Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
REM1	28954	hgsc.bcm.edu	36	20	29533782	29533783	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014012	exon4	c.455_456insG	p.Q152fs	REM1,pancreas,NS,Substitution - Missense,-1	.	.
C20orf85	128602	hgsc.bcm.edu	36	20	56169132	56169133	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178456	exon4	c.262_263insC	p.S88fs	.	.	.
EPN2	22905	hgsc.bcm.edu	36	17	19156037	19156038	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014964	exon6	c.959_960insA	p.P320fs	.	.	.
CA5A	763	hgsc.bcm.edu	36	16	86479301	86479302	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001739	exon7	c.853_854insT	p.Q285fs	.	.	.
FBXO40	51725	hgsc.bcm.edu	36	3	122828258	122828259	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016298	exon4	c.1941_1942insA	p.S647fs	.	.	.
TFR2	7036	hgsc.bcm.edu	36	7	100063484	100063484	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003227	exon13	c.T1587C	p.I529I	.	.	.
PUS7	54517	hgsc.bcm.edu	36	7	104885589	104885589	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019042	exon16	c.A1870G	p.K624E	.	.	.
LRRN3	54674	hgsc.bcm.edu	36	7	110550265	110550265	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018334	exon2	c.G201A	p.L67L	.	.	.
LRRN3	54674	hgsc.bcm.edu	36	7	110551527	110551527	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018334	exon2	c.C1463T	p.P488L	.	.	.
SPAM1	6677	hgsc.bcm.edu	36	7	123381773	123381773	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001174044	exon3	c.C913A	p.R305S	.	.	.
FSCN3	29999	hgsc.bcm.edu	36	7	127022959	127022959	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020369	exon2	c.C507T	p.D169D	.	.	.
ATP6V0A4	50617	hgsc.bcm.edu	36	7	138044926	138044926	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130840	exon20	c.C2412T	p.H804H	.	.	.
VIPR2	7434	hgsc.bcm.edu	36	7	158589214	158589214	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003382	exon4	c.A352G	p.S118G	.	.	.
SP4	6671	hgsc.bcm.edu	36	7	21436289	21436289	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003112	exon3	c.T981C	p.T327T	.	.	.
CARD11	84433	hgsc.bcm.edu	36	7	2940735	2940735	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032415	exon10	c.A1396G	p.S466G	.	.	.
RBAK	57786	hgsc.bcm.edu	36	7	5070417	5070417	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021163	exon5	c.A804G	p.K268K	.	.	.
EGFR	1956	hgsc.bcm.edu	36	7	55191774	55191774	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201282	exon9	c.C1061T	p.T354M	.	.	.
HEATR2	54919	hgsc.bcm.edu	36	7	786161	786161	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017802	exon12	c.C2285T	p.A762V	.	.	.
SEMA3E	9723	hgsc.bcm.edu	36	7	82835014	82835014	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012431	exon17	c.G2152T	p.G718C	.	.	.
DMTF1	9988	hgsc.bcm.edu	36	7	86649561	86649561	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142327	exon10	c.C792T	p.C264C	.	.	.
ABCB4	5244	hgsc.bcm.edu	36	7	86876615	86876615	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018849	exon24	c.T2954C	p.V985A	.	.	.
ZNF498	221785	hgsc.bcm.edu	36	7	99065443	99065443	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145115	exon8	c.G1499A	p.R500Q	.	.	.
C20orf79	140856	hgsc.bcm.edu	36	20	18742792	18742792	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178483	exon1	c.G333A	p.P111P	.	.	.
CST9	128822	hgsc.bcm.edu	36	20	23534352	23534352	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008693	exon1	c.A150G	p.T50T	.	.	.
ZNF343	79175	hgsc.bcm.edu	36	20	2412938	2412938	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024325	exon6	c.T669C	p.P223P	.	.	.
SRC	6714	hgsc.bcm.edu	36	20	35462090	35462090	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005417	exon10	c.G1018A	p.V340I	.	.	.
R3HDML	140902	hgsc.bcm.edu	36	20	42412756	42412756	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178491	exon5	c.G672A	p.P224P	.	.	.
B4GALT5	9334	hgsc.bcm.edu	36	20	47693545	47693545	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004776	exon4	c.T414C	p.H138H	.	.	.
BCAS1	8537	hgsc.bcm.edu	36	20	52078766	52078766	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003657	exon4	c.C295T	p.L99F	.	.	.
ZBP1	81030	hgsc.bcm.edu	36	20	55621774	55621774	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160419	exon5	c.C521T	p.A174V	.	.	.
BMP2	650	hgsc.bcm.edu	36	20	6707343	6707343	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001200	exon3	c.T798A	p.T266T	.	.	.
PLCB1	23236	hgsc.bcm.edu	36	20	8693968	8693968	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182734	exon26	c.G2893T	p.A965S	.	.	.
TOX4	9878	hgsc.bcm.edu	36	14	21025601	21025601	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014828	exon3	c.A227G	p.Q76R	.	.	.
MMP14	4323	hgsc.bcm.edu	36	14	22383765	22383765	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004995	exon8	c.G1237A	p.D413N	.	.	.
ACIN1	22985	hgsc.bcm.edu	36	14	22600482	22600482	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164816	exon10	c.C1282T	p.R428W	.	.	.
SCFD1	23256	hgsc.bcm.edu	36	14	30254897	30254897	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182835	exon19	c.G1445A	p.R482H	.	.	.
C14orf126	112487	hgsc.bcm.edu	36	14	30987091	30987091	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080664	exon3	c.T502C	p.F168L	.	.	.
MIPOL1	145282	hgsc.bcm.edu	36	14	36908511	36908511	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001195297	exon12	c.G867A	p.E289E	.	.	.
MNAT1	4331	hgsc.bcm.edu	36	14	60332725	60332725	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177963	exon2	c.G127A	p.A43T	.	.	.
RPS6KL1	83694	hgsc.bcm.edu	36	14	74443512	74443512	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031464	exon10	c.T1515C	p.H505H	.	.	.
ANGEL1	23357	hgsc.bcm.edu	36	14	76339899	76339899	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015305	exon6	c.G1490A	p.C497Y	.	.	.
ZC3H14	79882	hgsc.bcm.edu	36	14	88131090	88131090	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207662	exon1	c.T267C	p.N89N	.	.	.
MORC2	22880	hgsc.bcm.edu	36	22	29675789	29675789	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014941	exon6	c.A80C	p.K27T	.	.	.
EP300	2033	hgsc.bcm.edu	36	22	39894775	39894775	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001429	exon25	c.A4130G	p.H1377R	.	.	.
LPHN1	22859	hgsc.bcm.edu	36	19	14155372	14155372	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014921	exon2	c.G43A	p.A15T	.	.	.
CYP4F12	66002	hgsc.bcm.edu	36	19	15667837	15667837	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023944	exon10	c.A1207G	p.T403A	.	.	.
ZNF506	440515	hgsc.bcm.edu	36	19	19778815	19778815	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145404	exon2	c.C66T	p.D22D	.	.	.
GNA15	2769	hgsc.bcm.edu	36	19	3108856	3108856	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002068	exon6	c.C875T	p.A292V	.	.	.
GPATCH1	55094	hgsc.bcm.edu	36	19	38294485	38294485	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018025	exon12	c.G1601A	p.C534Y	.	.	.
FXYD5	53827	hgsc.bcm.edu	36	19	40352318	40352318	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164605	exon9	c.G497A	p.C166Y	.	.	.
AXL	558	hgsc.bcm.edu	36	19	46428977	46428977	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021913	exon6	c.G717A	p.T239T	.	.	.
ATP1A3	478	hgsc.bcm.edu	36	19	47178036	47178036	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152296	exon9	c.G1056T	p.E352D	.	.	.
ATP1A3	478	hgsc.bcm.edu	36	19	47184072	47184072	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152296	exon4	c.G213A	p.T71T	.	.	.
EML2	24139	hgsc.bcm.edu	36	19	50808751	50808751	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193269	exon21	c.C2153T	p.A718V	.	.	.
