.A346G	p.T116A	.	.	.
CCDC88A	55704	broad.mit.edu	36	2	55389826	55389826	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135597	exon24	c.T4145G	p.F1382C	.	.	.
CCDC88A	55704	broad.mit.edu	36	2	55398277	55398277	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135597	exon20	c.C3526A	p.L1176I	.	.	.
CCDC104	112942	broad.mit.edu	36	2	55609612	55609612	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080667	exon4	c.G377A	p.R126Q	.	.	.
SMEK2	57223	broad.mit.edu	36	2	55697888	55697888	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001122964	exon1	c.T38C	p.L13P	.	.	.
PNPT1	87178	broad.mit.edu	36	2	55726003	55726003	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033109	exon22	c.A1807C	p.N603H	.	.	.
PNPT1	87178	broad.mit.edu	36	2	55753696	55753696	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033109	exon9	c.G702T	p.E234D	.	.	.
PNPT1	87178	broad.mit.edu	36	2	55760371	55760371	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033109	exon8	c.C629A	p.S210Y	.	.	.
VRK2	7444	broad.mit.edu	36	2	58165550	58165550	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130483	exon4	c.G217T	p.E73X	.	.	.
FANCL	55120	broad.mit.edu	36	2	58242170	58242170	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018062	exon12	c.C1011T	p.C337C	.	.	.
BCL11A	53335	broad.mit.edu	36	2	60533233	60533233	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138559	exon5	c.C703T	p.R235X	.	.	.
PAPOLG	64895	broad.mit.edu	36	2	60849524	60849524	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022894	exon5	c.T433G	p.L145V	.	.	.
PAPOLG	64895	broad.mit.edu	36	2	60877779	60877779	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022894	exon22	c.C2191T	p.R731X	.	.	.
PUS10	150962	broad.mit.edu	36	2	61041084	61041084	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144709	exon11	c.C947A	p.S316Y	.	.	.
PUS10	150962	broad.mit.edu	36	2	61043481	61043481	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144709	exon9	c.G772T	p.E258X	.	.	.
PUS10	150962	broad.mit.edu	36	2	61089435	61089435	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144709	exon3	c.C346A	p.L116I	.	.	.
PEX13	5194	broad.mit.edu	36	2	61129128	61129128	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002618	exon4	c.C931T	p.R311C	.	.	.
USP34	9736	broad.mit.edu	36	2	61268783	61268783	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014709	exon80	c.C10599T	p.V3533V	.	.	.
USP34	9736	broad.mit.edu	36	2	61295032	61295032	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014709	exon68	c.C8349T	p.F2783F	.	.	.
USP34	9736	broad.mit.edu	36	2	61307715	61307715	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014709	exon62	c.G7586A	p.R2529Q	.	.	.
USP34	9736	broad.mit.edu	36	2	61325850	61325850	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014709	exon51	c.C6626T	p.T2209M	.	.	.
USP34	9736	broad.mit.edu	36	2	61359030	61359030	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014709	exon40	c.G5309A	p.R1770Q	.	.	.
USP34	9736	broad.mit.edu	36	2	61392522	61392522	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014709	exon26	c.A3570C	p.Q1190H	.	.	.
USP34	9736	broad.mit.edu	36	2	61399871	61399871	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014709	exon22	c.C3109T	p.R1037X	.	.	.
USP34	9736	broad.mit.edu	36	2	61420111	61420111	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014709	exon18	c.C2623A	p.L875I	.	.	.
XPO1	7514	broad.mit.edu	36	2	61574683	61574683	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003400	exon12	c.C1095A	p.I365I	.	.	.
FAM161A	84140	broad.mit.edu	36	2	61916659	61916659	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032180	exon4	c.G1673T	p.R558I	.	.	.
FAM161A	84140	broad.mit.edu	36	2	61920303	61920303	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032180	exon3	c.C1340T	p.S447F	.	.	.
FAM161A	84140	broad.mit.edu	36	2	61920857	61920857	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032180	exon3	c.C786T	p.I262I	.	.	.
EHBP1	23301	broad.mit.edu	36	2	62911731	62911731	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142614	exon6	c.G568A	p.E190K	.	.	.
OTX1	5013	broad.mit.edu	36	2	63136533	63136533	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199770	exon5	c.G643A	p.A215T	.	.	.
C2orf86	51057	broad.mit.edu	36	2	63255385	63255385	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015910	exon15	c.C2002T	p.P668S	.	.	.
C2orf86	51057	broad.mit.edu	36	2	63485097	63485097	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015910	exon10	c.G1025A	p.S342N	.	.	.
C2orf86	51057	broad.mit.edu	36	2	63518119	63518119	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015910	exon8	c.G573A	p.K191K	.	.	.
UGP2	7360	broad.mit.edu	36	2	63964708	63964708	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001521	exon5	c.A519C	p.K173N	.	.	.
UGP2	7360	broad.mit.edu	36	2	63966414	63966414	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001521	exon6	c.C730A	p.L244M	.	.	.
VPS54	51542	broad.mit.edu	36	2	64029677	64029677	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016516	exon8	c.G1135T	p.E379X	.	.	.
PELI1	57162	broad.mit.edu	36	2	64175778	64175778	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020651	exon7	c.G819A	p.Q273Q	.	.	.
AFTPH	54812	broad.mit.edu	36	2	64632132	64632132	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017657	exon2	c.G20A	p.R7Q	.	.	.
CEP68	23177	broad.mit.edu	36	2	65163236	65163236	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015147	exon6	c.C2167T	p.R723C	.	.	.
CEP68	23177	broad.mit.edu	36	2	65163318	65163318	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015147	exon6	c.T2249C	p.M750T	.	.	.
ACTR2	10097	broad.mit.edu	36	2	65320592	65320592	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001005386	exon2	c.G151T	p.E51X	.	.	.
SPRED2	200734	broad.mit.edu	36	2	65394506	65394506	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181784	exon6	c.C890T	p.S297L	.	.	.
SPRED2	200734	broad.mit.edu	36	2	65394754	65394754	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181784	exon6	c.C642T	p.I214I	.	.	.
TMEM18	129787	broad.mit.edu	36	2	659830	659830	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152834	exon4	c.A254G	p.Y85C	.	.	.
ETAA1	54465	broad.mit.edu	36	2	67484451	67484451	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019002	exon5	c.A1133T	p.D378V	.	.	.
ETAA1	54465	broad.mit.edu	36	2	67485082	67485082	+	Missense_Mutation	SNP	A	C	C	rs61737411	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019002	exon5	c.A1764C	p.E588D	.	.	.
ETAA1	54465	broad.mit.edu	36	2	67485235	67485235	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019002	exon5	c.C1917A	p.I639I	.	.	.
FBXO48	554251	broad.mit.edu	36	2	68545625	68545625	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001024680	exon3	c.C157T	p.R53W	.	.	.
APLF	200558	broad.mit.edu	36	2	68570887	68570887	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173545	exon2	c.G158A	p.R53Q	.	.	.
APLF	200558	broad.mit.edu	36	2	68648015	68648015	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173545	exon9	c.C1325T	p.T442M	.	.	.
PROKR1	10887	broad.mit.edu	36	2	68735945	68735945	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138964	exon2	c.C915T	p.I305I	.	.	.
ARHGAP25	9938	broad.mit.edu	36	2	68894042	68894042	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166276	exon5	c.C773T	p.A258V	.	.	.
ARHGAP25	9938	broad.mit.edu	36	2	68898588	68898588	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166276	exon7	c.C940A	p.L314I	.	.	.
ARHGAP25	9938	broad.mit.edu	36	2	68903185	68903185	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166276	exon9	c.C1389T	p.F463F	.	.	.
GKN1	56287	broad.mit.edu	36	2	69055302	69055302	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019617	exon1	c.C31T	p.R11C	.	.	.
CMPK2	129607	broad.mit.edu	36	2	6918847	6918847	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207315	exon3	c.G911T	p.R304I	.	.	.
GFPT1	2673	broad.mit.edu	36	2	69439941	69439941	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002056	exon5	c.G371A	p.G124E	.	.	.
AAK1	22848	broad.mit.edu	36	2	69586298	69586298	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014911	exon16	c.G2176A	p.E726K	.	.	.
AAK1	22848	broad.mit.edu	36	2	69623270	69623270	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014911	exon5	c.C423T	p.R141R	.	.	.
GMCL1	64395	broad.mit.edu	36	2	69930364	69930364	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178439	exon8	c.C920A	p.S307Y	.	.	.
MXD1	4084	broad.mit.edu	36	2	70016054	70016054	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002357	exon4	c.C271T	p.R91X	.	.	.
PCBP1	5093	broad.mit.edu	36	2	70168426	70168426	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006196	exon1	c.T47A	p.I16N	.	.	.
TIA1	7072	broad.mit.edu	36	2	70296845	70296845	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022037	exon9	c.C730T	p.R244W	.	.	.
RNF144A	9781	broad.mit.edu	36	2	7072345	7072345	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014746	exon5	c.T292A	p.F98I	.	.	.
CD207	50489	broad.mit.edu	36	2	70913669	70913669	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015717	exon4	c.C587A	p.S196Y	.	.	.
VAX2	25806	broad.mit.edu	36	2	71013470	71013470	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012476	exon3	c.G501A	p.K167K	.	.	.
ANKRD53	79998	broad.mit.edu	36	2	71064837	71064837	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024933	exon6	c.C980A	p.S327Y	.	.	.
MCEE	84693	broad.mit.edu	36	2	71205100	71205100	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032601	exon2	c.C122A	p.S41Y	.	.	.
ZNF638	27332	broad.mit.edu	36	2	71503564	71503564	+	Nonsense_Mutation	SNP	G	T	T	rs4130106	by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014497	exon22	c.G3412T	p.E1138X	.	.	.
ZNF638	27332	broad.mit.edu	36	2	71504009	71504009	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014497	exon22	c.G3857A	p.G1286E	.	.	.
ZNF638	27332	broad.mit.edu	36	2	71507562	71507562	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014497	exon24	c.A5055G	p.E1685E	.	.	.
DYSF	8291	broad.mit.edu	36	2	71736814	71736814	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130982	exon43	c.G4620T	p.Q1540H	.	.	.
DYSF	8291	broad.mit.edu	36	2	71750293	71750293	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130982	exon51	c.G5672A	p.R1891H	.	.	.
EXOC6B	23233	broad.mit.edu	36	2	72595732	72595732	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015189	exon9	c.G947A	p.R316Q	.	.	.
SFXN5	94097	broad.mit.edu	36	2	73068900	73068900	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144579	exon10	c.C620A	p.A207D	.	.	.
SMYD5	10322	broad.mit.edu	36	2	73305525	73305525	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006062	exon11	c.G964T	p.A322S	.	.	.
SMYD5	10322	broad.mit.edu	36	2	73306313	73306313	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006062	exon12	c.G1082A	p.R361H	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73532682	73532682	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015120	exon8	c.G5517A	p.K1839K	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73533701	73533701	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015120	exon8	c.G6536T	p.G2179V	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73570390	73570390	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015120	exon10	c.G7793T	p.R2598I	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73571928	73571928	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015120	exon10	c.G9331T	p.E3111X	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73682868	73682868	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015120	exon20	c.C12160T	p.R4054W	.	.	.
DUSP11	8446	broad.mit.edu	36	2	73847229	73847229	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003584	exon8	c.G759T	p.K253N	.	.	.
DUSP11	8446	broad.mit.edu	36	2	73849954	73849954	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003584	exon5	c.T581G	p.L194R	.	.	.
DUSP11	8446	broad.mit.edu	36	2	73854493	73854493	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003584	exon4	c.G516T	p.E172D	.	.	.
C2orf78	388960	broad.mit.edu	36	2	73896791	73896791	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080474	exon3	c.G1933A	p.D645N	.	.	.
TET3	200424	broad.mit.edu	36	2	74181905	74181905	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144993	exon9	c.C4077T	p.P1359P	.	.	.
BOLA3	388962	broad.mit.edu	36	2	74216281	74216281	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_212552	exon4	c.G271T	p.E91X	.	.	.
MOBKL1B	55233	broad.mit.edu	36	2	74247732	74247732	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018221	exon3	c.C192A	p.F64L	.	.	.
DCTN1	1639	broad.mit.edu	36	2	74442751	74442751	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023019	exon26	c.C3233A	p.S1078Y	.	.	.
DCTN1	1639	broad.mit.edu	36	2	74448737	74448737	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023019	exon12	c.G1482T	p.E494D	.	.	.
RTKN	6242	broad.mit.edu	36	2	74509334	74509334	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001015056	exon8	c.T739C	p.C247R	.	.	.
RTKN	6242	broad.mit.edu	36	2	74509486	74509486	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001015056	exon7	c.C697A	p.H233N	.	.	.
RTKN	6242	broad.mit.edu	36	2	74520209	74520209	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033046	exon2	c.C49T	p.R17W	.	.	.
WBP1	23559	broad.mit.edu	36	2	74540672	74540672	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012477	exon3	c.C337T	p.L113L	.	.	.
MRPL53	116540	broad.mit.edu	36	2	74553236	74553236	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_053050	exon1	c.C60A	p.F20L	.	.	.
TTC31	64427	broad.mit.edu	36	2	74571338	74571338	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022492	exon5	c.G510T	p.M170I	.	.	.
AUP1	550	broad.mit.edu	36	2	74608634	74608634	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181575	exon7	c.C679T	p.R227C	.	.	.
LOXL3	84695	broad.mit.edu	36	2	74614740	74614740	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032603	exon12	c.C2071A	p.L691I	.	.	.
LOXL3	84695	broad.mit.edu	36	2	74633239	74633239	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032603	exon2	c.C31T	p.P11S	.	.	.
DOK1	1796	broad.mit.edu	36	2	74636275	74636275	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001381	exon3	c.G426T	p.E142D	.	.	.
SEMA4F	10505	broad.mit.edu	36	2	74754377	74754377	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004263	exon7	c.G736A	p.E246K	.	.	.
C2orf3	6936	broad.mit.edu	36	2	75746603	75746603	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003203	exon16	c.T2188G	p.L730V	.	.	.
LRRTM4	80059	broad.mit.edu	36	2	76829386	76829386	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001134745	exon4	c.C1716T	p.I572I	.	.	.
LRRTM4	80059	broad.mit.edu	36	2	77600395	77600395	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024993	exon3	c.G108T	p.K36N	.	.	.
REG1A	5967	broad.mit.edu	36	2	79202644	79202644	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002909	exon4	c.C206T	p.S69L	.	.	.
LRRTM1	347730	broad.mit.edu	36	2	80383155	80383155	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178839	exon2	c.C1301T	p.A434V	.	.	.
LRRTM1	347730	broad.mit.edu	36	2	80383652	80383652	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178839	exon2	c.C804T	p.I268I	.	.	.
SUCLG1	8802	broad.mit.edu	36	2	84512149	84512149	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003849	exon7	c.T819C	p.H273H	.	.	.
SUCLG1	8802	broad.mit.edu	36	2	84512220	84512220	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003849	exon7	c.G748T	p.E250X	.	.	.
DNAH6	1768	broad.mit.edu	36	2	84654204	84654204	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001370	exon12	c.C1906A	p.L636I	.	.	.
TGOLN2	10618	broad.mit.edu	36	2	85407436	85407436	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006464	exon2	c.G930A	p.E310E	.	.	.
ELMOD3	84173	broad.mit.edu	36	2	85470995	85470995	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032213	exon11	c.C1039A	p.L347I	.	.	.
GGCX	2677	broad.mit.edu	36	2	85631675	85631675	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000821	exon13	c.C1772T	p.T591M	.	.	.
GGCX	2677	broad.mit.edu	36	2	85633874	85633874	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000821	exon8	c.C1147A	p.L383I	.	.	.
SFTPB	6439	broad.mit.edu	36	2	85746278	85746278	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198843	exon6	c.C580T	p.P194S	.	.	.
ST3GAL5	8869	broad.mit.edu	36	2	85925141	85925141	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001042437	exon6	c.C828T	p.I276I	.	.	.
POLR1A	25885	broad.mit.edu	36	2	86180652	86180652	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015425	exon2	c.C232A	p.L78M	.	.	.
PTCD3	55037	broad.mit.edu	36	2	86215513	86215513	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017952	exon21	c.C1670A	p.S557Y	.	.	.
IMMT	10989	broad.mit.edu	36	2	86225231	86225231	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100169	exon15	c.G1945T	p.E649X	.	.	.
IMMT	10989	broad.mit.edu	36	2	86226717	86226717	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001100169	exon14	c.G1645A	p.E549K	.	.	.
MRPL35	51318	broad.mit.edu	36	2	86287916	86287916	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016622	exon3	c.C333T	p.I111I	.	.	.
KDM3A	55818	broad.mit.edu	36	2	86547430	86547430	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146688	exon10	c.G1432T	p.A478S	.	.	.
RNF103	7844	broad.mit.edu	36	2	86685441	86685441	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001198951	exon5	c.C1082A	p.S361Y	.	.	.
KIDINS220	57498	broad.mit.edu	36	2	8789135	8789135	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020738	exon30	c.G4482T	p.K1494N	.	.	.
KRCC1	51315	broad.mit.edu	36	2	88109183	88109183	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016618	exon4	c.G15T	p.K5N	.	.	.
SMYD1	150572	broad.mit.edu	36	2	88168616	88168616	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198274	exon3	c.G435T	p.K145N	.	.	.
SMYD1	150572	broad.mit.edu	36	2	88168703	88168703	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198274	exon3	c.C522T	p.F174F	.	.	.
EIF2AK3	9451	broad.mit.edu	36	2	88694484	88694484	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004836	exon2	c.C311T	p.S104L	.	.	.
RPIA	22934	broad.mit.edu	36	2	88780679	88780679	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144563	exon3	c.T384C	p.C128C	.	.	.
MBOAT2	129642	broad.mit.edu	36	2	8918334	8918334	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138799	exon12	c.C1197A	p.N399K	.	.	.
MBOAT2	129642	broad.mit.edu	36	2	9016170	9016170	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138799	exon2	c.G128A	p.R43Q	.	.	.
CPSF3	51692	broad.mit.edu	36	2	9510545	9510545	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016207	exon12	c.G1448T	p.G483V	.	.	.
ADAM17	6868	broad.mit.edu	36	2	9583813	9583813	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003183	exon6	c.C631T	p.R211X	.	.	.
ADRA2B	151	broad.mit.edu	36	2	96144866	96144866	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000682	exon1	c.G750A	p.S250S	.	.	.
ASTL	431705	broad.mit.edu	36	2	96153345	96153345	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002036	exon9	c.A1267C	p.N423H	.	.	.
ASTL	431705	broad.mit.edu	36	2	96159565	96159565	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002036	exon7	c.G684A	p.T228T	.	.	.
ASTL	431705	broad.mit.edu	36	2	96162136	96162136	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001002036	exon6	c.G507A	p.A169A	.	.	.
ASTL	431705	broad.mit.edu	36	2	96162944	96162944	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002036	exon5	c.G402A	p.R134R	.	.	.
SNRNP200	23020	broad.mit.edu	36	2	96307375	96307375	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014014	exon40	c.T5651G	p.F1884C	.	.	.
SNRNP200	23020	broad.mit.edu	36	2	96326428	96326428	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014014	exon12	c.G1485A	p.T495T	.	.	.
ITPRIPL1	150771	broad.mit.edu	36	2	96356286	96356286	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001163523	exon2	c.C166T	p.R56X	.	.	.
KIAA1310	55683	broad.mit.edu	36	2	96639008	96639008	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001115016	exon12	c.G1338T	p.K446N	.	.	.
ANKRD36B	57730	broad.mit.edu	36	2	97534358	97534358	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025190	exon17	c.C1291A	p.P431T	.	.	.
VWA3B	200403	broad.mit.edu	36	2	98098631	98098631	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144992	exon3	c.G281T	p.R94I	.	.	.
VWA3B	200403	broad.mit.edu	36	2	98200779	98200779	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144992	exon14	c.G1875T	p.Q625H	.	.	.
VWA3B	200403	broad.mit.edu	36	2	98213076	98213076	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144992	exon16	c.T2282C	p.V761A	.	.	.
VWA3B	200403	broad.mit.edu	36	2	98219483	98219483	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144992	exon19	c.C2531A	p.S844Y	.	.	.
CNGA3	1261	broad.mit.edu	36	2	98352949	98352949	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001298	exon2	c.C79T	p.R27C	.	.	.
INPP4A	3631	broad.mit.edu	36	2	98535846	98535846	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001134225	exon14	c.C1329T	p.L443L	.	.	.
INPP4A	3631	broad.mit.edu	36	2	98570414	98570414	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001134225	exon25	c.C2830T	p.R944C	.	.	.
C2orf15	150590	broad.mit.edu	36	2	99133588	99133588	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144706	exon4	c.G237T	p.K79N	.	.	.
LIPT1	51601	broad.mit.edu	36	2	99145229	99145229	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145197	exon4	c.G377T	p.R126I	.	.	.
LIPT1	51601	broad.mit.edu	36	2	99145947	99145947	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145197	exon4	c.C1095T	p.L365L	.	.	.
EIF5B	9669	broad.mit.edu	36	2	99372726	99372726	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015904	exon15	c.T2385C	p.I795I	.	.	.
REV1	51455	broad.mit.edu	36	2	99389379	99389379	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016316	exon16	c.G2454T	p.G818G	.	.	.
REV1	51455	broad.mit.edu	36	2	99393635	99393635	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016316	exon14	c.G2299T	p.E767X	.	.	.
REV1	51455	broad.mit.edu	36	2	99404441	99404441	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016316	exon11	c.C1783T	p.R595C	.	.	.
AFF3	3899	broad.mit.edu	36	2	99709979	99709979	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001025108	exon10	c.G1158A	p.S386S	.	.	.
AFF3	3899	broad.mit.edu	36	2	99989640	99989640	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001025108	exon6	c.G834A	p.S278S	.	.	.
SUSD1	64420	broad.mit.edu	36	9	113951380	113951382	+	In_Frame_Del	DEL	TTG	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022486	exon3	c.336_338del	p.112_113del	.	.	.
JAK2	3717	broad.mit.edu	36	9	5079745	5079745	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004972	exon20	c.2643delA	p.V881fs	.	.	.
GOLM1	51280	broad.mit.edu	36	9	87838104	87838106	+	In_Frame_Del	DEL	CTC	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177937	exon9	c.1040_1042del	p.347_348del	.	.	.
TBC1D2	55357	broad.mit.edu	36	9	100001636	100001636	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018421	exon13	c.C2602T	p.R868W	.	.	.
TBC1D2	55357	broad.mit.edu	36	9	100005506	100005506	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018421	exon10	c.C2156T	p.A719V	.	.	.
TBC1D2	55357	broad.mit.edu	36	9	100046164	100046164	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018421	exon3	c.G580A	p.A194T	.	.	.
GABBR2	9568	broad.mit.edu	36	9	100095897	100095897	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005458	exon18	c.C2651A	p.S884Y	.	.	.
GABBR2	9568	broad.mit.edu	36	9	100108443	100108443	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005458	exon15	c.C2010T	p.F670F	.	.	.
GABBR2	9568	broad.mit.edu	36	9	100187799	100187799	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005458	exon11	c.C1606A	p.L536I	.	.	.
ANKS6	203286	broad.mit.edu	36	9	100538687	100538687	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173551	exon15	c.T2551G	p.F851V	.	.	.
ANKS6	203286	broad.mit.edu	36	9	100576179	100576179	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173551	exon9	c.G1622A	p.R541Q	.	.	.
GALNT12	79695	broad.mit.edu	36	9	100648192	100648192	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024642	exon9	c.C1571A	p.T524N	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100787966	100787966	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001855	exon3	c.G399A	p.R133R	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100799075	100799075	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001855	exon6	c.A843G	p.P281P	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100842630	100842630	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001855	exon23	c.G2482A	p.D828N	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100844207	100844207	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001855	exon24	c.A2571G	p.E857E	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100871782	100871782	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001855	exon42	c.G3960T	p.Q1320H	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100871957	100871957	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001855	exon42	c.G4135A	p.E1379K	.	.	.
NR4A3	8013	broad.mit.edu	36	9	101634883	101634883	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173199	exon4	c.G1043A	p.R348Q	.	.	.
NR4A3	8013	broad.mit.edu	36	9	101635483	101635483	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173199	exon5	c.C1180A	p.P394T	.	.	.
STX17	55014	broad.mit.edu	36	9	101770627	101770627	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017919	exon8	c.A760G	p.K254E	.	.	.
ERP44	23071	broad.mit.edu	36	9	101900899	101900899	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015051	exon1	c.C45A	p.S15S	.	.	.
TEX10	54881	broad.mit.edu	36	9	102151373	102151373	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017746	exon2	c.A94C	p.N32H	.	.	.
TMEFF1	8577	broad.mit.edu	36	9	102311191	102311191	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003692	exon3	c.G390T	p.K130N	.	.	.
TMEFF1	8577	broad.mit.edu	36	9	102374661	102374661	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003692	exon9	c.G940T	p.D314Y	.	.	.
MURC	347273	broad.mit.edu	36	9	102387955	102387955	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001018116	exon2	c.G496A	p.D166N	.	.	.
ZNF189	7743	broad.mit.edu	36	9	103211456	103211456	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_197977	exon4	c.C1459T	p.R487X	.	.	.
RNF20	56254	broad.mit.edu	36	9	103363326	103363326	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019592	exon18	c.G2642A	p.R881Q	.	.	.
GRIN3A	116443	broad.mit.edu	36	9	103381437	103381437	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133445	exon7	c.C2793A	p.F931L	.	.	.
GRIN3A	116443	broad.mit.edu	36	9	103472365	103472365	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133445	exon3	c.C2150A	p.S717Y	.	.	.
DMRT2	10655	broad.mit.edu	36	9	1046474	1046474	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181872	exon4	c.G887T	p.S296I	.	.	.
SMC2	10592	broad.mit.edu	36	9	105922208	105922208	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006444	exon16	c.G2076T	p.E692D	.	.	.
SMC2	10592	broad.mit.edu	36	9	105925307	105925307	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006444	exon17	c.G2230T	p.E744X	.	.	.
SMC2	10592	broad.mit.edu	36	9	105940241	105940241	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006444	exon24	c.C3391T	p.L1131L	.	.	.
OR13C4	138804	broad.mit.edu	36	9	106328894	106328894	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001919	exon1	c.G418A	p.V140M	.	.	.
OR13C8	138802	broad.mit.edu	36	9	106371427	106371427	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004483	exon1	c.C158A	p.S53Y	.	.	.
OR13C5	138799	broad.mit.edu	36	9	106400685	106400685	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004482	exon1	c.C831G	p.D277E	.	.	.
OR13C2	392376	broad.mit.edu	36	9	106406792	106406792	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004481	exon1	c.G938T	p.R313I	.	.	.
OR13C2	392376	broad.mit.edu	36	9	106407460	106407460	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004481	exon1	c.G270T	p.K90N	.	.	.
OR13C2	392376	broad.mit.edu	36	9	106407665	106407665	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004481	exon1	c.G65T	p.R22I	.	.	.
OR13C9	286362	broad.mit.edu	36	9	106419478	106419478	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001956	exon1	c.G829T	p.D277Y	.	.	.
NIPSNAP3A	25934	broad.mit.edu	36	9	106556745	106556745	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015469	exon4	c.C523A	p.L175I	.	.	.
NIPSNAP3A	25934	broad.mit.edu	36	9	106561366	106561366	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015469	exon6	c.C670T	p.R224W	.	.	.
ABCA1	19	broad.mit.edu	36	9	106593128	106593128	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005502	exon44	c.C5823T	p.C1941C	.	.	.
ABCA1	19	broad.mit.edu	36	9	106623490	106623490	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005502	exon20	c.G2947A	p.V983M	.	.	.
ABCA1	19	broad.mit.edu	36	9	106624700	106624700	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005502	exon19	c.G2726A	p.R909Q	.	.	.
ABCA1	19	broad.mit.edu	36	9	106705726	106705726	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005502	exon2	c.G56T	p.R19I	.	.	.
SLC44A1	23446	broad.mit.edu	36	9	107111869	107111869	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080546	exon3	c.G170T	p.R57I	.	.	.
FKTN	2218	broad.mit.edu	36	9	107403263	107403263	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001079802	exon5	c.T182G	p.F61C	.	.	.
TMEM38B	55151	broad.mit.edu	36	9	107550274	107550274	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018112	exon5	c.C642A	p.I214I	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108729121	108729121	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021224	exon3	c.C3107T	p.S1036L	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108730802	108730802	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021224	exon3	c.C4788T	p.Y1596Y	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108731175	108731175	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021224	exon3	c.G5161A	p.D1721N	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108786293	108786293	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021224	exon10	c.C6838T	p.R2280C	.	.	.
ACTL7B	10880	broad.mit.edu	36	9	110657888	110657888	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006686	exon1	c.G144T	p.K48N	.	.	.
CTNNAL1	8727	broad.mit.edu	36	9	110744877	110744877	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003798	exon19	c.A2198C	p.K733T	.	.	.
CTNNAL1	8727	broad.mit.edu	36	9	110781564	110781564	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003798	exon7	c.C919T	p.R307W	.	.	.
CTNNAL1	8727	broad.mit.edu	36	9	110801333	110801333	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003798	exon2	c.G166T	p.D56Y	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112210174	112210174	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153366	exon38	c.C7527A	p.F2509L	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112210312	112210312	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153366	exon38	c.C7389A	p.L2463L	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112210582	112210582	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153366	exon38	c.C7119T	p.F2373F	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112213831	112213831	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153366	exon37	c.C5981A	p.T1994N	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112237362	112237362	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153366	exon29	c.C4868A	p.S1623Y	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112252300	112252300	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153366	exon24	c.C3963A	p.V1321V	.	.	.
MUSK	4593	broad.mit.edu	36	9	112578744	112578744	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005592	exon10	c.G1372T	p.E458X	.	.	.
LPAR1	1902	broad.mit.edu	36	9	112677738	112677738	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001401	exon4	c.G879T	p.E293D	.	.	.
LPAR1	1902	broad.mit.edu	36	9	112743882	112743882	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001401	exon3	c.G433A	p.E145K	.	.	.
OR2K2	26248	broad.mit.edu	36	9	113129589	113129589	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_205859	exon1	c.C946T	p.L316F	.	.	.
KIAA0368	23392	broad.mit.edu	36	9	113191745	113191745	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080398	exon32	c.G3893A	p.R1298Q	.	.	.
ZNF483	158399	broad.mit.edu	36	9	113344148	113344148	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133464	exon6	c.C1112A	p.S371Y	.	.	.
PTGR1	22949	broad.mit.edu	36	9	113372297	113372297	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146109	exon9	c.G774T	p.E258D	.	.	.
DNAJC25	548645	broad.mit.edu	36	9	113451617	113451617	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001015882	exon3	c.C553T	p.R185C	.	.	.
C9orf84	158401	broad.mit.edu	36	9	113493864	113493864	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173521	exon25	c.C4022T	p.S1341F	.	.	.
C9orf84	158401	broad.mit.edu	36	9	113502055	113502055	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173521	exon22	c.G2991T	p.K997N	.	.	.
UGCG	7357	broad.mit.edu	36	9	113731636	113731636	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003358	exon6	c.C594A	p.I198I	.	.	.
SUSD1	64420	broad.mit.edu	36	9	113844058	113844058	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022486	exon16	c.C2153T	p.S718L	.	.	.
SUSD1	64420	broad.mit.edu	36	9	113904372	113904372	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022486	exon9	c.G1186T	p.E396X	.	.	.
C9orf80	58493	broad.mit.edu	36	9	114489670	114489670	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021218	exon5	c.T284G	p.L95R	.	.	.
C9orf80	58493	broad.mit.edu	36	9	114491714	114491714	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021218	exon4	c.G133A	p.A45T	.	.	.
ZNF883	169834	broad.mit.edu	36	9	114799433	114799433	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001101338	exon5	c.C928T	p.R310X	.	.	.
ZNF883	169834	broad.mit.edu	36	9	114800011	114800011	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001101338	exon5	c.G350T	p.R117I	.	.	.
ZNF883	169834	broad.mit.edu	36	9	114800331	114800331	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001101338	exon5	c.G30A	p.A10A	.	.	.
ZFP37	7539	broad.mit.edu	36	9	114845025	114845025	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003408	exon4	c.G1694T	p.R565I	.	.	.
ZFP37	7539	broad.mit.edu	36	9	114845762	114845762	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003408	exon4	c.A957G	p.K319K	.	.	.
ZFP37	7539	broad.mit.edu	36	9	114845975	114845975	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003408	exon4	c.A744G	p.K248K	.	.	.
ZFP37	7539	broad.mit.edu	36	9	114858762	114858762	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003408	exon1	c.C28A	p.L10M	.	.	.
SLC31A1	1317	broad.mit.edu	36	9	115060896	115060896	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001859	exon4	c.C304T	p.R102C	.	.	.
C9orf43	257169	broad.mit.edu	36	9	115230317	115230317	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152786	exon12	c.C1100T	p.S367L	.	.	.
RGS3	5998	broad.mit.edu	36	9	115397863	115397863	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144488	exon25	c.G3408T	p.K1136N	.	.	.
ZNF618	114991	broad.mit.edu	36	9	115834815	115834815	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133374	exon11	c.C875T	p.S292L	.	.	.
ZNF618	114991	broad.mit.edu	36	9	115851221	115851221	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133374	exon14	c.C1539T	p.F513F	.	.	.
COL27A1	85301	broad.mit.edu	36	9	115996547	115996547	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032888	exon6	c.G2059A	p.D687N	.	.	.
COL27A1	85301	broad.mit.edu	36	9	116052764	116052764	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032888	exon25	c.G3028T	p.E1010X	.	.	.
COL27A1	85301	broad.mit.edu	36	9	116067183	116067183	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032888	exon31	c.G3311A	p.R1104Q	.	.	.
ORM1	5004	broad.mit.edu	36	9	116126911	116126911	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000607	exon4	c.G349A	p.A117T	.	.	.
AKNA	80709	broad.mit.edu	36	9	116178570	116178570	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030767	exon3	c.C1338T	p.L446L	.	.	.
AKNA	80709	broad.mit.edu	36	9	116179061	116179061	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030767	exon3	c.G847T	p.E283X	.	.	.
DFNB31	25861	broad.mit.edu	36	9	116228460	116228460	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015404	exon4	c.G1018A	p.D340N	.	.	.
TNFSF8	944	broad.mit.edu	36	9	116706188	116706188	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001244	exon4	c.G549A	p.T183T	.	.	.
TNC	3371	broad.mit.edu	36	9	116833684	116833684	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002160	exon23	c.G5889A	p.R1963R	.	.	.
TNC	3371	broad.mit.edu	36	9	116886436	116886436	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002160	exon4	c.C2004T	p.F668F	.	.	.
PAPPA	5069	broad.mit.edu	36	9	118029638	118029638	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002581	exon6	c.C2219A	p.P740H	.	.	.
PAPPA	5069	broad.mit.edu	36	9	118133455	118133455	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002581	exon11	c.C3259T	p.R1087W	.	.	.
ASTN2	23245	broad.mit.edu	36	9	118665766	118665766	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014010	exon10	c.C1804T	p.R602C	.	.	.
ASTN2	23245	broad.mit.edu	36	9	118810204	118810204	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014010	exon6	c.G1426A	p.D476N	.	.	.
ASTN2	23245	broad.mit.edu	36	9	119016667	119016667	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014010	exon3	c.G806A	p.R269H	.	.	.
TLR4	7099	broad.mit.edu	36	9	119515569	119515569	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138554	exon3	c.A1342C	p.N448H	.	.	.
TLR4	7099	broad.mit.edu	36	9	119516044	119516044	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138554	exon3	c.G1817A	p.R606Q	.	.	.
TLR4	7099	broad.mit.edu	36	9	119516358	119516358	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138554	exon3	c.G2131T	p.D711Y	.	.	.
DBC1	1620	broad.mit.edu	36	9	120970097	120970097	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014618	exon8	c.C1372T	p.R458X	.	.	.
CDK5RAP2	55755	broad.mit.edu	36	9	122205106	122205106	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018249	exon34	c.G5106A	p.S1702S	.	.	.
CDK5RAP2	55755	broad.mit.edu	36	9	122209269	122209269	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018249	exon32	c.G4805A	p.R1602H	.	.	.
PSMD5	5711	broad.mit.edu	36	9	122628933	122628933	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005047	exon6	c.G745T	p.V249L	.	.	.
TRAF1	7185	broad.mit.edu	36	9	122725817	122725817	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190945	exon4	c.G215A	p.R72Q	.	.	.
