Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
DIP2C	22982	broad.mit.edu	36	10	402273	402274	+	Frame_Shift_Ins	INS	-	CA	CA	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014974	exon19	c.2210_2211insTG	p.A737fs	.	.	.
HPS6	79803	broad.mit.edu	36	10	103816242	103816242	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024747	exon1	c.C1021T	p.Q341X	.	.	.
PCGF6	84108	broad.mit.edu	36	10	105100533	105100533	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032154	exon1	c.A281C	p.E94A	.	.	.
PDCD11	22984	broad.mit.edu	36	10	105193712	105193712	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014976	exon34	c.A5175G	p.K1725K	.	.	.
CELF2	10659	broad.mit.edu	36	10	11410993	11410993	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025077	exon13	c.C1498T	p.R500C	.	.	.
KIAA1598	57698	broad.mit.edu	36	10	118677294	118677294	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018330	exon11	c.C1111T	p.R371X	.	.	.
MTG1	92170	broad.mit.edu	36	10	135066208	135066208	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138384	exon9	c.C693T	p.V231V	.	.	.
SPAG6	9576	broad.mit.edu	36	10	22718117	22718117	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012443	exon7	c.C875T	p.A292V	.	.	.
ARHGAP21	57584	broad.mit.edu	36	10	24948937	24948937	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020824	exon9	c.G1893A	p.T631T	.	.	.
RET	5979	broad.mit.edu	36	10	42916069	42916069	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020975	exon2	c.G230A	p.R77H	.	.	.
C10orf72	196740	broad.mit.edu	36	10	49955300	49955300	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001031746	exon4	c.C604A	p.Q202K	.	.	.
SLC18A3	6572	broad.mit.edu	36	10	50490296	50490296	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003055	exon1	c.C1504T	p.R502C	.	.	.
DKK1	22943	broad.mit.edu	36	10	53744737	53744737	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012242	exon2	c.G292A	p.A98T	.	.	.
C10orf18	54906	broad.mit.edu	36	10	5828203	5828203	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017782	exon15	c.C2813T	p.S938L	.	.	.
C10orf18	54906	broad.mit.edu	36	10	5830763	5830763	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017782	exon15	c.C5373T	p.H1791H	.	.	.
BICC1	80114	broad.mit.edu	36	10	60258561	60258561	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080512	exon21	c.G2829A	p.S943S	.	.	.
CCAR1	55749	broad.mit.edu	36	10	70186090	70186090	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018237	exon14	c.T1680C	p.R560R	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7254570	7254570	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029880	exon18	c.G2044A	p.D682N	.	.	.
ANXA7	310	broad.mit.edu	36	10	74809685	74809685	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001156	exon11	c.C1123T	p.R375C	.	.	.
GATA3	2625	broad.mit.edu	36	10	8146010	8146010	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002051	exon4	c.G824A	p.R275Q	.	.	.
LARP4B	23185	broad.mit.edu	36	10	848909	848909	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015155	exon17	c.G2174A	p.R725H	 LARP5,central_nervous_system,brain,Substitution - Missense,0 	.	.
WAPAL	23063	broad.mit.edu	36	10	88196004	88196004	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015045	exon16	c.G3297T	p.E1099D	.	.	.
CYP26A1	1592	broad.mit.edu	36	10	94824583	94824583	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_057157	exon3	c.G265A	p.E89K	.	.	.
RBP4	5950	broad.mit.edu	36	10	95350230	95350230	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006744	exon4	c.G265A	p.A89T	.	.	.
FRA10AC1	118924	broad.mit.edu	36	10	95442410	95442410	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145246	exon6	c.C363T	p.D121D	.	.	.
CYP2C19	1557	broad.mit.edu	36	10	96602485	96602485	+	Missense_Mutation	SNP	C	T	T	rs56337013	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000769	exon9	c.C1297T	p.R433W	.	.	.
CPXM2	119587	broad.mit.edu	36	10	125641019	125641020	+	Frame_Shift_Del	DEL	GC	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198148	exon1	c.146_147del	p.49_49del	.	.	.
FBXO18	84893	broad.mit.edu	36	10	5977150	5977150	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032807	exon2	c.148delG	p.A50fs	.	.	.
H2AFY2	55506	broad.mit.edu	36	10	71521671	71521671	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018649	exon4	c.432delG	p.K144fs	.	.	.
GATA3	2625	broad.mit.edu	36	10	8140458	8140458	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002051	exon3	c.426delG	p.S142fs	.	.	.
TNKS2	80351	broad.mit.edu	36	10	93591926	93591926	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025235	exon16	c.1857delA	p.T619fs	.	.	.
VWA5A	4013	broad.mit.edu	36	11	123513162	123513163	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014622	exon14	c.1856_1857insA	p.P619fs	.	.	.
OSBPL5	114879	broad.mit.edu	36	11	3082027	3082028	+	In_Frame_Ins	INS	-	GTC	GTC	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144063	exon9	c.1012_1013insGAC	p.Y338delinsDY	.	.	.
MUC6	4588	broad.mit.edu	36	11	1005851	1005851	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005961	exon31	c.G6950A	p.R2317Q	.	.	.
BIRC3	330	broad.mit.edu	36	11	101711996	101711996	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182962	exon8	c.G1414A	p.G472R	.	.	.
MMP12	4321	broad.mit.edu	36	11	102247847	102247847	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002426	exon3	c.C396T	p.Y132Y	.	.	.
AASDHPPT	60496	broad.mit.edu	36	11	105472792	105472792	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015423	exon6	c.A878T	p.D293V	.	.	.
BCO2	83875	broad.mit.edu	36	11	111593761	111593761	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001037290	exon12	c.C1592A	p.P531H	.	.	.
SIDT2	51092	broad.mit.edu	36	11	116569836	116569836	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040455	exon24	c.G2269A	p.V757M	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116894556	116894556	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020693	exon7	c.G1525A	p.V509M	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	117156562	117156562	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020693	exon2	c.C400T	p.R134W	.	.	.
DDX6	1656	broad.mit.edu	36	11	118139156	118139156	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004397	exon7	c.A716G	p.H239R	.	.	.
VPS11	55823	broad.mit.edu	36	11	118453963	118453963	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021729	exon10	c.G1737A	p.A579A	.	.	.
SC5DL	6309	broad.mit.edu	36	11	120683325	120683325	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006918	exon5	c.C794T	p.P265L	.	.	.
OR10G9	219870	broad.mit.edu	36	11	123399513	123399513	+	Missense_Mutation	SNP	A	T	T	rs55884373	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001953	exon1	c.A584T	p.E195V	.	.	.