HRC	3270	hgsc.bcm.edu	36	19	54349563	54349563	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002152	exon1	c.T744C	p.D248D	.	.	.
FPR3	2359	hgsc.bcm.edu	36	19	57019711	57019711	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002030	exon2	c.A898G	p.I300V	.	.	.
PRKCG	5582	hgsc.bcm.edu	36	19	59099783	59099783	+	Missense_Mutation	SNP	G	G	A	rs41275818	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002739	exon16	c.G1739A	p.R580Q	.	.	.
LILRA4	23547	hgsc.bcm.edu	36	19	59541085	59541085	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012276	exon4	c.G589A	p.G197S	.	.	.
KIR2DL1	3802	hgsc.bcm.edu	36	19	59986753	59986753	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014218	exon7	c.C821T	p.A274V	.	.	.
KIR2DL4	3805	hgsc.bcm.edu	36	19	60017145	60017145	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080770	exon7	c.G796A	p.A266T	.	.	.
HSPBP1	23640	hgsc.bcm.edu	36	19	60465801	60465801	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012267	exon8	c.G1067A	p.S356N	.	.	.
ZNF426	79088	hgsc.bcm.edu	36	19	9504551	9504551	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024106	exon6	c.T295C	p.S99P	.	.	.
UBR5	51366	hgsc.bcm.edu	36	8	103396194	103396194	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015902	exon15	c.G1848A	p.T616T	.	.	.
FZD6	8323	hgsc.bcm.edu	36	8	104405998	104405998	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164615	exon4	c.G488T	p.R163M	.	.	.
WDSOF1	25879	hgsc.bcm.edu	36	8	104508624	104508624	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015420	exon5	c.A1048C	p.S350R	.	.	.
COL14A1	7373	hgsc.bcm.edu	36	8	121371186	121371186	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021110	exon34	c.G4236A	p.P1412P	.	.	.
COL14A1	7373	hgsc.bcm.edu	36	8	121413563	121413563	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021110	exon41	c.C4662A	p.G1554G	.	.	.
ZHX2	22882	hgsc.bcm.edu	36	8	124034426	124034426	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014943	exon3	c.G1495A	p.V499I	.	.	.
MTSS1	9788	hgsc.bcm.edu	36	8	125634840	125634840	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014751	exon14	c.C1842T	p.P614P	.	.	.
MTSS1	9788	hgsc.bcm.edu	36	8	125634964	125634964	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014751	exon14	c.T1718C	p.L573P	.	.	.
SLC45A4	57210	hgsc.bcm.edu	36	8	142301001	142301001	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080431	exon2	c.T134C	p.I45T	.	.	.
LPL	4023	hgsc.bcm.edu	36	8	19853649	19853649	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000237	exon3	c.G339A	p.W113X	.	.	.
RHOBTB2	23221	hgsc.bcm.edu	36	8	22918918	22918918	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160036	exon5	c.G347A	p.R116H	.	.	.
EXTL3	2137	hgsc.bcm.edu	36	8	28631174	28631174	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001440	exon3	c.C1679T	p.A560V	.	.	.
SFRP1	6422	hgsc.bcm.edu	36	8	41242123	41242123	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003012	exon3	c.A665T	p.D222V	.	.	.
ST18	9705	hgsc.bcm.edu	36	8	53207144	53207144	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014682	exon22	c.G2593T	p.E865X	.	.	.
RP1	6101	hgsc.bcm.edu	36	8	55701242	55701242	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006269	exon4	c.C2247T	p.L749L	.	.	.
C8orf34	116328	hgsc.bcm.edu	36	8	69862316	69862316	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052958	exon12	c.C1540T	p.Q514X	.	.	.
KIAA1429	25962	hgsc.bcm.edu	36	8	95600409	95600409	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015496	exon9	c.C2493T	p.Y831Y	.	.	.
SLC25A24	29957	hgsc.bcm.edu	36	1	108483290	108483290	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013386	exon9	c.T1162C	p.L388L	.	.	.
CLCC1	23155	hgsc.bcm.edu	36	1	109285589	109285589	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001048210	exon7	c.G757A	p.V253M	.	.	.
SSU72	29101	hgsc.bcm.edu	36	1	1490115	1490115	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014188	exon2	c.T125C	p.V42A	.	.	.
FLG	2312	hgsc.bcm.edu	36	1	150546656	150546656	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002016	exon3	c.A7330G	p.K2444E	.	.	.
SLC27A3	11000	hgsc.bcm.edu	36	1	152018492	152018492	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024330	exon9	c.C1935T	p.H645H	.	.	.
GATAD2B	57459	hgsc.bcm.edu	36	1	152052391	152052391	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020699	exon8	c.C1378T	p.R460W	.	.	.
DCST2	127579	hgsc.bcm.edu	36	1	153270286	153270286	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144622	exon5	c.G788A	p.R263H	.	.	.
IQGAP3	128239	hgsc.bcm.edu	36	1	154775928	154775928	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178229	exon25	c.T2918C	p.L973P	.	.	.
ARHGAP30	257106	hgsc.bcm.edu	36	1	159289744	159289744	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181720	exon6	c.C592T	p.R198W	.	.	.
ASTN1	460	hgsc.bcm.edu	36	1	175268601	175268601	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004319	exon3	c.T479C	p.M160T	.	.	.
RGL1	23179	hgsc.bcm.edu	36	1	182124321	182124321	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015149	exon9	c.G1147A	p.A383T	.	.	.
KIAA0090	23065	hgsc.bcm.edu	36	1	19434232	19434232	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015047	exon13	c.G1411T	p.G471X	.	.	.
KIF21B	23046	hgsc.bcm.edu	36	1	199222642	199222642	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017596	exon26	c.G3642A	p.T1214T	.	.	.
PPP1R15B	84919	hgsc.bcm.edu	36	1	202646664	202646664	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032833	exon1	c.T499C	p.L167L	.	.	.
IL19	29949	hgsc.bcm.edu	36	1	205081036	205081036	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013371	exon6	c.A428T	p.N143I	.	.	.
CENPF	1063	hgsc.bcm.edu	36	1	212897325	212897325	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016343	exon18	c.C8912T	p.T2971M	.	.	.
USH2A	7399	hgsc.bcm.edu	36	1	214415252	214415252	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206933	exon21	c.C4592T	p.P1531L	.	.	.
CNIH3	149111	hgsc.bcm.edu	36	1	222871554	222871554	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152495	exon1	c.G55A	p.A19T	.	.	.
KDM1	23028	hgsc.bcm.edu	36	1	23255056	23255056	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001009999	exon7	c.G928T	p.G310C	.	.	.
OR6F1	343169	hgsc.bcm.edu	36	1	245941952	245941952	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005286	exon1	c.G729A	p.S243S	.	.	.
ARID1A	8289	hgsc.bcm.edu	36	1	26979306	26979306	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006015	exon20	c.C6330T	p.A2110A	.	.	.
CSMD2	114784	hgsc.bcm.edu	36	1	33843536	33843536	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052896	exon43	c.C6471T	p.G2157G	.	.	.
CSMD2	114784	hgsc.bcm.edu	36	1	33852757	33852757	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052896	exon40	c.G5947A	p.G1983S	.	.	.
C1orf113	79729	hgsc.bcm.edu	36	1	36558863	36558863	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024676	exon11	c.C1679T	p.A560V	.	.	.
MACF1	23499	hgsc.bcm.edu	36	1	39573846	39573846	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033044	exon1	c.A4319G	p.Y1440C	.	.	.
TRIT1	54802	hgsc.bcm.edu	36	1	40086311	40086311	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017646	exon6	c.C749T	p.A250V	.	.	.
HIVEP3	59269	hgsc.bcm.edu	36	1	41820922	41820922	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024503	exon4	c.C2134T	p.L712L	.	.	.
CDC20	991	hgsc.bcm.edu	36	1	43598516	43598516	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001255	exon6	c.C622A	p.L208M	.	.	.
STIL	6491	hgsc.bcm.edu	36	1	47489943	47489943	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001048166	exon17	c.G3319T	p.G1107W	.	.	.