C5	727	broad.mit.edu	36	9	122793364	122793364	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001735	exon23	c.G2867A	p.R956Q	.	.	.
C5	727	broad.mit.edu	36	9	122832508	122832508	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001735	exon7	c.C746A	p.T249N	.	.	.
CEP110	11064	broad.mit.edu	36	9	122959930	122959930	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007018	exon27	c.G4588T	p.D1530Y	.	.	.
CEP110	11064	broad.mit.edu	36	9	122964244	122964244	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007018	exon32	c.G5297A	p.R1766Q	.	.	.
CEP110	11064	broad.mit.edu	36	9	122970246	122970246	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007018	exon36	c.A5896G	p.T1966A	.	.	.
STOM	2040	broad.mit.edu	36	9	123143495	123143495	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004099	exon7	c.G673A	p.E225K	.	.	.
OR1J2	26740	broad.mit.edu	36	9	124312913	124312913	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_054107	exon1	c.G12T	p.E4D	.	.	.
OR1J2	26740	broad.mit.edu	36	9	124313177	124313177	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_054107	exon1	c.C276A	p.I92I	.	.	.
OR1N2	138882	broad.mit.edu	36	9	124356081	124356081	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004457	exon1	c.C812T	p.S271F	.	.	.
OR1B1	347169	broad.mit.edu	36	9	124430915	124430915	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004450	exon1	c.C721T	p.R241C	.	.	.
OR1L6	392390	broad.mit.edu	36	9	124552363	124552363	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004453	exon1	c.C416A	p.P139Q	.	.	.
OR1L6	392390	broad.mit.edu	36	9	124552724	124552724	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004453	exon1	c.C777T	p.V259V	.	.	.
OR1K1	392392	broad.mit.edu	36	9	124602537	124602537	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080859	exon1	c.C315A	p.F105L	.	.	.
OR1K1	392392	broad.mit.edu	36	9	124602870	124602870	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080859	exon1	c.C648T	p.L216L	.	.	.
RC3H2	54542	broad.mit.edu	36	9	124695010	124695010	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018835	exon3	c.A348C	p.K116N	.	.	.
RC3H2	54542	broad.mit.edu	36	9	124699470	124699470	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018835	exon2	c.G140A	p.R47Q	.	.	.
ZBTB6	10773	broad.mit.edu	36	9	124713931	124713931	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006626	exon2	c.G242A	p.G81D	.	.	.
RABGAP1	23637	broad.mit.edu	36	9	124812562	124812562	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012197	exon11	c.C1483T	p.R495C	.	.	.
GPR21	2844	broad.mit.edu	36	9	124836816	124836816	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005294	exon1	c.T150G	p.I50M	.	.	.
GPR21	2844	broad.mit.edu	36	9	124837084	124837084	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005294	exon1	c.C418A	p.L140M	.	.	.
STRBP	55342	broad.mit.edu	36	9	124938494	124938494	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171137	exon15	c.G1577A	p.R526H	.	.	.
STRBP	55342	broad.mit.edu	36	9	124981144	124981144	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171137	exon4	c.G145T	p.E49X	.	.	.
DENND1A	57706	broad.mit.edu	36	9	125259496	125259496	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024820	exon15	c.G1138T	p.G380C	.	.	.
DENND1A	57706	broad.mit.edu	36	9	125259965	125259965	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024820	exon14	c.C1026T	p.F342F	.	.	.
NR6A1	2649	broad.mit.edu	36	9	126342270	126342270	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033334	exon5	c.C459T	p.I153I	.	.	.
SCAI	286205	broad.mit.edu	36	9	126797056	126797056	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173690	exon15	c.C1373T	p.S458L	.	.	.
TYRP1	7306	broad.mit.edu	36	9	12694674	12694674	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000550	exon6	c.C1230A	p.V410V	.	.	.
PPP6C	5537	broad.mit.edu	36	9	126955764	126955764	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001123369	exon5	c.G472A	p.E158K	.	.	.
HSPA5	3309	broad.mit.edu	36	9	127041208	127041208	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005347	exon5	c.G829T	p.D277Y	.	.	.
GAPVD1	26130	broad.mit.edu	36	9	127104495	127104495	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015635	exon3	c.T598C	p.L200L	.	.	.
GAPVD1	26130	broad.mit.edu	36	9	127128671	127128671	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015635	exon10	c.C2014T	p.R672C	.	.	.
GAPVD1	26130	broad.mit.edu	36	9	127137322	127137322	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015635	exon14	c.G2479T	p.E827X	.	.	.
FAM125B	89853	broad.mit.edu	36	9	128197722	128197722	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001011703	exon6	c.G587T	p.R196I	.	.	.
ZBTB43	23099	broad.mit.edu	36	9	128635707	128635707	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135776	exon2	c.C1098A	p.F366L	.	.	.
ZBTB34	403341	broad.mit.edu	36	9	128682406	128682406	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099270	exon2	c.T895G	p.F299V	.	.	.
RALGPS1	9649	broad.mit.edu	36	9	128871362	128871362	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014636	exon8	c.G516T	p.E172D	.	.	.
ZNF79	7633	broad.mit.edu	36	9	129246340	129246340	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007135	exon5	c.G540T	p.K180N	.	.	.
SH2D3C	10044	broad.mit.edu	36	9	129549252	129549252	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142532	exon5	c.G197T	p.S66I	.	.	.
ST6GALNAC4	27090	broad.mit.edu	36	9	129714373	129714373	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175039	exon4	c.G606T	p.K202N	.	.	.
CIZ1	25792	broad.mit.edu	36	9	129971601	129971601	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001131015	exon14	c.C1882T	p.R628X	.	.	.
DNM1	1759	broad.mit.edu	36	9	130041580	130041580	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001005336	exon12	c.G1458T	p.M486I	.	.	.
ODF2	4957	broad.mit.edu	36	9	130273518	130273518	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153439	exon5	c.G606A	p.T202T	.	.	.
SPTAN1	6709	broad.mit.edu	36	9	130369011	130369011	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001195532	exon2	c.G171T	p.E57D	.	.	.
SPTAN1	6709	broad.mit.edu	36	9	130414284	130414284	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195532	exon37	c.G4906T	p.E1636X	.	.	.
SPTAN1	6709	broad.mit.edu	36	9	130419792	130419792	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195532	exon40	c.G5335A	p.V1779M	.	.	.
NUP188	23511	broad.mit.edu	36	9	130807295	130807295	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015354	exon39	c.C4483T	p.R1495X	.	.	.
MPDZ	8777	broad.mit.edu	36	9	13097075	13097075	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003829	exon45	c.C6015T	p.G2005G	.	.	.
MPDZ	8777	broad.mit.edu	36	9	13116572	13116572	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003829	exon33	c.C4575T	p.V1525V	.	.	.
ASB6	140459	broad.mit.edu	36	9	131440118	131440118	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017873	exon6	c.C1038T	p.F346F	.	.	.
TOR1A	1861	broad.mit.edu	36	9	131620999	131620999	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000113	exon3	c.C466T	p.R156X	.	.	.
USP20	10868	broad.mit.edu	36	9	131660177	131660177	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008563	exon5	c.G163T	p.E55X	.	.	.
USP20	10868	broad.mit.edu	36	9	131670123	131670123	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001008563	exon11	c.C709T	p.R237C	.	.	.
FNBP1	23048	broad.mit.edu	36	9	131760615	131760615	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015033	exon5	c.G384T	p.E128D	.	.	.
MPDZ	8777	broad.mit.edu	36	9	13176340	13176340	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003829	exon17	c.C2410A	p.L804I	.	.	.
ASS1	445	broad.mit.edu	36	9	132344952	132344952	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000050	exon11	c.G717T	p.K239N	.	.	.
PRDM12	59335	broad.mit.edu	36	9	132533459	132533459	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021619	exon3	c.G508A	p.E170K	.	.	.
EXOSC2	23404	broad.mit.edu	36	9	132568300	132568300	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014285	exon8	c.C712T	p.R238W	.	.	.
ABL1	25	broad.mit.edu	36	9	132719390	132719390	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005157	exon2	c.C198T	p.F66F	.	.	.
LAMC3	10319	broad.mit.edu	36	9	132910856	132910856	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006059	exon8	c.G1507A	p.D503N	.	.	.
LAMC3	10319	broad.mit.edu	36	9	132936805	132936805	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006059	exon18	c.C3183T	p.D1061D	.	.	.
NUP214	8021	broad.mit.edu	36	9	133015583	133015583	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005085	exon15	c.G2092T	p.D698Y	.	.	.
NUP214	8021	broad.mit.edu	36	9	133066857	133066857	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005085	exon30	c.T5524A	p.F1842I	.	.	.
FAM78A	286336	broad.mit.edu	36	9	133126147	133126147	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033387	exon2	c.G735T	p.K245N	.	.	.
BAT2L1	84726	broad.mit.edu	36	9	133311804	133311804	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013318	exon6	c.G809A	p.G270E	.	.	.
BAT2L1	84726	broad.mit.edu	36	9	133340797	133340797	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013318	exon15	c.G3460A	p.E1154K	.	.	.
BAT2L1	84726	broad.mit.edu	36	9	133343781	133343781	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013318	exon17	c.G4712A	p.R1571H	.	.	.
UCK1	83549	broad.mit.edu	36	9	133394749	133394749	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031432	exon3	c.C312T	p.I104I	.	.	.
RAPGEF1	2889	broad.mit.edu	36	9	133455123	133455123	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198679	exon16	c.C2334T	p.F778F	.	.	.
RAPGEF1	2889	broad.mit.edu	36	9	133491192	133491192	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198679	exon10	c.C1643T	p.A548V	.	.	.
RAPGEF1	2889	broad.mit.edu	36	9	133516072	133516072	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198679	exon2	c.G150T	p.K50N	.	.	.
MED27	9442	broad.mit.edu	36	9	133944917	133944917	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004269	exon1	c.G136A	p.E46K	.	.	.
SETX	23064	broad.mit.edu	36	9	134162217	134162217	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015046	exon14	c.G5827T	p.E1943X	.	.	.
SETX	23064	broad.mit.edu	36	9	134193056	134193056	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015046	exon10	c.A3750C	p.K1250N	.	.	.
SETX	23064	broad.mit.edu	36	9	134193852	134193852	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015046	exon10	c.C2954T	p.S985L	.	.	.
TTF1	7270	broad.mit.edu	36	9	134261664	134261664	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007344	exon5	c.C1833T	p.F611F	.	.	.
TTF1	7270	broad.mit.edu	36	9	134267477	134267477	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007344	exon2	c.G553A	p.D185N	.	.	.
DDX31	64794	broad.mit.edu	36	9	134511144	134511144	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022779	exon13	c.C1654T	p.R552X	.	.	.
GTF3C4	9329	broad.mit.edu	36	9	134543226	134543226	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012204	exon2	c.C399T	p.F133F	.	.	.
GTF3C4	9329	broad.mit.edu	36	9	134548862	134548862	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012204	exon3	c.G2276A	p.R759H	.	.	.
TSC1	7248	broad.mit.edu	36	9	134761754	134761754	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001162426	exon23	c.C3181T	p.R1061W	.	.	.
GFI1B	8328	broad.mit.edu	36	9	134854274	134854274	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004188	exon5	c.C516A	p.F172L	.	.	.
GFI1B	8328	broad.mit.edu	36	9	134856243	134856243	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135031	exon6	c.G840T	p.Q280H	.	.	.
GTF3C5	9328	broad.mit.edu	36	9	134916053	134916053	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001122823	exon4	c.G635A	p.R212H	.	.	.
SARDH	1757	broad.mit.edu	36	9	135572367	135572367	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007101	exon8	c.A1052G	p.D351G	.	.	.
VAV2	7410	broad.mit.edu	36	9	135623467	135623467	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134398	exon29	c.C2507T	p.S836L	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136763306	136763306	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000093	exon8	c.G1308A	p.A436A	.	.	.
FCN2	2220	broad.mit.edu	36	9	136918117	136918117	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004108	exon7	c.G580T	p.D194Y	.	.	.
FCN1	2219	broad.mit.edu	36	9	136944776	136944776	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002003	exon6	c.G375T	p.G125G	.	.	.
FCN1	2219	broad.mit.edu	36	9	136946060	136946060	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002003	exon4	c.G299A	p.G100E	.	.	.
OLFM1	10439	broad.mit.edu	36	9	137129958	137129958	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014279	exon4	c.A408G	p.I136M	.	.	.
OBP2A	29991	broad.mit.edu	36	9	137578546	137578546	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014582	exon2	c.C174T	p.G58G	.	.	.
GLT6D1	360203	broad.mit.edu	36	9	137655874	137655874	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182974	exon5	c.G721T	p.D241Y	.	.	.
CAMSAP1	157922	broad.mit.edu	36	9	137843138	137843138	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015447	exon17	c.G4647T	p.K1549N	.	.	.
CAMSAP1	157922	broad.mit.edu	36	9	137852972	137852972	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015447	exon11	c.G3356A	p.R1119Q	.	.	.
UBAC1	10422	broad.mit.edu	36	9	137977988	137977988	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016172	exon5	c.G492T	p.Q164H	.	.	.
LCN10	414332	broad.mit.edu	36	9	138755604	138755604	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001712	exon3	c.C288A	p.I96I	.	.	.
LCN8	138307	broad.mit.edu	36	9	138770841	138770841	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178469	exon3	c.G180T	p.K60N	.	.	.
CACNA1B	774	broad.mit.edu	36	9	139897077	139897077	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000718	exon3	c.G451A	p.A151T	.	.	.
CACNA1B	774	broad.mit.edu	36	9	139931576	139931576	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000718	exon6	c.G838A	p.D280N	.	.	.
NFIB	4781	broad.mit.edu	36	9	14297498	14297498	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001190738	exon2	c.G130A	p.E44K	.	.	.
ZDHHC21	340481	broad.mit.edu	36	9	14609085	14609085	+	Missense_Mutation	SNP	C	T	T	rs61752940	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178566	exon10	c.G677A	p.R226Q	.	.	.
ZDHHC21	340481	broad.mit.edu	36	9	14652297	14652297	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178566	exon6	c.A281C	p.K94T	.	.	.
FREM1	158326	broad.mit.edu	36	9	14746379	14746379	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144966	exon30	c.T5400C	p.F1800F	.	.	.
FREM1	158326	broad.mit.edu	36	9	14749770	14749770	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144966	exon29	c.G5334T	p.K1778N	.	.	.
FREM1	158326	broad.mit.edu	36	9	14791729	14791729	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144966	exon21	c.C3615A	p.F1205L	.	.	.
FREM1	158326	broad.mit.edu	36	9	14806814	14806814	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144966	exon16	c.G2602A	p.D868N	.	.	.
FREM1	158326	broad.mit.edu	36	9	14841562	14841562	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144966	exon7	c.C872T	p.P291L	.	.	.
FREM1	158326	broad.mit.edu	36	9	14853874	14853874	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144966	exon4	c.G262A	p.E88K	.	.	.
TTC39B	158219	broad.mit.edu	36	9	15178039	15178039	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001168340	exon13	c.T1286C	p.V429A	.	.	.
SNAPC3	6619	broad.mit.edu	36	9	15413915	15413915	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039697	exon2	c.A323C	p.K108T	.	.	.
SNAPC3	6619	broad.mit.edu	36	9	15434628	15434628	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039697	exon4	c.A506C	p.E169A	.	.	.
C9orf93	203238	broad.mit.edu	36	9	15714841	15714841	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173550	exon14	c.G1559A	p.R520Q	.	.	.
C9orf93	203238	broad.mit.edu	36	9	15774546	15774546	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173550	exon21	c.G3121T	p.E1041X	.	.	.
CNTLN	54875	broad.mit.edu	36	9	17133295	17133295	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017738	exon2	c.G370A	p.E124K	.	.	.
CNTLN	54875	broad.mit.edu	36	9	17225695	17225695	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017738	exon4	c.A574C	p.K192Q	.	.	.
CNTLN	54875	broad.mit.edu	36	9	17320716	17320716	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017738	exon9	c.G1428T	p.K476N	.	.	.
CNTLN	54875	broad.mit.edu	36	9	17384581	17384581	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017738	exon15	c.A2129C	p.K710T	.	.	.
FAM154A	158297	broad.mit.edu	36	9	18918824	18918824	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153707	exon4	c.G651T	p.E217D	.	.	.
PLIN2	123	broad.mit.edu	36	9	19108436	19108436	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001122	exon7	c.G795T	p.K265N	.	.	.
DENND4C	55667	broad.mit.edu	36	9	19336864	19336864	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017925	exon18	c.G3242A	p.R1081Q	.	.	.
SMARCA2	6595	broad.mit.edu	36	9	2022957	2022957	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139045	exon3	c.C231T	p.I77I	.	.	.
MLLT3	4300	broad.mit.edu	36	9	20353483	20353483	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004529	exon7	c.G1322A	p.R441Q	.	.	.
SMARCA2	6595	broad.mit.edu	36	9	2050894	2050894	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139045	exon9	c.G1600A	p.D534N	.	.	.
SMARCA2	6595	broad.mit.edu	36	9	2076832	2076832	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139045	exon18	c.C2530T	p.R844W	.	.	.
KIAA1797	54914	broad.mit.edu	36	9	20810345	20810345	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017794	exon15	c.G1583A	p.R528Q	.	.	.
IFNA10	3446	broad.mit.edu	36	9	21197035	21197035	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002171	exon1	c.C62A	p.S21Y	.	.	.
IFNA14	3448	broad.mit.edu	36	9	21229629	21229629	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002172	exon1	c.G306A	p.E102E	.	.	.
KLHL9	55958	broad.mit.edu	36	9	21323736	21323736	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018847	exon1	c.C1123T	p.R375W	.	.	.
IFNA2	3440	broad.mit.edu	36	9	21374886	21374886	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000605	exon1	c.G443T	p.R148I	.	.	.
IFNE	338376	broad.mit.edu	36	9	21471453	21471453	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176891	exon1	c.C241A	p.L81I	.	.	.
ELAVL2	1993	broad.mit.edu	36	9	23752156	23752156	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171197	exon2	c.C77T	p.S26L	.	.	.
VLDLR	7436	broad.mit.edu	36	9	2638774	2638774	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001018056	exon14	c.G2068T	p.D690Y	.	.	.
KCNV2	169522	broad.mit.edu	36	9	2719545	2719545	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133497	exon2	c.G1456A	p.G486R	.	.	.
IFNK	56832	broad.mit.edu	36	9	27514857	27514857	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020124	exon1	c.G523T	p.E175X	.	.	.
LINGO2	158038	broad.mit.edu	36	9	27940633	27940633	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152570	exon7	c.C37A	p.L13M	.	.	.
KIAA0020	9933	broad.mit.edu	36	9	2827247	2827247	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014878	exon3	c.G237T	p.K79N	.	.	.
DDX58	23586	broad.mit.edu	36	9	32456353	32456353	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014314	exon16	c.G2272T	p.E758X	.	.	.
DDX58	23586	broad.mit.edu	36	9	32483818	32483818	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014314	exon3	c.G364A	p.D122N	.	.	.
TOPORS	10210	broad.mit.edu	36	9	32532594	32532594	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195622	exon2	c.A1734C	p.K578N	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32621214	32621214	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153809	exon1	c.A4364C	p.K1455T	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32622006	32622006	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153809	exon1	c.G3572A	p.R1191Q	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32624895	32624895	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153809	exon1	c.C683T	p.T228I	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32624963	32624963	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153809	exon1	c.C615A	p.Y205X	.	.	.
DNAJA1	3301	broad.mit.edu	36	9	33016823	33016823	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001539	exon3	c.T145G	p.S49A	.	.	.
CHMP5	51510	broad.mit.edu	36	9	33256076	33256076	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001195536	exon2	c.G138T	p.K46N	.	.	.
NFX1	4799	broad.mit.edu	36	9	33284529	33284529	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_147134	exon2	c.G137T	p.R46I	.	.	.
NFX1	4799	broad.mit.edu	36	9	33285406	33285406	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_147134	exon2	c.G1014T	p.K338N	.	.	.
AQP3	360	broad.mit.edu	36	9	33433768	33433768	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004925	exon2	c.C231A	p.V77V	.	.	.
UBAP2	55833	broad.mit.edu	36	9	33912582	33912582	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018449	exon29	c.C3280T	p.R1094C	.	.	.
UBAP2	55833	broad.mit.edu	36	9	33946100	33946100	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018449	exon11	c.G843T	p.E281D	.	.	.
UBAP2	55833	broad.mit.edu	36	9	34007093	34007093	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018449	exon2	c.G54T	p.Q18H	.	.	.
DCAF12	25853	broad.mit.edu	36	9	34115241	34115241	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015397	exon2	c.G113T	p.R38I	.	.	.
KIF24	347240	broad.mit.edu	36	9	34280240	34280240	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_194313	exon5	c.C1059T	p.L353L	.	.	.
C9orf25	203259	broad.mit.edu	36	9	34395953	34395953	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_147202	exon2	c.G70A	p.A24T	.	.	.
DNAI1	27019	broad.mit.edu	36	9	34480025	34480025	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012144	exon6	c.T404C	p.V135A	.	.	.
CNTFR	1271	broad.mit.edu	36	9	34542808	34542808	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_147164	exon8	c.C813T	p.Y271Y	.	.	.
ARID3C	138715	broad.mit.edu	36	9	34612066	34612066	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001017363	exon6	c.C1089T	p.G363G	.	.	.
KIAA1045	23349	broad.mit.edu	36	9	34961626	34961626	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015297	exon2	c.C331A	p.L111M	.	.	.
VCP	7415	broad.mit.edu	36	9	35056724	35056724	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007126	exon4	c.C393T	p.F131F	.	.	.
FANCG	2189	broad.mit.edu	36	9	35064137	35064137	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004629	exon14	c.C1837T	p.R613W	.	.	.
FANCG	2189	broad.mit.edu	36	9	35065282	35065282	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004629	exon11	c.G1474T	p.E492X	.	.	.
PIGO	84720	broad.mit.edu	36	9	35083113	35083113	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032634	exon6	c.G1033A	p.A345T	.	.	.
STOML2	30968	broad.mit.edu	36	9	35090048	35090048	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013442	exon10	c.G1055A	p.R352Q	.	.	.
STOML2	30968	broad.mit.edu	36	9	35091799	35091799	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013442	exon5	c.G352A	p.G118S	.	.	.
KIAA1539	80256	broad.mit.edu	36	9	35095274	35095274	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025182	exon9	c.G1561A	p.E521K	.	.	.
UNC13B	10497	broad.mit.edu	36	9	35226517	35226517	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006377	exon4	c.A204G	p.G68G	.	.	.
UNC13B	10497	broad.mit.edu	36	9	35285718	35285718	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006377	exon8	c.C552T	p.V184V	.	.	.
UNC13B	10497	broad.mit.edu	36	9	35393824	35393824	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006377	exon39	c.C4570T	p.R1524C	.	.	.
RUSC2	9853	broad.mit.edu	36	9	35550483	35550483	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014806	exon10	c.C3846T	p.I1282I	.	.	.
CD72	971	broad.mit.edu	36	9	35606244	35606244	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001782	exon5	c.G384A	p.T128T	.	.	.
TLN1	7094	broad.mit.edu	36	9	35707171	35707171	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006289	exon19	c.G2430T	p.E810D	.	.	.
RGP1	9827	broad.mit.edu	36	9	35740881	35740881	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080496	exon5	c.C382T	p.R128W	.	.	.
NPR2	4882	broad.mit.edu	36	9	35783932	35783932	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003995	exon2	c.G705T	p.E235D	.	.	.
C9orf128	392307	broad.mit.edu	36	9	35815819	35815819	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012446	exon2	c.G340T	p.D114Y	.	.	.
OR2S2	56656	broad.mit.edu	36	9	35947487	35947487	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019897	exon1	c.G609A	p.T203T	.	.	.
RECK	8434	broad.mit.edu	36	9	36090335	36090335	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021111	exon11	c.G1093T	p.E365X	.	.	.
CLTA	1211	broad.mit.edu	36	9	36194074	36194074	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184760	exon4	c.C383A	p.S128Y	.	.	.
MELK	9833	broad.mit.edu	36	9	36623110	36623110	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014791	exon10	c.G747T	p.K249N	.	.	.
MELK	9833	broad.mit.edu	36	9	36655465	36655465	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014791	exon14	c.C1295T	p.A432V	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37722310	37722310	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014907	exon10	c.G868A	p.D290N	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37725605	37725605	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014907	exon13	c.C1275T	p.S425S	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37730134	37730134	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014907	exon15	c.G1609A	p.E537K	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37730686	37730686	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014907	exon15	c.G2161T	p.D721Y	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37735265	37735265	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014907	exon16	c.G3236T	p.R1079I	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37736027	37736027	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014907	exon16	c.A3998C	p.Q1333P	.	.	.
ALDH1B1	219	broad.mit.edu	36	9	38386266	38386266	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000692	exon2	c.A521C	p.E174A	.	.	.
GLIS3	169792	broad.mit.edu	36	9	3846069	3846069	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152629	exon8	c.C1948T	p.L650L	.	.	.
CNTNAP3	79937	broad.mit.edu	36	9	39167400	39167400	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033655	exon6	c.A842G	p.D281G	.	.	.
DOCK8	81704	broad.mit.edu	36	9	396981	396981	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001190458	exon26	c.G3142A	p.D1048N	.	.	.
ZNF658	26149	broad.mit.edu	36	9	40762822	40762822	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033160	exon5	c.G2453T	p.R818I	.	.	.
GLIS3	169792	broad.mit.edu	36	9	4108183	4108183	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152629	exon3	c.G830A	p.R277H	.	.	.
DOCK8	81704	broad.mit.edu	36	9	429338	429338	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001190458	exon38	c.G4873A	p.E1625K	.	.	.
DOCK8	81704	broad.mit.edu	36	9	431899	431899	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001190458	exon40	c.T5080C	p.Y1694H	.	.	.
PPAPDC2	403313	broad.mit.edu	36	9	4652720	4652720	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_203453	exon1	c.G345T	p.K115N	.	.	.
JAK2	3717	broad.mit.edu	36	9	5054899	5054899	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004972	exon9	c.C1073A	p.S358X	.	.	.
JAK2	3717	broad.mit.edu	36	9	5059145	5059145	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004972	exon11	c.G1450A	p.E484K	.	.	.
RLN1	6013	broad.mit.edu	36	9	5325270	5325270	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006911	exon2	c.C539A	p.S180Y	.	.	.
CD274	29126	broad.mit.edu	36	9	5456805	5456805	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014143	exon6	c.G826T	p.D276Y	.	.	.
KIAA1432	57589	broad.mit.edu	36	9	5762740	5762740	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020829	exon23	c.C3556T	p.R1186W	.	.	.
ERMP1	79956	broad.mit.edu	36	9	5802130	5802130	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024896	exon6	c.G1109T	p.R370I	.	.	.
MLANA	2315	broad.mit.edu	36	9	5887569	5887569	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005511	exon3	c.C90T	p.I30I	.	.	.
MLANA	2315	broad.mit.edu	36	9	5887631	5887631	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005511	exon3	c.G152A	p.R51Q	.	.	.
KIAA2026	158358	broad.mit.edu	36	9	5910353	5910353	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001017969	exon8	c.T5643C	p.S1881S	.	.	.
KIAA2026	158358	broad.mit.edu	36	9	5911062	5911062	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001017969	exon8	c.C4934A	p.S1645Y	.	.	.
KIAA2026	158358	broad.mit.edu	36	9	5912155	5912155	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001017969	exon8	c.C3841T	p.L1281F	.	.	.
KIAA2026	158358	broad.mit.edu	36	9	5912336	5912336	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001017969	exon8	c.C3660A	p.F1220L	.	.	.
RANBP6	26953	broad.mit.edu	36	9	6002674	6002674	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012416	exon1	c.G2934T	p.E978D	.	.	.
RANBP6	26953	broad.mit.edu	36	9	6005324	6005324	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012416	exon1	c.G284T	p.R95I	.	.	.
TPD52L3	89882	broad.mit.edu	36	9	6320998	6320998	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001874	exon2	c.G390A	p.T130T	.	.	.
GLDC	2731	broad.mit.edu	36	9	6594606	6594606	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000170	exon7	c.G1040T	p.R347I	.	.	.
ANKRD20A3	441425	broad.mit.edu	36	9	67528456	67528456	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012419	exon6	c.G771T	p.K257N	.	.	.
KDM4C	23081	broad.mit.edu	36	9	6870041	6870041	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146696	exon6	c.G725A	p.R242Q	.	.	.
KDM4C	23081	broad.mit.edu	36	9	7003848	7003848	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146696	exon14	c.A2095G	p.T699A	.	.	.
KANK1	23189	broad.mit.edu	36	9	701610	701610	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153186	exon2	c.C370T	p.R124X	.	.	.
PIP5K1B	8395	broad.mit.edu	36	9	70699138	70699138	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003558	exon8	c.G535T	p.G179X	.	.	.
PRKACG	5568	broad.mit.edu	36	9	70818697	70818697	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002732	exon1	c.C132T	p.F44F	.	.	.
APBA1	320	broad.mit.edu	36	9	71245843	71245843	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001163	exon11	c.G2190T	p.K730N	.	.	.
APBA1	320	broad.mit.edu	36	9	71256956	71256956	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001163	exon9	c.G1870A	p.E624K	.	.	.
APBA1	320	broad.mit.edu	36	9	71321182	71321182	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001163	exon2	c.C765T	p.F255F	.	.	.
SMC5	23137	broad.mit.edu	36	9	72083358	72083358	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015110	exon5	c.C675T	p.L225L	.	.	.
SMC5	23137	broad.mit.edu	36	9	72151884	72151884	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015110	exon20	c.G2651A	p.G884E	.	.	.
TRPM3	80036	broad.mit.edu	36	9	72341800	72341800	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007471	exon25	c.C4013A	p.S1338Y	.	.	.
TRPM3	80036	broad.mit.edu	36	9	72430014	72430014	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007471	exon13	c.C1686T	p.I562I	.	.	.
TRPM3	80036	broad.mit.edu	36	9	72430227	72430227	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024971	exon13	c.C1200A	p.I400I	.	.	.
TMEM2	23670	broad.mit.edu	36	9	73505547	73505547	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013390	exon19	c.C3208T	p.R1070X	.	.	.
TMEM2	23670	broad.mit.edu	36	9	73544836	73544836	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013390	exon5	c.G1167T	p.Q389H	.	.	.
TMEM2	23670	broad.mit.edu	36	9	73550005	73550005	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013390	exon4	c.G783T	p.K261N	.	.	.
TMEM2	23670	broad.mit.edu	36	9	73550210	73550210	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013390	exon4	c.A578C	p.K193T	.	.	.
GDA	9615	broad.mit.edu	36	9	74032729	74032729	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004293	exon9	c.C873T	p.F291F	.	.	.
ALDH1A1	216	broad.mit.edu	36	9	74714421	74714421	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000689	exon11	c.C1275A	p.F425L	.	.	.
RORB	6096	broad.mit.edu	36	9	76447397	76447397	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006914	exon4	c.T483C	p.G161G	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76529473	76529473	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001177310	exon39	c.G5930T	p.R1977I	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76587475	76587475	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001177310	exon22	c.G3019T	p.D1007Y	.	.	.
GCNT1	2650	broad.mit.edu	36	9	78307362	78307362	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001097635	exon3	c.T245G	p.F82C	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78511091	78511091	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015225	exon8	c.C5919A	p.A1973A	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78511832	78511832	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015225	exon8	c.C5178A	p.F1726L	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78512012	78512012	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015225	exon8	c.A4998G	p.E1666E	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79010714	79010714	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001018037	exon5	c.G284T	p.R95I	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79014219	79014219	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001018037	exon6	c.A446C	p.K149T	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79024735	79024735	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001018037	exon11	c.G800A	p.R267Q	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79086914	79086914	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001018037	exon29	c.A3022C	p.N1008H	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79098223	79098223	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001018037	exon31	c.G3369A	p.T1123T	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79208000	79208000	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001018037	exon68	c.A9101G	p.Y3034C	.	.	.
GNA14	9630	broad.mit.edu	36	9	79333918	79333918	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004297	exon2	c.G196A	p.E66K	.	.	.
GNAQ	2776	broad.mit.edu	36	9	79526220	79526220	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002072	exon7	c.G919T	p.E307X	.	.	.
CEP78	84131	broad.mit.edu	36	9	80053033	80053033	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098802	exon7	c.C899A	p.S300Y	.	.	.
PSAT1	29968	broad.mit.edu	36	9	80106739	80106739	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_058179	exon3	c.G171T	p.E57D	.	.	.
TLE4	7091	broad.mit.edu	36	9	81526539	81526539	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007005	exon17	c.C1902A	p.L634L	.	.	.
FAM75D1	389763	broad.mit.edu	36	9	83798455	83798455	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001670	exon4	c.G3250A	p.D1084N	.	.	.
FAM75D1	389763	broad.mit.edu	36	9	83799475	83799475	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001670	exon4	c.G4270T	p.D1424Y	.	.	.
RASEF	158158	broad.mit.edu	36	9	84805759	84805759	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152573	exon10	c.G1309A	p.D437N	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8508036	8508036	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040712	exon9	c.G1346T	p.R449I	.	.	.
FRMD3	257019	broad.mit.edu	36	9	85140262	85140262	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_174938	exon6	c.A585G	p.K195K	.	.	.
FRMD3	257019	broad.mit.edu	36	9	85148002	85148002	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_174938	exon5	c.T395G	p.I132S	.	.	.
KIF27	55582	broad.mit.edu	36	9	85642019	85642019	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017576	exon18	c.C3923A	p.S1308Y	.	.	.
KIF27	55582	broad.mit.edu	36	9	85646996	85646996	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017576	exon17	c.C3697T	p.R1233W	.	.	.
KIF27	55582	broad.mit.edu	36	9	85704518	85704518	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017576	exon5	c.G1480T	p.V494L	.	.	.
RMI1	80010	broad.mit.edu	36	9	85806496	85806496	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024945	exon3	c.G775A	p.A259T	.	.	.
RMI1	80010	broad.mit.edu	36	9	85806978	85806978	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024945	exon3	c.G1257T	p.K419N	.	.	.
AGTPBP1	23287	broad.mit.edu	36	9	87351891	87351891	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015239	exon26	c.G3514T	p.E1172X	.	.	.
AGTPBP1	23287	broad.mit.edu	36	9	87451094	87451094	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015239	exon12	c.G1027A	p.E343K	.	.	.
AGTPBP1	23287	broad.mit.edu	36	9	87482182	87482182	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015239	exon6	c.T425A	p.I142N	.	.	.
AGTPBP1	23287	broad.mit.edu	36	9	87497449	87497449	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015239	exon3	c.A132C	p.K44N	.	.	.
NAA35	60560	broad.mit.edu	36	9	87747006	87747006	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024635	exon2	c.G112T	p.E38X	.	.	.
NAA35	60560	broad.mit.edu	36	9	87783010	87783010	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024635	exon11	c.T771C	p.A257A	.	.	.
GOLM1	51280	broad.mit.edu	36	9	87841099	87841099	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_177937	exon7	c.G741T	p.K247N	.	.	.
ZCCHC6	79670	broad.mit.edu	36	9	88113275	88113275	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024617	exon22	c.C3727T	p.R1243C	.	.	.
ZCCHC6	79670	broad.mit.edu	36	9	88150447	88150447	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024617	exon4	c.C776T	p.A259V	.	.	.
C9orf170	401535	broad.mit.edu	36	9	88953573	88953573	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001709	exon1	c.C108T	p.L36L	.	.	.
C9orf170	401535	broad.mit.edu	36	9	88961397	88961397	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001709	exon2	c.C258T	p.S86S	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89504934	89504934	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004938	exon24	c.C2833T	p.R945X	.	.	.
CTSL1	1514	broad.mit.edu	36	9	89534460	89534460	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145918	exon6	c.C774A	p.F258L	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89690921	89690921	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178828	exon4	c.C1699A	p.L567I	.	.	.
S1PR3	1903	broad.mit.edu	36	9	90806442	90806442	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005226	exon2	c.C507T	p.G169G	.	.	.
S1PR3	1903	broad.mit.edu	36	9	90806784	90806784	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005226	exon2	c.C849A	p.F283L	.	.	.
SEMA4D	10507	broad.mit.edu	36	9	91192299	91192299	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142287	exon14	c.G1152T	p.L384F	.	.	.
DIRAS2	54769	broad.mit.edu	36	9	92415626	92415626	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017594	exon2	c.G304A	p.E102K	.	.	.
SYK	6850	broad.mit.edu	36	9	92689990	92689990	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001174168	exon11	c.C1651T	p.R551X	.	.	.