CDON	50937	broad.mit.edu	36	11	125353470	125353470	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016952	exon18	c.G3295A	p.A1099T	.	.	.
CDON	50937	broad.mit.edu	36	11	125359050	125359050	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016952	exon16	c.C2922T	p.G974G	.	.	.
ARHGAP32	9743	broad.mit.edu	36	11	128355801	128355801	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014715	exon8	c.G744A	p.L248L	.	.	.
ADAMTS8	11095	broad.mit.edu	36	11	129792071	129792071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007037	exon3	c.C1070T	p.A357V	.	.	.
USH1C	10083	broad.mit.edu	36	11	17487586	17487586	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153676	exon18	c.C1906T	p.R636C	.	.	.
E2F8	79733	broad.mit.edu	36	11	19202912	19202912	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024680	exon13	c.C2473T	p.R825C	.	.	.
NAV2	89797	broad.mit.edu	36	11	20027247	20027247	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001111018	exon15	c.G4108A	p.A1370T	.	.	.
SLC6A5	9152	broad.mit.edu	36	11	20579598	20579598	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004211	exon2	c.G351A	p.A117A	.	.	.
NELL1	4745	broad.mit.edu	36	11	21091716	21091716	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006157	exon13	c.G1306A	p.D436N	.	.	.
IFITM1	8519	broad.mit.edu	36	11	304196	304196	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003641	exon1	c.C26G	p.A9G	.	.	.
OR51A4	401666	broad.mit.edu	36	11	4924701	4924701	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005329	exon1	c.C206T	p.A69V	.	.	.
OR5AS1	219447	broad.mit.edu	36	11	55554989	55554989	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001921	exon1	c.C519T	p.I173I	.	.	.
OR8K3	219473	broad.mit.edu	36	11	55842833	55842833	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005202	exon1	c.G475C	p.V159L	.	.	.
TMEM132A	54972	broad.mit.edu	36	11	60457671	60457671	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017870	exon8	c.C1441T	p.R481C	.	.	.
CD6	923	broad.mit.edu	36	11	60535183	60535183	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006725	exon6	c.G1150T	p.E384X	.	.	.
C11orf9	745	broad.mit.edu	36	11	61295776	61295776	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013279	exon6	c.C942T	p.H314H	.	.	.
BEST1	7439	broad.mit.edu	36	11	61475909	61475909	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004183	exon2	c.C55T	p.R19C	.	.	.
RELA	5970	broad.mit.edu	36	11	65183713	65183713	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021975	exon6	c.C559T	p.R187C	.	.	.
NPAS4	266743	broad.mit.edu	36	11	65948094	65948094	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178864	exon7	c.C1157A	p.A386E	.	.	.
CTSF	8722	broad.mit.edu	36	11	66090410	66090410	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003793	exon5	c.C649T	p.R217X	.	.	.
RBM4	5936	broad.mit.edu	36	11	66163916	66163916	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198843	exon2	c.G158A	p.R53H	.	.	.
C11orf80	79703	broad.mit.edu	36	11	66362459	66362459	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024650	exon15	c.G1714A	p.A572T	.	.	.
DEAF1	10522	broad.mit.edu	36	11	668761	668761	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021008	exon9	c.C1188A	p.G396G	.	.	.
CPT1A	1374	broad.mit.edu	36	11	68281750	68281750	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001876	exon19	c.C2260A	p.L754M	.	.	.
PPFIA1	8500	broad.mit.edu	36	11	69867590	69867590	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003626	exon15	c.G1875A	p.A625A	.	.	.
DHCR7	1717	broad.mit.edu	36	11	70829964	70829964	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001360	exon6	c.G583A	p.A195T	.	.	.
ARHGEF17	9828	broad.mit.edu	36	11	72756365	72756365	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014786	exon21	c.T6084C	p.S2028S	.	.	.
PLEKHB1	58473	broad.mit.edu	36	11	73044563	73044563	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021200	exon6	c.G458A	p.R153H	.	.	.
RAB6A	5870	broad.mit.edu	36	11	73107517	73107517	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002869	exon4	c.C250T	p.R84C	.	.	.
WNT11	7481	broad.mit.edu	36	11	75575879	75575879	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004626	exon5	c.G943A	p.G315R	.	.	.
GRM5	2915	broad.mit.edu	36	11	87882273	87882273	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000842	exon9	c.G2678T	p.R893L	.	.	.
AMOTL1	154810	broad.mit.edu	36	11	94173019	94173019	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130847	exon3	c.C1015A	p.P339T	.	.	.
WEE1	7465	broad.mit.edu	36	11	9555272	9555272	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001143976	exon5	c.G385A	p.A129T	.	.	.
WEE1	7465	broad.mit.edu	36	11	9566618	9566618	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001143976	exon11	c.G1192A	p.A398T	.	.	.
NLRX1	79671	broad.mit.edu	36	11	118559843	118559843	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_170722	exon10	c.2710delC	p.P904fs	.	.	.
STT3A	3703	broad.mit.edu	36	11	124977948	124977948	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152713	exon5	c.312delT	p.H104fs	.	.	.
SF1	7536	broad.mit.edu	36	11	64297493	64297493	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201998	exon3	c.221delC	p.P74fs	.	.	.
TBC1D10C	374403	broad.mit.edu	36	11	66933141	66933141	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198517	exon9	c.954delC	p.I318fs	.	.	.
MYO7A	4647	broad.mit.edu	36	11	76551609	76551609	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127179	exon14	c.1617delC	p.I539fs	.	.	.
NAALAD2	10003	broad.mit.edu	36	11	89525296	89525296	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005467	exon6	c.792delA	p.A264fs	.	.	.
SWAP70	23075	broad.mit.edu	36	11	9728051	9728052	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015055	exon12	c.1716_1717del	p.572_573del	.	.	.
CHD4	1108	broad.mit.edu	36	12	6562299	6562300	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001273	exon28	c.4212_4213insT	p.L1404fs	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107158397	107158397	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014653	exon8	c.C1291T	p.R431C	.	.	.
ANAPC7	51434	broad.mit.edu	36	12	109305119	109305119	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001137664	exon7	c.C949T	p.R317X	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111152996	111152996	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001109662	exon39	c.C5698T	p.R1900C	.	.	.
OAS3	4940	broad.mit.edu	36	12	111863793	111863793	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006187	exon2	c.T213C	p.G71G	.	.	.