LRP8	7804	hgsc.bcm.edu	36	1	53502456	53502456	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017522	exon9	c.G1241A	p.R414Q	.	.	.
C1orf177	163747	hgsc.bcm.edu	36	1	55045327	55045327	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001110533	exon2	c.C175T	p.R59C	.	.	.
LEPR	3953	hgsc.bcm.edu	36	1	65874565	65874565	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002303	exon20	c.C2777T	p.T926I	.	.	.
PDE4B	5142	hgsc.bcm.edu	36	1	66606324	66606324	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002600	exon15	c.C1650T	p.T550T	.	.	.
FPGT	8790	hgsc.bcm.edu	36	1	74443480	74443480	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199329	exon4	c.T344C	p.V115A	.	.	.
TNNI3K	51086	hgsc.bcm.edu	36	1	74605584	74605584	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199327	exon14	c.C1537T	p.P513S	.	.	.
WDR63	126820	hgsc.bcm.edu	36	1	85332721	85332721	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145172	exon10	c.A1068G	p.V356V	.	.	.
SH3GLB1	51100	hgsc.bcm.edu	36	1	86957824	86957824	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016009	exon3	c.T261C	p.A87A	.	.	.
NNMT	4837	hgsc.bcm.edu	36	11	113688353	113688353	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006169	exon3	c.G739A	p.A247T	.	.	.
SIDT2	51092	hgsc.bcm.edu	36	11	116565923	116565923	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040455	exon16	c.C1465A	p.L489I	.	.	.
SIDT2	51092	hgsc.bcm.edu	36	11	116567861	116567861	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040455	exon19	c.G1793A	p.R598Q	.	.	.
MPZL2	10205	hgsc.bcm.edu	36	11	117638491	117638491	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144765	exon3	c.G308A	p.R103Q	.	.	.
HINFP	25988	hgsc.bcm.edu	36	11	118508584	118508584	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015517	exon8	c.A758G	p.N253S	.	.	.
OR8B4	283162	hgsc.bcm.edu	36	11	123799221	123799221	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005196	exon1	c.T757C	p.S253P	.	.	.
DCPS	28960	hgsc.bcm.edu	36	11	125718446	125718446	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014026	exon5	c.G671A	p.R224H	.	.	.
APLP2	334	hgsc.bcm.edu	36	11	129518479	129518479	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001642	exon18	c.C2218T	p.R740C	.	.	.
NAV2	89797	hgsc.bcm.edu	36	11	19911395	19911395	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001111018	exon7	c.T837C	p.S279S	.	.	.
PAX6	5080	hgsc.bcm.edu	36	11	31768857	31768857	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127612	exon12	c.G1160A	p.G387D	.	.	.
TTC17	55761	hgsc.bcm.edu	36	11	43428273	43428273	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018259	exon20	c.G2852A	p.G951D	.	.	.
TSPAN18	90139	hgsc.bcm.edu	36	11	44897964	44897964	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130783	exon7	c.C453T	p.N151N	.	.	.
PHF21A	51317	hgsc.bcm.edu	36	11	45949375	45949375	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001101802	exon7	c.C480T	p.T160T	.	.	.
NR1H3	10062	hgsc.bcm.edu	36	11	47239524	47239524	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130102	exon4	c.C521T	p.A174V	.	.	.
PSMC3	5702	hgsc.bcm.edu	36	11	47401029	47401029	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002804	exon7	c.A663G	p.K221K	.	.	.
HBD	3045	hgsc.bcm.edu	36	11	5211908	5211908	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000519	exon2	c.G204T	p.V68V	.	.	.
OR10W1	81341	hgsc.bcm.edu	36	11	57791189	57791189	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207374	exon1	c.C718G	p.L240V	.	.	.
OR5B12	390191	hgsc.bcm.edu	36	11	57964061	57964061	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004733	exon1	c.T140C	p.I47T	.	.	.
MS4A1	931	hgsc.bcm.edu	36	11	59992436	59992436	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021950	exon7	c.A813G	p.E271E	.	.	.
AHNAK	79026	hgsc.bcm.edu	36	11	62041072	62041072	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001620	exon5	c.C17393T	p.T5798M	.	.	.
CHRM1	1128	hgsc.bcm.edu	36	11	62433860	62433860	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000738	exon2	c.G1289A	p.R430H	.	.	.
APBB1	322	hgsc.bcm.edu	36	11	6381583	6381583	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164	exon3	c.C767T	p.P256L	.	.	.
LRP5	4041	hgsc.bcm.edu	36	11	67913964	67913964	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002335	exon7	c.C1452T	p.I484I	.	.	.
PPFIBP2	8495	hgsc.bcm.edu	36	11	7620123	7620123	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003621	exon17	c.A1536G	p.S512S	.	.	.
SYTL2	54843	hgsc.bcm.edu	36	11	85134463	85134463	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032943	exon4	c.C254A	p.A85D	.	.	.
SWAP70	23075	hgsc.bcm.edu	36	11	9727275	9727275	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015055	exon11	c.T1620G	p.H540Q	.	.	.
TFAP2A	7020	hgsc.bcm.edu	36	6	10508726	10508726	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003220	exon6	c.C966T	p.N322N	.	.	.
SEC63	11231	hgsc.bcm.edu	36	6	108341319	108341319	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007214	exon5	c.C458T	p.T153M	.	.	.
SLC22A16	85413	hgsc.bcm.edu	36	6	110852921	110852921	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033125	exon8	c.C1582A	p.L528I	.	.	.
LAMA4	3910	hgsc.bcm.edu	36	6	112568743	112568743	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001105207	exon22	c.A2867G	p.K956R	.	.	.
RNF217	154214	hgsc.bcm.edu	36	6	125439688	125439688	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152553	exon6	c.C592T	p.R198X	.	.	.
VNN2	8875	hgsc.bcm.edu	36	6	133118707	133118707	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004665	exon3	c.A505G	p.T169A	.	.	.
FAM54A	113115	hgsc.bcm.edu	36	6	136602627	136602627	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138419	exon6	c.G539A	p.R180H	.	.	.
UST	10090	hgsc.bcm.edu	36	6	149436846	149436846	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005715	exon8	c.G1122A	p.R374R	.	.	.
TIAM2	26230	hgsc.bcm.edu	36	6	155492328	155492328	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012454	exon3	c.G279A	p.T93T	.	.	.
JARID2	3720	hgsc.bcm.edu	36	6	15628287	15628287	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004973	exon18	c.T3567G	p.I1189M	.	.	.
PSMB1	5689	hgsc.bcm.edu	36	6	170700045	170700045	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002793	exon2	c.G195A	p.T65T	.	.	.
AOF1	221656	hgsc.bcm.edu	36	6	18268159	18268159	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153042	exon3	c.G54A	p.P18P	.	.	.
RNF144B	255488	hgsc.bcm.edu	36	6	18565476	18565476	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182757	exon5	c.G443A	p.C148Y	.	.	.
SLC17A2	10246	hgsc.bcm.edu	36	6	26032102	26032102	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005835	exon3	c.T40G	p.C14G	.	.	.
BTN2A2	10385	hgsc.bcm.edu	36	6	26500733	26500733	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006995	exon8	c.C1131T	p.F377F	.	.	.
WRNIP1	56897	hgsc.bcm.edu	36	6	2715356	2715356	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020135	exon3	c.A1018G	p.T340A	.	.	.
ZKSCAN3	80317	hgsc.bcm.edu	36	6	28439501	28439501	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024493	exon5	c.G687T	p.Q229H	.	.	.
TRIM26	7726	hgsc.bcm.edu	36	6	30274658	30274658	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003449	exon4	c.G202A	p.V68M	.	.	.
PPP1R10	5514	hgsc.bcm.edu	36	6	30680466	30680466	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002714	exon12	c.G980A	p.S327N	.	.	.
BAT3	7917	hgsc.bcm.edu	36	6	31718780	31718780	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001098534	exon14	c.C1740A	p.P580P	.	.	.
C6orf10	10665	hgsc.bcm.edu	36	6	32445708	32445708	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006781	exon2	c.T44C	p.L15P	.	.	.