NFIL3	4783	broad.mit.edu	36	9	93211634	93211634	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005384	exon2	c.G1204T	p.E402X	.	.	.
ROR2	4920	broad.mit.edu	36	9	93526583	93526583	+	Missense_Mutation	SNP	C	T	T	rs55651110	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004560	exon9	c.G2014A	p.D672N	.	.	.
ROR2	4920	broad.mit.edu	36	9	93558180	93558180	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004560	exon4	c.A488C	p.N163T	.	.	.
NOL8	55035	broad.mit.edu	36	9	94099983	94099983	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017948	exon17	c.C3460T	p.R1154X	.	.	.
OGN	4969	broad.mit.edu	36	9	94192142	94192142	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014057	exon5	c.G445A	p.D149N	.	.	.
OMD	4958	broad.mit.edu	36	9	94217515	94217515	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005014	exon3	c.C1006T	p.R336C	.	.	.
ZNF484	83744	broad.mit.edu	36	9	94649538	94649538	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007101	exon4	c.A1244C	p.K415T	.	.	.
ZNF484	83744	broad.mit.edu	36	9	94650603	94650603	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001007101	exon4	c.C179A	p.S60Y	.	.	.
FAM120A	23196	broad.mit.edu	36	9	95300927	95300927	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014612	exon5	c.G968T	p.R323I	.	.	.
FAM120A	23196	broad.mit.edu	36	9	95331680	95331680	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014612	exon9	c.G1731A	p.T577T	.	.	.
PTPDC1	138639	broad.mit.edu	36	9	95899502	95899502	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152422	exon6	c.G827A	p.R276Q	.	.	.
PTPDC1	138639	broad.mit.edu	36	9	95899957	95899957	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152422	exon6	c.C1282T	p.R428W	.	.	.
FAM22F	54754	broad.mit.edu	36	9	96121756	96121756	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017561	exon6	c.G1445T	p.S482I	.	.	.
FBP2	8789	broad.mit.edu	36	9	96373659	96373659	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003837	exon4	c.G473A	p.R158H	.	.	.
PTCH1	5727	broad.mit.edu	36	9	97278154	97278154	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001083605	exon12	c.C1258T	p.R420W	.	.	.
C9orf102	375748	broad.mit.edu	36	9	97723299	97723299	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010895	exon7	c.G1213T	p.D405Y	.	.	.
DMRT3	58524	broad.mit.edu	36	9	980838	980838	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021240	exon2	c.G1252A	p.V418I	.	.	.
SLC35D2	11046	broad.mit.edu	36	9	98146084	98146084	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007001	exon8	c.G607A	p.G203R	.	.	.
HABP4	22927	broad.mit.edu	36	9	98267513	98267513	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014282	exon3	c.G586T	p.G196C	.	.	.
CDC14B	8555	broad.mit.edu	36	9	98325486	98325486	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077181	exon11	c.C1012T	p.R338C	.	.	.
ZNF510	22869	broad.mit.edu	36	9	98561142	98561142	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014930	exon6	c.G1791T	p.E597D	.	.	.
ZNF782	158431	broad.mit.edu	36	9	98621207	98621207	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001662	exon6	c.C919A	p.H307N	.	.	.
ZNF782	158431	broad.mit.edu	36	9	98621386	98621386	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001662	exon6	c.A740C	p.K247T	.	.	.
CTSL2	1515	broad.mit.edu	36	9	98837770	98837770	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001333	exon6	c.G648T	p.E216D	.	.	.
ZNF322B	387328	broad.mit.edu	36	9	99001237	99001237	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199005	exon1	c.C378A	p.F126L	.	.	.
LOC57653	57653	broad.mit.edu	36	9	99132440	99132440	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020893	exon18	c.C1976A	p.P659H	.	.	.
LOC57653	57653	broad.mit.edu	36	9	99132856	99132856	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020893	exon18	c.T2392G	p.L798V	.	.	.
LOC57653	57653	broad.mit.edu	36	9	99177582	99177582	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020893	exon36	c.G4864A	p.E1622K	.	.	.
TDRD7	23424	broad.mit.edu	36	9	99275617	99275617	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014290	exon11	c.T1967G	p.V656G	.	.	.
TDRD7	23424	broad.mit.edu	36	9	99285430	99285430	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014290	exon15	c.T2891C	p.V964A	.	.	.
TMOD1	7111	broad.mit.edu	36	9	99368054	99368054	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166116	exon7	c.C722T	p.A241V	.	.	.
TSTD2	158427	broad.mit.edu	36	9	99413799	99413799	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139246	exon5	c.C607T	p.R203X	.	.	.
NCBP1	4686	broad.mit.edu	36	9	99471013	99471013	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002486	exon21	c.G2081A	p.R694Q	.	.	.
C9orf156	51531	broad.mit.edu	36	9	99712283	99712283	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016481	exon4	c.G846T	p.E282D	.	.	.
C9orf156	51531	broad.mit.edu	36	9	99712606	99712606	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016481	exon4	c.G523T	p.D175Y	.	.	.
HEMGN	55363	broad.mit.edu	36	9	99729519	99729519	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_197978	exon4	c.G1423T	p.E475X	.	.	.
HEMGN	55363	broad.mit.edu	36	9	99733280	99733280	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_197978	exon3	c.G218A	p.R73Q	.	.	.
NANS	54187	broad.mit.edu	36	9	99885144	99885144	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018946	exon6	c.A1066C	p.K356Q	.	.	.
CORO2A	7464	broad.mit.edu	36	9	99930779	99930779	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003389	exon9	c.C1011A	p.I337I	.	.	.
NALCN	259232	broad.mit.edu	36	13	100558102	100558102	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052867	exon21	c.G2404T	p.D802Y	.	.	.
NALCN	259232	broad.mit.edu	36	13	100827340	100827340	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052867	exon5	c.G444T	p.L148L	.	.	.
ITGBL1	9358	broad.mit.edu	36	13	101029703	101029703	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004791	exon5	c.A651C	p.E217D	.	.	.
FGF14	2259	broad.mit.edu	36	13	101366819	101366819	+	Intron	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004115	exon1	c.A178G	p.R60G	.	.	.
FGF14	2259	broad.mit.edu	36	13	101851934	101851934	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175929	exon1	c.G96T	p.L32L	.	.	.
TPP2	7174	broad.mit.edu	36	13	102078246	102078246	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003291	exon8	c.C987T	p.Y329Y	.	.	.
TPP2	7174	broad.mit.edu	36	13	102086612	102086612	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003291	exon13	c.C1547A	p.S516X	.	.	.
TPP2	7174	broad.mit.edu	36	13	102115231	102115231	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003291	exon26	c.T3287G	p.I1096S	.	.	.
C13orf27	93081	broad.mit.edu	36	13	102217755	102217755	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138779	exon5	c.C373T	p.R125W	.	.	.
KDELC1	79070	broad.mit.edu	36	13	102238229	102238229	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024089	exon8	c.C1339A	p.L447I	.	.	.
KDELC1	79070	broad.mit.edu	36	13	102241321	102241321	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024089	exon6	c.C1014T	p.F338F	.	.	.
ERCC5	2073	broad.mit.edu	36	13	102257699	102257699	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017693	exon3	c.G81T	p.E27D	.	.	.
ERCC5	2073	broad.mit.edu	36	13	102322736	102322736	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000123	exon13	c.G2866A	p.D956N	.	.	.
EFNB2	1948	broad.mit.edu	36	13	105945257	105945257	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004093	exon4	c.A586G	p.T196A	.	.	.
LIG4	3981	broad.mit.edu	36	13	107659528	107659528	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002312	exon2	c.C2090T	p.T697M	.	.	.
ABHD13	84945	broad.mit.edu	36	13	107679743	107679743	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032859	exon2	c.A176C	p.K59T	.	.	.
TNFSF13B	10673	broad.mit.edu	36	13	107757225	107757225	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145645	exon5	c.G739T	p.E247X	.	.	.
MYO16	23026	broad.mit.edu	36	13	108502803	108502803	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001198950	exon25	c.G3027T	p.K1009N	.	.	.
MYO16	23026	broad.mit.edu	36	13	108505771	108505771	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198950	exon27	c.G3162T	p.Q1054H	.	.	.
MYO16	23026	broad.mit.edu	36	13	108570792	108570792	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198950	exon29	c.G3512T	p.R1171I	.	.	.
MYO16	23026	broad.mit.edu	36	13	108575578	108575578	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198950	exon30	c.A3653G	p.Y1218C	.	.	.
COL4A1	1282	broad.mit.edu	36	13	109645386	109645386	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001845	exon22	c.G1366A	p.E456K	.	.	.
C13orf16	121793	broad.mit.edu	36	13	110778556	110778556	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152324	exon3	c.T84G	p.I28M	.	.	.
C13orf28	122258	broad.mit.edu	36	13	112134766	112134766	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145248	exon6	c.T453G	p.N151K	.	.	.
TUBGCP3	10426	broad.mit.edu	36	13	112267481	112267481	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006322	exon3	c.G197A	p.R66Q	.	.	.
ATP11A	23250	broad.mit.edu	36	13	112575935	112575935	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015205	exon27	c.C3105T	p.I1035I	.	.	.
F10	2159	broad.mit.edu	36	13	112851328	112851328	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000504	exon8	c.C963T	p.F321F	.	.	.
PCID2	55795	broad.mit.edu	36	13	112883493	112883493	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018386	exon10	c.G738T	p.K246N	.	.	.
CUL4A	8451	broad.mit.edu	36	13	112945300	112945300	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008895	exon11	c.C1053T	p.I351I	.	.	.
LAMP1	3916	broad.mit.edu	36	13	113022717	113022717	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005561	exon6	c.C807T	p.C269C	.	.	.
LAMP1	3916	broad.mit.edu	36	13	113023970	113023970	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005561	exon8	c.G1041A	p.T347T	.	.	.
ATP4B	496	broad.mit.edu	36	13	113355234	113355234	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000705	exon4	c.C510T	p.F170F	.	.	.
RASA3	22821	broad.mit.edu	36	13	113807864	113807864	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007368	exon8	c.G673A	p.E225K	.	.	.
CDC16	8881	broad.mit.edu	36	13	114042937	114042937	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001078645	exon14	c.C1276A	p.L426I	.	.	.
ZNF828	283489	broad.mit.edu	36	13	114107441	114107441	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164145	exon3	c.C22T	p.R8C	.	.	.
ZNF828	283489	broad.mit.edu	36	13	114108774	114108774	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164145	exon3	c.C1355A	p.S452Y	.	.	.
TPTE2	93492	broad.mit.edu	36	13	18923334	18923334	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001141968	exon10	c.G440A	p.R147Q	.	.	.
PSPC1	55269	broad.mit.edu	36	13	19231550	19231550	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042414	exon3	c.G683A	p.R228H	.	.	.
PSPC1	55269	broad.mit.edu	36	13	19244427	19244427	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042414	exon2	c.G629A	p.R210Q	.	.	.
ZMYM5	9205	broad.mit.edu	36	13	19297217	19297217	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142684	exon8	c.G1410T	p.Q470H	.	.	.
ZMYM5	9205	broad.mit.edu	36	13	19310858	19310858	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039650	exon5	c.G854A	p.R285Q	.	.	.
ZMYM5	9205	broad.mit.edu	36	13	19310933	19310933	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001039650	exon5	c.G779A	p.R260Q	.	.	.
GJB6	10804	broad.mit.edu	36	13	19695482	19695482	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006783	exon3	c.C138T	p.D46D	.	.	.
IFT88	8100	broad.mit.edu	36	13	20163282	20163282	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175605	exon28	c.G2470T	p.E824X	.	.	.
XPO4	64328	broad.mit.edu	36	13	20279614	20279614	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022459	exon13	c.G1799A	p.R600K	.	.	.
LATS2	26524	broad.mit.edu	36	13	20460238	20460238	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014572	exon4	c.G1681A	p.A561T	.	.	.
LATS2	26524	broad.mit.edu	36	13	20518068	20518068	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014572	exon2	c.C98T	p.S33L	.	.	.
SKA3	221150	broad.mit.edu	36	13	20640259	20640259	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166017	exon4	c.C611A	p.P204Q	.	.	.
ZDHHC20	253832	broad.mit.edu	36	13	20853619	20853619	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153251	exon11	c.A1011C	p.E337D	.	.	.
ZDHHC20	253832	broad.mit.edu	36	13	20872523	20872523	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153251	exon7	c.A583C	p.K195Q	.	.	.
SGCG	6445	broad.mit.edu	36	13	22675840	22675840	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000231	exon2	c.C7T	p.R3C	.	.	.
SGCG	6445	broad.mit.edu	36	13	22706842	22706842	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000231	exon3	c.C288A	p.H96Q	.	.	.
SGCG	6445	broad.mit.edu	36	13	22792856	22792856	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000231	exon7	c.C659T	p.A220V	.	.	.
SACS	26278	broad.mit.edu	36	13	22803110	22803110	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014363	exon10	c.C12905A	p.S4302Y	.	.	.
SACS	26278	broad.mit.edu	36	13	22803348	22803348	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014363	exon10	c.A12667C	p.K4223Q	.	.	.
SACS	26278	broad.mit.edu	36	13	22805021	22805021	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014363	exon10	c.G10994T	p.R3665I	.	.	.
SACS	26278	broad.mit.edu	36	13	22805090	22805090	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014363	exon10	c.G10925T	p.G3642V	.	.	.
SACS	26278	broad.mit.edu	36	13	22805566	22805566	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014363	exon10	c.A10449C	p.P3483P	.	.	.
SACS	26278	broad.mit.edu	36	13	22806736	22806736	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014363	exon10	c.G9279T	p.V3093V	.	.	.
SACS	26278	broad.mit.edu	36	13	22806898	22806898	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014363	exon10	c.A9117C	p.K3039N	.	.	.
SACS	26278	broad.mit.edu	36	13	22807113	22807113	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014363	exon10	c.C8902A	p.L2968I	.	.	.
SACS	26278	broad.mit.edu	36	13	22807694	22807694	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014363	exon10	c.G8321T	p.R2774I	.	.	.
SACS	26278	broad.mit.edu	36	13	22809196	22809196	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014363	exon10	c.A6819C	p.S2273S	.	.	.
SACS	26278	broad.mit.edu	36	13	22811102	22811102	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014363	exon10	c.G4913A	p.S1638N	.	.	.
SACS	26278	broad.mit.edu	36	13	22811434	22811434	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014363	exon10	c.T4581C	p.N1527N	.	.	.
SACS	26278	broad.mit.edu	36	13	22812615	22812615	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014363	exon10	c.G3400A	p.V1134I	.	.	.
SACS	26278	broad.mit.edu	36	13	22813071	22813071	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014363	exon10	c.A2944C	p.K982Q	.	.	.
SACS	26278	broad.mit.edu	36	13	22827770	22827770	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014363	exon8	c.G981T	p.E327D	.	.	.
MIPEP	4285	broad.mit.edu	36	13	23232343	23232343	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005932	exon17	c.G1862A	p.R621Q	.	.	.
MIPEP	4285	broad.mit.edu	36	13	23341524	23341524	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005932	exon7	c.G850T	p.E284X	.	.	.
PARP4	143	broad.mit.edu	36	13	23958323	23958323	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006437	exon11	c.C1335T	p.I445I	.	.	.
ATP12A	479	broad.mit.edu	36	13	24161463	24161463	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001185085	exon5	c.G496T	p.E166X	.	.	.
ATP12A	479	broad.mit.edu	36	13	24164635	24164635	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001185085	exon9	c.G1155T	p.V385V	.	.	.
ATP12A	479	broad.mit.edu	36	13	24166621	24166621	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001185085	exon11	c.A1435C	p.K479Q	.	.	.
ATP12A	479	broad.mit.edu	36	13	24170866	24170866	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001185085	exon12	c.G1601A	p.R534H	.	.	.
ATP12A	479	broad.mit.edu	36	13	24173049	24173049	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001185085	exon13	c.G1888A	p.A630T	.	.	.
RNF17	56163	broad.mit.edu	36	13	24260132	24260132	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184993	exon7	c.G618T	p.K206N	.	.	.
RNF17	56163	broad.mit.edu	36	13	24265367	24265367	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184993	exon10	c.A1123C	p.N375H	.	.	.
RNF17	56163	broad.mit.edu	36	13	24297853	24297853	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184993	exon16	c.G2188T	p.D730Y	.	.	.
RNF17	56163	broad.mit.edu	36	13	24316008	24316008	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001184993	exon20	c.T2730G	p.F910L	.	.	.
CENPJ	55835	broad.mit.edu	36	13	24355389	24355389	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018451	exon17	c.G3943T	p.E1315X	.	.	.
CENPJ	55835	broad.mit.edu	36	13	24371704	24371704	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018451	exon9	c.C2844T	p.F948F	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25027171	25027171	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016529	exon13	c.G1228A	p.A410T	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25053966	25053966	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016529	exon23	c.C2017A	p.L673I	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25433765	25433765	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016529	exon34	c.C3236A	p.P1079H	.	.	.
CDK8	1024	broad.mit.edu	36	13	25865555	25865555	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001260	exon7	c.T698G	p.I233R	.	.	.
USP12	219333	broad.mit.edu	36	13	26588731	26588731	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182488	exon2	c.C51T	p.G17G	.	.	.
LNX2	222484	broad.mit.edu	36	13	27025379	27025379	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153371	exon8	c.T1744C	p.S582P	.	.	.
FLT3	2322	broad.mit.edu	36	13	27499234	27499234	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004119	exon17	c.C2198A	p.P733Q	.	.	.
FLT3	2322	broad.mit.edu	36	13	27534159	27534160	+	Missense_Mutation	DNP	GC	TA	TA	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004119	exon3	c.212_213TA	.	.	.	.
PAN3	255967	broad.mit.edu	36	13	27739485	27739485	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175854	exon12	c.G1739A	p.S580N	.	.	.
PAN3	255967	broad.mit.edu	36	13	27749448	27749448	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175854	exon15	c.G2124T	p.E708D	.	.	.
PAN3	255967	broad.mit.edu	36	13	27760202	27760202	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_175854	exon18	c.G2466T	p.V822V	.	.	.
FLT1	2321	broad.mit.edu	36	13	27799613	27799613	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002019	exon20	c.T2782G	p.F928V	.	.	.
FLT1	2321	broad.mit.edu	36	13	27857097	27857097	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002019	exon14	c.G2041T	p.D681Y	.	.	.
SLC46A3	283537	broad.mit.edu	36	13	28185375	28185375	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181785	exon3	c.C502T	p.R168X	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28496891	28496891	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001033602	exon1	c.G86T	p.R29I	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28497124	28497124	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001033602	exon1	c.G319A	p.D107N	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28498045	28498045	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001033602	exon1	c.G1240T	p.G414X	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28498576	28498576	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001033602	exon1	c.T1771C	p.L591L	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28506168	28506168	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001033602	exon2	c.G2382T	p.R794S	.	.	.
SLC7A1	6541	broad.mit.edu	36	13	29005082	29005082	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003045	exon4	c.C408T	p.F136F	.	.	.
UBL3	5412	broad.mit.edu	36	13	29249348	29249348	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007106	exon2	c.C80A	p.S27Y	.	.	.
UBL3	5412	broad.mit.edu	36	13	29321672	29321672	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007106	exon1	c.T4C	p.S2P	.	.	.
HMGB1	3146	broad.mit.edu	36	13	29934768	29934768	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002128	exon4	c.G378A	p.A126A	.	.	.
USPL1	10208	broad.mit.edu	36	13	30114867	30114867	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005800	exon6	c.C1085T	p.S362L	.	.	.
C13orf33	84935	broad.mit.edu	36	13	30393952	30393952	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032849	exon4	c.C756A	p.F252L	.	.	.
RXFP2	122042	broad.mit.edu	36	13	31263998	31263998	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166058	exon14	c.C1129T	p.P377S	.	.	.
FRY	10129	broad.mit.edu	36	13	31589505	31589505	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023037	exon4	c.G359A	p.C120Y	.	.	.
FRY	10129	broad.mit.edu	36	13	31603932	31603932	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023037	exon8	c.G840T	p.K280N	.	.	.
FRY	10129	broad.mit.edu	36	13	31619488	31619488	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023037	exon12	c.C1249T	p.R417X	.	.	.
FRY	10129	broad.mit.edu	36	13	31643149	31643149	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023037	exon18	c.G1893A	p.R631R	.	.	.
FRY	10129	broad.mit.edu	36	13	31658504	31658504	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023037	exon27	c.C3427T	p.R1143C	.	.	.
FRY	10129	broad.mit.edu	36	13	31709625	31709625	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023037	exon44	c.G5920A	p.E1974K	.	.	.
FRY	10129	broad.mit.edu	36	13	31711960	31711960	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023037	exon46	c.G6629A	p.R2210Q	.	.	.
BRCA2	675	broad.mit.edu	36	13	31791291	31791291	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000059	exon3	c.G145T	p.E49X	.	.	.
BRCA2	675	broad.mit.edu	36	13	31804983	31804983	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000059	exon10	c.G1368T	p.E456D	.	.	.
BRCA2	675	broad.mit.edu	36	13	31812129	31812129	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000059	exon11	c.G5637T	p.E1879D	.	.	.
BRCA2	675	broad.mit.edu	36	13	31812542	31812542	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000059	exon11	c.A6050C	p.K2017T	.	.	.
BRCA2	675	broad.mit.edu	36	13	31813144	31813144	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000059	exon11	c.G6652T	p.D2218Y	.	.	.
BRCA2	675	broad.mit.edu	36	13	31813220	31813220	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000059	exon11	c.C6728A	p.S2243Y	.	.	.
BRCA2	675	broad.mit.edu	36	13	31851980	31851980	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000059	exon23	c.C9047A	p.S3016Y	.	.	.
N4BP2L2	10443	broad.mit.edu	36	13	31915983	31915983	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033111	exon7	c.G691T	p.D231Y	.	.	.
N4BP2L2	10443	broad.mit.edu	36	13	31990079	31990079	+	Missense_Mutation	SNP	G	T	T	rs11556385	by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014887	exon6	c.C1612A	p.Q538K	.	.	.
PDS5B	23047	broad.mit.edu	36	13	32214753	32214753	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015032	exon23	c.C2500T	p.R834X	.	.	.
PDS5B	23047	broad.mit.edu	36	13	32242644	32242644	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015032	exon32	c.C4010T	p.T1337M	.	.	.
KL	9365	broad.mit.edu	36	13	32533145	32533145	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004795	exon4	c.G1929A	p.P643P	.	.	.
KL	9365	broad.mit.edu	36	13	32533558	32533558	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004795	exon4	c.G2342T	p.R781I	.	.	.
KL	9365	broad.mit.edu	36	13	32536124	32536124	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004795	exon5	c.T2840G	p.I947S	.	.	.
KL	9365	broad.mit.edu	36	13	32536278	32536278	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004795	exon5	c.C2994A	p.S998S	.	.	.
NBEA	26960	broad.mit.edu	36	13	34632058	34632058	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015678	exon22	c.A3750C	p.K1250N	.	.	.
NBEA	26960	broad.mit.edu	36	13	34656155	34656155	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015678	exon30	c.G4874T	p.G1625V	.	.	.
NBEA	26960	broad.mit.edu	36	13	34668201	34668201	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015678	exon31	c.G5128A	p.E1710K	.	.	.
NBEA	26960	broad.mit.edu	36	13	34904473	34904473	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015678	exon39	c.C6247T	p.R2083C	.	.	.
MAB21L1	4081	broad.mit.edu	36	13	34948171	34948171	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005584	exon1	c.C105A	p.C35X	.	.	.
DCLK1	9201	broad.mit.edu	36	13	35265513	35265513	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195416	exon12	c.C1127A	p.S376Y	.	.	.
DCLK1	9201	broad.mit.edu	36	13	35294965	35294965	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001195416	exon7	c.G534T	p.E178D	.	.	.
SPG20	23111	broad.mit.edu	36	13	35776765	35776765	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142295	exon9	c.G1738A	p.G580R	.	.	.
CCNA1	8900	broad.mit.edu	36	13	35904787	35904787	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003914	exon1	c.A29G	p.Y10C	.	.	.
CCNA1	8900	broad.mit.edu	36	13	35905242	35905242	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001111047	exon2	c.C49T	p.R17X	.	.	.
C13orf36	400120	broad.mit.edu	36	13	36167376	36167376	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203451	exon2	c.T161G	p.F54C	.	.	.
C13orf36	400120	broad.mit.edu	36	13	36167535	36167535	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_203451	exon2	c.C320A	p.S107Y	.	.	.
SMAD9	4093	broad.mit.edu	36	13	36344795	36344795	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005905	exon3	c.G670T	p.D224Y	.	.	.
ALG5	29880	broad.mit.edu	36	13	36422129	36422129	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142364	exon9	c.C835T	p.R279X	.	.	.
FAM48A	55578	broad.mit.edu	36	13	36496207	36496207	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017569	exon19	c.C1559A	p.S520Y	.	.	.
FAM48A	55578	broad.mit.edu	36	13	36497555	36497555	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017569	exon17	c.G1234T	p.E412X	.	.	.
CSNK1A1L	122011	broad.mit.edu	36	13	36576626	36576626	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145203	exon1	c.C768T	p.F256F	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37109066	37109066	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135957	exon11	c.G2485A	p.E829K	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37109466	37109466	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016179	exon11	c.G2508T	p.V836V	.	.	.
FREM2	341640	broad.mit.edu	36	13	38163478	38163478	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207361	exon1	c.G3997T	p.D1333Y	.	.	.
FREM2	341640	broad.mit.edu	36	13	38163545	38163545	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207361	exon1	c.G4064A	p.R1355Q	.	.	.
FREM2	341640	broad.mit.edu	36	13	38348481	38348481	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207361	exon20	c.G8506T	p.E2836X	.	.	.
FREM2	341640	broad.mit.edu	36	13	38351093	38351093	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207361	exon23	c.C8985T	p.V2995V	.	.	.
FREM2	341640	broad.mit.edu	36	13	38352470	38352470	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207361	exon24	c.C9056T	p.S3019L	.	.	.
STOML3	161003	broad.mit.edu	36	13	38440553	38440553	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144033	exon7	c.G608A	p.R203Q	.	.	.
COG6	57511	broad.mit.edu	36	13	39191445	39191445	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145079	exon14	c.T1357G	p.L453V	.	.	.
SLC25A15	10166	broad.mit.edu	36	13	40279512	40279512	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014252	exon5	c.C535T	p.R179X	.	.	.
ELF1	1997	broad.mit.edu	36	13	40413075	40413075	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_172373	exon8	c.C1238A	p.S413Y	.	.	.
KBTBD6	89890	broad.mit.edu	36	13	40602633	40602633	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152903	exon1	c.C2015T	p.A672V	.	.	.
KBTBD6	89890	broad.mit.edu	36	13	40603091	40603091	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152903	exon1	c.C1557T	p.C519C	.	.	.
KBTBD7	84078	broad.mit.edu	36	13	40664758	40664758	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032138	exon1	c.C1636T	p.R546W	.	.	.
KBTBD7	84078	broad.mit.edu	36	13	40665132	40665132	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032138	exon1	c.G1262A	p.R421H	.	.	.
MTRF1	9617	broad.mit.edu	36	13	40724864	40724864	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004294	exon5	c.G614A	p.R205Q	.	.	.
NAA16	79612	broad.mit.edu	36	13	40797936	40797936	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024561	exon6	c.G640T	p.E214X	.	.	.
NAA16	79612	broad.mit.edu	36	13	40831037	40831037	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024561	exon12	c.A1349C	p.K450T	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41173564	41173564	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015058	exon28	c.G3328T	p.E1110X	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41191873	41191873	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015058	exon26	c.T2970C	p.F990F	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41233334	41233334	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015058	exon21	c.G2356T	p.G786X	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41359370	41359370	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015058	exon6	c.G779A	p.R260Q	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41422079	41422079	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015058	exon2	c.G234A	p.Q78Q	.	.	.
DGKH	160851	broad.mit.edu	36	13	41638747	41638747	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178009	exon9	c.G1055A	p.R352H	.	.	.
DGKH	160851	broad.mit.edu	36	13	41671954	41671954	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178009	exon20	c.G2402A	p.R801Q	.	.	.
AKAP11	11215	broad.mit.edu	36	13	41772681	41772681	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016248	exon8	c.G1799T	p.R600I	.	.	.
AKAP11	11215	broad.mit.edu	36	13	41773403	41773403	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016248	exon8	c.G2521A	p.E841K	.	.	.
ENOX1	55068	broad.mit.edu	36	13	42708869	42708869	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127615	exon15	c.C1617A	p.I539I	.	.	.
CCDC122	160857	broad.mit.edu	36	13	43332060	43332060	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144974	exon5	c.T303C	p.H101H	.	.	.
TSC22D1	8848	broad.mit.edu	36	13	44047345	44047345	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_183422	exon1	c.T866C	p.V289A	.	.	.
KIAA1704	55425	broad.mit.edu	36	13	44500086	44500086	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018559	exon8	c.C971A	p.S324Y	.	.	.
KCTD4	386618	broad.mit.edu	36	13	44666399	44666399	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198404	exon2	c.G304A	p.E102K	.	.	.
GTF2F2	2963	broad.mit.edu	36	13	44679630	44679630	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004128	exon5	c.C376T	p.R126X	.	.	.
SLC25A30	253512	broad.mit.edu	36	13	44869415	44869415	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010875	exon9	c.G812T	p.R271I	.	.	.
COG3	83548	broad.mit.edu	36	13	44948390	44948390	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031431	exon2	c.G228T	p.L76L	.	.	.
SPERT	220082	broad.mit.edu	36	13	45185330	45185330	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152719	exon3	c.G169A	p.E57K	.	.	.
SIAH3	283514	broad.mit.edu	36	13	45323655	45323655	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198849	exon1	c.C111T	p.V37V	.	.	.
ZC3H13	23091	broad.mit.edu	36	13	45440125	45440125	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015070	exon15	c.C3836A	p.S1279Y	.	.	.
ZC3H13	23091	broad.mit.edu	36	13	45440899	45440899	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015070	exon14	c.C3781T	p.R1261X	.	.	.
ZC3H13	23091	broad.mit.edu	36	13	45441094	45441094	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015070	exon14	c.C3586T	p.R1196W	.	.	.
ZC3H13	23091	broad.mit.edu	36	13	45460971	45460971	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015070	exon9	c.C1207A	p.H403N	.	.	.
CPB2	1361	broad.mit.edu	36	13	45530343	45530343	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016413	exon8	c.G860A	p.R287Q	.	.	.
C13orf18	80183	broad.mit.edu	36	13	45815592	45815592	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_025113	exon15	c.G1918A	p.E640K	.	.	.
LRCH1	23143	broad.mit.edu	36	13	46141168	46141168	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164211	exon3	c.G455A	p.R152Q	.	.	.
HTR2A	3356	broad.mit.edu	36	13	46367875	46367875	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000621	exon2	c.C168A	p.S56S	.	.	.
HTR2A	3356	broad.mit.edu	36	13	46368014	46368014	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000621	exon2	c.C29A	p.S10Y	.	.	.
SUCLA2	8803	broad.mit.edu	36	13	47426638	47426638	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003850	exon7	c.G858T	p.K286N	.	.	.
NUDT15	55270	broad.mit.edu	36	13	47513146	47513146	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018283	exon2	c.C248A	p.S83Y	.	.	.
ITM2B	9445	broad.mit.edu	36	13	47728430	47728430	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021999	exon3	c.C363A	p.I121I	.	.	.
ITM2B	9445	broad.mit.edu	36	13	47733314	47733314	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021999	exon6	c.C754T	p.R252W	.	.	.
RB1	5925	broad.mit.edu	36	13	47835071	47835071	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000321	exon8	c.G838T	p.E280X	.	.	.
RB1	5925	broad.mit.edu	36	13	47851749	47851749	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000321	exon14	c.C1351T	p.R451C	.	.	.
LPAR6	10161	broad.mit.edu	36	13	47883560	47883560	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005767	exon7	c.A1001C	p.K334T	.	.	.
LPAR6	10161	broad.mit.edu	36	13	47883677	47883677	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005767	exon7	c.C884T	p.S295L	.	.	.
LPAR6	10161	broad.mit.edu	36	13	47884519	47884519	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005767	exon7	c.C42A	p.S14S	.	.	.
FNDC3A	22862	broad.mit.edu	36	13	48640801	48640801	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001079673	exon10	c.C1089A	p.I363I	.	.	.
FNDC3A	22862	broad.mit.edu	36	13	48670672	48670672	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001079673	exon23	c.C2948A	p.S983Y	.	.	.
CDADC1	81602	broad.mit.edu	36	13	48739639	48739639	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030911	exon5	c.G443A	p.R148Q	.	.	.
CAB39L	81617	broad.mit.edu	36	13	48855002	48855002	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030925	exon2	c.G46T	p.E16X	.	.	.
SETDB2	83852	broad.mit.edu	36	13	48948779	48948779	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160308	exon5	c.A472C	p.K158Q	.	.	.
TRIM13	10206	broad.mit.edu	36	13	49484952	49484952	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005798	exon3	c.T875C	p.V292A	.	.	.
TRIM13	10206	broad.mit.edu	36	13	49485238	49485238	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005798	exon3	c.G1161T	p.K387N	.	.	.
FAM124A	220108	broad.mit.edu	36	13	50723728	50723728	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145019	exon4	c.A332G	p.D111G	.	.	.
INTS6	26512	broad.mit.edu	36	13	50848188	50848188	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012141	exon13	c.G1726A	p.E576K	.	.	.
INTS6	26512	broad.mit.edu	36	13	50859532	50859532	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012141	exon7	c.G885A	p.S295S	.	.	.
CCDC70	83446	broad.mit.edu	36	13	51337853	51337853	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031290	exon2	c.C338A	p.S113Y	.	.	.
ATP7B	540	broad.mit.edu	36	13	51447228	51447228	+	Silent	SNP	G	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000053	exon2	c.C129G	p.G43G	.	.	.
UTP14C	9724	broad.mit.edu	36	13	51501502	51501502	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021645	exon2	c.T561G	p.I187M	.	.	.
UTP14C	9724	broad.mit.edu	36	13	51501943	51501943	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021645	exon2	c.G1002T	p.Q334H	.	.	.
UTP14C	9724	broad.mit.edu	36	13	51502656	51502656	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021645	exon2	c.C1715A	p.S572Y	.	.	.
UTP14C	9724	broad.mit.edu	36	13	51502762	51502762	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021645	exon2	c.C1821T	p.F607F	.	.	.
NEK5	341676	broad.mit.edu	36	13	51580525	51580525	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199289	exon8	c.C484T	p.R162X	.	.	.
NEK3	4752	broad.mit.edu	36	13	51623365	51623365	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146099	exon7	c.G465A	p.P155P	.	.	.
PCDH8	5100	broad.mit.edu	36	13	52316723	52316723	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032949	exon3	c.G2895A	p.P965P	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57105198	57105198	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001040429	exon1	c.C517T	p.R173C	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57197276	57197276	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040429	exon4	c.G3327T	p.R1109R	.	.	.
TDRD3	81550	broad.mit.edu	36	13	59958051	59958051	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146071	exon7	c.G406A	p.A136T	.	.	.
TDRD3	81550	broad.mit.edu	36	13	60039678	60039678	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146071	exon13	c.G1858A	p.D620N	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66698974	66698974	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020403	exon2	c.G1600A	p.E534K	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66699369	66699369	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020403	exon2	c.T1205G	p.F402C	.	.	.
C13orf34	79866	broad.mit.edu	36	13	72203524	72203524	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024808	exon3	c.T258C	p.S86S	.	.	.
DIS3	22894	broad.mit.edu	36	13	72245917	72245917	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128226	exon8	c.G1055A	p.R352Q	.	.	.
TBC1D4	9882	broad.mit.edu	36	13	74759109	74759109	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014832	exon21	c.G3717A	p.T1239T	.	.	.
TBC1D4	9882	broad.mit.edu	36	13	74796522	74796522	+	Nonsense_Mutation	SNP	G	A	A	rs61736969	by-1000genomes	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014832	exon11	c.C2050T	p.R684X	.	.	.
TBC1D4	9882	broad.mit.edu	36	13	74831936	74831936	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014832	exon3	c.G1140T	p.K380N	.	.	.
UCHL3	7347	broad.mit.edu	36	13	75039440	75039440	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006002	exon5	c.G417T	p.E139D	.	.	.
LMO7	4008	broad.mit.edu	36	13	75272930	75272930	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005358	exon8	c.G728T	p.R243I	.	.	.
LMO7	4008	broad.mit.edu	36	13	75277724	75277724	+	Intron	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015842	exon6	c.A324G	p.I108M	.	.	.