TPCN1	53373	broad.mit.edu	36	12	112195777	112195777	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017901	exon10	c.C863A	p.P288H	.	.	.
PRB2	653247	broad.mit.edu	36	12	11437334	11437334	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006248	exon3	c.T945C	p.P315P	.	.	.
PXN	5829	broad.mit.edu	36	12	119136160	119136160	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025157	exon10	c.C876T	p.D292D	.	.	.
ORAI1	84876	broad.mit.edu	36	12	120563436	120563436	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032790	exon2	c.C416T	p.A139V	.	.	.
NCOR2	9612	broad.mit.edu	36	12	123398734	123398734	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006312	exon31	c.G3945A	p.K1315K	.	.	.
SCARB1	949	broad.mit.edu	36	12	123845728	123845728	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005505	exon9	c.C1168T	p.L390L	.	.	.
PIWIL1	9271	broad.mit.edu	36	12	129405481	129405481	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004764	exon11	c.C1267T	p.R423X	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129501790	129501790	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015347	exon5	c.G356A	p.R119Q	.	.	.
PUS1	80324	broad.mit.edu	36	12	130991806	130991806	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025215	exon5	c.G561A	p.T187T	.	.	.
NOC4L	79050	broad.mit.edu	36	12	131195386	131195386	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024078	exon2	c.G152A	p.R51H	.	.	.
IQSEC3	440073	broad.mit.edu	36	12	137110	137110	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001170738	exon7	c.G2432A	p.R811Q	.	.	.
GUCY2C	2984	broad.mit.edu	36	12	14705210	14705210	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004963	exon11	c.C1336T	p.L446F	.	.	.
ART4	420	broad.mit.edu	36	12	14885198	14885198	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021071	exon2	c.C301T	p.H101Y	.	.	.
CACNA2D4	93589	broad.mit.edu	36	12	1789996	1789996	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172364	exon28	c.C2632T	p.P878S	.	.	.
PIK3C2G	5288	broad.mit.edu	36	12	18692212	18692212	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004570	exon32	c.G4321T	p.G1441X	.	.	.
DCP1B	196513	broad.mit.edu	36	12	1932611	1932611	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152640	exon7	c.G756C	p.Q252H	.	.	.
SLCO1B1	10599	broad.mit.edu	36	12	21218811	21218811	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006446	exon4	c.T260C	p.F87S	.	.	.
GYS2	2998	broad.mit.edu	36	12	21607193	21607193	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021957	exon7	c.G988T	p.G330W	.	.	.
FKBP4	2288	broad.mit.edu	36	12	2778183	2778183	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002014	exon4	c.C444T	p.G148G	.	.	.
EFCAB4B	84766	broad.mit.edu	36	12	3633681	3633681	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144959	exon10	c.G1004A	p.S335N	.	.	.
PRPF40B	25766	broad.mit.edu	36	12	48323802	48323802	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001031698	exon23	c.G2379A	p.S793S	.	.	.
LIMA1	51474	broad.mit.edu	36	12	48902367	48902367	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001113546	exon4	c.G334A	p.A112T	.	.	.
CSRNP2	81566	broad.mit.edu	36	12	49743915	49743915	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030809	exon5	c.C1513T	p.P505S	.	.	.
KRT75	9119	broad.mit.edu	36	12	51111679	51111679	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004693	exon4	c.C785T	p.A262V	.	.	.
KRT4	3851	broad.mit.edu	36	12	51487840	51487840	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002272	exon7	c.C1423T	p.R475C	.	.	.
NCKAP1L	3071	broad.mit.edu	36	12	53199016	53199016	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001184976	exon15	c.G1322A	p.R441H	.	.	.
GDF11	10220	broad.mit.edu	36	12	54429829	54429829	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005811	exon3	c.C1120A	p.P374T	.	.	.
TMEM194A	23306	broad.mit.edu	36	12	55744220	55744220	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015257	exon5	c.G436A	p.V146I	.	.	.
LRP1	4035	broad.mit.edu	36	12	55889767	55889767	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002332	exon80	c.C12288T	p.D4096D	.	.	.
ARHGEF25	115557	broad.mit.edu	36	12	56295321	56295321	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001111270	exon12	c.G1112A	p.R371H	.	.	.
GRIP1	23426	broad.mit.edu	36	12	65051961	65051961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178074	exon21	c.C2591T	p.S864L	.	.	.
CHD4	1108	broad.mit.edu	36	12	6567312	6567312	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001273	exon24	c.G3530A	p.R1177H	.	.	.
GPR162	27239	broad.mit.edu	36	12	6804104	6804104	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019858	exon2	c.C779T	p.S260L	.	.	.
OSBPL8	114882	broad.mit.edu	36	12	75276717	75276717	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020841	exon22	c.C2334T	p.S778S	.	.	.
E2F7	144455	broad.mit.edu	36	12	75951861	75951861	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_203394	exon8	c.G1216T	p.A406S	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	83975025	83975025	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032165	exon8	c.G2323T	p.A775S	.	.	.
PHC1	1911	broad.mit.edu	36	12	8963637	8963637	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004426	exon3	c.C133T	p.R45W	.	.	.
PHC1	1911	broad.mit.edu	36	12	8981122	8981122	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004426	exon13	c.G2561A	p.R854H	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	98693516	98693516	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152788	exon7	c.A902T	p.D301V	.	.	.
PRB3	5544	broad.mit.edu	36	12	11312202	11312202	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006249	exon3	c.248delC	p.P83fs	.	.	.
OR6C4	341418	broad.mit.edu	36	12	54232206	54232206	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005494	exon1	c.929delA	p.X310	.	.	.
B4GALNT1	2583	broad.mit.edu	36	12	56311370	56311370	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001478	exon3	c.263delG	p.G88fs	.	.	.
C1R	715	broad.mit.edu	36	12	7133151	7133151	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001733	exon5	c.647delC	p.P216fs	.	.	.
ARL11	115761	broad.mit.edu	36	13	49102776	49102777	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138450	exon2	c.192_193insG	p.V64fs	.	.	.
TPP2	7174	broad.mit.edu	36	13	102086709	102086709	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003291	exon13	c.C1644T	p.G548G	.	.	.
SLC10A2	6555	broad.mit.edu	36	13	102499789	102499789	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000452	exon5	c.C770T	p.T257M	.	.	.
MYO16	23026	broad.mit.edu	36	13	108257038	108257038	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198950	exon7	c.C752T	p.A251V	.	.	.