TAP2	6891	hgsc.bcm.edu	36	6	32913390	32913390	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018833	exon3	c.T510C	p.P170P	.	.	.
ITPR3	3710	hgsc.bcm.edu	36	6	33746183	33746183	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002224	exon19	c.G2293A	p.A765T	.	.	.
SCUBE3	222663	hgsc.bcm.edu	36	6	35308976	35308976	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152753	exon6	c.C632T	p.T211M	.	.	.
DEF6	50619	hgsc.bcm.edu	36	6	35395652	35395652	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022047	exon9	c.G1461A	p.A487A	.	.	.
CPNE5	57699	hgsc.bcm.edu	36	6	36867825	36867825	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020939	exon8	c.C491T	p.T164I	.	.	.
POLH	5429	hgsc.bcm.edu	36	6	43673559	43673559	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006502	exon5	c.A639G	p.S213S	.	.	.
SPATS1	221409	hgsc.bcm.edu	36	6	44452754	44452754	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145026	exon9	c.T879A	p.A293A	.	.	.
TDRD6	221400	hgsc.bcm.edu	36	6	46766636	46766636	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010870	exon1	c.G2812T	p.V938L	.	.	.
MYO6	4646	hgsc.bcm.edu	36	6	76653318	76653318	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004999	exon25	c.C2545T	p.R849X	.	.	.
DNAH9	1770	hgsc.bcm.edu	36	17	11749837	11749837	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004662	exon7	c.A671G	p.D224G	.	.	.
CYTSB	92521	hgsc.bcm.edu	36	17	20049675	20049675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001033555	exon2	c.C1478T	p.T493M	.	.	.
RNF135	84282	hgsc.bcm.edu	36	17	26339249	26339249	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184992	exon3	c.G678T	p.Q226H	.	.	.
CCL15	6359	hgsc.bcm.edu	36	17	31348961	31348961	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032965	exon4	c.G297T	p.P99P	.	.	.
CRKRS	51755	hgsc.bcm.edu	36	17	34904458	34904458	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016507	exon5	c.T2404G	p.F802V	.	.	.
ERBB2	2064	hgsc.bcm.edu	36	17	35137313	35137313	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005862	exon29	c.C3309T	p.C1103C	.	.	.
IKZF3	22806	hgsc.bcm.edu	36	17	35201275	35201275	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_183230	exon5	c.A512G	p.E171G	.	.	.
CNTNAP1	8506	hgsc.bcm.edu	36	17	38099027	38099027	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003632	exon18	c.A2939G	p.Y980C	.	.	.
VPS25	84313	hgsc.bcm.edu	36	17	38179320	38179320	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032353	exon2	c.T97C	p.W33R	.	.	.
WNK4	65266	hgsc.bcm.edu	36	17	38188328	38188328	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032387	exon2	c.G645A	p.R215R	.	.	.
G6PC3	92579	hgsc.bcm.edu	36	17	39507156	39507156	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138387	exon2	c.T321C	p.G107G	.	.	.
FMNL1	752	hgsc.bcm.edu	36	17	40673703	40673703	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005892	exon12	c.G1158A	p.A386A	.	.	.
LRRC59	55379	hgsc.bcm.edu	36	17	45824822	45824822	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018509	exon4	c.C365A	p.P122H	.	.	.
ABCC3	8714	hgsc.bcm.edu	36	17	46100343	46100343	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003786	exon13	c.C1756T	p.P586S	.	.	.
SLC25A11	8402	hgsc.bcm.edu	36	17	4781914	4781914	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003562	exon8	c.G812A	p.R271H	.	.	.
MRC2	9902	hgsc.bcm.edu	36	17	58097229	58097229	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006039	exon3	c.C563T	p.T188I	.	.	.
MARCH10	162333	hgsc.bcm.edu	36	17	58232743	58232743	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001100875	exon2	c.A86G	p.Y29C	.	.	.
PSMC5	5705	hgsc.bcm.edu	36	17	59262196	59262196	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002805	exon8	c.G748A	p.E250K	.	.	.
ABCA9	10350	hgsc.bcm.edu	36	17	64498674	64498674	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080283	exon29	c.G3736A	p.A1246T	.	.	.
ST6GALNAC1	55808	hgsc.bcm.edu	36	17	72135190	72135190	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018414	exon3	c.T902A	p.L301H	.	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7640695	7640695	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020877	exon49	c.G7863T	p.K2621N	.	.	.
CSNK1D	1453	hgsc.bcm.edu	36	17	77804252	77804252	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139062	exon4	c.T494C	p.I165T	.	.	.
CCDC42	146849	hgsc.bcm.edu	36	17	8588589	8588589	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001158261	exon1	c.C64T	p.R22W	.	.	.
KRTAP15-1	254950	hgsc.bcm.edu	36	21	30734529	30734529	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181623	exon1	c.T13C	p.C5R	.	.	.
KRTAP19-4	337971	hgsc.bcm.edu	36	21	30791052	30791052	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181610	exon1	c.A248G	p.K83R	.	.	.
ERG	2078	hgsc.bcm.edu	36	21	38697498	38697498	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136154	exon6	c.C413A	p.P138H	.	.	.
IGSF5	150084	hgsc.bcm.edu	36	21	40059643	40059643	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080444	exon3	c.G412A	p.V138I	.	.	.
PWP2	5822	hgsc.bcm.edu	36	21	44370387	44370387	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005049	exon16	c.A2033G	p.Q678R	.	.	.
MYH11	4629	hgsc.bcm.edu	36	16	15749027	15749027	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040114	exon20	c.G2333A	p.R778Q	.	.	.
UMOD	7369	hgsc.bcm.edu	36	16	20262893	20262893	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003361	exon6	c.C1285A	p.L429M	.	.	.
TMEM159	57146	hgsc.bcm.edu	36	16	21092899	21092899	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020422	exon4	c.C333T	p.L111L	.	.	.
PLK1	5347	hgsc.bcm.edu	36	16	23599856	23599856	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005030	exon3	c.A698G	p.D233G	.	.	.
IL32	9235	hgsc.bcm.edu	36	16	3057409	3057409	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004221	exon3	c.G46A	p.A16T	.	.	.
SIAH1	6477	hgsc.bcm.edu	36	16	46953128	46953128	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003031	exon2	c.C713T	p.A238V	.	.	.
ADCY7	113	hgsc.bcm.edu	36	16	48905755	48905755	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114	exon23	c.G2908A	p.A970T	.	.	.
CETP	1071	hgsc.bcm.edu	36	16	55561052	55561052	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000078	exon4	c.G397A	p.E133K	.	.	.
CETP	1071	hgsc.bcm.edu	36	16	55564864	55564864	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000078	exon9	c.G871A	p.A291T	.	.	.
RSPRY1	89970	hgsc.bcm.edu	36	16	55822723	55822723	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133368	exon13	c.T1520G	p.I507S	.	.	.
CDH8	1006	hgsc.bcm.edu	36	16	60246914	60246914	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001796	exon11	c.G1867A	p.A623T	.	.	.
CDH8	1006	hgsc.bcm.edu	36	16	60412475	60412475	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001796	exon6	c.T879G	p.T293T	.	.	.
FHOD1	29109	hgsc.bcm.edu	36	16	65829104	65829104	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013241	exon7	c.A711G	p.A237A	.	.	.
TAT	6898	hgsc.bcm.edu	36	16	70167675	70167675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000353	exon2	c.G145A	p.A49T	.	.	.
PHLPP2	23035	hgsc.bcm.edu	36	16	70246762	70246762	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015020	exon16	c.C2467T	p.R823X	.	.	.
TERF2IP	54386	hgsc.bcm.edu	36	16	74247892	74247892	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018975	exon3	c.T1082C	p.I361T	.	.	.
MVP	9961	hgsc.bcm.edu	36	16	29755688	29755688	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017458	exon7	c.A817G	p.I273V	.	.	.
METTL4	64863	hgsc.bcm.edu	36	18	2534201	2534201	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022840	exon8	c.G1266A	p.P422P	.	.	.