KCTD12	115207	broad.mit.edu	36	13	76357447	76357447	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138444	exon1	c.G838A	p.A280T	.	.	.
FBXL3	26224	broad.mit.edu	36	13	76479688	76479688	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012158	exon5	c.T880G	p.F294V	.	.	.
FBXL3	26224	broad.mit.edu	36	13	76487660	76487660	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012158	exon4	c.G528A	p.S176S	.	.	.
MYCBP2	23077	broad.mit.edu	36	13	76555241	76555241	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015057	exon63	c.C10963T	p.R3655C	.	.	.
MYCBP2	23077	broad.mit.edu	36	13	76616582	76616582	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015057	exon49	c.C7302T	p.I2434I	.	.	.
MYCBP2	23077	broad.mit.edu	36	13	76736067	76736067	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015057	exon9	c.G1429T	p.D477Y	.	.	.
SCEL	8796	broad.mit.edu	36	13	77109283	77109283	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001160706	exon28	c.G1665T	p.E555D	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77372010	77372010	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001122659	exon6	c.C1179T	p.F393F	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77372697	77372697	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001122659	exon5	c.C1045A	p.L349I	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77373269	77373269	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001122659	exon4	c.T876G	p.F292L	.	.	.
RNF219	79596	broad.mit.edu	36	13	78088572	78088572	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024546	exon6	c.C1325A	p.S442Y	.	.	.
RNF219	79596	broad.mit.edu	36	13	78088858	78088858	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024546	exon6	c.G1039T	p.E347X	.	.	.
RNF219	79596	broad.mit.edu	36	13	78089021	78089021	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024546	exon6	c.G876T	p.K292N	.	.	.
RBM26	64062	broad.mit.edu	36	13	78830565	78830565	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022118	exon11	c.A1534C	p.N512H	.	.	.
SPRY2	10253	broad.mit.edu	36	13	79809715	79809715	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005842	exon2	c.C127T	p.L43L	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83352469	83352469	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052910	exon1	c.A1175C	p.K392T	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83353191	83353191	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052910	exon1	c.G453T	p.Q151H	.	.	.
SLITRK6	84189	broad.mit.edu	36	13	85268074	85268074	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032229	exon2	c.C571T	p.R191C	.	.	.
GPC5	2262	broad.mit.edu	36	13	91206586	91206586	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004466	exon5	c.C1191A	p.F397L	.	.	.
DCT	1638	broad.mit.edu	36	13	93890218	93890218	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001922	exon8	c.C1495T	p.R499X	.	.	.
DCT	1638	broad.mit.edu	36	13	93910437	93910437	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001922	exon6	c.C1088A	p.S363Y	.	.	.
DCT	1638	broad.mit.edu	36	13	93916821	93916821	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001922	exon3	c.G688A	p.D230N	.	.	.
TGDS	23483	broad.mit.edu	36	13	94041151	94041151	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014305	exon4	c.G270T	p.E90D	.	.	.
SOX21	11166	broad.mit.edu	36	13	94162053	94162053	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007084	exon1	c.G252A	p.K84K	.	.	.
CLDN10	9071	broad.mit.edu	36	13	95010692	95010692	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006984	exon3	c.C438A	p.F146L	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95037900	95037900	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014934	exon19	c.G2055A	p.P685P	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95059762	95059762	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198968	exon13	c.C1370A	p.P457H	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95062408	95062408	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014934	exon11	c.C1198T	p.R400X	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95080325	95080325	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014934	exon7	c.C729T	p.I243I	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95304695	95304695	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020121	exon35	c.C4044T	p.F1348F	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95328018	95328018	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020121	exon28	c.C3322A	p.L1108M	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95440327	95440327	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020121	exon8	c.G832T	p.E278X	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95463597	95463597	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020121	exon5	c.G625T	p.E209X	.	.	.
MBNL2	10150	broad.mit.edu	36	13	96797259	96797259	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207304	exon5	c.G741A	p.A247A	.	.	.
IPO5	3843	broad.mit.edu	36	13	97467039	97467039	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002271	exon25	c.T2603G	p.F868C	.	.	.
RNF113B	140432	broad.mit.edu	36	13	97626771	97626771	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178861	exon1	c.G721A	p.E241K	.	.	.
FARP1	10160	broad.mit.edu	36	13	97897067	97897067	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005766	exon26	c.C3051T	p.F1017F	.	.	.
SLC15A1	6564	broad.mit.edu	36	13	98136533	98136533	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005073	exon22	c.C1847T	p.S616L	.	.	.
SLC15A1	6564	broad.mit.edu	36	13	98138755	98138755	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005073	exon19	c.C1544T	p.A515V	.	.	.
SLC15A1	6564	broad.mit.edu	36	13	98176639	98176639	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005073	exon3	c.C87A	p.S29S	.	.	.
DOCK9	23348	broad.mit.edu	36	13	98313754	98313754	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130050	exon31	c.C3336A	p.F1112L	.	.	.
DOCK9	23348	broad.mit.edu	36	13	98333322	98333322	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130050	exon23	c.G2534A	p.G845E	.	.	.
GPR18	2841	broad.mit.edu	36	13	98705896	98705896	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005292	exon3	c.C232T	p.R78X	.	.	.
TM9SF2	9375	broad.mit.edu	36	13	99009650	99009650	+	Silent	SNP	G	A	A	rs7330734	by-cluster,by-frequency,by-2hit-2allele,by-hapmap,by-1000genomes	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004800	exon16	c.G1785A	p.T595T	.	.	.
PCCA	5095	broad.mit.edu	36	13	99607578	99607578	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001178004	exon6	c.G451T	p.E151X	.	.	.
PCCA	5095	broad.mit.edu	36	13	99760161	99760161	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001178004	exon16	c.G1427A	p.R476Q	.	.	.
PCCA	5095	broad.mit.edu	36	13	99977950	99977950	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001178004	exon22	c.T1920G	p.I640M	.	.	.
PCGF5	84333	broad.mit.edu	36	10	93011117	93011117	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032373	exon7	c.529delA	p.K177fs	.	.	.
PYROXD2	84795	broad.mit.edu	36	10	100134773	100134773	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032709	exon15	c.C1596T	p.F532F	.	.	.
HPSE2	60495	broad.mit.edu	36	10	100894137	100894137	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166246	exon3	c.G458A	p.R153Q	.	.	.
HPSE2	60495	broad.mit.edu	36	10	100985376	100985376	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166246	exon1	c.G174T	p.K58N	.	.	.
CNNM1	26507	broad.mit.edu	36	10	101110614	101110614	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020348	exon3	c.C1750T	p.R584W	.	.	.
CNNM1	26507	broad.mit.edu	36	10	101112135	101112135	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020348	exon4	c.C2020A	p.L674I	.	.	.
GOT1	2805	broad.mit.edu	36	10	101153346	101153346	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002079	exon7	c.G829T	p.E277X	.	.	.
COX15	1355	broad.mit.edu	36	10	101477289	101477289	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004376	exon3	c.G294A	p.S98S	.	.	.
COX15	1355	broad.mit.edu	36	10	101479316	101479316	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004376	exon2	c.C256A	p.L86I	.	.	.
COX15	1355	broad.mit.edu	36	10	101479465	101479465	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004376	exon2	c.G107A	p.R36H	.	.	.
ABCC2	1244	broad.mit.edu	36	10	101534517	101534517	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000392	exon2	c.C196A	p.L66I	.	.	.
DNMBP	23268	broad.mit.edu	36	10	101657783	101657783	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015221	exon6	c.C2513T	p.S838L	.	.	.
CPN1	1369	broad.mit.edu	36	10	101792216	101792216	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001308	exon9	c.G1335A	p.K445K	.	.	.
CPN1	1369	broad.mit.edu	36	10	101804126	101804126	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001308	exon7	c.C1079A	p.S360Y	.	.	.
CPN1	1369	broad.mit.edu	36	10	101825684	101825684	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001308	exon2	c.G394A	p.D132N	.	.	.
CHUK	1147	broad.mit.edu	36	10	101954313	101954313	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001278	exon13	c.T1447G	p.F483V	.	.	.
CHUK	1147	broad.mit.edu	36	10	101956977	101956977	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001278	exon11	c.G1231T	p.V411L	.	.	.
BLOC1S2	282991	broad.mit.edu	36	10	102025213	102025213	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173809	exon5	c.G425A	p.R142Q	.	.	.
PKD2L1	9033	broad.mit.edu	36	10	102045935	102045935	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016112	exon7	c.C1290T	p.F430F	.	.	.
SEC31B	25956	broad.mit.edu	36	10	102252132	102252132	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015490	exon11	c.G1279T	p.E427X	.	.	.
HIF1AN	55662	broad.mit.edu	36	10	102286261	102286261	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017902	exon2	c.G281A	p.S94N	.	.	.
PAX2	5076	broad.mit.edu	36	10	102556233	102556233	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003987	exon7	c.C742T	p.R248W	.	.	.
FAM178A	55719	broad.mit.edu	36	10	102688448	102688448	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018121	exon11	c.G2619T	p.E873D	.	.	.
C10orf2	56652	broad.mit.edu	36	10	102738283	102738283	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001163812	exon1	c.G326A	p.G109D	.	.	.
LBX1	10660	broad.mit.edu	36	10	102977337	102977337	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006562	exon2	c.C526T	p.R176W	.	.	.
BTRC	8945	broad.mit.edu	36	10	103275762	103275762	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003939	exon5	c.C451T	p.R151W	.	.	.
BTRC	8945	broad.mit.edu	36	10	103300467	103300467	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003939	exon13	c.C1570T	p.R524X	.	.	.
KCNIP2	30819	broad.mit.edu	36	10	103577107	103577107	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173192	exon9	c.T752C	p.V251A	.	.	.
HPS6	79803	broad.mit.edu	36	10	103817481	103817481	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024747	exon1	c.C2260A	p.L754I	.	.	.
LDB1	8861	broad.mit.edu	36	10	103859700	103859700	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001113407	exon7	c.G616T	p.E206X	.	.	.
GBF1	8729	broad.mit.edu	36	10	104109968	104109968	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199378	exon12	c.C1218T	p.R406R	.	.	.
GBF1	8729	broad.mit.edu	36	10	104126698	104126698	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199378	exon33	c.G4305T	p.E1435D	.	.	.
NFKB2	4791	broad.mit.edu	36	10	104146482	104146482	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001077493	exon5	c.G155A	p.R52Q	.	.	.
ARL3	403	broad.mit.edu	36	10	104426647	104426647	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004311	exon6	c.G543T	p.K181N	.	.	.
CNNM2	54805	broad.mit.edu	36	10	104669482	104669482	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199077	exon1	c.C1255T	p.R419W	.	.	.
CNNM2	54805	broad.mit.edu	36	10	104677113	104677113	+	Intron	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199077	exon2	c.A1643C	p.K548T	.	.	.
CNNM2	54805	broad.mit.edu	36	10	104799526	104799526	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199076	exon2	c.G1694A	p.G565E	.	.	.
TAF5	6877	broad.mit.edu	36	10	105137376	105137376	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006951	exon10	c.G2116T	p.E706X	.	.	.
SLK	9748	broad.mit.edu	36	10	105742796	105742796	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014720	exon4	c.G429T	p.L143F	.	.	.
SLK	9748	broad.mit.edu	36	10	105752394	105752394	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014720	exon9	c.G1468T	p.E490X	.	.	.
SLK	9748	broad.mit.edu	36	10	105752790	105752790	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014720	exon9	c.A1864C	p.N622H	.	.	.
C10orf78	119392	broad.mit.edu	36	10	105873558	105873558	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002759	exon3	c.G232T	p.E78X	.	.	.
C10orf79	80217	broad.mit.edu	36	10	105975297	105975297	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025145	exon3	c.C328T	p.L110F	.	.	.
GSTO2	119391	broad.mit.edu	36	10	106048949	106048949	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001191013	exon6	c.C547A	p.L183I	.	.	.
CCDC147	159686	broad.mit.edu	36	10	106120666	106120666	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008723	exon7	c.A954C	p.Q318H	.	.	.
CCDC147	159686	broad.mit.edu	36	10	106149127	106149127	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008723	exon12	c.G1694T	p.R565I	.	.	.
CCDC147	159686	broad.mit.edu	36	10	106204183	106204183	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008723	exon18	c.G2524A	p.A842T	.	.	.
SORCS3	22986	broad.mit.edu	36	10	106592557	106592557	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014978	exon2	c.G645A	p.T215T	.	.	.
SORCS3	22986	broad.mit.edu	36	10	106897461	106897461	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014978	exon9	c.C1399T	p.R467C	.	.	.
SORCS1	114815	broad.mit.edu	36	10	108367907	108367907	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052918	exon21	c.C2910T	p.I970I	.	.	.
SORCS1	114815	broad.mit.edu	36	10	108402292	108402292	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052918	exon18	c.G2313A	p.K771K	.	.	.
XPNPEP1	7511	broad.mit.edu	36	10	111619760	111619760	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001167604	exon18	c.G1642T	p.D548Y	.	.	.
XPNPEP1	7511	broad.mit.edu	36	10	111657483	111657483	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001167604	exon3	c.G202A	p.E68K	.	.	.
DUSP5	1847	broad.mit.edu	36	10	112256831	112256831	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004419	exon3	c.A677C	p.K226T	.	.	.
SMC3	9126	broad.mit.edu	36	10	112327585	112327585	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005445	exon6	c.C273T	p.I91I	.	.	.
SMC3	9126	broad.mit.edu	36	10	112340292	112340292	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005445	exon16	c.A1642G	p.T548A	.	.	.
PDCD4	27250	broad.mit.edu	36	10	112645819	112645819	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145341	exon12	c.G1300T	p.D434Y	.	.	.
SHOC2	8036	broad.mit.edu	36	10	112714653	112714653	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007373	exon2	c.G547T	p.E183X	.	.	.
SHOC2	8036	broad.mit.edu	36	10	112759469	112759469	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007373	exon8	c.C1431A	p.V477V	.	.	.
SHOC2	8036	broad.mit.edu	36	10	112761457	112761457	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007373	exon9	c.G1640T	p.S547I	.	.	.
GPAM	57678	broad.mit.edu	36	10	113910409	113910409	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020918	exon16	c.G1702A	p.E568K	.	.	.
TECTB	6975	broad.mit.edu	36	10	114034291	114034291	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_058222	exon2	c.C85A	p.L29I	.	.	.
ZDHHC6	64429	broad.mit.edu	36	10	114182009	114182009	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022494	exon10	c.C1117A	p.L373I	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114902111	114902111	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001146284	exon10	c.G1110A	p.A370A	.	.	.
NRAP	4892	broad.mit.edu	36	10	115354603	115354603	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198060	exon35	c.G3982A	p.D1328N	.	.	.
NRAP	4892	broad.mit.edu	36	10	115383882	115383882	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198060	exon15	c.C1506A	p.I502I	.	.	.
NRAP	4892	broad.mit.edu	36	10	115396686	115396686	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198060	exon10	c.G979A	p.E327K	.	.	.
NRAP	4892	broad.mit.edu	36	10	115401563	115401563	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198060	exon7	c.C664A	p.L222I	.	.	.
NRAP	4892	broad.mit.edu	36	10	115413137	115413137	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198060	exon2	c.A131G	p.N44S	.	.	.
DCLRE1A	9937	broad.mit.edu	36	10	115599258	115599258	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014881	exon2	c.G1596A	p.P532P	.	.	.
DCLRE1A	9937	broad.mit.edu	36	10	115599688	115599688	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014881	exon2	c.C1166A	p.S389Y	.	.	.
TDRD1	56165	broad.mit.edu	36	10	115953236	115953236	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198795	exon8	c.G901T	p.E301X	.	.	.
ABLIM1	3983	broad.mit.edu	36	10	116222806	116222806	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006720	exon6	c.G331T	p.E111X	.	.	.
ABLIM1	3983	broad.mit.edu	36	10	116294793	116294793	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002313	exon6	c.T855C	p.C285C	.	.	.
FAM160B1	57700	broad.mit.edu	36	10	116592882	116592882	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020940	exon6	c.C723T	p.N241N	.	.	.
FAM160B1	57700	broad.mit.edu	36	10	116605000	116605000	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020940	exon14	c.G1858T	p.A620S	.	.	.
ATRNL1	26033	broad.mit.edu	36	10	116920810	116920810	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207303	exon8	c.G1118T	p.R373I	.	.	.
GFRA1	2674	broad.mit.edu	36	10	117813913	117813913	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145453	exon10	c.A1369T	p.T457S	.	.	.
C10orf96	374355	broad.mit.edu	36	10	118090338	118090338	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198515	exon4	c.C268T	p.L90F	.	.	.
PNLIPRP3	119548	broad.mit.edu	36	10	118218817	118218817	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001011709	exon9	c.C1058T	p.A353V	.	.	.
PNLIPRP3	119548	broad.mit.edu	36	10	118226193	118226193	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001011709	exon11	c.C1212T	p.I404I	.	.	.
PNLIPRP2	5408	broad.mit.edu	36	10	118394554	118394554	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005396	exon13	c.G1368A	p.A456A	.	.	.
KIAA1598	57698	broad.mit.edu	36	10	118679420	118679420	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018330	exon10	c.G942T	p.E314D	.	.	.
KCNK18	338567	broad.mit.edu	36	10	118959138	118959138	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181840	exon3	c.C493T	p.R165W	.	.	.
KCNK18	338567	broad.mit.edu	36	10	118959394	118959394	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181840	exon3	c.G749A	p.S250N	.	.	.
KCNK18	338567	broad.mit.edu	36	10	118959587	118959587	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181840	exon3	c.C942A	p.F314L	.	.	.
SLC18A2	6571	broad.mit.edu	36	10	118993740	118993740	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003054	exon3	c.A390G	p.Q130Q	.	.	.
SLC18A2	6571	broad.mit.edu	36	10	119019908	119019908	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003054	exon15	c.C1384A	p.L462I	.	.	.
PDZD8	118987	broad.mit.edu	36	10	119034216	119034216	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173791	exon5	c.C2018T	p.S673L	.	.	.
PDZD8	118987	broad.mit.edu	36	10	119039705	119039705	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173791	exon4	c.C1243T	p.R415X	.	.	.
EMX2	2018	broad.mit.edu	36	10	119295152	119295152	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004098	exon2	c.G426T	p.E142D	.	.	.
EMX2	2018	broad.mit.edu	36	10	119295273	119295273	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004098	exon2	c.G547A	p.E183K	.	.	.
C10orf84	63877	broad.mit.edu	36	10	120060398	120060398	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134672	exon8	c.G663T	p.K221N	.	.	.
UPF2	26019	broad.mit.edu	36	10	12011892	12011892	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080599	exon21	c.C3787A	p.L1263I	.	.	.
UPF2	26019	broad.mit.edu	36	10	12038338	12038338	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080599	exon13	c.G2561A	p.R854Q	.	.	.
EIF3A	8661	broad.mit.edu	36	10	120786656	120786656	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003750	exon21	c.G3884A	p.R1295Q	.	.	.
EIF3A	8661	broad.mit.edu	36	10	120791933	120791933	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003750	exon19	c.G3089A	p.R1030Q	.	.	.
EIF3A	8661	broad.mit.edu	36	10	120800087	120800087	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003750	exon16	c.G2409A	p.R803R	.	.	.
UPF2	26019	broad.mit.edu	36	10	12083693	12083693	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080599	exon6	c.C1642A	p.L548I	.	.	.
FAM45A	404636	broad.mit.edu	36	10	120885994	120885994	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207009	exon9	c.G919A	p.E307K	.	.	.
GRK5	2869	broad.mit.edu	36	10	121130345	121130345	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005308	exon3	c.G177A	p.K59K	.	.	.
UPF2	26019	broad.mit.edu	36	10	12117386	12117386	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080599	exon2	c.G43T	p.D15Y	.	.	.
GRK5	2869	broad.mit.edu	36	10	121193186	121193186	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005308	exon12	c.C1198T	p.R400W	.	.	.
INPP5F	22876	broad.mit.edu	36	10	121541669	121541669	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014937	exon6	c.G623A	p.R208Q	.	.	.
INPP5F	22876	broad.mit.edu	36	10	121559687	121559687	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014937	exon14	c.G1655A	p.R552Q	.	.	.
SEC23IP	11196	broad.mit.edu	36	10	121679922	121679922	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007190	exon15	c.G2561T	p.R854I	.	.	.
DHTKD1	55526	broad.mit.edu	36	10	12176147	12176147	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018706	exon7	c.G1229A	p.R410Q	.	.	.
DHTKD1	55526	broad.mit.edu	36	10	12190001	12190001	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018706	exon12	c.G2135A	p.R712Q	.	.	.
WDR11	55717	broad.mit.edu	36	10	122638606	122638606	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018117	exon17	c.C2148T	p.I716I	.	.	.
WDR11	55717	broad.mit.edu	36	10	122658201	122658201	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018117	exon29	c.C3661T	p.P1221S	.	.	.
FGFR2	2263	broad.mit.edu	36	10	123229498	123229498	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144916	exon15	c.G1984A	p.E662K	.	.	.
FGFR2	2263	broad.mit.edu	36	10	123236925	123236925	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144916	exon12	c.C1645T	p.R549W	.	.	.
FGFR2	2263	broad.mit.edu	36	10	123248020	123248020	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144916	exon9	c.C1306A	p.L436I	.	.	.
FGFR2	2263	broad.mit.edu	36	10	123288215	123288215	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001144916	exon3	c.G284A	p.R95Q	.	.	.
CDC123	8872	broad.mit.edu	36	10	12332320	12332320	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006023	exon13	c.G989T	p.R330I	.	.	.
ATE1	11101	broad.mit.edu	36	10	123586321	123586321	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001976	exon10	c.G1159A	p.E387K	.	.	.
TACC2	10579	broad.mit.edu	36	10	123834596	123834596	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_206862	exon4	c.G2591A	p.G864D	.	.	.
TACC2	10579	broad.mit.edu	36	10	123882127	123882127	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_206861	exon4	c.G160T	p.D54Y	.	.	.
BTBD16	118663	broad.mit.edu	36	10	124039502	124039502	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144587	exon6	c.C474T	p.V158V	.	.	.
BTBD16	118663	broad.mit.edu	36	10	124056766	124056766	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144587	exon10	c.G864T	p.K288N	.	.	.
BTBD16	118663	broad.mit.edu	36	10	124084408	124084408	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144587	exon14	c.C1187T	p.T396M	.	.	.
PLEKHA1	59338	broad.mit.edu	36	10	124142823	124142823	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001974	exon2	c.C117T	p.F39F	.	.	.
DMBT1	1755	broad.mit.edu	36	10	124374793	124374793	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007329	exon42	c.A5232C	p.I1744I	.	.	.
C10orf120	399814	broad.mit.edu	36	10	124447994	124447994	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001010912	exon3	c.C253T	p.R85C	.	.	.
CUZD1	50624	broad.mit.edu	36	10	124583351	124583351	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022034	exon8	c.C1478A	p.S493Y	.	.	.
CUZD1	50624	broad.mit.edu	36	10	124586935	124586935	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022034	exon4	c.A574G	p.I192V	.	.	.
PSTK	118672	broad.mit.edu	36	10	124732793	124732793	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153336	exon3	c.G524A	p.C175Y	.	.	.
CPXM2	119587	broad.mit.edu	36	10	125496357	125496357	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198148	exon14	c.G2184T	p.E728D	.	.	.
CPXM2	119587	broad.mit.edu	36	10	125511384	125511384	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198148	exon11	c.G1771A	p.A591T	.	.	.
OAT	4942	broad.mit.edu	36	10	126079536	126079536	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001171814	exon8	c.A608G	p.E203G	.	.	.
CAMK1D	57118	broad.mit.edu	36	10	12635261	12635261	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020397	exon2	c.G124T	p.E42X	.	.	.
FAM175B	23172	broad.mit.edu	36	10	126485399	126485399	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032182	exon2	c.T82G	p.L28V	.	.	.
MMP21	118856	broad.mit.edu	36	10	127445408	127445408	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_147191	exon7	c.C1523T	p.S508F	.	.	.
MMP21	118856	broad.mit.edu	36	10	127449039	127449039	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_147191	exon5	c.A1091G	p.Y364C	.	.	.
DHX32	55760	broad.mit.edu	36	10	127519540	127519540	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018180	exon8	c.C1559T	p.S520L	.	.	.
DHX32	55760	broad.mit.edu	36	10	127530936	127530936	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018180	exon6	c.G1267T	p.E423X	.	.	.
DHX32	55760	broad.mit.edu	36	10	127545581	127545581	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018180	exon2	c.C444T	p.F148F	.	.	.
FANK1	92565	broad.mit.edu	36	10	127667122	127667122	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145235	exon3	c.G204A	p.T68T	.	.	.
ADAM12	8038	broad.mit.edu	36	10	127750088	127750088	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021641	exon12	c.G1280A	p.C427Y	.	.	.
C10orf90	118611	broad.mit.edu	36	10	128104564	128104564	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004298	exon8	c.G2047A	p.E683K	.	.	.
C10orf90	118611	broad.mit.edu	36	10	128143262	128143262	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001004298	exon4	c.C1527T	p.F509F	.	.	.
C10orf90	118611	broad.mit.edu	36	10	128143514	128143514	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004298	exon4	c.G1275T	p.K425N	.	.	.
C10orf90	118611	broad.mit.edu	36	10	128183579	128183579	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004298	exon3	c.G180T	p.E60D	.	.	.
DOCK1	1793	broad.mit.edu	36	10	128725993	128725993	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001380	exon19	c.A1870G	p.K624E	.	.	.
DOCK1	1793	broad.mit.edu	36	10	128798575	128798575	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001380	exon25	c.G2527A	p.E843K	.	.	.
FAM196A	642938	broad.mit.edu	36	10	128863603	128863603	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001039762	exon4	c.C1047T	p.I349I	.	.	.
DOCK1	1793	broad.mit.edu	36	10	129132436	129132436	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001380	exon50	c.C5253T	p.S1751S	.	.	.
FOXI2	399823	broad.mit.edu	36	10	129427074	129427074	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207426	exon2	c.C812A	p.S271Y	.	.	.
PTPRE	5791	broad.mit.edu	36	10	129759077	129759077	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130435	exon12	c.C1135T	p.R379W	.	.	.
PTPRE	5791	broad.mit.edu	36	10	129771100	129771100	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130435	exon18	c.C1869T	p.F623F	.	.	.
MKI67	4288	broad.mit.edu	36	10	129793076	129793076	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145966	exon12	c.A5938T	p.I1980L	.	.	.
MKI67	4288	broad.mit.edu	36	10	129793367	129793367	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145966	exon12	c.C5647A	p.L1883I	.	.	.
MKI67	4288	broad.mit.edu	36	10	129793461	129793461	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145966	exon12	c.G5553A	p.T1851T	.	.	.
MKI67	4288	broad.mit.edu	36	10	129795967	129795967	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145966	exon12	c.C3047A	p.S1016Y	.	.	.
MKI67	4288	broad.mit.edu	36	10	129796614	129796614	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145966	exon12	c.C2400A	p.F800L	.	.	.
ADARB2	105	broad.mit.edu	36	10	1303259	1303259	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018702	exon4	c.C1083T	p.F361F	.	.	.
CCDC3	83643	broad.mit.edu	36	10	13080446	13080446	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031455	exon2	c.G447T	p.E149D	.	.	.
MGMT	4255	broad.mit.edu	36	10	131447509	131447509	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002412	exon4	c.G421T	p.E141X	.	.	.
OPTN	10133	broad.mit.edu	36	10	13200946	13200946	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021980	exon6	c.G679A	p.E227K	.	.	.
JAKMIP3	282973	broad.mit.edu	36	10	133780947	133780947	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001105521	exon2	c.C512T	p.A171V	.	.	.
DPYSL4	10570	broad.mit.edu	36	10	133856158	133856158	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006426	exon3	c.C135T	p.I45I	.	.	.
C10orf93	255352	broad.mit.edu	36	10	134598282	134598282	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173572	exon8	c.A830G	p.Y277C	.	.	.
KNDC1	85442	broad.mit.edu	36	10	134870435	134870435	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152643	exon19	c.G3567T	p.K1189N	.	.	.
VENTX	27287	broad.mit.edu	36	10	134903447	134903447	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014468	exon3	c.C424T	p.R142C	.	.	.
PAOX	196743	broad.mit.edu	36	10	135047506	135047506	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152911	exon4	c.G921A	p.E307E	.	.	.
CYP2E1	1571	broad.mit.edu	36	10	135200571	135200571	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000773	exon7	c.G982T	p.E328X	.	.	.
SYCE1	93426	broad.mit.edu	36	10	135223624	135223624	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001143764	exon2	c.A97G	p.I33V	.	.	.
PRPF18	8559	broad.mit.edu	36	10	13682291	13682291	+	Silent	SNP	G	A	A	rs11540073	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003675	exon3	c.G186A	p.S62S	.	.	.
FRMD4A	55691	broad.mit.edu	36	10	13742497	13742497	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018027	exon20	c.C1723T	p.R575W	.	.	.
FRMD4A	55691	broad.mit.edu	36	10	13822238	13822238	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018027	exon11	c.T634A	p.S212T	.	.	.
FAM107B	83641	broad.mit.edu	36	10	14603232	14603232	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031453	exon5	c.G884T	p.R295I	.	.	.
HSPA14	51182	broad.mit.edu	36	10	14934402	14934402	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016299	exon8	c.A600G	p.G200G	.	.	.
ITGA8	8516	broad.mit.edu	36	10	15686228	15686228	+	Silent	SNP	G	A	A	rs45604340	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003638	exon20	c.C2103T	p.I701I	.	.	.
ITGA8	8516	broad.mit.edu	36	10	15689782	15689782	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003638	exon17	c.G1664A	p.R555Q	.	.	.
FAM188A	80013	broad.mit.edu	36	10	15878110	15878110	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024948	exon11	c.C950T	p.P317L	.	.	.
PTER	9317	broad.mit.edu	36	10	16566743	16566744	+	Missense_Mutation	DNP	CG	TA	TA	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001484	exon3	c.354_355TA	.	.	.	.
CUBN	8029	broad.mit.edu	36	10	16951745	16951745	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001081	exon59	c.G9350A	p.R3117H	.	.	.
CUBN	8029	broad.mit.edu	36	10	16986045	16986045	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001081	exon51	c.C7988A	p.S2663Y	.	.	.
CUBN	8029	broad.mit.edu	36	10	17030524	17030524	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001081	exon35	c.G5168A	p.S1723N	.	.	.
CUBN	8029	broad.mit.edu	36	10	17192971	17192971	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001081	exon9	c.A968G	p.E323G	.	.	.
TRDMT1	1787	broad.mit.edu	36	10	17250886	17250886	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004412	exon3	c.G211A	p.D71N	.	.	.
ST8SIA6	338596	broad.mit.edu	36	10	17402957	17402957	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004470	exon8	c.G1123T	p.E375X	.	.	.
STAM	8027	broad.mit.edu	36	10	17782206	17782206	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003473	exon9	c.G834T	p.E278D	.	.	.
NSUN6	221078	broad.mit.edu	36	10	18980110	18980110	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182543	exon1	c.G29A	p.R10K	.	.	.
PLXDC2	84898	broad.mit.edu	36	10	20472306	20472306	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032812	exon5	c.C618T	p.F206F	.	.	.
NEBL	10529	broad.mit.edu	36	10	21138795	21138795	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006393	exon25	c.G2557A	p.D853N	.	.	.
NEBL	10529	broad.mit.edu	36	10	21179432	21179432	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006393	exon11	c.A1014C	p.K338N	.	.	.
NEBL	10529	broad.mit.edu	36	10	21217034	21217034	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006393	exon4	c.G367T	p.E123X	.	.	.
C10orf140	387640	broad.mit.edu	36	10	21844495	21844495	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207371	exon4	c.C2263A	p.Q755K	.	.	.
MLLT10	8028	broad.mit.edu	36	10	21885669	21885669	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001195630	exon4	c.G332A	p.R111Q	.	.	.
SPAG6	9576	broad.mit.edu	36	10	22716877	22716877	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012443	exon6	c.C798A	p.Y266X	.	.	.
ARMC3	219681	broad.mit.edu	36	10	23290831	23290831	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173081	exon7	c.C550T	p.R184X	.	.	.
ARMC3	219681	broad.mit.edu	36	10	23332200	23332200	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173081	exon13	c.G1582T	p.E528X	.	.	.
MSRB2	22921	broad.mit.edu	36	10	23433128	23433128	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012228	exon2	c.G168T	p.K56N	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24802479	24802479	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019590	exon6	c.G1163T	p.R388I	.	.	.
ARHGAP21	57584	broad.mit.edu	36	10	24926899	24926899	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020824	exon15	c.G3178T	p.E1060X	.	.	.
ARHGAP21	57584	broad.mit.edu	36	10	24929586	24929586	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020824	exon14	c.G3127A	p.E1043K	.	.	.
ARHGAP21	57584	broad.mit.edu	36	10	24948910	24948910	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020824	exon9	c.G1920T	p.Q640H	.	.	.
ARHGAP21	57584	broad.mit.edu	36	10	24949355	24949355	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020824	exon9	c.G1475T	p.R492I	.	.	.
PRTFDC1	56952	broad.mit.edu	36	10	25266165	25266165	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020200	exon3	c.G293A	p.R98Q	.	.	.
ENKUR	219670	broad.mit.edu	36	10	25319472	25319472	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145010	exon4	c.C520A	p.R174S	.	.	.
THNSL1	79896	broad.mit.edu	36	10	25353620	25353620	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024838	exon3	c.C1462A	p.L488I	.	.	.
GPR158	57512	broad.mit.edu	36	10	25901765	25901765	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020752	exon7	c.G1696A	p.D566N	.	.	.
GPR158	57512	broad.mit.edu	36	10	25925623	25925623	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020752	exon10	c.G2044T	p.A682S	.	.	.
GPR158	57512	broad.mit.edu	36	10	25926750	25926750	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020752	exon11	c.G2189T	p.R730I	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26355394	26355394	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017433	exon10	c.G880T	p.D294Y	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26397742	26397742	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017433	exon12	c.G1093T	p.D365Y	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26417277	26417277	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017433	exon15	c.C1499T	p.A500V	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26454419	26454419	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017433	exon19	c.C1990T	p.R664X	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26486401	26486401	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017433	exon26	c.C2950T	p.R984X	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26497742	26497742	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017433	exon28	c.C3207A	p.F1069L	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26505720	26505720	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017433	exon31	c.C4378A	p.L1460M	.	.	.
GAD2	2572	broad.mit.edu	36	10	26609990	26609990	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134366	exon12	c.T1204C	p.L402L	.	.	.
APBB1IP	54518	broad.mit.edu	36	10	26829776	26829776	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019043	exon5	c.C183T	p.D61D	.	.	.
PDSS1	23590	broad.mit.edu	36	10	27049251	27049251	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014317	exon6	c.G566A	p.R189Q	.	.	.
ABI1	10006	broad.mit.edu	36	10	27088117	27088117	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001012751	exon8	c.C877T	p.R293X	.	.	.
ANKRD26	22852	broad.mit.edu	36	10	27366136	27366136	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014915	exon23	c.G2682T	p.K894N	.	.	.
ANKRD26	22852	broad.mit.edu	36	10	27366962	27366962	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014915	exon22	c.G2403T	p.K801N	.	.	.
ANKRD26	22852	broad.mit.edu	36	10	27368961	27368961	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014915	exon21	c.G2314T	p.E772X	.	.	.
YME1L1	10730	broad.mit.edu	36	10	27446555	27446555	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014263	exon15	c.A1675G	p.I559V	.	.	.
MASTL	84930	broad.mit.edu	36	10	27499073	27499073	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172303	exon8	c.C1179A	p.F393L	.	.	.
MASTL	84930	broad.mit.edu	36	10	27499713	27499713	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001172303	exon8	c.C1819T	p.P607S	.	.	.
ZMYND11	10771	broad.mit.edu	36	10	276020	276020	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_212479	exon8	c.C719T	p.A240V	.	.	.
ARMC4	55130	broad.mit.edu	36	10	28191428	28191428	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018076	exon18	c.A2740C	p.N914H	.	.	.
MPP7	143098	broad.mit.edu	36	10	28388660	28388660	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173496	exon16	c.G1223T	p.R408I	.	.	.
BAMBI	25805	broad.mit.edu	36	10	29010250	29010250	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012342	exon2	c.A134C	p.K45T	.	.	.
BAMBI	25805	broad.mit.edu	36	10	29011082	29011082	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012342	exon3	c.C529T	p.R177X	.	.	.
LYZL1	84569	broad.mit.edu	36	10	29621554	29621554	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032517	exon3	c.C378T	p.F126F	.	.	.