TUBGCP3	10426	broad.mit.edu	36	13	112248127	112248127	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006322	exon11	c.G1222T	p.D408Y	.	.	.
PABPC3	5042	broad.mit.edu	36	13	24569009	24569009	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030979	exon1	c.G673A	p.D225N	.	.	.
ELF1	1997	broad.mit.edu	36	13	40454123	40454123	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172373	exon2	c.G68A	p.R23Q	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83353352	83353352	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052910	exon1	c.G292A	p.V98I	.	.	.
LNX2	222484	broad.mit.edu	36	13	27034655	27034655	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153371	exon5	c.1119delG	p.G373fs	.	.	.
CKAP2	26586	broad.mit.edu	36	13	51947035	51947035	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001098525	exon9	c.1810delA	p.K604fs	.	.	.
DACH1	1602	broad.mit.edu	36	13	71338862	71338862	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080759	exon1	c.47delC	p.P16fs	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104478072	104478072	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138420	exon7	c.G14761A	p.G4921S	.	.	.
PCK2	5106	broad.mit.edu	36	14	23642572	23642572	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004563	exon10	c.G1482A	p.M494I	.	.	.
RNF31	55072	broad.mit.edu	36	14	23696446	23696446	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017999	exon15	c.C2601T	p.N867N	.	.	.
TM9SF1	10548	broad.mit.edu	36	14	23732004	23732004	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001014842	exon3	c.G657A	p.R219R	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29169911	29169911	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002742	exon10	c.C1460T	p.A487V	.	.	.
NID2	22795	broad.mit.edu	36	14	51547458	51547458	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007361	exon18	c.C3608T	p.T1203M	.	.	.
KIAA0586	9786	broad.mit.edu	36	14	58019127	58019127	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014749	exon20	c.G2860T	p.G954C	.	.	.
PSEN1	5663	broad.mit.edu	36	14	72710095	72710095	+	Missense_Mutation	SNP	C	T	T	rs41345849	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000021	exon5	c.C407T	p.A136V	.	.	.
YLPM1	56252	broad.mit.edu	36	14	74300631	74300631	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019589	exon1	c.A686G	p.Q229R	.	.	.
FOXN3	1112	broad.mit.edu	36	14	88698965	88698965	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001085471	exon7	c.C1019A	p.A340D	.	.	.
OR11H6	122748	broad.mit.edu	36	14	19762072	19762072	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004480	exon1	c.364delT	p.F122fs	.	.	.
ADCY4	196883	broad.mit.edu	36	14	23873666	23873666	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198592	exon2	c.33delC	p.P11fs	.	.	.
ARHGAP5	394	broad.mit.edu	36	14	31632296	31632296	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001030055	exon2	c.2670delT	p.D890fs	.	.	.
FOXN3	1112	broad.mit.edu	36	14	88948287	88948287	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001085471	exon2	c.287delC	p.P96fs	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22472554	22472554	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018958	exon1	c.C447T	p.T149T	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23510122	23510122	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024490	exon10	c.C2136T	p.C712C	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29081917	29081917	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002420	exon27	c.G4212A	p.T1404T	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29146655	29146655	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002420	exon5	c.T455G	p.L152W	.	.	.
OTUD7A	161725	broad.mit.edu	36	15	29563821	29563821	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130901	exon11	c.G1749A	p.P583P	.	.	.
RASGRP1	10125	broad.mit.edu	36	15	36592332	36592332	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005739	exon7	c.C793T	p.R265C	.	.	.
C15orf53	400359	broad.mit.edu	36	15	36777916	36777916	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207444	exon2	c.C418T	p.R140X	.	.	.
JMJD7-PLA2G4B	8681	broad.mit.edu	36	15	39921031	39921031	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005090	exon12	c.G1153A	p.V385I	.	.	.
SLC24A5	283652	broad.mit.edu	36	15	46200562	46200562	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_205850	exon1	c.C29T	p.A10V	.	.	.
FBN1	2200	broad.mit.edu	36	15	46553757	46553757	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000138	exon34	c.C4197T	p.G1399G	.	.	.
ATP8B4	79895	broad.mit.edu	36	15	48060754	48060754	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024837	exon11	c.G778A	p.G260S	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52379829	52379829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080534	exon11	c.C4234T	p.R1412C	.	.	.
DIS3L	115752	broad.mit.edu	36	15	64393480	64393480	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001143688	exon6	c.G785A	p.R262Q	.	.	.
C15orf60	283677	broad.mit.edu	36	15	71635772	71635772	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042367	exon5	c.C623T	p.T208M	.	.	.
SIN3A	25942	broad.mit.edu	36	15	73471856	73471856	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145358	exon15	c.A2631G	p.R877R	.	.	.
MORF4L1	10933	broad.mit.edu	36	15	76971667	76971667	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006791	exon8	c.C497T	p.P166L	.	.	.
WHAMM	123720	broad.mit.edu	36	15	81296833	81296833	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080435	exon9	c.C2070T	p.C690C	.	.	.
C15orf55	256646	broad.mit.edu	36	15	32435137	32435137	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175741	exon7	c.1552delG	p.G518fs	.	.	.
BBS4	585	broad.mit.edu	36	15	70816938	70816939	+	Frame_Shift_Del	DEL	AA	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	AA	AA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033028	exon16	c.1517_1518del	p.506_506del	.	.	.
SYNM	23336	broad.mit.edu	36	15	97488430	97488430	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015286	exon4	c.2341delG	p.G781fs	.	.	.
WDR90	197335	broad.mit.edu	36	16	646011	646012	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ATF7IP2	80063	broad.mit.edu	36	16	10474868	10474868	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024997	exon8	c.C1458T	p.S486S	.	.	.
MYH11	4629	broad.mit.edu	36	16	15746510	15746510	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040114	exon21	c.C2518T	p.Q840X	.	.	.
HBQ1	3049	broad.mit.edu	36	16	170982	170982	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005331	exon3	c.C304T	p.L102L	.	.	.
ITPRIPL2	162073	broad.mit.edu	36	16	19033454	19033454	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001034841	exon1	c.T170A	p.L57H	.	.	.
PDILT	204474	broad.mit.edu	36	16	20293686	20293686	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_174924	exon5	c.C640T	p.R214C	.	.	.
ACSM2B	348158	broad.mit.edu	36	16	20459556	20459556	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105069	exon13	c.C1550G	p.S517C	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20904252	20904252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017539	exon48	c.G7313A	p.S2438N	.	.	.
PRKCB	5579	broad.mit.edu	36	16	24099741	24099741	+	Silent	SNP	C	T	T	rs17847876	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_212535	exon13	c.C1524T	p.I508I	.	.	.