DSC3	1825	hgsc.bcm.edu	36	18	26840943	26840943	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001941	exon12	c.G1816A	p.A606T	.	.	.
MOCOS	55034	hgsc.bcm.edu	36	18	32085196	32085196	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017947	exon11	c.A2116G	p.K706E	.	.	.
HDHD2	84064	hgsc.bcm.edu	36	18	42914875	42914875	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032124	exon3	c.T300A	p.P100P	.	.	.
MC4R	4160	hgsc.bcm.edu	36	18	56189855	56189855	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005912	exon1	c.C708T	p.R236R	.	.	.
SOCS6	9306	hgsc.bcm.edu	36	18	66143395	66143395	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004232	exon2	c.G511A	p.V171I	.	.	.
CNDP2	55748	hgsc.bcm.edu	36	18	70330701	70330701	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018235	exon7	c.C696T	p.Y232Y	.	.	.
SEC13	6396	hgsc.bcm.edu	36	3	10332076	10332076	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136232	exon3	c.C51T	p.C17C	.	.	.
SLC6A11	6538	hgsc.bcm.edu	36	3	10836169	10836169	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014229	exon2	c.C276T	p.Y92Y	.	.	.
FBXO40	51725	hgsc.bcm.edu	36	3	122828439	122828439	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016298	exon4	c.G2122A	p.V708I	.	.	.
ZNF148	7707	hgsc.bcm.edu	36	3	126435789	126435789	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021964	exon8	c.A742G	p.T248A	.	.	.
TMEM40	55287	hgsc.bcm.edu	36	3	12754235	12754235	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018306	exon8	c.A443G	p.Q148R	.	.	.
IFT122	55764	hgsc.bcm.edu	36	3	130720691	130720691	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052990	exon25	c.A3113G	p.D1038G	.	.	.
CNTN6	27255	hgsc.bcm.edu	36	3	1312440	1312440	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014461	exon6	c.C610G	p.Q204E	.	.	.
CCRL1	51554	hgsc.bcm.edu	36	3	133802096	133802096	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178445	exon1	c.A165G	p.G55G	.	.	.
SOX2	6657	hgsc.bcm.edu	36	3	182913139	182913139	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003106	exon1	c.G297A	p.A99A	.	.	.
DNAJB11	51726	hgsc.bcm.edu	36	3	187771444	187771444	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016306	exon1	c.G64A	p.A22T	.	.	.
KCNH8	131096	hgsc.bcm.edu	36	3	19270257	19270257	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144633	exon2	c.C184A	p.Q62K	.	.	.
C3orf59	151963	hgsc.bcm.edu	36	3	193999142	193999142	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178496	exon2	c.C1203A	p.S401S	.	.	.
GP5	2814	hgsc.bcm.edu	36	3	195599827	195599827	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004488	exon2	c.C474T	p.L158L	.	.	.
MUC4	4585	hgsc.bcm.edu	36	3	196964946	196964946	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138297	exon19	c.A2690G	p.E897G	.	.	.
UBE2E1	7324	hgsc.bcm.edu	36	3	23905696	23905696	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182666	exon4	c.A375G	p.A125A	.	.	.
SLC4A7	9497	hgsc.bcm.edu	36	3	27402507	27402507	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003615	exon23	c.A3345G	p.L1115L	.	.	.
C3orf39	84892	hgsc.bcm.edu	36	3	43097066	43097066	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032806	exon2	c.T862C	p.Y288H	.	.	.
TSP50	29122	hgsc.bcm.edu	36	3	46734008	46734008	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013270	exon2	c.C230T	p.P77L	.	.	.
QRICH1	54870	hgsc.bcm.edu	36	3	49089317	49089317	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198880	exon2	c.G138A	p.Q46Q	.	.	.
IP6K1	9807	hgsc.bcm.edu	36	3	49750754	49750754	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153273	exon3	c.G329A	p.R110Q	.	.	.
ADAMTS9	56999	hgsc.bcm.edu	36	3	64594470	64594470	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182920	exon13	c.A1982G	p.H661R	.	.	.
ST3GAL6	10402	hgsc.bcm.edu	36	3	99974376	99974376	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006100	exon5	c.C197T	p.A66V	.	.	.
PRDM4	11108	hgsc.bcm.edu	36	12	106652151	106652151	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012406	exon12	c.A2372G	p.Y791C	.	.	.
ATP2A2	488	hgsc.bcm.edu	36	12	109218911	109218911	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170665	exon5	c.T449A	p.I150N	.	.	.
BRAP	8315	hgsc.bcm.edu	36	12	110577806	110577806	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006768	exon10	c.C1258T	p.R420X	.	.	.
MED13L	23389	hgsc.bcm.edu	36	12	114913610	114913610	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015335	exon17	c.C3532T	p.L1178F	.	.	.
ETV6	2120	hgsc.bcm.edu	36	12	11796710	11796710	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001987	exon2	c.G93A	p.T31T	.	.	.
TMEM132D	121256	hgsc.bcm.edu	36	12	128135106	128135106	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133448	exon6	c.G1538A	p.S513N	.	.	.
POLE	5426	hgsc.bcm.edu	36	12	131754219	131754219	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006231	exon20	c.C2262T	p.Y754Y	.	.	.
PTPRO	5800	hgsc.bcm.edu	36	12	15545847	15545847	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002848	exon5	c.G688A	p.V230I	.	.	.
ARNTL2	56938	hgsc.bcm.edu	36	12	27412578	27412578	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020183	exon2	c.C148T	p.R50X	.	.	.
TMTC1	83857	hgsc.bcm.edu	36	12	29802943	29802943	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193451	exon3	c.C515T	p.A172V	.	.	.
PARP11	57097	hgsc.bcm.edu	36	12	3791765	3791765	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020367	exon8	c.C802T	p.R268W	.	.	.
PUS7L	83448	hgsc.bcm.edu	36	12	42416601	42416601	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001098615	exon7	c.C1575A	p.S525S	.	.	.
C12orf4	57102	hgsc.bcm.edu	36	12	4515528	4515528	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020374	exon2	c.C94T	p.L32F	.	.	.
DDX23	9416	hgsc.bcm.edu	36	12	47518052	47518052	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004818	exon6	c.A559G	p.M187V	.	.	.
CSRNP2	81566	hgsc.bcm.edu	36	12	49754049	49754049	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030809	exon3	c.C235T	p.R79C	.	.	.
PRR13	54458	hgsc.bcm.edu	36	12	52123807	52123807	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018457	exon3	c.T385C	p.Y129H	.	.	.
ITGA5	3678	hgsc.bcm.edu	36	12	53078748	53078748	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002205	exon28	c.G2843A	p.R948Q	.	.	.
ERBB3	2065	hgsc.bcm.edu	36	12	54765121	54765121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005915	exon3	c.G310A	p.V104M	ERBB3,ovary,NS,Substitution - Missense,0	.	.
STAT2	6773	hgsc.bcm.edu	36	12	55031194	55031194	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198332	exon10	c.G977A	p.R326Q	.	.	.
TIMELESS	8914	hgsc.bcm.edu	36	12	55112471	55112471	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003920	exon7	c.G636A	p.E212E	.	.	.
SLC26A10	65012	hgsc.bcm.edu	36	12	56302857	56302857	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133489	exon6	c.C812A	p.P271H	.	.	.
VWF	7450	hgsc.bcm.edu	36	12	5961339	5961339	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000552	exon42	c.G7161A	p.Q2387Q	.	.	.
XPOT	11260	hgsc.bcm.edu	36	12	63111772	63111772	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007235	exon18	c.T2164A	p.F722I	.	.	.
USP5	8078	hgsc.bcm.edu	36	12	6840417	6840417	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003481	exon12	c.C1384T	p.R462C	.	.	.
PLXNC1	10154	hgsc.bcm.edu	36	12	93087188	93087188	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005761	exon2	c.C1191T	p.G397G	.	.	.
WDR72	256764	hgsc.bcm.edu	36	15	51793924	51793924	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182758	exon6	c.A590G	p.Q197R	.	.	.