SVIL	6840	broad.mit.edu	36	10	29787383	29787383	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003174	exon35	c.G5266A	p.D1756N	.	.	.
SVIL	6840	broad.mit.edu	36	10	29802816	29802816	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003174	exon28	c.C4208T	p.S1403L	.	.	.
SVIL	6840	broad.mit.edu	36	10	29822178	29822178	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003174	exon19	c.C2712T	p.F904F	.	.	.
SVIL	6840	broad.mit.edu	36	10	29852601	29852601	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003174	exon13	c.G1670A	p.R557K	.	.	.
SVIL	6840	broad.mit.edu	36	10	29852766	29852766	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003174	exon13	c.C1505T	p.S502L	.	.	.
SVIL	6840	broad.mit.edu	36	10	29852957	29852957	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003174	exon13	c.G1314T	p.Q438H	.	.	.
SVIL	6840	broad.mit.edu	36	10	29880033	29880033	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003174	exon8	c.A326C	p.K109T	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30355057	30355057	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020848	exon3	c.T4026G	p.D1342E	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30356888	30356888	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020848	exon3	c.C2195T	p.T732M	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30358509	30358509	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020848	exon3	c.C574A	p.P192T	.	.	.
MTPAP	55149	broad.mit.edu	36	10	30651416	30651416	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018109	exon6	c.A1129C	p.N377H	.	.	.
ZNF438	220929	broad.mit.edu	36	10	31177544	31177544	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143771	exon7	c.C1766T	p.A589V	.	.	.
ARHGAP12	94134	broad.mit.edu	36	10	32146804	32146804	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018287	exon13	c.G1649T	p.G550V	.	.	.
ARHGAP12	94134	broad.mit.edu	36	10	32149333	32149333	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018287	exon12	c.G1620T	p.K540N	.	.	.
ARHGAP12	94134	broad.mit.edu	36	10	32172493	32172493	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018287	exon7	c.G1198T	p.E400X	.	.	.
ARHGAP12	94134	broad.mit.edu	36	10	32190558	32190558	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018287	exon4	c.C719A	p.S240Y	.	.	.
KIF5B	3799	broad.mit.edu	36	10	32347315	32347315	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004521	exon22	c.G2374T	p.E792X	.	.	.
KIF5B	3799	broad.mit.edu	36	10	32350032	32350032	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004521	exon19	c.G2128A	p.E710K	.	.	.
KIF5B	3799	broad.mit.edu	36	10	32351793	32351793	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004521	exon16	c.C1903T	p.R635C	.	.	.
KIF5B	3799	broad.mit.edu	36	10	32363690	32363690	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004521	exon11	c.G1045T	p.E349X	.	.	.
KIF5B	3799	broad.mit.edu	36	10	32364585	32364585	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004521	exon10	c.G833A	p.R278Q	.	.	.
KIF5B	3799	broad.mit.edu	36	10	32366508	32366508	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004521	exon7	c.G532A	p.E178K	.	.	.
C10orf68	79741	broad.mit.edu	36	10	33205305	33205305	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024688	exon22	c.C1865A	p.S622Y	.	.	.
NRP1	8829	broad.mit.edu	36	10	33514644	33514644	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003873	exon15	c.C2349T	p.G783G	.	.	.
PARD3	56288	broad.mit.edu	36	10	34660165	34660165	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184787	exon19	c.C2728T	p.R910C	.	.	.
PARD3	56288	broad.mit.edu	36	10	34713124	34713124	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001184787	exon8	c.C955T	p.R319C	.	.	.
CUL2	8453	broad.mit.edu	36	10	35367985	35367985	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198777	exon9	c.G746A	p.R249Q	.	.	.
ANKRD30A	91074	broad.mit.edu	36	10	37459204	37459204	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052997	exon3	c.C234T	p.L78L	.	.	.
ANKRD30A	91074	broad.mit.edu	36	10	37470694	37470694	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052997	exon7	c.C695T	p.A232V	.	.	.
ANKRD30A	91074	broad.mit.edu	36	10	37471197	37471197	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052997	exon7	c.G1198T	p.E400X	.	.	.
ZNF248	57209	broad.mit.edu	36	10	38160586	38160586	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021045	exon6	c.G1703T	p.R568I	.	.	.
ZNF248	57209	broad.mit.edu	36	10	38161947	38161947	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021045	exon6	c.A342C	p.E114D	.	.	.
ZNF25	219749	broad.mit.edu	36	10	38281179	38281179	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145011	exon6	c.G1253A	p.R418K	.	.	.
ZNF25	219749	broad.mit.edu	36	10	38281890	38281890	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145011	exon6	c.A542C	p.K181T	.	.	.
ZNF37A	7587	broad.mit.edu	36	10	38447293	38447293	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007094	exon8	c.G1208T	p.R403I	.	.	.
ZNF37A	7587	broad.mit.edu	36	10	38447477	38447477	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001007094	exon8	c.G1392T	p.E464D	.	.	.
ZNF33B	7582	broad.mit.edu	36	10	42408078	42408078	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006955	exon5	c.C2326A	p.P776T	.	.	.
ZNF33B	7582	broad.mit.edu	36	10	42409174	42409174	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006955	exon5	c.G1230T	p.E410D	.	.	.
BMS1	9790	broad.mit.edu	36	10	42599906	42599906	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014753	exon2	c.A58C	p.K20Q	.	.	.
BMS1	9790	broad.mit.edu	36	10	42612152	42612152	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014753	exon10	c.G1454A	p.R485Q	.	.	.
BMS1	9790	broad.mit.edu	36	10	42638623	42638623	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014753	exon20	c.C3184T	p.R1062X	.	.	.
RET	5979	broad.mit.edu	36	10	42930166	42930166	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020975	exon11	c.C2112A	p.V704V	.	.	.
CSGALNACT2	55454	broad.mit.edu	36	10	42971257	42971257	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018590	exon2	c.C654T	p.F218F	.	.	.
RASGEF1A	221002	broad.mit.edu	36	10	43011991	43011991	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145313	exon12	c.G1360A	p.A454T	.	.	.
HNRNPF	3185	broad.mit.edu	36	10	43202993	43202993	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001098208	exon3	c.C346T	p.R116X	.	.	.
ZNF239	8187	broad.mit.edu	36	10	43372385	43372385	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099283	exon2	c.T1149G	p.G383G	.	.	.
ZNF239	8187	broad.mit.edu	36	10	43373369	43373369	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099283	exon2	c.C165T	p.F55F	.	.	.
ZNF32	7580	broad.mit.edu	36	10	43460141	43460141	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006973	exon3	c.C185T	p.S62L	.	.	.
TMEM72	643236	broad.mit.edu	36	10	44743382	44743382	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001123376	exon2	c.C78T	p.I26I	.	.	.
MARCH8	220972	broad.mit.edu	36	10	45273755	45273755	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002266	exon7	c.G814A	p.D272N	.	.	.
ANUBL1	93550	broad.mit.edu	36	10	45441873	45441873	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128324	exon7	c.G1404T	p.K468N	.	.	.
ANUBL1	93550	broad.mit.edu	36	10	45442409	45442409	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001128324	exon7	c.G868A	p.E290K	.	.	.
PPYR1	5540	broad.mit.edu	36	10	46506874	46506874	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005972	exon3	c.A85G	p.N29D	.	.	.
PPYR1	5540	broad.mit.edu	36	10	46507508	46507508	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005972	exon3	c.G719A	p.R240H	.	.	.
FAM21B	55747	broad.mit.edu	36	10	47442321	47442321	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018232	exon17	c.C1554T	p.S518S	.	.	.
RBP3	5949	broad.mit.edu	36	10	48008072	48008072	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002900	exon1	c.C2812T	p.P938S	.	.	.
GDF2	2658	broad.mit.edu	36	10	48033866	48033866	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016204	exon2	c.C1008T	p.F336F	.	.	.
FRMPD2	143162	broad.mit.edu	36	10	49063625	49063625	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001018071	exon18	c.A2336G	p.K779R	.	.	.
MAPK8	5599	broad.mit.edu	36	10	49287982	49287982	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002750	exon3	c.G307T	p.D103Y	.	.	.
MAPK8	5599	broad.mit.edu	36	10	49302634	49302634	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139046	exon6	c.C688A	p.H230N	.	.	.
MAPK8	5599	broad.mit.edu	36	10	49304516	49304516	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002750	exon8	c.A959G	p.Y320C	.	.	.
C10orf72	196740	broad.mit.edu	36	10	49985823	49985823	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144984	exon2	c.C279T	p.S93S	.	.	.
ERCC6	2074	broad.mit.edu	36	10	50336888	50336888	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000124	exon21	c.A4461G	p.K1487K	.	.	.
ERCC6	2074	broad.mit.edu	36	10	50337139	50337139	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000124	exon21	c.C4210T	p.R1404C	.	.	.
AKR1C2	1646	broad.mit.edu	36	10	5035953	5035953	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_205845	exon2	c.G75A	p.A25A	.	.	.
PGBD3	267004	broad.mit.edu	36	10	50393693	50393693	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_170753	exon2	c.G1474A	p.E492K	.	.	.
PGBD3	267004	broad.mit.edu	36	10	50394316	50394316	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_170753	exon2	c.A851C	p.Q284P	.	.	.
ERCC6	2074	broad.mit.edu	36	10	50406564	50406564	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000124	exon4	c.A557G	p.K186R	.	.	.
CHAT	1103	broad.mit.edu	36	10	50543021	50543021	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142929	exon15	c.C1816T	p.L606L	.	.	.
OGDHL	55753	broad.mit.edu	36	10	50622746	50622746	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143996	exon12	c.A1517C	p.K506T	.	.	.
OGDHL	55753	broad.mit.edu	36	10	50624900	50624900	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143996	exon9	c.G1027A	p.A343T	.	.	.
NCOA4	8031	broad.mit.edu	36	10	51255592	51255592	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001145261	exon9	c.G1733A	p.R578Q	.	.	.
AKR1C3	8644	broad.mit.edu	36	10	5126668	5126668	+	Intron	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003739	exon1	c.A32C	p.N11T	.	.	.
A1CF	29974	broad.mit.edu	36	10	52280445	52280445	+	Intron	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198820	exon4	c.A109C	p.T37P	.	.	.
PRKG1	5592	broad.mit.edu	36	10	52897601	52897601	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006258	exon3	c.G591T	p.K197N	.	.	.
CSTF2T	23283	broad.mit.edu	36	10	53128691	53128691	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015235	exon1	c.T625C	p.S209P	.	.	.
PRKG1	5592	broad.mit.edu	36	10	53563627	53563627	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006258	exon8	c.C957T	p.N319N	.	.	.
PRKG1	5592	broad.mit.edu	36	10	53702237	53702237	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006258	exon12	c.C1393A	p.L465I	.	.	.
PRKG1	5592	broad.mit.edu	36	10	53718740	53718740	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006258	exon16	c.A1876C	p.K626Q	.	.	.
TUBAL3	79861	broad.mit.edu	36	10	5426009	5426009	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024803	exon4	c.G812T	p.R271I	.	.	.
NET1	10276	broad.mit.edu	36	10	5486339	5486339	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005863	exon7	c.C718A	p.L240I	.	.	.
NET1	10276	broad.mit.edu	36	10	5488571	5488571	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005863	exon10	c.C1243T	p.R415C	.	.	.
Unknown	0	broad.mit.edu	36	10	55238828	55238828	+	IGR	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142769	exon36	c.G5003T	p.R1668I	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55252858	55252858	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142767	exon31	c.G4514T	p.R1505I	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55253195	55253195	+	Intron	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001142765	exon31	c.A4160G	p.N1387S	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55261107	55261107	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142767	exon29	c.C4065A	p.I1355I	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55270105	55270105	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142767	exon28	c.G3853T	p.D1285Y	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55368599	55368599	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142767	exon24	c.C3244A	p.L1082I	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55389542	55389542	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142767	exon22	c.C2967A	p.V989V	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55583048	55583048	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142767	exon13	c.C1491T	p.V497V	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55614901	55614901	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142767	exon11	c.C1328T	p.S443L	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55747180	55747180	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142767	exon7	c.C622T	p.R208X	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55776216	55776216	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142767	exon6	c.T509A	p.F170Y	.	.	.
ZWINT	11130	broad.mit.edu	36	10	57789494	57789494	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007057	exon4	c.G383A	p.R128Q	.	.	.
C10orf18	54906	broad.mit.edu	36	10	5812564	5812564	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017782	exon11	c.G596T	p.R199I	.	.	.
C10orf18	54906	broad.mit.edu	36	10	5812892	5812892	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017782	exon11	c.A924C	p.E308D	.	.	.
C10orf18	54906	broad.mit.edu	36	10	5829276	5829276	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017782	exon15	c.G3886T	p.E1296X	.	.	.
C10orf18	54906	broad.mit.edu	36	10	5838650	5838650	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017782	exon16	c.G6675T	p.E2225D	.	.	.
ANKRD16	54522	broad.mit.edu	36	10	5962273	5962273	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001009941	exon6	c.C922T	p.R308X	.	.	.
BICC1	80114	broad.mit.edu	36	10	60216745	60216745	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080512	exon5	c.C444T	p.I148I	.	.	.
BICC1	80114	broad.mit.edu	36	10	60219599	60219599	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080512	exon8	c.C947T	p.A316V	.	.	.
FAM13C	220965	broad.mit.edu	36	10	60682581	60682581	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143773	exon13	c.T1267G	p.L423V	.	.	.
FAM13C	220965	broad.mit.edu	36	10	60782044	60782044	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143773	exon4	c.G67A	p.E23K	.	.	.
IL2RA	3559	broad.mit.edu	36	10	6103604	6103604	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000417	exon4	c.C426T	p.F142F	.	.	.
SLC16A9	220963	broad.mit.edu	36	10	61084091	61084091	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194298	exon5	c.T699A	p.S233R	.	.	.
SLC16A9	220963	broad.mit.edu	36	10	61114044	61114044	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194298	exon2	c.A12C	p.K4N	.	.	.
ANK3	288	broad.mit.edu	36	10	61500434	61500434	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020987	exon37	c.C10211A	p.S3404Y	.	.	.
ANK3	288	broad.mit.edu	36	10	61819267	61819267	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020987	exon1	c.G36T	p.R12S	.	.	.
CDK1	983	broad.mit.edu	36	10	62223669	62223669	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001786	exon8	c.G824A	p.R275Q	.	.	.
RTKN2	219790	broad.mit.edu	36	10	63634734	63634734	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145307	exon10	c.C1074T	p.F358F	.	.	.
ZNF365	22891	broad.mit.edu	36	10	63806412	63806412	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199451	exon2	c.G454T	p.D152Y	.	.	.
ZNF365	22891	broad.mit.edu	36	10	63818209	63818209	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199451	exon3	c.G792A	p.E264E	.	.	.
ZNF365	22891	broad.mit.edu	36	10	63829464	63829464	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014951	exon5	c.G1134T	p.K378N	.	.	.
ZNF365	22891	broad.mit.edu	36	10	64084622	64084622	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_199452	exon3	c.G52A	p.E18K	.	.	.
EGR2	1959	broad.mit.edu	36	10	64243890	64243890	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000399	exon2	c.C514T	p.P172S	.	.	.
NRBF2	29982	broad.mit.edu	36	10	64563240	64563240	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_030759	exon1	c.G4A	p.E2K	.	.	.
CTNNA3	29119	broad.mit.edu	36	10	67418516	67418516	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013266	exon16	c.G2205T	p.A735A	.	.	.
LRRTM3	347731	broad.mit.edu	36	10	68357514	68357514	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178011	exon2	c.G834A	p.P278P	.	.	.
SIRT1	23411	broad.mit.edu	36	10	69317194	69317194	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012238	exon2	c.C444T	p.F148F	.	.	.
SIRT1	23411	broad.mit.edu	36	10	69336553	69336553	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142498	exon4	c.G58T	p.E20X	.	.	.
HERC4	26091	broad.mit.edu	36	10	69365917	69365917	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022079	exon23	c.C2677T	p.R893W	.	.	.
MYPN	84665	broad.mit.edu	36	10	69591497	69591497	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032578	exon8	c.C1465T	p.R489X	.	.	.
MYPN	84665	broad.mit.edu	36	10	69604136	69604136	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032578	exon11	c.G2281T	p.E761X	.	.	.
DNA2	1763	broad.mit.edu	36	10	69901663	69901663	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080449	exon1	c.C223A	p.L75I	.	.	.
SLC25A16	8034	broad.mit.edu	36	10	69913305	69913305	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152707	exon9	c.C889T	p.R297X	.	.	.
TET1	80312	broad.mit.edu	36	10	70002937	70002937	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030625	exon2	c.C836A	p.S279Y	.	.	.
TET1	80312	broad.mit.edu	36	10	70003390	70003390	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030625	exon2	c.C1289A	p.P430H	.	.	.
TET1	80312	broad.mit.edu	36	10	70076727	70076727	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030625	exon4	c.C4235A	p.S1412Y	.	.	.
CCAR1	55749	broad.mit.edu	36	10	70179025	70179025	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018237	exon9	c.G953A	p.R318Q	.	.	.
STOX1	219736	broad.mit.edu	36	10	70314372	70314372	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152709	exon3	c.C814A	p.L272I	.	.	.
DDX21	9188	broad.mit.edu	36	10	70389773	70389773	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004728	exon2	c.A293C	p.K98T	.	.	.
DDX21	9188	broad.mit.edu	36	10	70408718	70408718	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004728	exon13	c.G2017T	p.V673F	.	.	.
VPS26A	9559	broad.mit.edu	36	10	70562666	70562666	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001035260	exon2	c.C10A	p.L4I	.	.	.
VPS26A	9559	broad.mit.edu	36	10	70586905	70586905	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001035260	exon4	c.C366T	p.I122I	.	.	.
SUPV3L1	6832	broad.mit.edu	36	10	70632276	70632276	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003171	exon12	c.C1594T	p.L532F	.	.	.
HKDC1	80201	broad.mit.edu	36	10	70687161	70687161	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025130	exon14	c.C2005T	p.P669S	.	.	.
HKDC1	80201	broad.mit.edu	36	10	70691028	70691028	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025130	exon16	c.G2344A	p.E782K	.	.	.
H2AFY2	55506	broad.mit.edu	36	10	71505422	71505422	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018649	exon2	c.T2C	p.M1T	.	.	.
SAR1A	56681	broad.mit.edu	36	10	71582269	71582269	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020150	exon7	c.G566A	p.G189D	.	.	.
EIF4EBP2	1979	broad.mit.edu	36	10	71849807	71849807	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004096	exon2	c.G277T	p.V93L	.	.	.
ADAMTS14	140766	broad.mit.edu	36	10	72165051	72165051	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_080722	exon9	c.G1473T	p.Q491H	.	.	.
SGPL1	8879	broad.mit.edu	36	10	72287378	72287378	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003901	exon6	c.C411T	p.D137D	.	.	.
CDH23	64072	broad.mit.edu	36	10	72876118	72876118	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052836	exon3	c.C105A	p.F35L	.	.	.
CDH23	64072	broad.mit.edu	36	10	72996606	72996606	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052836	exon7	c.C531A	p.F177L	.	.	.
CDH23	64072	broad.mit.edu	36	10	73228964	73228964	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001171933	exon4	c.G425A	p.R142Q	.	.	.
PSAP	5660	broad.mit.edu	36	10	73257802	73257802	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001042465	exon6	c.G695A	p.R232H	.	.	.
DNAJB12	54788	broad.mit.edu	36	10	73770771	73770771	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001002762	exon4	c.C723A	p.F241L	.	.	.
CCDC109A	90550	broad.mit.edu	36	10	74301340	74301340	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138357	exon6	c.G857A	p.R286H	.	.	.
OIT3	170392	broad.mit.edu	36	10	74328802	74328802	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152635	exon2	c.C436T	p.H146Y	.	.	.
OIT3	170392	broad.mit.edu	36	10	74354110	74354110	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152635	exon7	c.G1069A	p.E357K	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7463843	7463843	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001029880	exon2	c.C24A	p.S8S	.	.	.
DNAJC9	23234	broad.mit.edu	36	10	74673272	74673272	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015190	exon5	c.G675T	p.K225N	.	.	.
TTC18	118491	broad.mit.edu	36	10	74707116	74707116	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145170	exon22	c.A2618C	p.K873T	.	.	.
TTC18	118491	broad.mit.edu	36	10	74752777	74752777	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145170	exon10	c.C1072T	p.R358W	.	.	.
ZMYND17	118490	broad.mit.edu	36	10	74854454	74854454	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001024593	exon7	c.T1246C	p.S416P	.	.	.
PPP3CB	5532	broad.mit.edu	36	10	74876295	74876295	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142353	exon11	c.G1232A	p.R411Q	.	.	.
USP54	159195	broad.mit.edu	36	10	74947241	74947241	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152586	exon18	c.G2949T	p.K983N	.	.	.
USP54	159195	broad.mit.edu	36	10	74959670	74959670	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152586	exon13	c.G1834T	p.E612X	.	.	.
SEC24C	9632	broad.mit.edu	36	10	75199205	75199205	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198597	exon18	c.G2519A	p.R840Q	.	.	.
FUT11	170384	broad.mit.edu	36	10	75203263	75203263	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173540	exon2	c.C1018A	p.L340M	.	.	.
KIAA0913	23053	broad.mit.edu	36	10	75220030	75220030	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015037	exon7	c.C915A	p.F305L	.	.	.
PLAU	5328	broad.mit.edu	36	10	75343389	75343389	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002658	exon7	c.G547T	p.E183X	.	.	.
VCL	7414	broad.mit.edu	36	10	75547878	75547878	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014000	exon22	c.G3350A	p.R1117Q	.	.	.
ADK	132	broad.mit.edu	36	10	75744461	75744461	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001123	exon4	c.C174T	p.V58V	.	.	.
MYST4	23522	broad.mit.edu	36	10	76402388	76402388	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012330	exon7	c.T1046G	p.L349X	.	.	.
MYST4	23522	broad.mit.edu	36	10	76414873	76414873	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012330	exon12	c.C2403G	p.C801W	.	.	.
ITIH5	80760	broad.mit.edu	36	10	7651714	7651714	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030569	exon12	c.G2072T	p.S691I	.	.	.
DUSP13	51207	broad.mit.edu	36	10	76524638	76524638	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016364	exon4	c.C399T	p.R133R	.	.	.
ITIH5	80760	broad.mit.edu	36	10	7697995	7697995	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030569	exon7	c.G895A	p.V299M	.	.	.
C10orf11	83938	broad.mit.edu	36	10	77476949	77476949	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032024	exon3	c.C196A	p.L66M	.	.	.
ITIH2	3698	broad.mit.edu	36	10	7802896	7802896	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002216	exon7	c.C702T	p.F234F	.	.	.
ITIH2	3698	broad.mit.edu	36	10	7813906	7813906	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002216	exon13	c.G1588A	p.A530T	.	.	.
ITIH2	3698	broad.mit.edu	36	10	7816920	7816920	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002216	exon15	c.G1817T	p.R606I	.	.	.
KCNMA1	3778	broad.mit.edu	36	10	78614631	78614631	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001161353	exon4	c.G652A	p.D218N	.	.	.
ATP5C1	509	broad.mit.edu	36	10	7878109	7878109	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001973	exon2	c.G76A	p.A26T	.	.	.
ATP5C1	509	broad.mit.edu	36	10	7881775	7881775	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001001973	exon5	c.G463T	p.E155X	.	.	.
DLG5	9231	broad.mit.edu	36	10	79241803	79241803	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004747	exon22	c.C4207T	p.R1403W	.	.	.
POLR3A	11128	broad.mit.edu	36	10	79414974	79414974	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007055	exon24	c.C3202A	p.P1068T	.	.	.
POLR3A	11128	broad.mit.edu	36	10	79415923	79415923	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007055	exon22	c.G2902A	p.E968K	.	.	.
POLR3A	11128	broad.mit.edu	36	10	79434639	79434639	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007055	exon16	c.C2088A	p.F696L	.	.	.
POLR3A	11128	broad.mit.edu	36	10	79455519	79455519	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007055	exon3	c.C185T	p.T62M	.	.	.
TAF3	83860	broad.mit.edu	36	10	8046610	8046610	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031923	exon3	c.G1131A	p.P377P	.	.	.
ZMIZ1	57178	broad.mit.edu	36	10	80720786	80720786	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020338	exon10	c.C605T	p.S202L	.	.	.
GATA3	2625	broad.mit.edu	36	10	8155908	8155908	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002051	exon6	c.G1248A	p.L416L	.	.	.
C10orf58	84293	broad.mit.edu	36	10	82181749	82181749	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032333	exon6	c.G604T	p.E202X	.	.	.
SH2D4B	387694	broad.mit.edu	36	10	82353322	82353322	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_207372	exon5	c.G651A	p.R217R	.	.	.
SH2D4B	387694	broad.mit.edu	36	10	82393734	82393734	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207372	exon7	c.A991C	p.N331H	.	.	.
NRG3	10718	broad.mit.edu	36	10	83625899	83625899	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001010848	exon1	c.C823T	p.H275Y	.	.	.
TUBB8	347688	broad.mit.edu	36	10	84559	84559	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164154	exon3	c.C57A	p.I19I	.	.	.
NRG3	10718	broad.mit.edu	36	10	84735101	84735101	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001165973	exon11	c.C1260A	p.S420R	.	.	.
LARP4B	23185	broad.mit.edu	36	10	850951	850951	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015155	exon15	c.G1755A	p.S585S	.	.	.
LARP4B	23185	broad.mit.edu	36	10	853670	853670	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015155	exon14	c.G1690T	p.E564X	.	.	.
GHITM	27069	broad.mit.edu	36	10	85893832	85893832	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014394	exon4	c.G331T	p.E111X	.	.	.
LRIT2	340745	broad.mit.edu	36	10	85974189	85974189	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001017924	exon2	c.C772T	p.P258S	.	.	.
LRIT1	26103	broad.mit.edu	36	10	85982286	85982286	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015613	exon4	c.G1249T	p.E417X	.	.	.
FAM190B	54462	broad.mit.edu	36	10	86121768	86121768	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018999	exon2	c.G980A	p.R327Q	.	.	.
LARP4B	23185	broad.mit.edu	36	10	865487	865487	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015155	exon10	c.G963T	p.K321N	.	.	.
GRID1	2894	broad.mit.edu	36	10	87369681	87369681	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017551	exon14	c.C2283T	p.I761I	.	.	.
GRID1	2894	broad.mit.edu	36	10	87472845	87472845	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017551	exon12	c.G1892A	p.R631H	.	.	.
WAPAL	23063	broad.mit.edu	36	10	88217195	88217195	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015045	exon9	c.C2191T	p.R731C	.	.	.
WAPAL	23063	broad.mit.edu	36	10	88250078	88250078	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015045	exon3	c.A902C	p.K301T	.	.	.
OPN4	94233	broad.mit.edu	36	10	88409141	88409141	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001030015	exon6	c.C769T	p.L257F	.	.	.
AGAP11	119385	broad.mit.edu	36	10	88758112	88758112	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133447	exon12	c.G123A	p.T41T	.	.	.
AGAP11	119385	broad.mit.edu	36	10	88758666	88758666	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133447	exon12	c.G677T	p.S226I	.	.	.
AGAP11	119385	broad.mit.edu	36	10	88758806	88758806	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133447	exon12	c.G817T	p.E273X	.	.	.
AGAP11	119385	broad.mit.edu	36	10	88758952	88758952	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133447	exon12	c.G963T	p.Q321H	.	.	.
FAM35A	54537	broad.mit.edu	36	10	88901866	88901866	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019054	exon3	c.G775T	p.D259Y	.	.	.
MINPP1	9562	broad.mit.edu	36	10	89301998	89301998	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001178118	exon5	c.T644G	p.I215R	.	.	.
PAPSS2	9060	broad.mit.edu	36	10	89462814	89462814	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001015880	exon3	c.C148A	p.L50I	.	.	.
PAPSS2	9060	broad.mit.edu	36	10	89491085	89491085	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001015880	exon10	c.G1200T	p.Q400H	.	.	.
ATAD1	84896	broad.mit.edu	36	10	89504484	89504484	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032810	exon10	c.G1026T	p.K342N	.	.	.
ATAD1	84896	broad.mit.edu	36	10	89540116	89540116	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032810	exon4	c.G313T	p.D105Y	.	.	.
PTEN	5728	broad.mit.edu	36	10	89682885	89682885	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000314	exon5	c.G389A	p.R130Q	PTEN,central_nervous_system,brain,Substitution - Nonsense,+1	.	.
PTEN	5728	broad.mit.edu	36	10	89701856	89701856	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000314	exon6	c.G494A	p.G165E	PTEN,central_nervous_system,brain,Substitution - Missense,0	.	.
LIPJ	142910	broad.mit.edu	36	10	90355380	90355380	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010939	exon10	c.C806A	p.S269Y	.	.	.
LIPJ	142910	broad.mit.edu	36	10	90356551	90356551	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010939	exon11	c.T1008G	p.I336M	.	.	.
LIPF	8513	broad.mit.edu	36	10	90418397	90418397	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004190	exon4	c.C326T	p.A109V	.	.	.
LIPK	643414	broad.mit.edu	36	10	90480784	90480784	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001080518	exon3	c.C288T	p.N96N	.	.	.
STAMBPL1	57559	broad.mit.edu	36	10	90666426	90666426	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020799	exon8	c.G913T	p.E305X	.	.	.
ACTA2	59	broad.mit.edu	36	10	90690976	90690976	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001141945	exon6	c.C606T	p.F202F	.	.	.
IFIT2	3433	broad.mit.edu	36	10	91051863	91051863	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001547	exon1	c.G3T	p.M1I	.	.	.
IFIT2	3433	broad.mit.edu	36	10	91056203	91056203	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001547	exon2	c.G510T	p.K170N	.	.	.
IFIT2	3433	broad.mit.edu	36	10	91056517	91056517	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001547	exon2	c.A824G	p.E275G	.	.	.
IFIT2	3433	broad.mit.edu	36	10	91056622	91056622	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001547	exon2	c.G929T	p.R310I	.	.	.
IFIT3	3437	broad.mit.edu	36	10	91089026	91089026	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001549	exon2	c.C634A	p.L212I	.	.	.
IFIT1B	439996	broad.mit.edu	36	10	91133288	91133288	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001010987	exon2	c.G238A	p.D80N	.	.	.
IFIT1	3434	broad.mit.edu	36	10	91153095	91153095	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001548	exon2	c.G1083T	p.E361D	.	.	.
IFIT5	24138	broad.mit.edu	36	10	91167018	91167018	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012420	exon2	c.G82T	p.D28Y	.	.	.
SLC16A12	387700	broad.mit.edu	36	10	91182874	91182874	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_213606	exon8	c.C1478A	p.S493Y	.	.	.
SLC16A12	387700	broad.mit.edu	36	10	91183007	91183007	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_213606	exon8	c.T1345C	p.S449P	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91458916	91458916	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016195	exon3	c.G160A	p.E54K	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91487549	91487549	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016195	exon20	c.G2851A	p.E951K	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91487954	91487954	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016195	exon20	c.G3256T	p.E1086X	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91488257	91488257	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016195	exon20	c.G3559T	p.E1187X	.	.	.
HTR7	3363	broad.mit.edu	36	10	92493423	92493423	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019859	exon3	c.G1300A	p.A434T	.	.	.
HTR7	3363	broad.mit.edu	36	10	92498812	92498812	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_019859	exon2	c.C1059A	p.I353I	.	.	.
ANKRD1	27063	broad.mit.edu	36	10	92667511	92667511	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014391	exon5	c.G510T	p.E170D	.	.	.
HECTD2	143279	broad.mit.edu	36	10	93234297	93234297	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182765	exon9	c.C875T	p.S292F	.	.	.
PPP1R3C	5507	broad.mit.edu	36	10	93380238	93380238	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005398	exon2	c.A380T	p.K127I	.	.	.
TNKS2	80351	broad.mit.edu	36	10	93578076	93578076	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025235	exon9	c.G1037A	p.R346Q	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93709816	93709816	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003972	exon11	c.A1188C	p.K396N	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93733940	93733940	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003972	exon19	c.G2226T	p.E742D	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93743569	93743569	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003972	exon22	c.G3184A	p.D1062N	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93776914	93776914	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003972	exon37	c.A5283G	p.E1761E	.	.	.
IDE	3416	broad.mit.edu	36	10	94284449	94284449	+	Missense_Mutation	SNP	C	A	A	rs61078556	unknown	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004969	exon3	c.G357T	p.K119N	.	.	.
IDE	3416	broad.mit.edu	36	10	94287193	94287193	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004969	exon2	c.C193T	p.R65X	.	.	.
KIF11	3832	broad.mit.edu	36	10	94358799	94358799	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004523	exon5	c.T430A	p.F144I	.	.	.
HHEX	3087	broad.mit.edu	36	10	94444484	94444484	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002729	exon4	c.A792C	p.K264N	.	.	.
CYP26A1	1592	broad.mit.edu	36	10	94827048	94827048	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_057157	exon7	c.C1284A	p.I428I	.	.	.
MYOF	26509	broad.mit.edu	36	10	95085708	95085708	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133337	exon40	c.C4484T	p.S1495L	.	.	.
MYOF	26509	broad.mit.edu	36	10	95109664	95109664	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133337	exon28	c.G2997T	p.E999D	.	.	.
CEP55	55165	broad.mit.edu	36	10	95252892	95252892	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018131	exon3	c.G216T	p.K72N	.	.	.
CEP55	55165	broad.mit.edu	36	10	95269467	95269467	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018131	exon8	c.C1104T	p.L368L	.	.	.
PDE6C	5146	broad.mit.edu	36	10	95389856	95389856	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006204	exon12	c.G1522A	p.E508K	.	.	.
PDE6C	5146	broad.mit.edu	36	10	95389942	95389942	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006204	exon12	c.G1608T	p.E536D	.	.	.
FRA10AC1	118924	broad.mit.edu	36	10	95441822	95441822	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145246	exon7	c.G399T	p.K133N	.	.	.
FRA10AC1	118924	broad.mit.edu	36	10	95442427	95442427	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_145246	exon6	c.C346A	p.L116I	.	.	.
LGI1	9211	broad.mit.edu	36	10	95547474	95547474	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005097	exon8	c.G1598A	p.R533H	.	.	.
PLCE1	51196	broad.mit.edu	36	10	96054303	96054303	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001165979	exon24	c.C4609A	p.L1537M	.	.	.
PLCE1	51196	broad.mit.edu	36	10	96054385	96054385	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001165979	exon24	c.C4691A	p.S1564Y	.	.	.
NOC3L	64318	broad.mit.edu	36	10	96099964	96099964	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022451	exon9	c.G1024A	p.A342T	.	.	.
NOC3L	64318	broad.mit.edu	36	10	96102655	96102655	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022451	exon7	c.A846C	p.E282D	.	.	.
NOC3L	64318	broad.mit.edu	36	10	96102789	96102789	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022451	exon7	c.G712T	p.E238X	.	.	.
NOC3L	64318	broad.mit.edu	36	10	96104779	96104779	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022451	exon6	c.G627T	p.K209N	.	.	.
NOC3L	64318	broad.mit.edu	36	10	96107861	96107861	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022451	exon3	c.G319T	p.V107L	.	.	.
HELLS	3070	broad.mit.edu	36	10	96326539	96326539	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018063	exon10	c.G1019A	p.R340Q	.	.	.
CYP2C18	1562	broad.mit.edu	36	10	96456559	96456559	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000772	exon5	c.A671G	p.D224G	.	.	.
CYP2C9	1559	broad.mit.edu	36	10	96697598	96697598	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000771	exon4	c.A554C	p.K185T	.	.	.
CYP2C9	1559	broad.mit.edu	36	10	96738599	96738599	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000771	exon9	c.C1297T	p.R433W	.	.	.
CYP2C9	1559	broad.mit.edu	36	10	96738664	96738664	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000771	exon9	c.G1362T	p.Q454H	.	.	.
CYP2C8	1558	broad.mit.edu	36	10	96808108	96808108	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000770	exon5	c.G793A	p.D265N	.	.	.
CYP2C8	1558	broad.mit.edu	36	10	96814632	96814632	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000770	exon4	c.G557A	p.R186Q	.	.	.
PDLIM1	9124	broad.mit.edu	36	10	96997017	96997017	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020992	exon5	c.G630A	p.P210P	.	.	.
SORBS1	10580	broad.mit.edu	36	10	97101101	97101101	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001034957	exon15	c.G1355A	p.R452Q	.	.	.
SORBS1	10580	broad.mit.edu	36	10	97104651	97104651	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001034957	exon14	c.G1310A	p.R437Q	.	.	.