AQP8	343	broad.mit.edu	36	16	25136223	25136223	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001169	exon2	c.C216T	p.H72H	.	.	.
ZKSCAN2	342357	broad.mit.edu	36	16	25165807	25165807	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012981	exon5	c.A1211G	p.Y404C	.	.	.
GTF3C1	2975	broad.mit.edu	36	16	27380226	27380226	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001520	exon37	c.G6276A	p.R2092R	.	.	.
SEZ6L2	26470	broad.mit.edu	36	16	29814660	29814660	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201575	exon4	c.C534T	p.S178S	.	.	.
CCDC64B	146439	broad.mit.edu	36	16	3020998	3020998	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001103175	exon2	c.G437T	p.R146L	.	.	.
ZNF689	115509	broad.mit.edu	36	16	30523812	30523812	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138447	exon3	c.A777C	p.K259N	.	.	.
SRCAP	10847	broad.mit.edu	36	16	30642456	30642456	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006662	exon25	c.C4210T	p.P1404S	.	.	.
SLX4	84464	broad.mit.edu	36	16	3598569	3598569	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032444	exon2	c.C398T	p.P133L	.	.	.
SHCBP1	79801	broad.mit.edu	36	16	45207463	45207463	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024745	exon4	c.G492T	p.E164D	.	.	.
SEPT12	124404	broad.mit.edu	36	16	4773465	4773465	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144605	exon7	c.G725A	p.R242Q	.	.	.
CBLN1	869	broad.mit.edu	36	16	47872398	47872398	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004352	exon2	c.G321A	p.P107P	.	.	.
SLC12A3	6559	broad.mit.edu	36	16	55475498	55475498	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000339	exon14	c.C1706T	p.A569V	.	.	.
CIAPIN1	57019	broad.mit.edu	36	16	56023921	56023921	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020313	exon6	c.C609T	p.N203N	.	.	.
GPR97	222487	broad.mit.edu	36	16	56264836	56264836	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_170776	exon2	c.G161A	p.C54Y	.	.	.
CDH16	1014	broad.mit.edu	36	16	65506663	65506663	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004062	exon6	c.C544T	p.L182L	.	.	.
B3GNT9	84752	broad.mit.edu	36	16	65741106	65741106	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033309	exon2	c.C784T	p.R262W	.	.	.
CDH1	999	broad.mit.edu	36	16	67403623	67403623	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004360	exon8	c.G1093A	p.V365I	 CDH1,stomach,NS,Substitution - Missense,0 	.	.
DHX38	9785	broad.mit.edu	36	16	70687741	70687741	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014003	exon2	c.C184T	p.R62X	.	.	.
DHX38	9785	broad.mit.edu	36	16	70688314	70688314	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014003	exon3	c.G416A	p.R139Q	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71551076	71551076	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006885	exon2	c.G470T	p.C157F	.	.	.
MON1B	22879	broad.mit.edu	36	16	75785073	75785073	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014940	exon3	c.C373T	p.R125W	.	.	.
MTHFSD	64779	broad.mit.edu	36	16	85145813	85145813	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022764	exon2	c.T59C	p.M20T	.	.	.
C16orf68	79091	broad.mit.edu	36	16	8630141	8630141	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024109	exon3	c.G187T	p.G63X	.	.	.
GALNS	2588	broad.mit.edu	36	16	87429248	87429248	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000512	exon8	c.G772A	p.V258I	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87884635	87884635	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013275	exon6	c.G500A	p.R167H	.	.	.
USP7	7874	broad.mit.edu	36	16	8896449	8896449	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003470	exon28	c.G2979A	p.A993A	.	.	.
ARL2BP	23568	broad.mit.edu	36	16	55836792	55836794	+	In_Frame_Del	DEL	AGA	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	AGA	AGA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012106	exon1	c.12_14del	p.4_5del	.	.	.
ARL2BP	23568	broad.mit.edu	36	16	55843642	55843644	+	In_Frame_Del	DEL	TCT	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	TCT	TCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012106	exon6	c.454_456del	p.152_152del	.	.	.
CCDC79	283847	broad.mit.edu	36	16	65377255	65377255	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136505	exon9	c.635delA	p.N212fs	.	.	.
ZC3H18	124245	broad.mit.edu	36	16	87218642	87218642	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144604	exon12	c.2030delC	p.T677fs	.	.	.
CCDC47	57003	broad.mit.edu	36	17	59197120	59197121	+	Frame_Shift_Ins	INS	-	AG	AG	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020198	exon2	c.148_149insCT	p.V50fs	.	.	.
MYH4	4622	broad.mit.edu	36	17	10294519	10294519	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017533	exon30	c.G4157A	p.R1386H	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11725344	11725344	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001372	exon55	c.G10695A	p.E3565E	.	.	.
YWHAE	7531	broad.mit.edu	36	17	1250123	1250123	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006761	exon1	c.C32T	p.A11V	.	.	.
MYOCD	93649	broad.mit.edu	36	17	12549182	12549182	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001146312	exon2	c.G68T	p.R23I	.	.	.
PRPF8	10594	broad.mit.edu	36	17	1503996	1503996	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006445	exon38	c.G6052A	p.A2018T	.	.	.
SLC13A2	9058	broad.mit.edu	36	17	23840372	23840372	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145975	exon2	c.C116T	p.A39V	.	.	.
KIAA0664	23277	broad.mit.edu	36	17	2548072	2548072	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015229	exon10	c.C1715T	p.P572L	.	.	.
KIAA0664	23277	broad.mit.edu	36	17	2551527	2551527	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015229	exon6	c.G668A	p.W223X	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26220495	26220495	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024857	exon13	c.T3417C	p.T1139T	.	.	.
RHBDL3	162494	broad.mit.edu	36	17	27672112	27672112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138328	exon9	c.C966T	p.A322A	.	.	.
OR1E2	8388	broad.mit.edu	36	17	3283459	3283459	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003554	exon1	c.G427A	p.A143T	.	.	.
MED1	5469	broad.mit.edu	36	17	34824881	34824881	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004774	exon16	c.G1423A	p.V475M	.	.	.
PSMD3	5709	broad.mit.edu	36	17	35396453	35396453	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002809	exon3	c.G511A	p.V171M	.	.	.
THRA	7067	broad.mit.edu	36	17	35498168	35498168	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199334	exon8	c.G871A	p.G291S	.	.	.