TCF12	6938	hgsc.bcm.edu	36	15	55311838	55311838	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207037	exon10	c.G743A	p.G248D	.	.	.
RNF111	54778	hgsc.bcm.edu	36	15	57137859	57137859	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017610	exon5	c.T1184C	p.V395A	.	.	.
TLN2	83660	hgsc.bcm.edu	36	15	60915018	60915018	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015059	exon53	c.C7158T	p.D2386D	.	.	.
TRIP4	9325	hgsc.bcm.edu	36	15	62488995	62488995	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016213	exon7	c.T958C	p.S320P	.	.	.
BBS4	585	hgsc.bcm.edu	36	15	70807335	70807335	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033028	exon9	c.T589C	p.F197L	.	.	.
CYP11A1	1583	hgsc.bcm.edu	36	15	72427335	72427335	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000781	exon2	c.C384A	p.A128A	.	.	.
CIB2	10518	hgsc.bcm.edu	36	15	76190593	76190593	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006383	exon3	c.T167C	p.M56T	.	.	.
AKAP13	11214	hgsc.bcm.edu	36	15	83923442	83923442	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006738	exon7	c.G1139A	p.G380E	.	.	.
MFGE8	4240	hgsc.bcm.edu	36	15	87250972	87250972	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114614	exon4	c.G429A	p.T143T	.	.	.
ANPEP	290	hgsc.bcm.edu	36	15	88136484	88136484	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001150	exon18	c.G2439T	p.W813C	.	.	.
IQGAP1	8826	hgsc.bcm.edu	36	15	88827622	88827622	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003870	exon29	c.G3581A	p.R1194Q	.	.	.
SLCO3A1	28232	hgsc.bcm.edu	36	15	90491234	90491234	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013272	exon8	c.C1529T	p.A510V	.	.	.
ASB7	140460	hgsc.bcm.edu	36	15	98987251	98987251	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024708	exon5	c.A298G	p.M100V	.	.	.
RG9MTD2	93587	hgsc.bcm.edu	36	4	100691150	100691150	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134665	exon7	c.G666A	p.A222A	.	.	.
MAPKSP1	8649	hgsc.bcm.edu	36	4	101025752	101025752	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021970	exon5	c.A207G	p.K69K	.	.	.
INTS12	57117	hgsc.bcm.edu	36	4	106823645	106823645	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142471	exon7	c.A1083C	p.K361N	.	.	.
BOD1L	259282	hgsc.bcm.edu	36	4	13210771	13210771	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_148894	exon10	c.C6851T	p.A2284V	.	.	.
SCOC	60592	hgsc.bcm.edu	36	4	141521616	141521616	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001153585	exon4	c.T277C	p.S93P	.	.	.
ZNF827	152485	hgsc.bcm.edu	36	4	146964050	146964050	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178835	exon8	c.T2357C	p.V786A	.	.	.
DCHS2	54798	hgsc.bcm.edu	36	4	155473802	155473802	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142552	exon5	c.C3008T	p.A1003V	.	.	.
FGA	2243	hgsc.bcm.edu	36	4	155727276	155727276	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021871	exon5	c.C755G	p.T252R	.	.	.
LRAT	9227	hgsc.bcm.edu	36	4	155885091	155885091	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004744	exon2	c.C163T	p.R55W	.	.	.
GUCY1A3	2982	hgsc.bcm.edu	36	4	156857775	156857775	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130682	exon8	c.C1587T	p.G529G	.	.	.
GRIA2	2891	hgsc.bcm.edu	36	4	158500573	158500573	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001083620	exon13	c.A1978G	p.T660A	.	.	.
ADAM29	11086	hgsc.bcm.edu	36	4	176133888	176133888	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130705	exon3	c.C637T	p.R213C	.	.	.
LETM1	3954	hgsc.bcm.edu	36	4	1788328	1788328	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012318	exon12	c.A1855G	p.I619V	.	.	.
SNX25	83891	hgsc.bcm.edu	36	4	186497594	186497594	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031953	exon11	c.T1490C	p.M497T	.	.	.
PIGG	54872	hgsc.bcm.edu	36	4	504924	504924	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017733	exon7	c.A1194G	p.S398S	.	.	.
PDE6B	5158	hgsc.bcm.edu	36	4	641213	641213	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145292	exon8	c.G494A	p.R165H	.	.	.
NPFFR2	10886	hgsc.bcm.edu	36	4	73231774	73231774	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144756	exon5	c.T653C	p.M218T	.	.	.
ADAMTS3	9508	hgsc.bcm.edu	36	4	73424128	73424128	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014243	exon5	c.C808T	p.R270C	.	.	.
GK2	2712	hgsc.bcm.edu	36	4	80548184	80548184	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033214	exon1	c.C195T	p.Y65Y	.	.	.
KLHL8	57563	hgsc.bcm.edu	36	4	88310689	88310689	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020803	exon7	c.T1311G	p.S437S	.	.	.
SMARCAD1	56916	hgsc.bcm.edu	36	4	95392930	95392930	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128429	exon9	c.C1030T	p.R344C	.	.	.
WWC3	55841	hgsc.bcm.edu	36	X	10022252	10022252	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015691	exon7	c.C588T	p.G196G	.	.	.
IRS4	8471	hgsc.bcm.edu	36	X	107862478	107862478	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003604	exon1	c.C3753A	p.D1251E	.	.	.
AMOT	154796	hgsc.bcm.edu	36	X	111910914	111910914	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133265	exon10	c.G1102T	p.E368X	.	.	.
WDR44	54521	hgsc.bcm.edu	36	X	117411192	117411192	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184966	exon3	c.A681G	p.R227R	.	.	.
BCORL1	63035	hgsc.bcm.edu	36	X	128999097	128999097	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021946	exon8	c.G4380A	p.L1460L	.	.	.
ATP11C	286410	hgsc.bcm.edu	36	X	138641562	138641562	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173694	exon29	c.A3316G	p.R1106G	.	.	.
MAMLD1	10046	hgsc.bcm.edu	36	X	149388820	149388820	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177466	exon2	c.C242T	p.A81V	.	.	.
TKTL1	8277	hgsc.bcm.edu	36	X	153192664	153192664	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145933	exon5	c.C533T	p.T178I	.	.	.
GAB3	139716	hgsc.bcm.edu	36	X	153581499	153581499	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001081573	exon5	c.C1099T	p.R367X	.	.	.
CXorf15	55787	hgsc.bcm.edu	36	X	16765679	16765679	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018360	exon8	c.A1102G	p.M368V	.	.	.
MAGEB1	4112	hgsc.bcm.edu	36	X	30179504	30179504	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002363	exon4	c.C973T	p.R325C	.	.	.
MAOA	4128	hgsc.bcm.edu	36	X	43456948	43456948	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000240	exon5	c.T464C	p.M155T	.	.	.
KDM6A	7403	hgsc.bcm.edu	36	X	44807682	44807682	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021140	exon16	c.G1599A	p.L533L	.	.	.
PCTK1	5127	hgsc.bcm.edu	36	X	46968829	46968829	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006201	exon3	c.C304T	p.R102C	.	.	.
WDR13	64743	hgsc.bcm.edu	36	X	48343823	48343823	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166426	exon4	c.C420A	p.L140L	.	.	.
CACNA1F	778	hgsc.bcm.edu	36	X	48974277	48974277	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005183	exon4	c.A500G	p.D167G	.	.	.
SMC1A	8243	hgsc.bcm.edu	36	X	53456791	53456791	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006306	exon5	c.A638G	p.K213R	.	.	.
HUWE1	10075	hgsc.bcm.edu	36	X	53603981	53603981	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031407	exon56	c.C7629T	p.I2543I	.	.	.
KIF4A	24137	hgsc.bcm.edu	36	X	69480304	69480304	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012310	exon12	c.C1293T	p.N431N	.	.	.
DACH2	117154	hgsc.bcm.edu	36	X	85290534	85290534	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_053281	exon1	c.G254A	p.G85D	.	.	.