SORBS1	10580	broad.mit.edu	36	10	97125800	97125800	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001034954	exon17	c.C1657T	p.R553W	.	.	.
TCTN3	26123	broad.mit.edu	36	10	97413928	97413928	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001143973	exon10	c.C1266A	p.F422L	.	.	.
CC2D2B	387707	broad.mit.edu	36	10	97781703	97781703	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001732	exon9	c.A917G	p.N306S	.	.	.
CCNJ	54619	broad.mit.edu	36	10	97800164	97800164	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019084	exon3	c.C231T	p.I77I	.	.	.
ZNF518A	9849	broad.mit.edu	36	10	97910122	97910122	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014803	exon6	c.C4053A	p.I1351I	.	.	.
OPALIN	93377	broad.mit.edu	36	10	98105010	98105010	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033207	exon2	c.G31A	p.A11T	.	.	.
TLL2	7093	broad.mit.edu	36	10	98123390	98123390	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012465	exon19	c.C2615T	p.S872L	.	.	.
TLL2	7093	broad.mit.edu	36	10	98126523	98126523	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012465	exon18	c.G2364A	p.A788A	.	.	.
PIK3AP1	118788	broad.mit.edu	36	10	98406620	98406620	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152309	exon3	c.G492A	p.S164S	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98780571	98780571	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003061	exon25	c.C2515A	p.L839I	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98796499	98796499	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003061	exon18	c.C1755T	p.F585F	.	.	.
ARHGAP19	84986	broad.mit.edu	36	10	99013331	99013331	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032900	exon4	c.G449A	p.R150Q	.	.	.
GOLGA7B	401647	broad.mit.edu	36	10	99609230	99609230	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001010917	exon2	c.G38A	p.R13Q	.	.	.
CRTAC1	55118	broad.mit.edu	36	10	99630049	99630049	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018058	exon14	c.A1766G	p.N589S	.	.	.
CRTAC1	55118	broad.mit.edu	36	10	99630111	99630111	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018058	exon14	c.C1704T	p.F568F	.	.	.
C10orf28	27291	broad.mit.edu	36	10	99957923	99957923	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014472	exon4	c.T62C	p.V21A	.	.	.
ERAP1	51752	broad.mit.edu	36	5	96145416	96145417	+	Frame_Shift_Del	DEL	TT	-	-	novel		TCGA-AG-A002-01	TCGA-AG-A002-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040458	exon14	c.2067_2068del	p.689_690del	.	.	.
SLCO4C1	353189	broad.mit.edu	36	5	101659835	101659835	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_180991	exon1	c.G31A	p.A11T	.	.	.
PAM	5066	broad.mit.edu	36	5	102371247	102371247	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138822	exon19	c.T2202G	p.I734M	.	.	.
GIN1	54826	broad.mit.edu	36	5	102460330	102460330	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017676	exon7	c.G1108A	p.V370I	.	.	.
GIN1	54826	broad.mit.edu	36	5	102470450	102470450	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017676	exon3	c.G202T	p.E68X	.	.	.
PPIP5K2	23262	broad.mit.edu	36	5	102530899	102530899	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015216	exon17	c.C2038T	p.R680X	.	.	.
FAM173B	134145	broad.mit.edu	36	5	10280742	10280742	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199133	exon5	c.G513T	p.K171N	.	.	.
FAM173B	134145	broad.mit.edu	36	5	10292294	10292294	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_199133	exon2	c.G191A	p.R64Q	.	.	.
CCT5	22948	broad.mit.edu	36	5	10315652	10315652	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012073	exon9	c.C1239T	p.I413I	.	.	.
MARCH6	10299	broad.mit.edu	36	5	10443608	10443608	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005885	exon6	c.A572G	p.N191S	.	.	.
MARCH6	10299	broad.mit.edu	36	5	10486737	10486737	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005885	exon26	c.G2674A	p.E892K	.	.	.
EFNA5	1946	broad.mit.edu	36	5	106750883	106750883	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001962	exon4	c.C517T	p.R173C	.	.	.
EFNA5	1946	broad.mit.edu	36	5	106790861	106790861	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001962	exon2	c.C374T	p.S125F	.	.	.
EFNA5	1946	broad.mit.edu	36	5	106790964	106790964	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001962	exon2	c.G271A	p.D91N	.	.	.
FBXL17	64839	broad.mit.edu	36	5	107549760	107549760	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001163315	exon6	c.C1702A	p.L568I	.	.	.
DAP	1611	broad.mit.edu	36	5	10801365	10801365	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004394	exon2	c.G74A	p.R25Q	.	.	.
FER	2241	broad.mit.edu	36	5	108196495	108196495	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005246	exon4	c.G333T	p.K111N	.	.	.
FER	2241	broad.mit.edu	36	5	108247074	108247074	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005246	exon9	c.G1002T	p.E334D	.	.	.
FER	2241	broad.mit.edu	36	5	108410752	108410752	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005246	exon16	c.T1878C	p.V626V	.	.	.
MAN2A1	4124	broad.mit.edu	36	5	109183461	109183461	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002372	exon14	c.C2302T	p.R768W	.	.	.
MAN2A1	4124	broad.mit.edu	36	5	109183916	109183916	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002372	exon15	c.C2425A	p.L809I	.	.	.
SLC25A46	91137	broad.mit.edu	36	5	110119081	110119081	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138773	exon6	c.G581T	p.W194L	.	.	.
SLC25A46	91137	broad.mit.edu	36	5	110125344	110125344	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138773	exon8	c.A1220C	p.K407T	.	.	.
CAMK4	814	broad.mit.edu	36	5	110738489	110738489	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001744	exon3	c.C283T	p.R95C	.	.	.
STARD4	134429	broad.mit.edu	36	5	110865678	110865678	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139164	exon4	c.G163T	p.A55S	.	.	.
EPB41L4A	64097	broad.mit.edu	36	5	111547612	111547612	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022140	exon18	c.C1622T	p.S541L	.	.	.
EPB41L4A	64097	broad.mit.edu	36	5	111558168	111558168	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022140	exon17	c.A1498C	p.N500H	.	.	.
EPB41L4A	64097	broad.mit.edu	36	5	111628532	111628532	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022140	exon6	c.G514T	p.E172X	.	.	.
APC	324	broad.mit.edu	36	5	112130970	112130970	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127511	exon3	c.G436A	p.E146K	.	.	.
APC	324	broad.mit.edu	36	5	112201511	112201511	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127511	exon14	c.A2267G	p.D756G	.	.	.
APC	324	broad.mit.edu	36	5	112203389	112203389	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127511	exon14	c.C4145T	p.S1382L	APC,large_intestine,colon,Substitution - Nonsense,0	.	.
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127511	exon14	c.C4294T	p.R1432X	APC,large_intestine,rectum,Substitution - Nonsense,0	.	.
APC	324	broad.mit.edu	36	5	112203796	112203796	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127511	exon14	c.G4552T	p.E1518X	APC,large_intestine,right,Substitution - Nonsense,0	.	.
APC	324	broad.mit.edu	36	5	112207472	112207472	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127511	exon14	c.C8228T	p.P2743L	.	.	.
MCC	4163	broad.mit.edu	36	5	112392556	112392556	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001085377	exon18	c.C2853T	p.F951F	.	.	.
TSSK1B	83942	broad.mit.edu	36	5	112798411	112798411	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032028	exon1	c.C25T	p.R9X	.	.	.
YTHDC2	64848	broad.mit.edu	36	5	112890259	112890259	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022828	exon4	c.G553A	p.E185K	.	.	.
YTHDC2	64848	broad.mit.edu	36	5	112956944	112956944	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022828	exon29	c.C4258T	p.R1420C	.	.	.
KCNN2	3781	broad.mit.edu	36	5	113859547	113859547	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021614	exon8	c.C1509T	p.F503F	.	.	.
PGGT1B	5229	broad.mit.edu	36	5	114585551	114585551	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005023	exon7	c.G712T	p.E238X	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11464651	11464651	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001332	exon5	c.G436T	p.E146X	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11465150	11465150	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001332	exon4	c.C319T	p.Q107X	.	.	.
SLC12A7	10723	broad.mit.edu	36	5	1147320	1147320	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006598	exon2	c.C168T	p.V56V	.	.	.
AP3S1	1176	broad.mit.edu	36	5	115230321	115230321	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001284	exon2	c.G125T	p.R42I	.	.	.
AQPEP	206338	broad.mit.edu	36	5	115363363	115363363	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173800	exon7	c.G1380T	p.E460D	.	.	.
COMMD10	51397	broad.mit.edu	36	5	115456219	115456219	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016144	exon4	c.G322T	p.A108S	.	.	.
DMXL1	1657	broad.mit.edu	36	5	118497104	118497104	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005509	exon12	c.G1586T	p.R529I	.	.	.
DMXL1	1657	broad.mit.edu	36	5	118497556	118497556	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005509	exon12	c.G2038T	p.E680X	.	.	.
DMXL1	1657	broad.mit.edu	36	5	118513074	118513074	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005509	exon18	c.C3653A	p.S1218Y	.	.	.
DMXL1	1657	broad.mit.edu	36	5	118513182	118513182	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005509	exon18	c.C3761T	p.S1254L	.	.	.
PRR16	51334	broad.mit.edu	36	5	120049741	120049741	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016644	exon3	c.G284A	p.R95K	.	.	.
SRFBP1	153443	broad.mit.edu	36	5	121383884	121383884	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152546	exon6	c.G555T	p.K185N	.	.	.
SRFBP1	153443	broad.mit.edu	36	5	121384387	121384387	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152546	exon6	c.G1058T	p.S353I	.	.	.
SRFBP1	153443	broad.mit.edu	36	5	121390658	121390658	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152546	exon8	c.C1228T	p.R410X	.	.	.
ZNF474	133923	broad.mit.edu	36	5	121515709	121515709	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_207317	exon2	c.C125T	p.S42F	.	.	.
SNCAIP	9627	broad.mit.edu	36	5	121795648	121795648	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005460	exon6	c.T1268G	p.L423R	.	.	.
SNCAIP	9627	broad.mit.edu	36	5	121804313	121804313	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005460	exon7	c.G1387A	p.V463I	.	.	.
SNX2	6643	broad.mit.edu	36	5	122191188	122191188	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003100	exon14	c.T1457G	p.F486C	.	.	.
CEP120	153241	broad.mit.edu	36	5	122741985	122741985	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166226	exon15	c.A2062T	p.K688X	.	.	.
CSNK1G3	1456	broad.mit.edu	36	5	122939381	122939381	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001044723	exon6	c.G498T	p.E166D	.	.	.
ZNF608	57507	broad.mit.edu	36	5	124064732	124064732	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020747	exon2	c.C1036T	p.R346W	.	.	.
ZNF608	57507	broad.mit.edu	36	5	124064826	124064826	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020747	exon2	c.G942A	p.P314P	.	.	.
ALDH7A1	501	broad.mit.edu	36	5	125909921	125909921	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001182	exon17	c.C1559T	p.S520F	.	.	.
LMNB1	4001	broad.mit.edu	36	5	126182583	126182583	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005573	exon6	c.G1010A	p.R337H	.	.	.
SLC12A2	6558	broad.mit.edu	36	5	127476499	127476499	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001046	exon2	c.A851C	p.K284T	.	.	.
SLC12A2	6558	broad.mit.edu	36	5	127497796	127497796	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001046	exon6	c.G1229A	p.R410Q	.	.	.
FBN2	2201	broad.mit.edu	36	5	127664460	127664460	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001999	exon48	c.C6114A	p.S2038S	.	.	.
FBN2	2201	broad.mit.edu	36	5	127668671	127668671	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001999	exon45	c.C5677T	p.R1893C	.	.	.
FBN2	2201	broad.mit.edu	36	5	127696591	127696591	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001999	exon32	c.C4134T	p.C1378C	.	.	.
FBN2	2201	broad.mit.edu	36	5	127702566	127702566	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001999	exon26	c.G3430A	p.E1144K	.	.	.
FBN2	2201	broad.mit.edu	36	5	127882915	127882915	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001999	exon5	c.C578A	p.P193H	.	.	.
SLC27A6	28965	broad.mit.edu	36	5	128330013	128330013	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001017372	exon1	c.T284C	p.V95A	.	.	.
SLC27A6	28965	broad.mit.edu	36	5	128396866	128396866	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001017372	exon10	c.A1852C	p.K618Q	.	.	.
ADAMTS19	171019	broad.mit.edu	36	5	128984346	128984346	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_133638	exon9	c.C1597T	p.L533F	.	.	.
ADAMTS19	171019	broad.mit.edu	36	5	128985840	128985840	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133638	exon10	c.C1652A	p.S551Y	.	.	.
ADAMTS19	171019	broad.mit.edu	36	5	129058416	129058416	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133638	exon19	c.C2905T	p.R969X	.	.	.
CDC42SE2	56990	broad.mit.edu	36	5	130754635	130754635	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001038702	exon4	c.A207C	p.G69G	.	.	.
RAPGEF6	51735	broad.mit.edu	36	5	130794660	130794660	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164387	exon28	c.G4295T	p.R1432I	.	.	.
RAPGEF6	51735	broad.mit.edu	36	5	130816704	130816704	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164387	exon22	c.C3157T	p.R1053C	.	.	.
FNIP1	96459	broad.mit.edu	36	5	131036298	131036298	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133372	exon14	c.G1738A	p.E580K	.	.	.
ACSL6	23305	broad.mit.edu	36	5	131333732	131333732	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001009185	exon15	c.G1495T	p.D499Y	.	.	.
SLC22A5	6584	broad.mit.edu	36	5	131756196	131756196	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003060	exon8	c.C1440T	p.F480F	.	.	.
RAD50	10111	broad.mit.edu	36	5	131920976	131920976	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005732	exon1	c.G61T	p.D21Y	.	.	.
RAD50	10111	broad.mit.edu	36	5	131943027	131943027	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005732	exon4	c.C485A	p.S162Y	.	.	.
RAD50	10111	broad.mit.edu	36	5	131943478	131943478	+	Missense_Mutation	SNP	C	T	T	rs28903087	by-cluster	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005732	exon5	c.C577T	p.R193W	.	.	.
RAD50	10111	broad.mit.edu	36	5	131953413	131953413	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005732	exon9	c.G1437T	p.Q479H	.	.	.
KIF3A	11127	broad.mit.edu	36	5	132066560	132066560	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007054	exon11	c.G1482T	p.E494D	.	.	.
SHROOM1	134549	broad.mit.edu	36	5	132188918	132188918	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133456	exon1	c.G814A	p.E272K	.	.	.
AFF4	27125	broad.mit.edu	36	5	132259917	132259917	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014423	exon11	c.T2304A	p.H768Q	.	.	.
AFF4	27125	broad.mit.edu	36	5	132260736	132260736	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014423	exon11	c.C1485T	p.N495N	.	.	.
AFF4	27125	broad.mit.edu	36	5	132266066	132266066	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014423	exon7	c.C1100A	p.P367H	.	.	.
HSPA4	3308	broad.mit.edu	36	5	132440403	132440403	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002154	exon7	c.G822T	p.K274N	.	.	.
HSPA4	3308	broad.mit.edu	36	5	132452076	132452076	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002154	exon9	c.A1067C	p.K356T	.	.	.
HSPA4	3308	broad.mit.edu	36	5	132467558	132467558	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002154	exon18	c.A2260G	p.K754E	.	.	.
TCF7	6932	broad.mit.edu	36	5	133501697	133501697	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003202	exon4	c.G490A	p.E164K	.	.	.
TCF7	6932	broad.mit.edu	36	5	133506365	133506365	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003202	exon7	c.G810T	p.K270N	.	.	.
CDKL3	51265	broad.mit.edu	36	5	133668078	133668078	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001113575	exon11	c.A1538G	p.N513S	.	.	.
PHF15	23338	broad.mit.edu	36	5	133901585	133901585	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015288	exon3	c.G66A	p.A22A	.	.	.
SEC24A	10802	broad.mit.edu	36	5	134081661	134081661	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_021982	exon20	c.G2869A	p.A957T	.	.	.
DDX46	9879	broad.mit.edu	36	5	134145530	134145530	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014829	exon8	c.A900C	p.E300D	.	.	.
DDX46	9879	broad.mit.edu	36	5	134175305	134175305	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014829	exon18	c.G2307T	p.K769N	.	.	.
DDX46	9879	broad.mit.edu	36	5	134182551	134182551	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014829	exon21	c.G2932T	p.E978X	.	.	.
TXNDC15	79770	broad.mit.edu	36	5	134263219	134263219	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024715	exon5	c.G1028A	p.R343Q	.	.	.
H2AFY	9555	broad.mit.edu	36	5	134714424	134714424	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138609	exon6	c.G667A	p.G223S	.	.	.
H2AFY	9555	broad.mit.edu	36	5	134752584	134752584	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004893	exon2	c.G99T	p.K33N	.	.	.
CXCL14	9547	broad.mit.edu	36	5	134935450	134935450	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004887	exon4	c.G328A	p.E110K	.	.	.
SLC25A48	153328	broad.mit.edu	36	5	135216403	135216403	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145282	exon4	c.C415T	p.R139W	.	.	.
IL9	3578	broad.mit.edu	36	5	135256062	135256062	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000590	exon5	c.G352A	p.A118T	.	.	.
FBXL21	26223	broad.mit.edu	36	5	135300411	135300411	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012159	exon5	c.C229A	p.H77N	.	.	.
FBXL21	26223	broad.mit.edu	36	5	135304179	135304179	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012159	exon7	c.C592A	p.L198I	.	.	.
FBXL21	26223	broad.mit.edu	36	5	135304891	135304891	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012159	exon8	c.G937A	p.E313K	.	.	.
LECT2	3950	broad.mit.edu	36	5	135314884	135314884	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002302	exon3	c.A216G	p.G72G	.	.	.
SMAD5	4090	broad.mit.edu	36	5	135517425	135517425	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001001419	exon4	c.A77G	p.E26G	.	.	.
TRPC7	57113	broad.mit.edu	36	5	135629971	135629971	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020389	exon5	c.C1181A	p.S394Y	.	.	.
TRPC7	57113	broad.mit.edu	36	5	135679347	135679347	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020389	exon3	c.C800A	p.S267Y	.	.	.
SPOCK1	6695	broad.mit.edu	36	5	136476104	136476104	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004598	exon5	c.G393A	p.S131S	.	.	.
KLHL3	26249	broad.mit.edu	36	5	137025584	137025584	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017415	exon7	c.G672T	p.E224D	.	.	.
MYOT	9499	broad.mit.edu	36	5	137234252	137234252	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006790	exon2	c.G13A	p.E5K	.	.	.
MYOT	9499	broad.mit.edu	36	5	137234418	137234418	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006790	exon2	c.C179T	p.S60F	.	.	.
MYOT	9499	broad.mit.edu	36	5	137245616	137245616	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006790	exon6	c.T739G	p.F247V	.	.	.
MYOT	9499	broad.mit.edu	36	5	137250898	137250898	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006790	exon10	c.A1422G	p.K474K	.	.	.
FAM13B	51306	broad.mit.edu	36	5	137303829	137303829	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016603	exon23	c.C2732A	p.S911Y	.	.	.
FAM13B	51306	broad.mit.edu	36	5	137370587	137370587	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016603	exon7	c.C839T	p.T280M	.	.	.
FAM13B	51306	broad.mit.edu	36	5	137381950	137381950	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016603	exon4	c.G310T	p.E104X	.	.	.
WNT8A	7478	broad.mit.edu	36	5	137454318	137454318	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_058244	exon6	c.C713T	p.A238V	.	.	.
BRD8	10902	broad.mit.edu	36	5	137516300	137516300	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139199	exon21	c.G2626T	p.D876Y	.	.	.
CDC25C	995	broad.mit.edu	36	5	137655663	137655663	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001790	exon8	c.G657T	p.E219D	.	.	.
FAM53C	51307	broad.mit.edu	36	5	137708422	137708422	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135647	exon4	c.C146T	p.S49F	.	.	.
FAM53C	51307	broad.mit.edu	36	5	137709197	137709197	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135647	exon4	c.G921T	p.Q307H	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13774199	13774199	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon71	c.G12189T	p.G4063G	.	.	.
KDM3B	51780	broad.mit.edu	36	5	137754829	137754829	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016604	exon8	c.A1609C	p.S537R	.	.	.
KDM3B	51780	broad.mit.edu	36	5	137793918	137793918	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016604	exon22	c.C4975T	p.R1659C	.	.	.
REEP2	51308	broad.mit.edu	36	5	137804642	137804642	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016606	exon2	c.A71G	p.Y24C	.	.	.
ETF1	2107	broad.mit.edu	36	5	137875073	137875073	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004730	exon7	c.G852T	p.K284N	.	.	.
CTNNA1	1495	broad.mit.edu	36	5	138145561	138145561	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001903	exon2	c.A49C	p.S17R	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13822110	13822110	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon58	c.G9856A	p.A3286T	.	.	.
LRRTM2	26045	broad.mit.edu	36	5	138237344	138237344	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015564	exon2	c.G805T	p.D269Y	.	.	.
LRRTM2	26045	broad.mit.edu	36	5	138237680	138237680	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015564	exon2	c.C469T	p.R157W	.	.	.
LRRTM2	26045	broad.mit.edu	36	5	138237921	138237921	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015564	exon2	c.C228T	p.L76L	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13830394	13830394	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon54	c.G9022T	p.G3008X	.	.	.
SIL1	64374	broad.mit.edu	36	5	138315444	138315444	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001037633	exon9	c.G796A	p.E266K	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13845162	13845162	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon50	c.C8389T	p.L2797F	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13846683	13846683	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon49	c.G8165T	p.R2722M	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13860783	13860783	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon47	c.G7804T	p.G2602X	.	.	.
MATR3	9782	broad.mit.edu	36	5	138689119	138689119	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001194955	exon13	c.C2240A	p.S747Y	.	.	.
CLPTM1L	81037	broad.mit.edu	36	5	1387416	1387416	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030782	exon7	c.C879T	p.V293V	.	.	.
SLC23A1	9963	broad.mit.edu	36	5	138746170	138746170	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005847	exon2	c.G60A	p.S20S	.	.	.
DNAJC18	202052	broad.mit.edu	36	5	138783705	138783705	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152686	exon7	c.G888A	p.E296E	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13883838	13883838	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon36	c.G5929T	p.A1977S	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13892610	13892610	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon35	c.G5737T	p.D1913Y	.	.	.
PSD2	84249	broad.mit.edu	36	5	139197422	139197422	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032289	exon12	c.C1694T	p.S565L	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13921025	13921025	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon25	c.A3911G	p.Y1304C	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13924031	13924031	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon24	c.A3679G	p.S1227G	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13924755	13924755	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon23	c.G3516T	p.Q1172H	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13929877	13929877	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon22	c.G3312T	p.K1104N	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13938136	13938136	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon19	c.G2945A	p.R982H	.	.	.
PFDN1	5201	broad.mit.edu	36	5	139641220	139641220	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002622	exon3	c.G283T	p.E95X	.	.	.
SLC4A9	83697	broad.mit.edu	36	5	139732064	139732064	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031467	exon20	c.G2724T	p.Q908H	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13973716	13973716	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001369	exon6	c.G671A	p.R224Q	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13976496	13976496	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon4	c.C331A	p.P111T	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13981280	13981280	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001369	exon3	c.G200T	p.R67I	.	.	.
ANKHD1-EIF4EBP3	404734	broad.mit.edu	36	5	139886185	139886185	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017747	exon26	c.G4913T	p.S1638I	.	.	.
ANKHD1-EIF4EBP3	404734	broad.mit.edu	36	5	139889201	139889201	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017747	exon29	c.G6486A	p.T2162T	.	.	.
HARS2	23438	broad.mit.edu	36	5	140057440	140057440	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012208	exon11	c.G1300A	p.D434N	.	.	.
PCDHA1	56147	broad.mit.edu	36	5	140147466	140147466	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031410	exon1	c.G1407A	p.P469P	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140161299	140161299	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031497	exon1	c.C333G	p.D111E	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140161768	140161768	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031497	exon1	c.G802A	p.D268N	.	.	.
PCDHA4	56144	broad.mit.edu	36	5	140167338	140167338	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031500	exon1	c.G382A	p.D128N	.	.	.
PCDHA4	56144	broad.mit.edu	36	5	140167906	140167906	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031500	exon1	c.A950C	p.E317A	.	.	.
PCDHA4	56144	broad.mit.edu	36	5	140168774	140168774	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031500	exon1	c.G1818A	p.W606X	.	.	.
PCDHA5	56143	broad.mit.edu	36	5	140183648	140183648	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018908	exon1	c.G2104A	p.A702T	.	.	.
PCDHA6	56142	broad.mit.edu	36	5	140188451	140188451	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018909	exon1	c.G591T	p.K197N	.	.	.
PCDHA6	56142	broad.mit.edu	36	5	140188810	140188810	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018909	exon1	c.A950G	p.K317R	.	.	.
PCDHA6	56142	broad.mit.edu	36	5	140189156	140189156	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018909	exon1	c.G1296A	p.S432S	.	.	.
PCDHA8	56140	broad.mit.edu	36	5	140201417	140201417	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031856	exon1	c.C327T	p.I109I	.	.	.
PCDHA9	9752	broad.mit.edu	36	5	140209893	140209893	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014005	exon1	c.G1629A	p.P543P	.	.	.
PCDHA9	9752	broad.mit.edu	36	5	140210023	140210023	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014005	exon1	c.G1759A	p.A587T	.	.	.
PCDHA9	9752	broad.mit.edu	36	5	140210193	140210193	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014005	exon1	c.G1929A	p.P643P	.	.	.
PCDHA9	9752	broad.mit.edu	36	5	140210681	140210681	+	Intron	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014005	exon1	c.T2417A	p.F806Y	.	.	.
PCDHA10	56139	broad.mit.edu	36	5	140215889	140215889	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031860	exon1	c.G72T	p.E24D	.	.	.
PCDHA10	56139	broad.mit.edu	36	5	140216186	140216186	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031860	exon1	c.G369T	p.K123N	.	.	.
PCDHA10	56139	broad.mit.edu	36	5	140216703	140216703	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031860	exon1	c.G886A	p.E296K	.	.	.
PCDHA11	56138	broad.mit.edu	36	5	140229674	140229674	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031861	exon1	c.G802T	p.D268Y	.	.	.
PCDHA12	56137	broad.mit.edu	36	5	140235481	140235481	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031864	exon1	c.G240T	p.Q80H	.	.	.
PCDHA12	56137	broad.mit.edu	36	5	140236081	140236081	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031864	exon1	c.G840A	p.G280G	.	.	.
PCDHA13	56136	broad.mit.edu	36	5	140242828	140242828	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031865	exon1	c.T791G	p.L264R	.	.	.
PCDHA13	56136	broad.mit.edu	36	5	140242923	140242923	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_031865	exon1	c.A886C	p.N296H	.	.	.
PCDHA13	56136	broad.mit.edu	36	5	140244432	140244432	+	Splice_Site	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031865	exon1	c.G2395A	p.V799I	.	.	.
PCDHAC1	56135	broad.mit.edu	36	5	140287699	140287699	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031882	exon1	c.G1038A	p.S346S	.	.	.
PCDHAC1	56135	broad.mit.edu	36	5	140288543	140288543	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031882	exon1	c.G1882A	p.D628N	.	.	.
PCDHAC2	56134	broad.mit.edu	36	5	140327261	140327261	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018899	exon1	c.G726T	p.Q242H	.	.	.
PCDHB1	29930	broad.mit.edu	36	5	140411503	140411503	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013340	exon1	c.G264T	p.E88D	.	.	.
PCDHB1	29930	broad.mit.edu	36	5	140412296	140412296	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013340	exon1	c.T1057C	p.S353P	.	.	.
PCDHB2	56133	broad.mit.edu	36	5	140454716	140454716	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018936	exon1	c.A158G	p.D53G	.	.	.
PCDHB2	56133	broad.mit.edu	36	5	140456255	140456255	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018936	exon1	c.C1697T	p.P566L	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140460715	140460715	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018937	exon1	c.G298T	p.E100X	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140461276	140461276	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018937	exon1	c.G859T	p.E287X	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140462541	140462541	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018937	exon1	c.C2124T	p.F708F	.	.	.
PCDHB5	26167	broad.mit.edu	36	5	140497134	140497134	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015669	exon1	c.A1934G	p.D645G	.	.	.
PCDHB5	26167	broad.mit.edu	36	5	140497321	140497321	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015669	exon1	c.C2121T	p.F707F	.	.	.
PCDHB6	56130	broad.mit.edu	36	5	140511646	140511646	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018939	exon1	c.G1624A	p.E542K	.	.	.
PCDHB6	56130	broad.mit.edu	36	5	140512126	140512126	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018939	exon1	c.T2104G	p.S702A	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140533000	140533000	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018940	exon1	c.C400A	p.L134I	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140533075	140533075	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018940	exon1	c.G475A	p.D159N	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140533357	140533357	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018940	exon1	c.G757A	p.E253K	.	.	.
PCDHB16	57717	broad.mit.edu	36	5	140544442	140544442	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020957	exon1	c.C2124T	p.F708F	.	.	.
PCDHB10	56126	broad.mit.edu	36	5	140553584	140553584	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018930	exon1	c.C1275A	p.D425E	.	.	.
PCDHB10	56126	broad.mit.edu	36	5	140553927	140553927	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018930	exon1	c.G1618A	p.A540T	.	.	.
PCDHB11	56125	broad.mit.edu	36	5	140559985	140559985	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018931	exon1	c.T454C	p.F152L	.	.	.
PCDHB12	56124	broad.mit.edu	36	5	140569687	140569687	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018932	exon1	c.G1024A	p.D342N	.	.	.
PCDHB12	56124	broad.mit.edu	36	5	140569837	140569837	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018932	exon1	c.G1174A	p.V392M	.	.	.
PCDHB13	56123	broad.mit.edu	36	5	140574809	140574809	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018933	exon1	c.C930T	p.F310F	.	.	.
PCDHB13	56123	broad.mit.edu	36	5	140575990	140575990	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018933	exon1	c.C2111T	p.S704L	.	.	.
PCDHB15	56121	broad.mit.edu	36	5	140606228	140606228	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018935	exon1	c.G898T	p.E300X	.	.	.
TAF7	6879	broad.mit.edu	36	5	140679046	140679046	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005642	exon1	c.G750T	p.E250D	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140690891	140690891	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031993	exon1	c.C456A	p.V152V	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140691514	140691514	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031993	exon1	c.T1079G	p.F360C	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140692822	140692822	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031993	exon1	c.C2387A	p.S796Y	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140700362	140700362	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032009	exon1	c.C1640A	p.S547X	.	.	.
PCDHGA3	56112	broad.mit.edu	36	5	140704157	140704157	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018916	exon1	c.G373T	p.D125Y	.	.	.
PCDHGA3	56112	broad.mit.edu	36	5	140705506	140705506	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018916	exon1	c.C1722T	p.G574G	.	.	.
PCDHGB1	56104	broad.mit.edu	36	5	140711113	140711113	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018922	exon1	c.C1102T	p.R368X	.	.	.
PCDHGB2	56103	broad.mit.edu	36	5	140720046	140720046	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018923	exon1	c.C160A	p.L54M	.	.	.
PCDHGA5	56110	broad.mit.edu	36	5	140724984	140724984	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032054	exon1	c.C903A	p.I301I	.	.	.
PCDHGB3	56102	broad.mit.edu	36	5	140730213	140730213	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018924	exon1	c.C68A	p.S23Y	.	.	.
PCDHGB3	56102	broad.mit.edu	36	5	140731560	140731560	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018924	exon1	c.C1415T	p.A472V	.	.	.
PCDHGB3	56102	broad.mit.edu	36	5	140731814	140731814	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018924	exon1	c.G1669A	p.D557N	.	.	.
PCDHGA6	56109	broad.mit.edu	36	5	140734032	140734032	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032086	exon1	c.C198T	p.I66I	.	.	.
PCDHGA6	56109	broad.mit.edu	36	5	140736073	140736073	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032086	exon1	c.C2239T	p.R747W	.	.	.
PCDHGA7	56108	broad.mit.edu	36	5	140743049	140743049	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032087	exon1	c.C399A	p.F133L	.	.	.
PCDHGA7	56108	broad.mit.edu	36	5	140744696	140744696	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032087	exon1	c.C2046T	p.D682D	.	.	.
PCDHGA7	56108	broad.mit.edu	36	5	140744788	140744788	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032087	exon1	c.C2138T	p.A713V	.	.	.
PCDHGB4	8641	broad.mit.edu	36	5	140749213	140749213	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032098	exon1	c.C1578T	p.F526F	.	.	.
PCDHGB4	8641	broad.mit.edu	36	5	140749305	140749305	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032098	exon1	c.C1670T	p.A557V	.	.	.
PCDHGA8	9708	broad.mit.edu	36	5	140754572	140754572	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032088	exon1	c.G2008A	p.E670K	.	.	.
PCDHGB5	56101	broad.mit.edu	36	5	140758503	140758503	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032099	exon1	c.C625T	p.R209C	.	.	.
PCDHGB5	56101	broad.mit.edu	36	5	140758943	140758943	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032099	exon1	c.C1065T	p.N355N	.	.	.
PCDHGB5	56101	broad.mit.edu	36	5	140759530	140759530	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032099	exon1	c.G1652A	p.R551Q	.	.	.
PCDHGA9	56107	broad.mit.edu	36	5	140763298	140763298	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018921	exon1	c.G595A	p.A199T	.	.	.
PCDHGA9	56107	broad.mit.edu	36	5	140763867	140763867	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018921	exon1	c.G1164T	p.E388D	.	.	.
PCDHGB6	56100	broad.mit.edu	36	5	140769135	140769135	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018926	exon1	c.T1182G	p.I394M	.	.	.
PCDHGB6	56100	broad.mit.edu	36	5	140769458	140769458	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018926	exon1	c.C1505T	p.S502L	.	.	.
PCDHGA10	56106	broad.mit.edu	36	5	140773637	140773637	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032090	exon1	c.C711T	p.F237F	.	.	.
PCDHGA10	56106	broad.mit.edu	36	5	140773749	140773749	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032090	exon1	c.G823A	p.E275K	.	.	.
PCDHGA10	56106	broad.mit.edu	36	5	140774654	140774654	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032090	exon1	c.C1728A	p.S576S	.	.	.
PCDHGB7	56099	broad.mit.edu	36	5	140777685	140777685	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032101	exon1	c.C75A	p.F25L	.	.	.
PCDHGB7	56099	broad.mit.edu	36	5	140778578	140778578	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032101	exon1	c.A968G	p.D323G	.	.	.
PCDHGB7	56099	broad.mit.edu	36	5	140778654	140778654	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032101	exon1	c.C1044A	p.I348I	.	.	.
PCDHGA11	56105	broad.mit.edu	36	5	140782127	140782127	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018914	exon1	c.C1149A	p.V383V	.	.	.
PCDHGA11	56105	broad.mit.edu	36	5	140782634	140782634	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018914	exon1	c.C1656T	p.F552F	.	.	.
PCDHGA12	26025	broad.mit.edu	36	5	140791574	140791574	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032094	exon1	c.C1064T	p.S355L	.	.	.
PCDHGA12	26025	broad.mit.edu	36	5	140791637	140791637	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032094	exon1	c.C1127A	p.S376Y	.	.	.
PCDHGA12	26025	broad.mit.edu	36	5	140791737	140791737	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032094	exon1	c.C1227A	p.V409V	.	.	.
PCDHGA12	26025	broad.mit.edu	36	5	140792196	140792196	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032094	exon1	c.C1686A	p.I562I	.	.	.
PCDHGC3	5098	broad.mit.edu	36	5	140837240	140837240	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032402	exon1	c.C1373A	p.S458Y	.	.	.
PCDHGC4	56098	broad.mit.edu	36	5	140845558	140845558	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032406	exon1	c.C634A	p.L212M	.	.	.
PCDHGC4	56098	broad.mit.edu	36	5	140845781	140845781	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032406	exon1	c.C857A	p.P286H	.	.	.
RELL2	285613	broad.mit.edu	36	5	140998034	140998034	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001130029	exon2	c.C58A	p.L20M	.	.	.
FCHSD1	89848	broad.mit.edu	36	5	141008998	141008998	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033449	exon6	c.G437A	p.R146Q	.	.	.
FCHSD1	89848	broad.mit.edu	36	5	141010136	141010136	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033449	exon3	c.G139T	p.A47S	.	.	.
ARAP3	64411	broad.mit.edu	36	5	141019638	141019638	+	Silent	SNP	C	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022481	exon22	c.G3159C	p.R1053R	.	.	.