TNS4	84951	broad.mit.edu	36	17	35905933	35905933	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032865	exon2	c.C271A	p.P91T	.	.	.
JUP	3728	broad.mit.edu	36	17	37172902	37172902	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021991	exon8	c.G1356A	p.T452T	.	.	.
MPP3	4356	broad.mit.edu	36	17	39234747	39234747	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001932	exon20	c.G1606A	p.A536T	.	.	.
MPP2	4355	broad.mit.edu	36	17	39312819	39312819	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005374	exon11	c.C1210T	p.R404C	.	.	.
ADAM11	4185	broad.mit.edu	36	17	40211122	40211122	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002390	exon25	c.G2262A	p.T754T	.	.	.
NFE2L1	4779	broad.mit.edu	36	17	43491912	43491912	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003204	exon6	c.C2229T	p.A743A	.	.	.
DLX3	1747	broad.mit.edu	36	17	45424043	45424043	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005220	exon3	c.C701T	p.P234L	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45619272	45619272	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000088	exon48	c.G3542A	p.G1181D	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45621143	45621143	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000088	exon42	c.G3058A	p.A1020T	.	.	.
ANKRD40	91369	broad.mit.edu	36	17	46132973	46132973	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052855	exon2	c.C238T	p.P80S	.	.	.
NLRP1	22861	broad.mit.edu	36	17	5364926	5364926	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033004	exon14	c.A3914G	p.K1305R	.	.	.
TEX14	56155	broad.mit.edu	36	17	53998117	53998117	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198393	exon28	c.C4074T	p.G1358G	.	.	.
TEX14	56155	broad.mit.edu	36	17	54031294	54031294	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198393	exon14	c.G2411T	p.G804V	.	.	.
RNFT1	51136	broad.mit.edu	36	17	55395363	55395363	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016125	exon2	c.A121G	p.N41D	.	.	.
RGS9	8787	broad.mit.edu	36	17	60630831	60630831	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003835	exon15	c.C1153T	p.R385C	.	.	.
CACNG4	27092	broad.mit.edu	36	17	62444823	62444823	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014405	exon2	c.G277A	p.D93N	.	.	.
SDK2	54549	broad.mit.edu	36	17	68909821	68909821	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144952	exon19	c.C2539T	p.P847S	.	.	.
NAT9	26151	broad.mit.edu	36	17	70280734	70280734	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015654	exon4	c.C230G	p.A77G	.	.	.
OTOP3	347741	broad.mit.edu	36	17	70449318	70449318	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178233	exon2	c.C309T	p.G103G	.	.	.
DLG4	1742	broad.mit.edu	36	17	7052256	7052256	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001128827	exon2	c.G57A	p.T19T	.	.	.
NUP85	79902	broad.mit.edu	36	17	70732865	70732865	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024844	exon8	c.C670T	p.P224S	.	.	.
SLC2A4	6517	broad.mit.edu	36	17	7130503	7130503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042	exon11	c.C1361T	p.A454V	.	.	.
EVPL	2125	broad.mit.edu	36	17	71530158	71530158	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001988	exon5	c.C537T	p.I179I	.	.	.
KCTD11	147040	broad.mit.edu	36	17	7197187	7197187	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001002914	exon1	c.C202T	p.P68S	.	.	.
RHBDF2	79651	broad.mit.edu	36	17	71979525	71979525	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024599	exon19	c.G2356A	p.A786T	.	.	.
CYTH1	9267	broad.mit.edu	36	17	74187948	74187948	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017456	exon12	c.G1034A	p.R345Q	.	.	.
USP36	57602	broad.mit.edu	36	17	74326426	74326426	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025090	exon10	c.G941A	p.R314H	.	.	.
RNF213	57674	broad.mit.edu	36	17	75936141	75936141	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020914	exon30	c.C9558T	p.R3186R	.	.	.
CSNK1D	1453	broad.mit.edu	36	17	77806637	77806637	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139062	exon3	c.G293T	p.R98M	.	.	.
MYH10	4628	broad.mit.edu	36	17	8319959	8319959	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005964	exon41	c.G5819A	p.R1940Q	.	.	.
MYH10	4628	broad.mit.edu	36	17	8392783	8392783	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005964	exon9	c.G937T	p.G313C	.	.	.
ABR	29	broad.mit.edu	36	17	860763	860763	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021962	exon20	c.C2192A	p.P731Q	.	.	.
PIK3R6	146850	broad.mit.edu	36	17	8682631	8682631	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010855	exon4	c.G164A	p.R55H	.	.	.
MYO15A	51168	broad.mit.edu	36	17	17992572	17992572	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016239	exon31	c.6729delG	p.T2243fs	.	.	.
RHOT1	55288	broad.mit.edu	36	17	27553979	27553979	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001033566	exon15	c.1279delA	p.K427fs	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64814507	64814507	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172232	exon6	c.742delA	p.I248X	.	.	.
THOC1	9984	broad.mit.edu	36	18	255347	255348	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005131	exon3	c.145_146insA	p.C49fs	.	.	.
APCDD1	147495	broad.mit.edu	36	18	10475592	10475592	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153000	exon4	c.G908A	p.R303H	.	.	.
C18orf8	29919	broad.mit.edu	36	18	19340951	19340951	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013326	exon3	c.G199A	p.V67M	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19661335	19661335	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198129	exon23	c.C2729T	p.A910V	.	.	.
RNF138	51444	broad.mit.edu	36	18	27926846	27926846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016271	exon2	c.G109A	p.V37I	.	.	.
CELF4	56853	broad.mit.edu	36	18	33104743	33104743	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025089	exon8	c.T1055C	p.I352T	.	.	.
LIPG	9388	broad.mit.edu	36	18	45355931	45355931	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006033	exon5	c.G766A	p.D256N	.	.	.
MBD1	4152	broad.mit.edu	36	18	46056075	46056075	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015847	exon7	c.C538T	p.R180W	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46858663	46858663	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005359	exon12	c.G1487A	p.R496H	 SMAD4,thyroid,NS,Substitution - Missense,0 	.	.
DCC	1630	broad.mit.edu	36	18	48686643	48686643	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005215	exon3	c.G644A	p.R215Q	.	.	.
C18orf54	162681	broad.mit.edu	36	18	50152868	50152868	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173529	exon6	c.C878A	p.P293H	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54397868	54397868	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052947	exon4	c.T1120C	p.C374R	.	.	.
CDH20	28316	broad.mit.edu	36	18	57372512	57372512	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031891	exon11	c.C2010T	p.G670G	.	.	.