RANBP2	5903	hgsc.bcm.edu	36	2	108747691	108747691	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006267	exon20	c.A4264G	p.S1422G	.	.	.
ARHGEF4	50649	hgsc.bcm.edu	36	2	131420653	131420653	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015320	exon4	c.C402T	p.G134G	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	140975738	140975738	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018557	exon55	c.G8838A	p.P2946P	.	.	.
RIF1	55183	hgsc.bcm.edu	36	2	152004884	152004884	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177664	exon15	c.G1644C	p.T548T	.	.	.
NBAS	51594	hgsc.bcm.edu	36	2	15485334	15485334	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015909	exon22	c.A2375G	p.H792R	.	.	.
GALNT13	114805	hgsc.bcm.edu	36	2	155003444	155003444	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052917	exon12	c.A1490G	p.H497R	.	.	.
DDX1	1653	hgsc.bcm.edu	36	2	15681113	15681113	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004939	exon19	c.T1550A	p.I517N	.	.	.
CYTIP	9595	hgsc.bcm.edu	36	2	157980521	157980521	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004288	exon8	c.A994G	p.S332G	.	.	.
CCDC148	130940	hgsc.bcm.edu	36	2	158743663	158743663	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138803	exon12	c.C1462T	p.R488W	.	.	.
SCN2A	6326	hgsc.bcm.edu	36	2	165873514	165873514	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040143	exon4	c.C569A	p.P190Q	.	.	.
TTC30A	92104	hgsc.bcm.edu	36	2	178189692	178189692	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152275	exon1	c.G1984T	p.G662X	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179377595	179377595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133379	exon2	c.C20T	p.T7M	.	.	.
NCKAP1	10787	hgsc.bcm.edu	36	2	183526251	183526251	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013436	exon21	c.C2207A	p.P736H	.	.	.
COL3A1	1281	hgsc.bcm.edu	36	2	189565874	189565874	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000090	exon15	c.C1013A	p.P338H	.	.	.
CASP8	841	hgsc.bcm.edu	36	2	201839576	201839576	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033356	exon2	c.C122A	p.A41D	.	.	.
MARCH4	57574	hgsc.bcm.edu	36	2	216850653	216850653	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020814	exon3	c.C852T	p.D284D	.	.	.
SGPP2	130367	hgsc.bcm.edu	36	2	223131650	223131650	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152386	exon5	c.T989C	p.V330A	.	.	.
EFHD1	80303	hgsc.bcm.edu	36	2	233254630	233254630	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025202	exon4	c.G677A	p.R226H	.	.	.
DGKD	8527	hgsc.bcm.edu	36	2	234010840	234010840	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152879	exon8	c.G898A	p.A300T	.	.	.
ASB1	51665	hgsc.bcm.edu	36	2	239019846	239019846	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040445	exon5	c.G963A	p.S321S	.	.	.
ANKMY1	51281	hgsc.bcm.edu	36	2	241095701	241095701	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016552	exon12	c.C2208A	p.A736A	.	.	.
MTERFD2	130916	hgsc.bcm.edu	36	2	241684101	241684101	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182501	exon4	c.C1131T	p.D377D	.	.	.
CAD	790	hgsc.bcm.edu	36	2	27317727	27317727	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004341	exon38	c.C5842T	p.R1948C	.	.	.
PLB1	151056	hgsc.bcm.edu	36	2	28643207	28643207	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001170585	exon20	c.G1354A	p.A452T	.	.	.
CDC42EP3	10602	hgsc.bcm.edu	36	2	37726894	37726894	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006449	exon2	c.G341A	p.G114E	.	.	.
MSH6	2956	hgsc.bcm.edu	36	2	47887199	47887199	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000179	exon9	c.A3906G	p.A1302A	.	.	.
SPTBN1	6711	hgsc.bcm.edu	36	2	54607064	54607064	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003128	exon2	c.C5T	p.T2M	.	.	.
RTN4	57142	hgsc.bcm.edu	36	2	55107565	55107565	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020532	exon3	c.C1174T	p.R392X	.	.	.
COMMD1	150684	hgsc.bcm.edu	36	2	62081518	62081518	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152516	exon2	c.G359A	p.R120Q	.	.	.
KDM3A	55818	hgsc.bcm.edu	36	2	86537646	86537646	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146688	exon8	c.C784T	p.R262C	.	.	.
RNF103	7844	hgsc.bcm.edu	36	2	86685610	86685610	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198951	exon5	c.C913T	p.L305F	.	.	.
REV1	51455	hgsc.bcm.edu	36	2	99404418	99404418	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016316	exon11	c.G1806A	p.T602T	.	.	.
TGFBR1	7046	hgsc.bcm.edu	36	9	100951355	100951355	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004612	exon9	c.C1459T	p.R487W	.	.	.
TEX10	54881	hgsc.bcm.edu	36	9	102132185	102132185	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017746	exon6	c.T1338C	p.N446N	.	.	.
GRIN3A	116443	hgsc.bcm.edu	36	9	103473055	103473055	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133445	exon3	c.G1460A	p.G487E	.	.	.
SUSD1	64420	hgsc.bcm.edu	36	9	113944422	113944422	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022486	exon5	c.A705C	p.Q235H	.	.	.
RGS3	5998	hgsc.bcm.edu	36	9	115386011	115386011	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144488	exon21	c.C2498T	p.T833I	.	.	.
DEC1	50514	hgsc.bcm.edu	36	9	117202491	117202491	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017418	exon6	c.C46A	p.P16T	.	.	.
OR1J1	347168	hgsc.bcm.edu	36	9	124279357	124279357	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004451	exon1	c.A670G	p.T224A	.	.	.
SPTAN1	6709	hgsc.bcm.edu	36	9	130383977	130383977	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001195532	exon12	c.G1557A	p.Q519Q	.	.	.
NUP188	23511	hgsc.bcm.edu	36	9	130772867	130772867	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015354	exon11	c.T922G	p.C308G	.	.	.
NUP188	23511	hgsc.bcm.edu	36	9	130788703	130788703	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015354	exon21	c.A2122T	p.M708L	.	.	.
NUP214	8021	hgsc.bcm.edu	36	9	132996001	132996001	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005085	exon5	c.T620C	p.L207P	.	.	.
GTF3C5	9328	hgsc.bcm.edu	36	9	134919683	134919683	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001122823	exon7	c.C1056T	p.T352T	.	.	.
SURF4	6836	hgsc.bcm.edu	36	9	135223332	135223332	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033161	exon3	c.C276T	p.Y92Y	.	.	.
DBH	1621	hgsc.bcm.edu	36	9	135491566	135491566	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000787	exon1	c.C252T	p.G84G	.	.	.
PSIP1	11168	hgsc.bcm.edu	36	9	15456799	15456799	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128217	exon15	c.C1479T	p.N493N	.	.	.
DENND4C	55667	hgsc.bcm.edu	36	9	19295499	19295499	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017925	exon6	c.T753C	p.I251I	.	.	.
MLLT3	4300	hgsc.bcm.edu	36	9	20404280	20404280	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004529	exon5	c.C564T	p.S188S	.	.	.
CLTA	1211	hgsc.bcm.edu	36	9	36189033	36189033	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184760	exon3	c.T313C	p.S105P	.	.	.
KIAA1432	57589	hgsc.bcm.edu	36	9	5755498	5755498	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020829	exon19	c.C2689T	p.R897X	.	.	.
TMC1	117531	hgsc.bcm.edu	36	9	74625656	74625656	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138691	exon20	c.G1842T	p.W614C	.	.	.
PTCH1	5727	hgsc.bcm.edu	36	9	97284077	97284077	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001083605	exon5	c.T268A	p.L90I	.	.	.
C13orf39	196541	hgsc.bcm.edu	36	13	102136489	102136489	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010977	exon4	c.G688A	p.D230N	.	.	.
ARHGEF7	8874	hgsc.bcm.edu	36	13	110751185	110751185	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001113513	exon18	c.A1753T	p.I585L	.	.	.
SACS	26278	hgsc.bcm.edu	36	13	22830552	22830552	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014363	exon7	c.G526A	p.A176T	.	.	.