ARAP3	64411	broad.mit.edu	36	5	141031085	141031085	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022481	exon13	c.G1921T	p.A641S	.	.	.
KIAA0141	9812	broad.mit.edu	36	5	141298421	141298421	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001142603	exon12	c.C1461T	p.L487L	.	.	.
PCDH12	51294	broad.mit.edu	36	5	141317077	141317077	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016580	exon1	c.C524A	p.S175Y	.	.	.
PCDH12	51294	broad.mit.edu	36	5	141317463	141317463	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016580	exon1	c.C138T	p.I46I	.	.	.
ARHGAP26	23092	broad.mit.edu	36	5	142573817	142573817	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015071	exon22	c.C2327T	p.S776L	.	.	.
NR3C1	2908	broad.mit.edu	36	5	142660462	142660462	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001018074	exon5	c.G1528T	p.E510X	.	.	.
NR3C1	2908	broad.mit.edu	36	5	142759746	142759746	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001018074	exon2	c.C852T	p.I284I	.	.	.
TRIO	7204	broad.mit.edu	36	5	14344124	14344124	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_007118	exon5	c.G840A	p.Q280Q	.	.	.
KCTD16	57528	broad.mit.edu	36	5	143567042	143567042	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020768	exon3	c.G572A	p.R191Q	.	.	.
TRIO	7204	broad.mit.edu	36	5	14389771	14389771	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007118	exon11	c.C1981T	p.R661W	.	.	.
GRXCR2	643226	broad.mit.edu	36	5	145226403	145226403	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001080516	exon2	c.G418T	p.D140Y	.	.	.
LARS	51520	broad.mit.edu	36	5	145482300	145482300	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020117	exon30	c.A3140C	p.K1047T	.	.	.
RBM27	54439	broad.mit.edu	36	5	145593321	145593321	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018989	exon7	c.G966A	p.G322G	.	.	.
POU4F3	5459	broad.mit.edu	36	5	145700170	145700170	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002700	exon2	c.G987T	p.Q329H	.	.	.
TCERG1	10915	broad.mit.edu	36	5	145816940	145816940	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040006	exon3	c.G287T	p.R96I	.	.	.
TCERG1	10915	broad.mit.edu	36	5	145819079	145819079	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040006	exon4	c.C878T	p.A293V	.	.	.
TCERG1	10915	broad.mit.edu	36	5	145863185	145863185	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040006	exon16	c.C2374T	p.R792X	.	.	.
TCERG1	10915	broad.mit.edu	36	5	145863724	145863724	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040006	exon17	c.G2629T	p.E877X	.	.	.
TCERG1	10915	broad.mit.edu	36	5	145870268	145870268	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040006	exon21	c.G3104A	p.R1035Q	.	.	.
STK32A	202374	broad.mit.edu	36	5	146639098	146639098	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001112724	exon4	c.C204A	p.V68V	.	.	.
DPYSL3	1809	broad.mit.edu	36	5	146775502	146775502	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001387	exon4	c.C441T	p.S147S	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	146996000	146996000	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014790	exon12	c.G1655T	p.R552I	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	147021001	147021001	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014790	exon3	c.G330T	p.E110D	.	.	.
SPINK5	11005	broad.mit.edu	36	5	147461166	147461166	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001127699	exon14	c.C1276T	p.Q426X	.	.	.
SPINK5	11005	broad.mit.edu	36	5	147485291	147485291	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001127698	exon29	c.A2751T	p.R917S	.	.	.
ANKH	56172	broad.mit.edu	36	5	14766763	14766763	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_054027	exon10	c.G1155A	p.A385A	.	.	.
HTR4	3360	broad.mit.edu	36	5	147869777	147869777	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000870	exon6	c.G511T	p.E171X	.	.	.
SH3TC2	79628	broad.mit.edu	36	5	148387541	148387541	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024577	exon11	c.C1947T	p.H649H	.	.	.
AFAP1L1	134265	broad.mit.edu	36	5	148699780	148699780	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152406	exon19	c.G2301T	p.K767N	.	.	.
SLC26A2	1836	broad.mit.edu	36	5	149337888	149337888	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000112	exon2	c.C480A	p.I160I	.	.	.
TIGD6	81789	broad.mit.edu	36	5	149356051	149356051	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030953	exon2	c.G54T	p.M18I	.	.	.
PDGFRB	5159	broad.mit.edu	36	5	149495386	149495386	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002609	exon3	c.G289T	p.E97X	.	.	.
ARSI	340075	broad.mit.edu	36	5	149657673	149657673	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001012301	exon2	c.G1007A	p.R336Q	.	.	.
TCOF1	6949	broad.mit.edu	36	5	149747685	149747685	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135243	exon18	c.G2887A	p.D963N	.	.	.
TCOF1	6949	broad.mit.edu	36	5	149753143	149753143	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135243	exon23	c.T3616G	p.Y1206D	.	.	.
TCOF1	6949	broad.mit.edu	36	5	149756476	149756476	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001135243	exon24	c.C4220T	p.S1407F	.	.	.
RBM22	55696	broad.mit.edu	36	5	150051568	150051568	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018047	exon11	c.C1201A	p.H401N	.	.	.
ANXA6	309	broad.mit.edu	36	5	150465022	150465022	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001155	exon24	c.G1816A	p.D606N	.	.	.
CCDC69	26112	broad.mit.edu	36	5	150558811	150558811	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015621	exon4	c.C259T	p.R87X	.	.	.
FAT2	2196	broad.mit.edu	36	5	150865613	150865613	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001447	exon23	c.G12756A	p.M4252I	.	.	.
FAT2	2196	broad.mit.edu	36	5	150891669	150891669	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001447	exon13	c.C9483A	p.S3161S	.	.	.
FAT2	2196	broad.mit.edu	36	5	150902189	150902189	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001447	exon9	c.G8692T	p.D2898Y	.	.	.
FAT2	2196	broad.mit.edu	36	5	150903486	150903486	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001447	exon9	c.G7395T	p.V2465V	.	.	.
FAT2	2196	broad.mit.edu	36	5	150903600	150903600	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001447	exon9	c.C7281A	p.F2427L	.	.	.
FAT2	2196	broad.mit.edu	36	5	150903749	150903749	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001447	exon9	c.G7132T	p.E2378X	.	.	.
FAT2	2196	broad.mit.edu	36	5	150904583	150904583	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001447	exon9	c.G6298A	p.G2100R	.	.	.
FAT2	2196	broad.mit.edu	36	5	150914335	150914335	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001447	exon4	c.C3726A	p.F1242L	.	.	.
FAT2	2196	broad.mit.edu	36	5	150925874	150925874	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001447	exon1	c.C2812A	p.L938M	.	.	.
FAT2	2196	broad.mit.edu	36	5	150928128	150928128	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001447	exon1	c.C558A	p.A186A	.	.	.
FAT2	2196	broad.mit.edu	36	5	150928574	150928574	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001447	exon1	c.T112C	p.Y38H	.	.	.
SPARC	6678	broad.mit.edu	36	5	151031407	151031407	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003118	exon5	c.G250A	p.E84K	.	.	.
G3BP1	10146	broad.mit.edu	36	5	151159719	151159719	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005754	exon9	c.G920A	p.R307Q	.	.	.
LPCAT1	79888	broad.mit.edu	36	5	1516877	1516877	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024830	exon14	c.C1494T	p.F498F	.	.	.
NMUR2	56923	broad.mit.edu	36	5	151764217	151764217	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020167	exon1	c.C651A	p.I217I	.	.	.
FAM114A2	10827	broad.mit.edu	36	5	153394601	153394601	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018691	exon2	c.G106T	p.G36C	.	.	.
LARP1	23367	broad.mit.edu	36	5	154152506	154152506	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015315	exon4	c.G465A	p.K155K	.	.	.
LARP1	23367	broad.mit.edu	36	5	154153636	154153636	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015315	exon6	c.G721A	p.D241N	.	.	.
LARP1	23367	broad.mit.edu	36	5	154159744	154159744	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015315	exon10	c.G1434T	p.E478D	.	.	.
C5orf4	10826	broad.mit.edu	36	5	154190579	154190579	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032385	exon5	c.G341A	p.R114Q	.	.	.
GEMIN5	25929	broad.mit.edu	36	5	154267380	154267380	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015465	exon16	c.C2359T	p.R787W	.	.	.
GEMIN5	25929	broad.mit.edu	36	5	154287200	154287200	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015465	exon7	c.T1018G	p.L340V	.	.	.
KIF4B	285643	broad.mit.edu	36	5	154375004	154375004	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099293	exon1	c.G1392T	p.E464D	.	.	.
KIF4B	285643	broad.mit.edu	36	5	154375645	154375645	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001099293	exon1	c.G2033A	p.R678Q	.	.	.
HAVCR1	26762	broad.mit.edu	36	5	156412189	156412189	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012206	exon3	c.G434A	p.R145Q	.	.	.
MED7	9443	broad.mit.edu	36	5	156498700	156498700	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001100816	exon2	c.G321T	p.E107D	.	.	.
FAM71B	153745	broad.mit.edu	36	5	156522777	156522777	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130899	exon2	c.G1077A	p.S359S	.	.	.
FAM71B	153745	broad.mit.edu	36	5	156525477	156525477	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_130899	exon1	c.A281C	p.K94T	.	.	.
ITK	3702	broad.mit.edu	36	5	156540575	156540575	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005546	exon1	c.C9T	p.N3N	.	.	.
ITK	3702	broad.mit.edu	36	5	156568515	156568515	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005546	exon2	c.G176A	p.R59Q	.	.	.
ITK	3702	broad.mit.edu	36	5	156570942	156570942	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005546	exon3	c.C310T	p.L104L	.	.	.
ITK	3702	broad.mit.edu	36	5	156601275	156601275	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005546	exon11	c.C1027T	p.Q343X	.	.	.
CYFIP2	26999	broad.mit.edu	36	5	156698717	156698717	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037333	exon22	c.C2460T	p.F820F	.	.	.
CYFIP2	26999	broad.mit.edu	36	5	156718638	156718638	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037333	exon24	c.C2721T	p.F907F	.	.	.
CYFIP2	26999	broad.mit.edu	36	5	156748972	156748972	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001037333	exon29	c.C3405T	p.F1135F	.	.	.
SOX30	11063	broad.mit.edu	36	5	157008395	157008395	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_007017	exon2	c.G1055A	p.R352Q	.	.	.
LSM11	134353	broad.mit.edu	36	5	157111065	157111065	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173491	exon2	c.C538T	p.R180W	.	.	.
CLINT1	9685	broad.mit.edu	36	5	157173816	157173816	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014666	exon4	c.G307T	p.E103X	.	.	.
RNF145	153830	broad.mit.edu	36	5	158518336	158518336	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199382	exon11	c.G1954A	p.D652N	.	.	.
RNF145	153830	broad.mit.edu	36	5	158518482	158518482	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001199382	exon11	c.C1808T	p.T603I	.	.	.
IL12B	3593	broad.mit.edu	36	5	158682800	158682800	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002187	exon3	c.C204A	p.V68V	.	.	.
ADRA1B	147	broad.mit.edu	36	5	159276719	159276719	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000679	exon1	c.C229T	p.R77W	.	.	.
ADRA1B	147	broad.mit.edu	36	5	159277051	159277051	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000679	exon1	c.G561A	p.P187P	.	.	.
TTC1	7265	broad.mit.edu	36	5	159424623	159424623	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003314	exon8	c.C852A	p.F284L	.	.	.
PWWP2A	114825	broad.mit.edu	36	5	159437747	159437747	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_052927	exon4	c.G1676T	p.R559I	.	.	.
PWWP2A	114825	broad.mit.edu	36	5	159452853	159452853	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001130864	exon2	c.G1382A	p.R461Q	.	.	.
C5orf54	63920	broad.mit.edu	36	5	159754016	159754016	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022090	exon2	c.C1060A	p.L354I	.	.	.
C5orf54	63920	broad.mit.edu	36	5	159754290	159754290	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022090	exon2	c.G786T	p.E262D	.	.	.
C5orf54	63920	broad.mit.edu	36	5	159754476	159754476	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022090	exon2	c.C600T	p.I200I	.	.	.
FBXL7	23194	broad.mit.edu	36	5	15981004	15981004	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012304	exon3	c.G133A	p.D45N	.	.	.
FBXL7	23194	broad.mit.edu	36	5	15989632	15989632	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012304	exon4	c.G813T	p.Q271H	.	.	.
GABRB2	2561	broad.mit.edu	36	5	160819427	160819427	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000813	exon5	c.A239G	p.D80G	.	.	.
MARCH11	441061	broad.mit.edu	36	5	16120624	16120624	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001102562	exon4	c.G1165T	p.D389Y	.	.	.
GABRA1	2554	broad.mit.edu	36	5	161250623	161250623	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127646	exon8	c.G845A	p.R282K	.	.	.
GABRA1	2554	broad.mit.edu	36	5	161256709	161256709	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127646	exon10	c.G1074T	p.K358N	.	.	.
GABRG2	2566	broad.mit.edu	36	5	161463490	161463490	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198904	exon6	c.G649T	p.E217X	.	.	.
GABRG2	2566	broad.mit.edu	36	5	161463589	161463589	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198904	exon6	c.G748A	p.E250K	.	.	.
CCNG1	900	broad.mit.edu	36	5	162798981	162798981	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004060	exon2	c.G141T	p.M47I	.	.	.
MAT2B	27430	broad.mit.edu	36	5	162877814	162877814	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013283	exon7	c.G872T	p.R291I	.	.	.
ZNF622	90441	broad.mit.edu	36	5	16511672	16511672	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033414	exon4	c.G1116T	p.K372N	.	.	.
FAM134B	54463	broad.mit.edu	36	5	16528211	16528211	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001034850	exon9	c.A1133G	p.E378G	.	.	.
MYO10	4651	broad.mit.edu	36	5	16723653	16723653	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012334	exon39	c.G5865A	p.S1955S	.	.	.
MYO10	4651	broad.mit.edu	36	5	16733091	16733091	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012334	exon33	c.G4507A	p.D1503N	.	.	.
MYO10	4651	broad.mit.edu	36	5	16754512	16754512	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012334	exon25	c.G2992A	p.E998K	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167554767	167554767	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001122679	exon15	c.C2762A	p.S921Y	.	.	.
MYO10	4651	broad.mit.edu	36	5	16756249	16756249	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012334	exon23	c.C2295T	p.V765V	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167563348	167563348	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001122679	exon18	c.C3480T	p.F1160F	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167578385	167578385	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001122679	exon23	c.G4884T	p.K1628N	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167622313	167622313	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001122679	exon29	c.C8218T	p.P2740S	.	.	.
WWC1	23286	broad.mit.edu	36	5	167788352	167788352	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001161661	exon13	c.G1982T	p.R661L	.	.	.
WWC1	23286	broad.mit.edu	36	5	167790986	167790986	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001161661	exon15	c.G2239A	p.D747N	.	.	.
RARS	5917	broad.mit.edu	36	5	167848314	167848314	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002887	exon2	c.C175T	p.R59X	.	.	.
PANK3	79646	broad.mit.edu	36	5	167923505	167923505	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024594	exon4	c.G779T	p.R260I	.	.	.
SLIT3	6586	broad.mit.edu	36	5	168112622	168112622	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003062	exon18	c.C1889T	p.S630L	.	.	.
MYO10	4651	broad.mit.edu	36	5	16847905	16847905	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012334	exon4	c.A317G	p.Y106C	.	.	.
CCDC99	54908	broad.mit.edu	36	5	168950793	168950793	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017785	exon3	c.A323G	p.E108G	.	.	.
CCDC99	54908	broad.mit.edu	36	5	168958078	168958078	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_017785	exon9	c.A1053C	p.E351D	.	.	.
CCDC99	54908	broad.mit.edu	36	5	168960871	168960871	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017785	exon11	c.A1334G	p.E445G	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169055507	169055507	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004946	exon10	c.C966A	p.P322P	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169073617	169073617	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004946	exon18	c.G1667A	p.S556N	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169409858	169409858	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004946	exon41	c.C4092T	p.R1364R	.	.	.
LCP2	3937	broad.mit.edu	36	5	169626445	169626445	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005565	exon10	c.G717A	p.T239T	.	.	.
KCNIP1	30820	broad.mit.edu	36	5	170072440	170072440	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001034837	exon2	c.C66T	p.I22I	.	.	.
KCNIP1	30820	broad.mit.edu	36	5	170081452	170081452	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001034838	exon4	c.C321T	p.F107F	.	.	.
RANBP17	64901	broad.mit.edu	36	5	170327948	170327948	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022897	exon14	c.A1672C	p.K558Q	.	.	.
RANBP17	64901	broad.mit.edu	36	5	170542978	170542978	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022897	exon18	c.C1977T	p.S659S	.	.	.
RANBP17	64901	broad.mit.edu	36	5	170559371	170559371	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022897	exon19	c.G2131T	p.E711X	.	.	.
RANBP17	64901	broad.mit.edu	36	5	170565163	170565163	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022897	exon20	c.C2173T	p.R725X	.	.	.
NPM1	4869	broad.mit.edu	36	5	170760472	170760472	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002520	exon8	c.A607C	p.N203H	.	.	.
STK10	6793	broad.mit.edu	36	5	171449966	171449966	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005990	exon10	c.G1560A	p.P520P	.	.	.
SH3PXD2B	285590	broad.mit.edu	36	5	171698388	171698388	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001017995	exon13	c.C2326A	p.P776T	.	.	.
SH3PXD2B	285590	broad.mit.edu	36	5	171706912	171706912	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001017995	exon11	c.C1042A	p.P348T	.	.	.
C5orf41	153222	broad.mit.edu	36	5	172450260	172450260	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001168393	exon4	c.G472A	p.D158N	.	.	.
C5orf41	153222	broad.mit.edu	36	5	172470256	172470256	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153607	exon6	c.G1543T	p.V515F	.	.	.
STC2	8614	broad.mit.edu	36	5	172685483	172685483	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_003714	exon2	c.T288C	p.D96D	.	.	.
CPEB4	80315	broad.mit.edu	36	5	173309137	173309137	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030627	exon6	c.C1477T	p.R493C	.	.	.
THOC3	84321	broad.mit.edu	36	5	175319630	175319630	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032361	exon6	c.G1004T	p.S335I	.	.	.
FAM153B	202134	broad.mit.edu	36	5	175461187	175461187	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001079529	exon12	c.G661A	p.E221K	.	.	.
HK3	3101	broad.mit.edu	36	5	176250696	176250696	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002115	exon4	c.G362A	p.R121K	.	.	.
UIMC1	51720	broad.mit.edu	36	5	176328308	176328308	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001199298	exon6	c.G1054T	p.D352Y	.	.	.
ZNF346	23567	broad.mit.edu	36	5	176410390	176410390	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012279	exon5	c.G550T	p.D184Y	.	.	.
NSD1	64324	broad.mit.edu	36	5	176598109	176598109	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022455	exon7	c.C4187T	p.T1396M	.	.	.
NSD1	64324	broad.mit.edu	36	5	176603865	176603865	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022455	exon9	c.G4366T	p.D1456Y	.	.	.
LMAN2	10960	broad.mit.edu	36	5	176697073	176697073	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006816	exon5	c.G572A	p.S191N	.	.	.
DBN1	1627	broad.mit.edu	36	5	176820115	176820115	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_080881	exon11	c.C885A	p.F295L	.	.	.
N4BP3	23138	broad.mit.edu	36	5	177481160	177481160	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015111	exon5	c.C1187T	p.A396V	.	.	.
HNRNPAB	3182	broad.mit.edu	36	5	177569873	177569873	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_031266	exon7	c.G922A	p.D308N	.	.	.
COL23A1	91522	broad.mit.edu	36	5	177601968	177601968	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173465	exon26	c.C1474T	p.R492W	.	.	.
ZNF354A	6940	broad.mit.edu	36	5	178071786	178071786	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005649	exon5	c.G1699A	p.A567T	.	.	.
ZNF354B	117608	broad.mit.edu	36	5	178242596	178242596	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_058230	exon5	c.T537C	p.F179F	.	.	.
ZNF354B	117608	broad.mit.edu	36	5	178242844	178242844	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_058230	exon5	c.G785T	p.R262I	.	.	.
ZFP2	80108	broad.mit.edu	36	5	178291369	178291369	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030613	exon5	c.G449T	p.R150I	.	.	.
ZNF454	285676	broad.mit.edu	36	5	178324569	178324569	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182594	exon5	c.C558A	p.V186V	.	.	.
ZNF454	285676	broad.mit.edu	36	5	178324934	178324934	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182594	exon5	c.C923T	p.A308V	.	.	.
ZNF354C	30832	broad.mit.edu	36	5	178438292	178438292	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014594	exon5	c.T253G	p.F85V	.	.	.
ZNF354C	30832	broad.mit.edu	36	5	178439266	178439266	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014594	exon5	c.A1227C	p.Q409H	.	.	.
MAML1	9794	broad.mit.edu	36	5	179125989	179125989	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014757	exon2	c.G1372T	p.D458Y	.	.	.
RASGEF1C	255426	broad.mit.edu	36	5	179474114	179474114	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_175062	exon11	c.G1117T	p.D373Y	.	.	.
MAPK9	5601	broad.mit.edu	36	5	179602194	179602194	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139070	exon8	c.C856T	p.R286X	.	.	.
GFPT2	9945	broad.mit.edu	36	5	179662170	179662170	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005110	exon18	c.C1863T	p.C621C	.	.	.
CNOT6	57472	broad.mit.edu	36	5	179928754	179928754	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015455	exon10	c.C1066A	p.L356I	.	.	.
MGAT1	4245	broad.mit.edu	36	5	180151631	180151631	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002406	exon2	c.G947A	p.R316H	.	.	.
BTNL3	10917	broad.mit.edu	36	5	180365012	180365012	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_197975	exon8	c.G935T	p.R312I	.	.	.
TRIM41	90933	broad.mit.edu	36	5	180584320	180584320	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033549	exon1	c.G715A	p.E239K	.	.	.
TRIM41	90933	broad.mit.edu	36	5	180593913	180593913	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033549	exon6	c.A1425G	p.V475V	.	.	.
CDH18	1016	broad.mit.edu	36	5	19519339	19519339	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004934	exon12	c.C1710A	p.I570I	.	.	.
CDH18	1016	broad.mit.edu	36	5	19607629	19607629	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004934	exon8	c.C1069T	p.R357C	.	.	.
CDH18	1016	broad.mit.edu	36	5	19626926	19626926	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004934	exon7	c.G996T	p.K332N	.	.	.
PLEKHG4B	153478	broad.mit.edu	36	5	209195	209195	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052909	exon8	c.G1150A	p.E384K	.	.	.
CDH12	1010	broad.mit.edu	36	5	21852897	21852897	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004061	exon9	c.T916C	p.Y306H	.	.	.
CDH12	1010	broad.mit.edu	36	5	21878138	21878138	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004061	exon8	c.G703T	p.V235L	.	.	.
PLEKHG4B	153478	broad.mit.edu	36	5	222510	222510	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_052909	exon12	c.C2464A	p.R822R	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23562319	23562319	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020227	exon11	c.G1365T	p.E455D	.	.	.
CDH10	1008	broad.mit.edu	36	5	24523567	24523567	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006727	exon12	c.G2329T	p.E777X	.	.	.
CDH10	1008	broad.mit.edu	36	5	24545679	24545679	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006727	exon7	c.G1009A	p.D337N	.	.	.
CDH9	1007	broad.mit.edu	36	5	26921893	26921893	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016279	exon10	c.C1569A	p.F523L	.	.	.
CDH9	1007	broad.mit.edu	36	5	26925743	26925743	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016279	exon9	c.T1471C	p.Y491H	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31550901	31550901	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_013235	exon7	c.G1241A	p.R414Q	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32019070	32019070	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178140	exon2	c.C529T	p.R177C	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32019170	32019170	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178140	exon2	c.C629T	p.A210V	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32096965	32096965	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178140	exon13	c.C2419T	p.R807C	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32110479	32110479	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178140	exon17	c.C3510T	p.G1170G	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32124690	32124690	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_178140	exon19	c.C5379T	p.I1793I	.	.	.
MTMR12	54545	broad.mit.edu	36	5	32274899	32274899	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040446	exon13	c.C1309T	p.R437C	.	.	.
MTMR12	54545	broad.mit.edu	36	5	32309862	32309862	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040446	exon3	c.A266C	p.E89A	.	.	.
ZFR	51663	broad.mit.edu	36	5	32400101	32400101	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016107	exon18	c.C2873T	p.A958V	.	.	.
ZFR	51663	broad.mit.edu	36	5	32415030	32415030	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016107	exon17	c.T2783C	p.I928T	.	.	.
ZFR	51663	broad.mit.edu	36	5	32426182	32426182	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016107	exon12	c.C2098A	p.L700M	.	.	.
C5orf23	79614	broad.mit.edu	36	5	32825411	32825411	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024563	exon1	c.G147T	p.G49G	.	.	.
TARS	6897	broad.mit.edu	36	5	33502807	33502807	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152295	exon18	c.G1983T	p.K661N	.	.	.
TARS	6897	broad.mit.edu	36	5	33503559	33503559	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152295	exon19	c.G2161T	p.E721X	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33612951	33612951	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030955	exon19	c.C2937T	p.C979C	ADAMTS12,kidney,NS,Substitution - coding silent,0	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33651917	33651917	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030955	exon15	c.C2161T	p.L721F	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33697843	33697843	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_030955	exon6	c.G975A	p.Q325Q	.	.	.
RXFP3	51289	broad.mit.edu	36	5	33973052	33973052	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016568	exon1	c.C450T	p.F150F	.	.	.
SLC45A2	51151	broad.mit.edu	36	5	33999607	33999607	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001012509	exon3	c.C834T	p.Y278Y	.	.	.
SLC45A2	51151	broad.mit.edu	36	5	34018191	34018191	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001012509	exon2	c.G469A	p.D157N	.	.	.
SLC45A2	51151	broad.mit.edu	36	5	34020226	34020226	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001012509	exon1	c.T220C	p.W74R	.	.	.
AMACR	23600	broad.mit.edu	36	5	34025015	34025015	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014324	exon5	c.G1089T	p.E363D	.	.	.
AMACR	23600	broad.mit.edu	36	5	34025273	34025273	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014324	exon5	c.G831T	p.E277D	.	.	.
RAI14	26064	broad.mit.edu	36	5	34844484	34844484	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145522	exon7	c.G418A	p.E140K	.	.	.
RAI14	26064	broad.mit.edu	36	5	34859468	34859468	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145522	exon14	c.G1677T	p.E559D	.	.	.
RAI14	26064	broad.mit.edu	36	5	34865620	34865620	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145522	exon16	c.C2739T	p.V913V	.	.	.
RAI14	26064	broad.mit.edu	36	5	34866592	34866592	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001145522	exon17	c.C2821A	p.L941I	.	.	.
TTC23L	153657	broad.mit.edu	36	5	34898830	34898830	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_144725	exon5	c.G450A	p.T150T	.	.	.
DNAJC21	134218	broad.mit.edu	36	5	34985420	34985420	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_194283	exon10	c.G1201T	p.D401Y	.	.	.
PRLR	5618	broad.mit.edu	36	5	35104711	35104711	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000949	exon8	c.T712C	p.W238R	.	.	.
SPEF2	79925	broad.mit.edu	36	5	35690531	35690531	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024867	exon7	c.G924T	p.E308D	.	.	.
SPEF2	79925	broad.mit.edu	36	5	35843025	35843025	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024867	exon36	c.G5292A	p.K1764K	.	.	.
IL7R	3575	broad.mit.edu	36	5	35896713	35896713	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002185	exon2	c.G85T	p.D29Y	.	.	.
CAPSL	133690	broad.mit.edu	36	5	35940463	35940463	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144647	exon5	c.G568A	p.A190T	.	.	.
CAPSL	133690	broad.mit.edu	36	5	35945803	35945803	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_144647	exon4	c.G447T	p.Q149H	.	.	.
UGT3A1	133688	broad.mit.edu	36	5	35990067	35990067	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152404	exon7	c.G1566T	p.K522N	.	.	.
UGT3A1	133688	broad.mit.edu	36	5	36001690	36001690	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152404	exon4	c.C398T	p.S133F	.	.	.
UGT3A2	167127	broad.mit.edu	36	5	36073747	36073747	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001168316	exon5	c.G1102T	p.E368X	.	.	.
UGT3A2	167127	broad.mit.edu	36	5	36075441	36075441	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001168316	exon4	c.C868T	p.P290S	.	.	.
LMBRD2	92255	broad.mit.edu	36	5	36140964	36140964	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007527	exon17	c.A1990G	p.T664A	.	.	.
LMBRD2	92255	broad.mit.edu	36	5	36160118	36160118	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001007527	exon7	c.C754T	p.R252C	.	.	.
SLC1A3	6507	broad.mit.edu	36	5	36665393	36665393	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166695	exon2	c.T266G	p.M89R	.	.	.
SLC1A3	6507	broad.mit.edu	36	5	36713001	36713001	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166695	exon5	c.C818A	p.S273Y	.	.	.
SLC1A3	6507	broad.mit.edu	36	5	36716326	36716326	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166695	exon7	c.C1167T	p.F389F	.	.	.
NIPBL	25836	broad.mit.edu	36	5	36991400	36991400	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015384	exon3	c.G134A	p.R45Q	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37021032	37021032	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015384	exon10	c.G1993A	p.E665K	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37021338	37021338	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015384	exon10	c.G2299A	p.D767N	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37096816	37096816	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015384	exon45	c.A7799G	p.D2600G	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37144181	37144181	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023073	exon51	c.C9388A	p.L3130I	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37201446	37201446	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023073	exon36	c.G7485T	p.E2495D	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37202930	37202930	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023073	exon35	c.G7376A	p.R2459K	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37204690	37204690	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023073	exon34	c.G7193T	p.R2398I	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37215940	37215940	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023073	exon28	c.G5673A	p.E1891E	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37223690	37223690	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023073	exon22	c.G3823T	p.E1275X	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37237601	37237601	+	5'UTR	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023073	exon19	c.T3356C	p.V1119A	.	.	.
WDR70	55100	broad.mit.edu	36	5	37738858	37738858	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018034	exon13	c.C1328T	p.S443F	.	.	.
WDR70	55100	broad.mit.edu	36	5	37762767	37762767	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018034	exon17	c.C1740T	p.H580H	.	.	.
GDNF	2668	broad.mit.edu	36	5	37851699	37851699	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001190468	exon3	c.C498T	p.C166C	.	.	.
EGFLAM	133584	broad.mit.edu	36	5	38471075	38471075	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182798	exon11	c.C1544T	p.S515L	.	.	.
LIFR	3977	broad.mit.edu	36	5	38517617	38517617	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127671	exon20	c.C3131A	p.S1044Y	.	.	.
RICTOR	253260	broad.mit.edu	36	5	38985659	38985659	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152756	exon31	c.G4048T	p.A1350S	.	.	.
RICTOR	253260	broad.mit.edu	36	5	38986483	38986483	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152756	exon31	c.G3224A	p.R1075Q	.	.	.
RICTOR	253260	broad.mit.edu	36	5	39017762	39017762	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152756	exon8	c.G717T	p.K239N	.	.	.
DAB2	1601	broad.mit.edu	36	5	39412642	39412642	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001343	exon12	c.G2004A	p.A668A	.	.	.
DAB2	1601	broad.mit.edu	36	5	39418888	39418888	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001343	exon10	c.G930A	p.S310S	.	.	.
DAB2	1601	broad.mit.edu	36	5	39419088	39419088	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001343	exon10	c.G730A	p.D244N	.	.	.
PRKAA1	5562	broad.mit.edu	36	5	40800866	40800866	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006251	exon7	c.C1053A	p.F351L	.	.	.
CARD6	84674	broad.mit.edu	36	5	40888659	40888659	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032587	exon3	c.G1468T	p.D490Y	.	.	.
C7	730	broad.mit.edu	36	5	40997987	40997987	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000587	exon13	c.G1705T	p.E569X	.	.	.
C7	730	broad.mit.edu	36	5	41017285	41017285	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000587	exon18	c.G2385A	p.S795S	.	.	.
HEATR7B2	133558	broad.mit.edu	36	5	41048561	41048561	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173489	exon30	c.C3016A	p.L1006M	.	.	.
C6	729	broad.mit.edu	36	5	41178736	41178736	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000065	exon18	c.G2753T	p.R918I	.	.	.
C6	729	broad.mit.edu	36	5	41194999	41194999	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000065	exon12	c.C1798T	p.R600C	.	.	.
OXCT1	5019	broad.mit.edu	36	5	41886009	41886009	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000436	exon5	c.C444T	p.G148G	.	.	.
FBXO4	26272	broad.mit.edu	36	5	41962965	41962965	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_012176	exon2	c.G283T	p.D95Y	.	.	.
SEPP1	6414	broad.mit.edu	36	5	42842917	42842917	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001085486	exon4	c.C254A	p.S85Y	.	.	.
MGC42105	167359	broad.mit.edu	36	5	43312984	43312984	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153361	exon3	c.G361T	p.E121X	.	.	.
C5orf28	64417	broad.mit.edu	36	5	43489808	43489808	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022483	exon2	c.G21T	p.K7N	.	.	.
C5orf34	375444	broad.mit.edu	36	5	43541649	43541649	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198566	exon4	c.C890A	p.P297H	.	.	.
PAIP1	10605	broad.mit.edu	36	5	43565728	43565728	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_183323	exon10	c.G927T	p.E309D	.	.	.
PAIP1	10605	broad.mit.edu	36	5	43578939	43578939	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_183323	exon4	c.C322T	p.R108C	.	.	.
PAIP1	10605	broad.mit.edu	36	5	43591695	43591695	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_183323	exon2	c.T93G	p.S31R	.	.	.
NNT	23530	broad.mit.edu	36	5	43648855	43648855	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_182977	exon3	c.G240T	p.Q80H	.	.	.
NNT	23530	broad.mit.edu	36	5	43680507	43680507	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_182977	exon9	c.G1136A	p.R379Q	.	.	.
MRPS30	10884	broad.mit.edu	36	5	44847804	44847804	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016640	exon3	c.G778A	p.E260K	.	.	.
HCN1	348980	broad.mit.edu	36	5	45302954	45302954	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021072	exon7	c.C1777T	p.R593X	.	.	.
HCN1	348980	broad.mit.edu	36	5	45432376	45432376	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021072	exon4	c.C1205A	p.S402Y	.	.	.
HCN1	348980	broad.mit.edu	36	5	45681406	45681406	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_021072	exon2	c.G487T	p.G163X	.	.	.
PELO	53918	broad.mit.edu	36	5	52132255	52132255	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015946	exon2	c.G270T	p.E90D	.	.	.
ITGA1	3672	broad.mit.edu	36	5	52247062	52247062	+	Silent	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181501	exon15	c.A1869C	p.S623S	.	.	.
ITGA1	3672	broad.mit.edu	36	5	52271501	52271501	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181501	exon26	c.G3255A	p.S1085S	.	.	.
ITGA2	3673	broad.mit.edu	36	5	52401767	52401767	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002203	exon17	c.G2155T	p.E719X	.	.	.
FST	10468	broad.mit.edu	36	5	52815259	52815259	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013409	exon3	c.G446T	p.R149I	.	.	.
NDUFS4	4724	broad.mit.edu	36	5	53014774	53014774	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002495	exon5	c.C494A	p.S165Y	.	.	.
ADAMTS16	170690	broad.mit.edu	36	5	5356846	5356846	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_139056	exon20	c.G3153A	p.K1051K	.	.	.
HSPB3	8988	broad.mit.edu	36	5	53787647	53787647	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006308	exon1	c.G271T	p.E91X	.	.	.
GZMA	3001	broad.mit.edu	36	5	54439401	54439401	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006144	exon3	c.C238A	p.L80I	.	.	.
GPX8	493869	broad.mit.edu	36	5	54492631	54492631	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001008397	exon2	c.A257G	p.Y86C	.	.	.
DHX29	54505	broad.mit.edu	36	5	54594356	54594356	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019030	exon24	c.G3687A	p.G1229G	.	.	.
DHX29	54505	broad.mit.edu	36	5	54606214	54606214	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019030	exon16	c.G2675T	p.R892I	.	.	.
DHX29	54505	broad.mit.edu	36	5	54617435	54617435	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019030	exon9	c.G1078T	p.E360X	.	.	.
SKIV2L2	23517	broad.mit.edu	36	5	54719604	54719604	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015360	exon19	c.C2098A	p.L700M	.	.	.
SLC38A9	153129	broad.mit.edu	36	5	54996445	54996445	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_173514	exon8	c.C530A	p.S177X	.	.	.