RNF152	220441	broad.mit.edu	36	18	57634529	57634529	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173557	exon2	c.C148T	p.R50W	.	.	.
CNDP2	55748	broad.mit.edu	36	18	70327114	70327114	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018235	exon5	c.G427A	p.A143T	.	.	.
TSHZ1	10194	broad.mit.edu	36	18	71129127	71129127	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005786	exon2	c.G2642T	p.R881M	.	.	.
SALL3	27164	broad.mit.edu	36	18	74854452	74854452	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_171999	exon2	c.G1473A	p.V491V	.	.	.
KIAA0802	23255	broad.mit.edu	36	18	8773876	8773876	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015210	exon6	c.G766A	p.A256T	.	.	.
C18orf19	125228	broad.mit.edu	36	18	13671751	13671751	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152352	exon2	c.326delA	p.K109fs	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46827503	46827504	+	Frame_Shift_Del	DEL	GA	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005359	exon2	c.89_90del	p.30_30del	.	.	.
VASP	7408	broad.mit.edu	36	19	50717451	50717452	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003370	exon6	c.492_493insC	p.A164fs	.	.	.
IL11	3589	broad.mit.edu	36	19	60572042	60572043	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000641	exon2	c.87_88insC	p.P29fs	.	.	.
LDLR	3949	broad.mit.edu	36	19	11071922	11071922	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001195802	exon2	c.G91A	p.D31N	.	.	.
MUM1	84939	broad.mit.edu	36	19	1318212	1318212	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032853	exon9	c.C1418T	p.T473M	.	.	.
OR1I1	126370	broad.mit.edu	36	19	15059536	15059536	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004713	exon1	c.C660T	p.R220R	.	.	.
NOTCH3	4854	broad.mit.edu	36	19	15152543	15152543	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000435	exon19	c.C3091T	p.R1031C	.	.	.
AKAP8	10270	broad.mit.edu	36	19	15326891	15326891	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005858	exon14	c.C1914T	p.G638G	.	.	.
TPM4	7171	broad.mit.edu	36	19	16059892	16059892	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145160	exon5	c.C548T	p.A183V	.	.	.
UPF1	5976	broad.mit.edu	36	19	18829311	18829311	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002911	exon15	c.C2151T	p.Y717Y	.	.	.
HAPLN4	404037	broad.mit.edu	36	19	19232710	19232710	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_023002	exon3	c.C396T	p.N132N	.	.	.
MAU2	23383	broad.mit.edu	36	19	19320985	19320985	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015329	exon15	c.C1380T	p.A460A	.	.	.
MAU2	23383	broad.mit.edu	36	19	19326238	19326238	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015329	exon17	c.G1623A	p.S541S	.	.	.
APLP1	333	broad.mit.edu	36	19	41057510	41057510	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001024807	exon10	c.C1243T	p.R415C	.	.	.
ZNF382	84911	broad.mit.edu	36	19	41810016	41810016	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032825	exon5	c.G1377A	p.T459T	.	.	.
ZNF420	147923	broad.mit.edu	36	19	42310803	42310803	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144689	exon5	c.A1070G	p.H357R	.	.	.
RYR1	6261	broad.mit.edu	36	19	43642982	43642982	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042723	exon20	c.C2488T	p.R830W	.	.	.
PAK4	10298	broad.mit.edu	36	19	44360909	44360909	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001014834	exon8	c.G1167A	p.S389S	.	.	.
MAP3K10	4294	broad.mit.edu	36	19	45390254	45390254	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002446	exon1	c.C476T	p.A159V	.	.	.
NUMBL	9253	broad.mit.edu	36	19	45878757	45878757	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004756	exon6	c.C445T	p.P149S	.	.	.
HNRNPUL1	11100	broad.mit.edu	36	19	46503495	46503495	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144732	exon14	c.A2037T	p.P679P	.	.	.
MEGF8	1954	broad.mit.edu	36	19	47531127	47531127	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001410	exon4	c.C659A	p.A220D	.	.	.
BCL3	602	broad.mit.edu	36	19	49954634	49954634	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005178	exon9	c.C1287T	p.P429P	.	.	.
FOXA3	3171	broad.mit.edu	36	19	51067800	51067800	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004497	exon2	c.G697A	p.G233R	.	.	.
PNMAL1	55228	broad.mit.edu	36	19	51665057	51665057	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018215	exon2	c.C1076T	p.A359V	.	.	.
STRN4	29888	broad.mit.edu	36	19	51917359	51917359	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039877	exon15	c.G2006A	p.R669H	.	.	.
CTU1	90353	broad.mit.edu	36	19	56294198	56294198	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145232	exon3	c.C519T	p.A173A	.	.	.
HAS1	3036	broad.mit.edu	36	19	56912226	56912226	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001523	exon3	c.G735T	p.M245I	.	.	.
ZNF578	147660	broad.mit.edu	36	19	57706279	57706279	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099694	exon6	c.G833A	p.R278H	.	.	.
ZNF611	81856	broad.mit.edu	36	19	57900942	57900942	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001161501	exon5	c.C971T	p.T324I	.	.	.
LENG8	114823	broad.mit.edu	36	19	59661335	59661335	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052925	exon15	c.G2063A	p.R688Q	.	.	.
BRSK1	84446	broad.mit.edu	36	19	60506972	60506972	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032430	exon12	c.C1252T	p.R418X	.	.	.
CCDC106	29903	broad.mit.edu	36	19	60852421	60852421	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013301	exon3	c.G70A	p.D24N	.	.	.
ZNF470	388566	broad.mit.edu	36	19	61780763	61780763	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001668	exon6	c.G1154C	p.R385P	.	.	.
ZNF264	9422	broad.mit.edu	36	19	62414609	62414609	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003417	exon4	c.G332A	p.G111E	.	.	.
CLPP	8192	broad.mit.edu	36	19	6312602	6312602	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006012	exon1	c.T17A	p.L6X	.	.	.
VAV1	7409	broad.mit.edu	36	19	6724006	6724006	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005428	exon1	c.G188A	p.R63H	.	.	.
MUC16	94025	broad.mit.edu	36	19	8866698	8866698	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024690	exon46	c.C39708T	p.D13236D	.	.	.
MUC16	94025	broad.mit.edu	36	19	8879507	8879507	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024690	exon24	c.A37667C	p.K12556T	.	.	.
MUC16	94025	broad.mit.edu	36	19	8919926	8919926	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024690	exon3	c.C28520T	p.T9507M	.	.	.