LNX2	222484	hgsc.bcm.edu	36	13	27020587	27020587	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153371	exon10	c.C1958T	p.A653V	.	.	.
MTRF1	9617	hgsc.bcm.edu	36	13	40712474	40712474	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004294	exon6	c.G793A	p.E265K	.	.	.
AKAP11	11215	hgsc.bcm.edu	36	13	41772395	41772395	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016248	exon8	c.C1513T	p.R505C	.	.	.
ZC3H13	23091	hgsc.bcm.edu	36	13	45440111	45440111	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015070	exon15	c.C3850T	p.R1284X	.	.	.
ZC3H13	23091	hgsc.bcm.edu	36	13	45457724	45457724	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015070	exon10	c.C1429T	p.R477W	.	.	.
HTR2A	3356	hgsc.bcm.edu	36	13	46307039	46307039	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001165947	exon3	c.G1098A	p.K366K	.	.	.
VPS36	51028	hgsc.bcm.edu	36	13	51889255	51889255	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016075	exon12	c.G928C	p.V310L	.	.	.
EDNRB	1910	hgsc.bcm.edu	36	13	77390290	77390290	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001122659	exon1	c.C420T	p.I140I	.	.	.
TM9SF2	9375	hgsc.bcm.edu	36	13	98994155	98994155	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004800	exon10	c.A1055G	p.H352R	.	.	.
BTRC	8945	hgsc.bcm.edu	36	10	103286314	103286314	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003939	exon11	c.A1383G	p.A461A	.	.	.
KCNIP2	30819	hgsc.bcm.edu	36	10	103577134	103577134	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173192	exon9	c.T725C	p.M242T	.	.	.
PDCD11	22984	hgsc.bcm.edu	36	10	105174959	105174959	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014976	exon20	c.G2992A	p.A998T	.	.	.
EIF3A	8661	hgsc.bcm.edu	36	10	120791566	120791566	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003750	exon19	c.T3456C	p.A1152A	.	.	.
EIF3A	8661	hgsc.bcm.edu	36	10	120800148	120800148	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003750	exon16	c.T2348C	p.L783S	.	.	.
DHTKD1	55526	hgsc.bcm.edu	36	10	12200780	12200780	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018706	exon15	c.G2429A	p.G810D	.	.	.
SEC61A2	55176	hgsc.bcm.edu	36	10	12246312	12246312	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142628	exon11	c.T1218C	p.I406I	.	.	.
TUBGCP2	10844	hgsc.bcm.edu	36	10	134953434	134953434	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006659	exon9	c.G1244A	p.R415Q	.	.	.
FAM171A1	221061	hgsc.bcm.edu	36	10	15336793	15336793	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010924	exon4	c.G510A	p.T170T	.	.	.
VIM	7431	hgsc.bcm.edu	36	10	17317219	17317219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003380	exon7	c.G1054A	p.A352T	.	.	.
NEBL	10529	hgsc.bcm.edu	36	10	21137473	21137473	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006393	exon26	c.T2733C	p.S911S	.	.	.
PTCHD3	374308	hgsc.bcm.edu	36	10	27728027	27728027	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001034842	exon4	c.T1506C	p.Y502Y	.	.	.
BMS1	9790	hgsc.bcm.edu	36	10	42646486	42646486	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014753	exon23	c.A3785G	p.Q1262R	.	.	.
AKR1C2	1646	hgsc.bcm.edu	36	10	5035982	5035982	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_205845	exon2	c.A46G	p.M16V	.	.	.
OGDHL	55753	hgsc.bcm.edu	36	10	50628946	50628946	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001143996	exon6	c.A670C	p.I224L	.	.	.
CSTF2T	23283	hgsc.bcm.edu	36	10	53127721	53127721	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015235	exon1	c.G1595A	p.G532D	.	.	.
FBXO18	84893	hgsc.bcm.edu	36	10	6005620	6005620	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032807	exon17	c.A2506G	p.I836V	.	.	.
PSAP	5660	hgsc.bcm.edu	36	10	73261668	73261668	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042465	exon3	c.G190A	p.D64N	.	.	.
USP54	159195	hgsc.bcm.edu	36	10	74946608	74946608	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152586	exon18	c.T3582C	p.D1194D	.	.	.
PLAU	5328	hgsc.bcm.edu	36	10	75343807	75343807	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002658	exon8	c.G744A	p.T248T	.	.	.
VCL	7414	hgsc.bcm.edu	36	10	75524140	75524140	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014000	exon11	c.G1458A	p.P486P	.	.	.
ITIH5	80760	hgsc.bcm.edu	36	10	7658924	7658924	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030569	exon10	c.C1476A	p.P492P	.	.	.
DNTT	1791	hgsc.bcm.edu	36	10	98054300	98054300	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004088	exon1	c.C56T	p.T19M	.	.	.
TLL2	7093	hgsc.bcm.edu	36	10	98144991	98144991	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012465	exon13	c.A1669G	p.K557E	.	.	.
FNIP1	96459	hgsc.bcm.edu	36	5	131036502	131036502	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133372	exon14	c.G1534A	p.A512T	.	.	.
P4HA2	8974	hgsc.bcm.edu	36	5	131559043	131559043	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017974	exon13	c.C1395A	p.T465T	.	.	.
IL9	3578	hgsc.bcm.edu	36	5	135256068	135256068	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000590	exon5	c.A346C	p.T116P	.	.	.
DNAH5	1767	hgsc.bcm.edu	36	5	13790542	13790542	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001369	exon66	c.G11274A	p.K3758K	.	.	.
PCDHB1	29930	hgsc.bcm.edu	36	5	140412175	140412175	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013340	exon1	c.T936C	p.I312I	.	.	.
ARHGAP26	23092	hgsc.bcm.edu	36	5	142567135	142567135	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015071	exon21	c.A2168G	p.H723R	.	.	.
PDE6A	5145	hgsc.bcm.edu	36	5	149227859	149227859	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000440	exon18	c.C2191T	p.Q731X	.	.	.
GRIA1	2890	hgsc.bcm.edu	36	5	153058714	153058714	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114183	exon10	c.C1340T	p.A447V	.	.	.
CANX	821	hgsc.bcm.edu	36	5	179080093	179080093	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024649	exon10	c.C1108T	p.Q370X	.	.	.
CDH12	1010	hgsc.bcm.edu	36	5	22011182	22011182	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004061	exon6	c.G301A	p.V101I	.	.	.
ADAMTS12	81792	hgsc.bcm.edu	36	5	33631880	33631880	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030955	exon17	c.G2570T	p.G857V	.	.	.
DNAJC21	134218	hgsc.bcm.edu	36	5	34973406	34973406	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_194283	exon5	c.G657A	p.A219A	.	.	.
DEPDC1B	55789	hgsc.bcm.edu	36	5	59970472	59970472	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018369	exon7	c.C760T	p.P254S	.	.	.
PPWD1	23398	hgsc.bcm.edu	36	5	64914735	64914735	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015342	exon8	c.C1465T	p.R489X	.	.	.
CD180	4064	hgsc.bcm.edu	36	5	66515064	66515064	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005582	exon3	c.T1363C	p.C455R	.	.	.
CCDC125	202243	hgsc.bcm.edu	36	5	68631630	68631630	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_176816	exon7	c.G781A	p.D261N	.	.	.
ADCY2	108	hgsc.bcm.edu	36	5	7748919	7748919	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020546	exon6	c.G924A	p.P308P	.	.	.
VCAN	1462	hgsc.bcm.edu	36	5	82869705	82869705	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164097	exon7	c.A2166G	p.T722T	.	.	.
CCNH	902	hgsc.bcm.edu	36	5	86744307	86744307	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001239	exon1	c.A61T	p.R21X	.	.	.
FAM172A	83989	hgsc.bcm.edu	36	5	93414671	93414671	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032042	exon3	c.G124T	p.D42Y	.	.	.
TTC37	9652	hgsc.bcm.edu	36	5	94898537	94898537	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014639	exon9	c.T608A	p.V203E	.	.	.