DDX4	54514	broad.mit.edu	36	5	55091786	55091786	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001166533	exon4	c.A129C	p.E43D	.	.	.
KIAA0947	23379	broad.mit.edu	36	5	5515245	5515245	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015325	exon13	c.G2798T	p.R933I	.	.	.
KIAA0947	23379	broad.mit.edu	36	5	5517037	5517037	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015325	exon13	c.C4590T	p.F1530F	.	.	.
KIAA0947	23379	broad.mit.edu	36	5	5519570	5519570	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015325	exon14	c.G6016T	p.D2006Y	.	.	.
IL31RA	133396	broad.mit.edu	36	5	55214648	55214648	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139017	exon5	c.G474T	p.K158N	.	.	.
KIAA0947	23379	broad.mit.edu	36	5	5522000	5522000	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015325	exon15	c.C6121A	p.L2041I	.	.	.
IL31RA	133396	broad.mit.edu	36	5	55231684	55231684	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139017	exon8	c.G1036A	p.A346T	.	.	.
KIAA0947	23379	broad.mit.edu	36	5	5539894	5539894	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015325	exon18	c.C6581T	p.S2194L	.	.	.
ANKRD55	79722	broad.mit.edu	36	5	55443226	55443226	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024669	exon10	c.G1106A	p.R369Q	.	.	.
MAP3K1	4214	broad.mit.edu	36	5	56204288	56204288	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005921	exon8	c.G1487T	p.R496I	.	.	.
MAP3K1	4214	broad.mit.edu	36	5	56212750	56212750	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005921	exon13	c.C2263A	p.L755I	.	.	.
C5orf35	133383	broad.mit.edu	36	5	56243000	56243000	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171990	exon2	c.C346A	p.L116I	.	.	.
MIER3	166968	broad.mit.edu	36	5	56264971	56264971	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152622	exon8	c.G607A	p.E203K	.	.	.
ACTBL2	345651	broad.mit.edu	36	5	56814217	56814217	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001017992	exon1	c.C75T	p.D25D	.	.	.
PLK2	10769	broad.mit.edu	36	5	57786211	57786211	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006622	exon14	c.C2014T	p.R672X	.	.	.
PLK2	10769	broad.mit.edu	36	5	57787658	57787658	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006622	exon10	c.C1336T	p.R446W	.	.	.
PLK2	10769	broad.mit.edu	36	5	57788596	57788596	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006622	exon8	c.C1089A	p.F363L	.	.	.
GAPT	202309	broad.mit.edu	36	5	57826433	57826433	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_152687	exon3	c.G313T	p.G105X	.	.	.
RAB3C	115827	broad.mit.edu	36	5	57949398	57949398	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138453	exon2	c.G196A	p.D66N	.	.	.
RAB3C	115827	broad.mit.edu	36	5	58182807	58182807	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_138453	exon5	c.C556T	p.R186C	.	.	.
PDE4D	5144	broad.mit.edu	36	5	59099911	59099911	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001197218	exon1	c.G182T	p.R61I	.	.	.
ERCC8	1161	broad.mit.edu	36	5	60236385	60236385	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000082	exon5	c.T472C	p.L158L	.	.	.
KIF2A	3796	broad.mit.edu	36	5	61689312	61689312	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001098511	exon8	c.G692A	p.R231Q	.	.	.
IPO11	51194	broad.mit.edu	36	5	61817032	61817032	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001134779	exon12	c.A1324G	p.K442E	.	.	.
RNF180	285671	broad.mit.edu	36	5	63545188	63545188	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_178532	exon4	c.T279C	p.R93R	.	.	.
SREK1IP1	285672	broad.mit.edu	36	5	64055979	64055979	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_173829	exon5	c.C456A	p.F152L	.	.	.
ADAMTS6	11174	broad.mit.edu	36	5	64502263	64502263	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_197941	exon24	c.C3181A	p.R1061R	.	.	.
ADAMTS6	11174	broad.mit.edu	36	5	64556534	64556534	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_197941	exon17	c.T2164C	p.F722L	.	.	.
ADAMTS6	11174	broad.mit.edu	36	5	64661018	64661018	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_197941	exon9	c.T1166C	p.I389T	.	.	.
PPWD1	23398	broad.mit.edu	36	5	64895056	64895056	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015342	exon1	c.C163T	p.P55S	.	.	.
TRIM23	373	broad.mit.edu	36	5	64923504	64923504	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033228	exon11	c.G1573T	p.E525X	.	.	.
TRIM23	373	broad.mit.edu	36	5	64928756	64928756	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033228	exon8	c.G1187A	p.R396Q	.	.	.
TRIM23	373	broad.mit.edu	36	5	64941004	64941004	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_033228	exon6	c.G866A	p.R289Q	.	.	.
TRIM23	373	broad.mit.edu	36	5	64945771	64945771	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_033228	exon3	c.T276A	p.N92K	.	.	.
C5orf44	80006	broad.mit.edu	36	5	64996149	64996149	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024941	exon13	c.C1209T	p.I403I	.	.	.
SGTB	54557	broad.mit.edu	36	5	65017021	65017021	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019072	exon6	c.G409T	p.D137Y	.	.	.
NLN	57486	broad.mit.edu	36	5	65090408	65090408	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020726	exon2	c.A300G	p.I100M	.	.	.
NLN	57486	broad.mit.edu	36	5	65141683	65141683	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020726	exon11	c.C1778T	p.S593L	.	.	.
ERBB2IP	55914	broad.mit.edu	36	5	65346284	65346284	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018695	exon7	c.G508A	p.E170K	.	.	.
SREK1	140890	broad.mit.edu	36	5	65502363	65502363	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_139168	exon10	c.A968C	p.K323T	.	.	.
MAST4	375449	broad.mit.edu	36	5	66385993	66385993	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015183	exon4	c.G113A	p.R38Q	.	.	.
MAST4	375449	broad.mit.edu	36	5	66432112	66432112	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015183	exon7	c.G439A	p.E147K	.	.	.
MAST4	375449	broad.mit.edu	36	5	66481115	66481115	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015183	exon23	c.C2670T	p.I890I	.	.	.
MAST4	375449	broad.mit.edu	36	5	66496813	66496813	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015183	exon28	c.C5483A	p.S1828Y	.	.	.
CD180	4064	broad.mit.edu	36	5	66514512	66514512	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005582	exon3	c.C1915T	p.L639L	.	.	.
CD180	4064	broad.mit.edu	36	5	66515175	66515175	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005582	exon3	c.G1252T	p.E418X	.	.	.
CD180	4064	broad.mit.edu	36	5	66515428	66515428	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005582	exon3	c.C999T	p.F333F	.	.	.
PIK3R1	5295	broad.mit.edu	36	5	67625365	67625365	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181523	exon10	c.G1372T	p.E458X	.	.	.
PIK3R1	5295	broad.mit.edu	36	5	67626222	67626222	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_181523	exon11	c.G1528T	p.E510X	.	.	.
PIK3R1	5295	broad.mit.edu	36	5	67627026	67627026	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_181523	exon13	c.C1768T	p.R590W	.	.	.
PAPD7	11044	broad.mit.edu	36	5	6790711	6790711	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171805	exon2	c.G55A	p.E19K	.	.	.
PAPD7	11044	broad.mit.edu	36	5	6795698	6795698	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171805	exon5	c.G354T	p.K118N	.	.	.
PAPD7	11044	broad.mit.edu	36	5	6799444	6799444	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171805	exon7	c.G613T	p.E205X	.	.	.
PAPD7	11044	broad.mit.edu	36	5	6799517	6799517	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001171805	exon7	c.G686T	p.C229F	.	.	.
SLC30A5	64924	broad.mit.edu	36	5	68432450	68432450	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022902	exon2	c.C144T	p.F48F	.	.	.
SLC30A5	64924	broad.mit.edu	36	5	68448098	68448098	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022902	exon10	c.G1194A	p.S398S	.	.	.
CENPH	64946	broad.mit.edu	36	5	68526273	68526273	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022909	exon3	c.T234T	p.D78D	.	.	.
CCDC125	202243	broad.mit.edu	36	5	68638441	68638441	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_176816	exon5	c.A576C	p.R192S	.	.	.
RAD17	5884	broad.mit.edu	36	5	68745768	68745768	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_133341	exon16	c.C1648A	p.Q550K	.	.	.
CEP72	55722	broad.mit.edu	36	5	697452	697452	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018140	exon10	c.G1578T	p.E526D	.	.	.
BDP1	55814	broad.mit.edu	36	5	70787532	70787532	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018429	exon1	c.T72G	p.A24A	.	.	.
BDP1	55814	broad.mit.edu	36	5	70790281	70790281	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018429	exon2	c.T332C	p.V111A	.	.	.
BDP1	55814	broad.mit.edu	36	5	70795680	70795680	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018429	exon4	c.G639A	p.S213S	.	.	.
BDP1	55814	broad.mit.edu	36	5	70818090	70818090	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018429	exon9	c.G1093A	p.D365N	.	.	.
BDP1	55814	broad.mit.edu	36	5	70822690	70822690	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018429	exon11	c.G1616T	p.R539I	.	.	.
BDP1	55814	broad.mit.edu	36	5	70855664	70855664	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018429	exon25	c.C5530T	p.R1844C	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71527528	71527528	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005909	exon5	c.G2590A	p.E864K	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71528202	71528202	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005909	exon5	c.G3264T	p.E1088D	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71530781	71530781	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005909	exon5	c.G5843A	p.R1948Q	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71531076	71531076	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005909	exon5	c.G6138T	p.E2046D	.	.	.
FCHO2	115548	broad.mit.edu	36	5	72300147	72300147	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001146032	exon2	c.G100T	p.E34X	.	.	.
ANKRA2	57763	broad.mit.edu	36	5	72894287	72894287	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_023039	exon2	c.G176A	p.R59Q	.	.	.
RGNEF	64283	broad.mit.edu	36	5	73164025	73164025	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001177693	exon10	c.T1131C	p.C377C	.	.	.
RGNEF	64283	broad.mit.edu	36	5	73224826	73224826	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001177693	exon28	c.G3615T	p.K1205N	.	.	.
HEXB	3074	broad.mit.edu	36	5	74017073	74017073	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000521	exon1	c.T232G	p.Y78D	.	.	.
GFM2	84340	broad.mit.edu	36	5	74057252	74057252	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032380	exon19	c.T1997G	p.I666S	.	.	.
GFM2	84340	broad.mit.edu	36	5	74061944	74061944	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032380	exon17	c.G1623T	p.E541D	.	.	.
FAM169A	26049	broad.mit.edu	36	5	74173202	74173202	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_015566	exon2	c.C56T	p.S19F	.	.	.
GCNT4	51301	broad.mit.edu	36	5	74361123	74361123	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016591	exon1	c.C496T	p.R166C	.	.	.
GCNT4	51301	broad.mit.edu	36	5	74361558	74361558	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_016591	exon1	c.T61G	p.L21V	.	.	.
HMGCR	3156	broad.mit.edu	36	5	74691627	74691627	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000859	exon19	c.G2519A	p.R840Q	.	.	.
POLK	51426	broad.mit.edu	36	5	74928119	74928119	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_016218	exon13	c.T1845C	p.N615N	.	.	.
SV2C	22987	broad.mit.edu	36	5	75463853	75463853	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_014979	exon2	c.C522T	p.F174F	.	.	.
IQGAP2	10788	broad.mit.edu	36	5	75793206	75793206	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_006633	exon2	c.G102T	p.Q34H	.	.	.
IQGAP2	10788	broad.mit.edu	36	5	76000370	76000370	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006633	exon23	c.C2788T	p.R930X	.	.	.
F2RL1	2150	broad.mit.edu	36	5	76164997	76164997	+	Missense_Mutation	SNP	G	A	A	rs2243062	by-cluster,by-frequency,by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005242	exon2	c.G809A	p.R270Q	.	.	.
AGGF1	55109	broad.mit.edu	36	5	76367310	76367310	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018046	exon3	c.G502A	p.A168T	.	.	.
PDE8B	8622	broad.mit.edu	36	5	76660582	76660582	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003719	exon4	c.G594A	p.S198S	.	.	.
WDR41	55255	broad.mit.edu	36	5	76769910	76769910	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018268	exon10	c.C915T	p.Y305Y	.	.	.
OTP	23440	broad.mit.edu	36	5	76968531	76968531	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032109	exon2	c.C318T	p.R106R	.	.	.
ADCY2	108	broad.mit.edu	36	5	7751376	7751376	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_020546	exon7	c.G998T	p.R333I	.	.	.
AP3B1	8546	broad.mit.edu	36	5	77547655	77547655	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003664	exon7	c.T766C	p.F256L	.	.	.
AP3B1	8546	broad.mit.edu	36	5	77558964	77558964	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003664	exon5	c.A524C	p.Q175P	.	.	.
LHFPL2	10184	broad.mit.edu	36	5	77841511	77841511	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005779	exon4	c.C282T	p.S94S	.	.	.
DMGDH	29958	broad.mit.edu	36	5	78362433	78362433	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_013391	exon10	c.C1662A	p.L554L	.	.	.
BHMT2	23743	broad.mit.edu	36	5	78412298	78412298	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017614	exon4	c.C291T	p.L97L	.	.	.
BHMT2	23743	broad.mit.edu	36	5	78414508	78414508	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001178005	exon4	c.G379T	p.E127X	.	.	.
BHMT	635	broad.mit.edu	36	5	78451966	78451966	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001713	exon4	c.G323A	p.R108Q	.	.	.
BHMT	635	broad.mit.edu	36	5	78457631	78457631	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001713	exon6	c.C632A	p.S211Y	.	.	.
BHMT	635	broad.mit.edu	36	5	78459437	78459437	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001713	exon7	c.C912A	p.P304P	.	.	.
JMY	133746	broad.mit.edu	36	5	78647690	78647690	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152405	exon10	c.A2771C	p.N924T	.	.	.
HOMER1	9456	broad.mit.edu	36	5	78778703	78778703	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004272	exon4	c.T316G	p.F106V	.	.	.
C5orf49	134121	broad.mit.edu	36	5	7888566	7888566	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001089584	exon2	c.G193T	p.D65Y	.	.	.
PAPD4	167153	broad.mit.edu	36	5	78954841	78954841	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114394	exon4	c.G238A	p.D80N	.	.	.
PAPD4	167153	broad.mit.edu	36	5	78980655	78980655	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114394	exon10	c.C913T	p.R305C	.	.	.
PAPD4	167153	broad.mit.edu	36	5	79016803	79016803	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001114394	exon15	c.G1406T	p.R469I	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79061911	79061911	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153610	exon2	c.G1567T	p.D523Y	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79065711	79065711	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153610	exon2	c.G5367A	p.K1789K	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79066860	79066860	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153610	exon2	c.G6516T	p.K2172N	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79068712	79068712	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153610	exon2	c.G8368A	p.E2790K	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79069584	79069584	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153610	exon2	c.G9240T	p.E3080D	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79070803	79070803	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153610	exon2	c.G10459T	p.E3487X	.	.	.
FASTKD3	79072	broad.mit.edu	36	5	7919971	7919971	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024091	exon2	c.C1226T	p.S409F	.	.	.
FASTKD3	79072	broad.mit.edu	36	5	7920316	7920316	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_024091	exon2	c.A881C	p.K294T	.	.	.
SPZ1	84654	broad.mit.edu	36	5	79652942	79652942	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032567	exon1	c.G1152T	p.K384N	.	.	.
ZFYVE16	9765	broad.mit.edu	36	5	79768868	79768868	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001105251	exon4	c.G608A	p.G203E	.	.	.
ZFYVE16	9765	broad.mit.edu	36	5	79804429	79804429	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001105251	exon16	c.T4118G	p.V1373G	.	.	.
FAM151B	167555	broad.mit.edu	36	5	79851341	79851341	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_205548	exon4	c.A391G	p.N131D	.	.	.
ANKRD34B	340120	broad.mit.edu	36	5	79890984	79890984	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001004441	exon5	c.C611T	p.T204M	.	.	.
MSH3	4437	broad.mit.edu	36	5	80001866	80001866	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002439	exon4	c.C774A	p.F258L	.	.	.
MSH3	4437	broad.mit.edu	36	5	80057122	80057122	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002439	exon9	c.G1435T	p.D479Y	.	.	.
RASGRF2	5924	broad.mit.edu	36	5	80417475	80417475	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006909	exon8	c.G1260T	p.E420D	.	.	.
CKMT2	1160	broad.mit.edu	36	5	80586586	80586586	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001825	exon6	c.G466A	p.D156N	.	.	.
CKMT2	1160	broad.mit.edu	36	5	80586787	80586787	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001825	exon6	c.G667A	p.D223N	.	.	.
CKMT2	1160	broad.mit.edu	36	5	80590701	80590701	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001825	exon9	c.C886T	p.R296W	.	.	.
ZCCHC9	84240	broad.mit.edu	36	5	80644195	80644195	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001131036	exon6	c.G774A	p.P258P	.	.	.
ACOT12	134526	broad.mit.edu	36	5	80662401	80662401	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130767	exon14	c.C1506A	p.S502R	.	.	.
ACOT12	134526	broad.mit.edu	36	5	80691535	80691535	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130767	exon5	c.C439T	p.R147X	.	.	.
ACOT12	134526	broad.mit.edu	36	5	80695440	80695440	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_130767	exon4	c.G283T	p.D95Y	.	.	.
VCAN	1462	broad.mit.edu	36	5	82815159	82815159	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164097	exon2	c.T66C	p.H22H	.	.	.
VCAN	1462	broad.mit.edu	36	5	82821831	82821831	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164097	exon3	c.G229T	p.D77Y	.	.	.
VCAN	1462	broad.mit.edu	36	5	82852041	82852041	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164098	exon7	c.C2160T	p.V720V	.	.	.
VCAN	1462	broad.mit.edu	36	5	82853389	82853389	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164098	exon7	c.A3508G	p.T1170A	.	.	.
VCAN	1462	broad.mit.edu	36	5	82868626	82868626	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164097	exon7	c.G1087T	p.E363X	.	.	.
VCAN	1462	broad.mit.edu	36	5	82870295	82870295	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164097	exon7	c.T2756G	p.I919R	.	.	.
VCAN	1462	broad.mit.edu	36	5	82872004	82872004	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164097	exon7	c.G4465A	p.A1489T	.	.	.
VCAN	1462	broad.mit.edu	36	5	82872817	82872817	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164097	exon7	c.A5278G	p.T1760A	.	.	.
VCAN	1462	broad.mit.edu	36	5	82873566	82873566	+	Silent	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164097	exon7	c.A6027G	p.P2009P	.	.	.
VCAN	1462	broad.mit.edu	36	5	82884984	82884984	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001164097	exon10	c.G6578A	p.C2193Y	.	.	.
VCAN	1462	broad.mit.edu	36	5	82885097	82885097	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001164097	exon10	c.C6691T	p.R2231C	.	.	.
RASA1	5921	broad.mit.edu	36	5	86664865	86664865	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002890	exon4	c.G854A	p.R285Q	.	.	.
RASA1	5921	broad.mit.edu	36	5	86705784	86705784	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002890	exon14	c.A1825C	p.K609Q	.	.	.
RASA1	5921	broad.mit.edu	36	5	86716898	86716898	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002890	exon22	c.G2783T	p.R928I	.	.	.
TMEM161B	153396	broad.mit.edu	36	5	87538746	87538746	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153354	exon6	c.C454A	p.L152I	.	.	.
MEF2C	4208	broad.mit.edu	36	5	88092596	88092596	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001193347	exon6	c.G421A	p.E141K	.	.	.
LYSMD3	116068	broad.mit.edu	36	5	89850868	89850868	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_198273	exon3	c.G445T	p.D149Y	.	.	.
GPR98	84059	broad.mit.edu	36	5	89950682	89950682	+	Silent	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032119	exon4	c.T381C	p.L127L	.	.	.
GPR98	84059	broad.mit.edu	36	5	89959157	89959157	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032119	exon7	c.A1046G	p.D349G	.	.	.
GPR98	84059	broad.mit.edu	36	5	89975549	89975549	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032119	exon14	c.C2727A	p.I909I	.	.	.
GPR98	84059	broad.mit.edu	36	5	89985354	89985354	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032119	exon20	c.T4207G	p.L1403V	.	.	.
GPR98	84059	broad.mit.edu	36	5	90007748	90007748	+	Silent	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032119	exon25	c.T5409G	p.S1803S	.	.	.
GPR98	84059	broad.mit.edu	36	5	90025783	90025783	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032119	exon33	c.A7454G	p.N2485S	.	.	.
GPR98	84059	broad.mit.edu	36	5	90088561	90088561	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032119	exon57	c.G11767T	p.E3923X	.	.	.
GPR98	84059	broad.mit.edu	36	5	90108046	90108046	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032119	exon61	c.C12424T	p.R4142W	.	.	.
GPR98	84059	broad.mit.edu	36	5	90114747	90114747	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032119	exon66	c.A13282C	p.T4428P	.	.	.
GPR98	84059	broad.mit.edu	36	5	90142101	90142101	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032119	exon74	c.T15268A	p.F5090I	.	.	.
GPR98	84059	broad.mit.edu	36	5	90185093	90185093	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_032119	exon80	c.C17441T	p.T5814I	.	.	.
ARRDC3	57561	broad.mit.edu	36	5	90705286	90705286	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020801	exon7	c.C1159T	p.R387X	.	.	.
SEMA5A	9037	broad.mit.edu	36	5	9207665	9207665	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003966	exon12	c.C1416T	p.F472F	.	.	.
SEMA5A	9037	broad.mit.edu	36	5	9290971	9290971	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_003966	exon6	c.A302C	p.K101T	.	.	.
NR2F1	7025	broad.mit.edu	36	5	92949819	92949819	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005654	exon2	c.T904G	p.F302V	.	.	.
POU5F2	134187	broad.mit.edu	36	5	93102966	93102966	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153216	exon1	c.C60T	p.G20G	.	.	.
FAM172A	83989	broad.mit.edu	36	5	93436156	93436156	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032042	exon2	c.A57C	p.Q19H	.	.	.
MCTP1	79772	broad.mit.edu	36	5	94072337	94072337	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002796	exon21	c.C2109A	p.L703L	.	.	.
BRD9	65980	broad.mit.edu	36	5	942244	942244	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_023924	exon5	c.G498A	p.T166T	.	.	.
MCTP1	79772	broad.mit.edu	36	5	94270743	94270743	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001002796	exon10	c.G958T	p.D320Y	.	.	.
MCTP1	79772	broad.mit.edu	36	5	94378890	94378890	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001002796	exon2	c.G112T	p.G38X	.	.	.
FAM81B	153643	broad.mit.edu	36	5	94752881	94752881	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152548	exon1	c.C32T	p.S11F	.	.	.
FAM81B	153643	broad.mit.edu	36	5	94775561	94775561	+	Nonsense_Mutation	SNP	C	T	T	rs10042271	by-hapmap	TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152548	exon4	c.C448T	p.R150X	.	.	.
FAM81B	153643	broad.mit.edu	36	5	94808049	94808049	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_152548	exon8	c.C921T	p.Y307Y	.	.	.
ARSK	153642	broad.mit.edu	36	5	94944639	94944639	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198150	exon4	c.C680A	p.S227Y	.	.	.
ARSK	153642	broad.mit.edu	36	5	94953056	94953056	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198150	exon6	c.C1067A	p.S356Y	.	.	.
ARSK	153642	broad.mit.edu	36	5	94962347	94962347	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198150	exon7	c.C1137A	p.Y379X	.	.	.
RFESD	317671	broad.mit.edu	36	5	95017759	95017759	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_001131065	exon6	c.G623T	p.S208I	.	.	.
RHOBTB3	22836	broad.mit.edu	36	5	95117135	95117135	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014899	exon6	c.C962A	p.S321Y	.	.	.
RHOBTB3	22836	broad.mit.edu	36	5	95124997	95124997	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014899	exon7	c.G1078T	p.D360Y	.	.	.
RHOBTB3	22836	broad.mit.edu	36	5	95154558	95154558	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_014899	exon12	c.C1760T	p.S587L	.	.	.
GLRX	2745	broad.mit.edu	36	5	95183943	95183943	+	Nonsense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002064	exon1	c.T180G	p.Y60X	.	.	.
ELL2	22936	broad.mit.edu	36	5	95252641	95252641	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_012081	exon10	c.G1683T	p.R561S	.	.	.
PCSK1	5122	broad.mit.edu	36	5	95761559	95761559	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001177875	exon10	c.G1143T	p.K381N	.	.	.
ERAP1	51752	broad.mit.edu	36	5	96144539	96144539	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040458	exon15	c.A2257C	p.K753Q	.	.	.
ERAP1	51752	broad.mit.edu	36	5	96162405	96162405	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001040458	exon3	c.C579A	p.C193X	.	.	.
ERAP2	64167	broad.mit.edu	36	5	96253866	96253866	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022350	exon6	c.G1078A	p.D360N	.	.	.
ERAP2	64167	broad.mit.edu	36	5	96258269	96258269	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_022350	exon9	c.G1449T	p.K483N	.	.	.
ERAP2	64167	broad.mit.edu	36	5	96274917	96274917	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_022350	exon17	c.A2657C	p.K886T	.	.	.
LNPEP	4012	broad.mit.edu	36	5	96340648	96340648	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005575	exon2	c.G70T	p.E24X	.	.	.
LNPEP	4012	broad.mit.edu	36	5	96386045	96386045	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005575	exon15	c.T2626A	p.F876I	.	.	.
LIX1	167410	broad.mit.edu	36	5	96456450	96456450	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_153234	exon6	c.C607T	p.R203C	.	.	.
LIX1	167410	broad.mit.edu	36	5	96458293	96458293	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_153234	exon5	c.C538T	p.R180C	.	.	.
TAS2R1	50834	broad.mit.edu	36	5	9682254	9682254	+	Silent	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_019599	exon1	c.C891T	p.C297C	.	.	.
CHD1	1105	broad.mit.edu	36	5	98264585	98264585	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001270	exon6	c.G689T	p.R230I	.	.	.
NDUFA5	4698	broad.mit.edu	36	7	122972893	122972893	+	Intron	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
COPG2	26958	broad.mit.edu	36	7	129933749	129933749	+	3'UTR	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ACTR3B	57180	broad.mit.edu	36	7	152153142	152153142	+	Splice_Site	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	.	.	.	.	.	.	.
NSUN5P2	260294	broad.mit.edu	36	7	72057493	72057493	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
RFC2	5982	broad.mit.edu	36	7	73287915	73287915	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
NSUN5P1	155400	broad.mit.edu	36	7	74883293	74883293	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
LOC388796	388796	broad.mit.edu	36	20	36496046	36496046	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
SNORD113-5	767565	broad.mit.edu	36	14	100472664	100472664	+	5'Flank	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ADAM6	8755	broad.mit.edu	36	14	105804409	105804409	+	RNA	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ADAM6	8755	broad.mit.edu	36	14	105948744	105948744	+	RNA	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ADAM6	8755	broad.mit.edu	36	14	106065315	106065315	+	Intron	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ADAM6	8755	broad.mit.edu	36	14	106149489	106149489	+	RNA	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ADAM6	8755	broad.mit.edu	36	14	106154576	106154576	+	RNA	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ADAM6	8755	broad.mit.edu	36	14	106166237	106166237	+	RNA	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ADAM6	8755	broad.mit.edu	36	14	106250005	106250005	+	RNA	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
MIR208A	406990	broad.mit.edu	36	14	22927665	22927665	+	RNA	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
PSMA6	5687	broad.mit.edu	36	14	34853310	34853310	+	Intron	SNP	T	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
TIMM9	26520	broad.mit.edu	36	14	57948420	57948420	+	5'UTR	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
TGFB3	7043	broad.mit.edu	36	14	75517001	75517001	+	5'UTR	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
SERPINA13	388007	broad.mit.edu	36	14	94179608	94179608	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
GSC	145258	broad.mit.edu	36	14	94304575	94304575	+	3'UTR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
LGALS2	3957	broad.mit.edu	36	22	36296697	36296697	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
SERHL	94009	broad.mit.edu	36	22	41234998	41234998	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ZNF833P	401898	broad.mit.edu	36	19	11657201	11657201	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
MAMSTR	284358	broad.mit.edu	36	19	53908851	53908851	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
RPL13A	23521	broad.mit.edu	36	19	54686273	54686273	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
DPRX	503834	broad.mit.edu	36	19	58829589	58829589	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
GALP	85569	broad.mit.edu	36	19	61380288	61380288	+	5'UTR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
DUXA	503835	broad.mit.edu	36	19	62358553	62358553	+	Splice_Site	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ZNF706	51123	broad.mit.edu	36	8	102281502	102281502	+	Splice_Site	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	.	.	.	.	.	.	.
PVT1	5820	broad.mit.edu	36	8	129130643	129130643	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
VPS37A	137492	broad.mit.edu	36	8	17178271	17178271	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
GTF2E2	2961	broad.mit.edu	36	8	30591660	30591660	+	Intron	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
FBXO25	26260	broad.mit.edu	36	8	372885	372885	+	Splice_Site	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
PRKY	5616	broad.mit.edu	36	Y	7254115	7254115	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	.	.	.	.	.	.	.
CTSK	1513	broad.mit.edu	36	1	149045915	149045915	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
FCGR2B	2213	broad.mit.edu	36	1	159909385	159909385	+	Intron	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
C1orf105	92346	broad.mit.edu	36	1	170697935	170697935	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
GAS5	60674	broad.mit.edu	36	1	172102063	172102063	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
RGS8	85397	broad.mit.edu	36	1	180901795	180901795	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
H3F3A	3020	broad.mit.edu	36	1	224318810	224318810	+	Intron	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
BTF3L4	91408	broad.mit.edu	36	1	52303080	52303080	+	Intron	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
SPATA1	64173	broad.mit.edu	36	1	84764287	84764287	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
CLCA3P	9629	broad.mit.edu	36	1	86877117	86877117	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
DR1	1810	broad.mit.edu	36	1	93592047	93592047	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
C1orf200	644997	broad.mit.edu	36	1	9636962	9636962	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
TTC9C	283237	broad.mit.edu	36	11	62262442	62262442	+	3'UTR	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ATL3	25923	broad.mit.edu	36	11	63160383	63160383	+	Splice_Site	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ATL3	25923	broad.mit.edu	36	11	63170550	63170550	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ATL3	25923	broad.mit.edu	36	11	63183077	63183077	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
MALAT1	378938	broad.mit.edu	36	11	65024143	65024143	+	RNA	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
C11orf67	28971	broad.mit.edu	36	11	77261010	77261010	+	Intron	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
STL	7955	broad.mit.edu	36	6	125273271	125273271	+	RNA	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
STL	7955	broad.mit.edu	36	6	125273676	125273676	+	RNA	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
STL	7955	broad.mit.edu	36	6	125275301	125275301	+	RNA	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
SLC22A2	6582	broad.mit.edu	36	6	160590416	160590416	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
BTN2A3	54718	broad.mit.edu	36	6	26534709	26534709	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	.	.	.	.	.	.	.
DOM3Z	1797	broad.mit.edu	36	6	32046590	32046590	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
CCDC144B	284047	broad.mit.edu	36	17	18427536	18427536	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
CCDC144B	284047	broad.mit.edu	36	17	18469438	18469438	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
FAM27L	284123	broad.mit.edu	36	17	21749699	21749699	+	Silent	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
OR3A4	390756	broad.mit.edu	36	17	3160661	3160661	+	Missense_Mutation	SNP	G	A	A	rs9903671	by-cluster,by-frequency,by-2hit-2allele,by-hapmap,by-1000genomes	TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
OR3A4	390756	broad.mit.edu	36	17	3161275	3161275	+	Silent	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
GDPD1	284161	broad.mit.edu	36	17	54677545	54677545	+	Intron	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
RRN3	54700	broad.mit.edu	36	16	15081460	15081460	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
EIF3CL	728689	broad.mit.edu	36	16	28619253	28619253	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
PRSS53	339105	broad.mit.edu	36	16	31006620	31006620	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ZNF271	10778	broad.mit.edu	36	18	31141839	31141839	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
MYL12B	103910	broad.mit.edu	36	18	3263084	3263084	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
GCET2	257144	broad.mit.edu	36	3	113326792	113326792	+	Splice_Site	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	.	.	.	.	.	.	.
SEC22A	26984	broad.mit.edu	36	3	124426842	124426842	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ALG1L	200810	broad.mit.edu	36	3	127132167	127132167	+	Intron	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
C3orf79	152118	broad.mit.edu	36	3	154702877	154702877	+	Intron	SNP	A	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
NPRL2	10641	broad.mit.edu	36	3	50362361	50362361	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
WDR82	80335	broad.mit.edu	36	3	52269569	52269569	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
SYNPR	132204	broad.mit.edu	36	3	63441538	63441538	+	Intron	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ARL6	84100	broad.mit.edu	36	3	98981684	98981684	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
CRYBG3	131544	broad.mit.edu	36	3	99078714	99078714	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
CRYBG3	131544	broad.mit.edu	36	3	99138335	99138335	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
PRB1	5542	broad.mit.edu	36	12	11398756	11398756	+	Splice_Site	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
DENR	8562	broad.mit.edu	36	12	121819281	121819281	+	Splice_Site	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
MGP	4256	broad.mit.edu	36	12	14928407	14928407	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
C12orf67	144360	broad.mit.edu	36	12	24628165	24628165	+	Silent	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
CAPS2	84698	broad.mit.edu	36	12	73979025	73979025	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
NECAP1	25977	broad.mit.edu	36	12	8134047	8134047	+	Intron	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
CLLU1OS	574016	broad.mit.edu	36	12	91339085	91339085	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
SNORD116-4	100033416	broad.mit.edu	36	15	22884089	22884089	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
SNORD116-4	100033416	broad.mit.edu	36	15	22885074	22885074	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
SNORD116-4	100033416	broad.mit.edu	36	15	22893979	22893979	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
SNORD115-26	100033802	broad.mit.edu	36	15	23028640	23028640	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
SNORD115-40	100033814	broad.mit.edu	36	15	23037989	23037989	+	5'Flank	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
C15orf63	25764	broad.mit.edu	36	15	41881000	41881000	+	Intron	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
SNRPA1	6627	broad.mit.edu	36	15	99644029	99644029	+	Intron	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
EIF4E	1977	broad.mit.edu	36	4	100021323	100021323	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
EIF4E	1977	broad.mit.edu	36	4	100028137	100028137	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
TMEM155	132332	broad.mit.edu	36	4	122900898	122900898	+	3'UTR	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
SSX1	6756	broad.mit.edu	36	X	48008307	48008307	+	Intron	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ASB12	142689	broad.mit.edu	36	X	63362229	63362229	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
TSIX	9383	broad.mit.edu	36	X	72957480	72957480	+	RNA	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
TSIX	9383	broad.mit.edu	36	X	72958272	72958272	+	RNA	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
TSIX	9383	broad.mit.edu	36	X	72959576	72959576	+	RNA	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
XIST	7503	broad.mit.edu	36	X	72979011	72979011	+	RNA	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
XIST	7503	broad.mit.edu	36	X	72987857	72987857	+	RNA	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
C2orf27A	29798	broad.mit.edu	36	2	132225591	132225591	+	5'UTR	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
HOXD8	3234	broad.mit.edu	36	2	176704279	176704279	+	Intron	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
C2orf47	79568	broad.mit.edu	36	2	200532313	200532313	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
EEF1B2	1933	broad.mit.edu	36	2	206735457	206735457	+	Splice_Site	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
C2orf52	151477	broad.mit.edu	36	2	232082077	232082077	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ATL2	64225	broad.mit.edu	36	2	38393890	38393890	+	Splice_Site	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
CRIPT	9419	broad.mit.edu	36	2	46704794	46704794	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
GPR107	57720	broad.mit.edu	36	9	131937229	131937229	+	3'UTR	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
MTAP	4507	broad.mit.edu	36	9	22019467	22019467	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
ENHO	375704	broad.mit.edu	36	9	34511451	34511451	+	3'UTR	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
AKR1CL1	340811	broad.mit.edu	36	10	5194847	5194847	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	.	.	.	.	.	.	.
UBE2D2	7322	broad.mit.edu	36	5	138974624	138974624	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
C5orf46	389336	broad.mit.edu	36	5	147261373	147261373	+	Intron	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
NUDCD2	134492	broad.mit.edu	36	5	162813641	162813641	+	Intron	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
FAM153C	653316	broad.mit.edu	36	5	177398986	177398986	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
TMEM167A	153339	broad.mit.edu	36	5	82395818	82395818	+	Intron	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
FAM174A	345757	broad.mit.edu	36	5	99925646	99925646	+	Intron	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	.	.	.	.	.	.	.