ZNF317	57693	broad.mit.edu	36	19	9132878	9132878	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001190791	exon6	c.G1461A	p.T487T	.	.	.
ABCA7	10347	broad.mit.edu	36	19	1008947	1008949	+	In_Frame_Del	DEL	CTT	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	CTT	CTT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019112	exon36	c.4914_4916del	p.1638_1639del	.	.	.
OR7C1	26664	broad.mit.edu	36	19	14771414	14771414	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198944	exon1	c.535delT	p.C179fs	.	.	.
ZNF676	163223	broad.mit.edu	36	19	22156163	22156163	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001411	exon3	c.196delA	p.M66X	.	.	.
TLE2	7089	broad.mit.edu	36	19	2962087	2962087	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144762	exon10	c.579delC	p.P193fs	.	.	.
FAM187B	148109	broad.mit.edu	36	19	40407924	40407924	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152481	exon2	c.754delC	p.L252X	.	.	.
PSG3	5671	broad.mit.edu	36	19	47936357	47936357	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021016	exon1	c.20delC	p.P7fs	.	.	.
ERCC2	2068	broad.mit.edu	36	19	50565266	50565268	+	In_Frame_Del	DEL	AGG	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	AGG	AGG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000400	exon2	c.68_70del	p.23_24del	.	.	.
CCDC9	26093	broad.mit.edu	36	19	52466546	52466546	+	Frame_Shift_Del	DEL	C	-	-	rs35119724	byFrequency	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015603	exon12	c.1367delC	p.A456fs	.	.	.
GLTSCR1	29998	broad.mit.edu	36	19	52889380	52889380	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015711	exon8	c.2480delC	p.A827fs	.	.	.
TBC1D17	79735	broad.mit.edu	36	19	55077419	55077419	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001168222	exon6	c.649delC	p.P217fs	.	.	.
EPN1	29924	broad.mit.edu	36	19	60894996	60894996	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130072	exon7	c.827delG	p.W276fs	.	.	.
C3	718	broad.mit.edu	36	19	6645575	6645575	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000064	exon24	c.3021delC	p.P1007fs	.	.	.
PKN2	5586	broad.mit.edu	36	1	89044072	89044073	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
S1PR1	1901	broad.mit.edu	36	1	101477927	101477927	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001400	exon2	c.G799A	p.A267T	.	.	.
KIAA1324	57535	broad.mit.edu	36	1	109535906	109535906	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020775	exon13	c.G1581A	p.T527T	.	.	.
AMIGO1	57463	broad.mit.edu	36	1	109852950	109852950	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020703	exon2	c.C108T	p.A36A	.	.	.
KCNA10	3744	broad.mit.edu	36	1	110862199	110862199	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005549	exon1	c.G734T	p.R245M	.	.	.
MTOR	2475	broad.mit.edu	36	1	11221106	11221106	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004958	exon12	c.G1942A	p.A648T	.	.	.
KCND3	3752	broad.mit.edu	36	1	112326702	112326702	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004980	exon2	c.C170T	p.T57M	.	.	.
CAPZA1	829	broad.mit.edu	36	1	113014263	113014263	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006135	exon10	c.A847G	p.M283V	.	.	.
IGSF3	3321	broad.mit.edu	36	1	116947841	116947841	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001542	exon7	c.C1612T	p.R538W	.	.	.
ADAM30	11085	broad.mit.edu	36	1	120238715	120238715	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021794	exon1	c.G1768T	p.G590C	.	.	.
TNFRSF8	943	broad.mit.edu	36	1	12092775	12092775	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001243	exon6	c.C603A	p.A201A	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143586100	143586100	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198832	exon33	c.A4733T	p.D1578V	.	.	.
TUFT1	7286	broad.mit.edu	36	1	149818785	149818785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020127	exon11	c.G961A	p.A321T	.	.	.
TCHH	7062	broad.mit.edu	36	1	150350642	150350642	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007113	exon2	c.G1675A	p.E559K	.	.	.
LCE1B	353132	broad.mit.edu	36	1	151051666	151051666	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178349	exon1	c.C120A	p.V40V	.	.	.
SPRR1A	6698	broad.mit.edu	36	1	151224536	151224536	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005987	exon2	c.T206C	p.V69A	.	.	.
KAZ	23254	broad.mit.edu	36	1	15255180	15255180	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201628	exon5	c.C733T	p.Q245X	.	.	.
CHRNB2	1141	broad.mit.edu	36	1	152810625	152810625	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000748	exon5	c.G702A	p.P234P	.	.	.
C1orf104	284618	broad.mit.edu	36	1	153557849	153557849	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039517	exon2	c.C55T	p.R19W	.	.	.
IQGAP3	128239	broad.mit.edu	36	1	154798285	154798285	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178229	exon10	c.A1010G	p.Q337R	.	.	.
NES	10763	broad.mit.edu	36	1	154909901	154909901	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006617	exon3	c.C951T	p.G317G	.	.	.
OR6K3	391114	broad.mit.edu	36	1	156953900	156953900	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005327	exon1	c.C630T	p.F210F	.	.	.
IGSF9	57549	broad.mit.edu	36	1	158179414	158179414	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135050	exon3	c.C210T	p.F70F	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158411014	158411014	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144699	exon15	c.G2164T	p.G722C	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158422777	158422777	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144699	exon21	c.G3057A	p.P1019P	.	.	.
NUF2	83540	broad.mit.edu	36	1	161584340	161584340	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031423	exon12	c.G1112A	p.R371H	.	.	.
TADA1	117143	broad.mit.edu	36	1	165105657	165105657	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_053053	exon2	c.C133A	p.L45I	.	.	.
C1orf156	92342	broad.mit.edu	36	1	168029359	168029359	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033418	exon2	c.A102G	p.S34S	.	.	.
TNR	7143	broad.mit.edu	36	1	173599491	173599491	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003285	exon13	c.C2683T	p.R895X	.	.	.
PADI3	51702	broad.mit.edu	36	1	17475609	17475609	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016233	exon12	c.G1316A	p.G439D	.	.	.
ASTN1	460	broad.mit.edu	36	1	175130501	175130501	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004319	exon17	c.C2760T	p.S920S	.	.	.
GLT25D2	23127	broad.mit.edu	36	1	182174720	182174720	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015101	exon12	c.C1679T	p.T560M	.	.	.
CFH	3075	broad.mit.edu	36	1	194915525	194915525	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000186	exon6	c.C769T	p.R257C	.	.	.
LRRN2	10446	broad.mit.edu	36	1	202854568	202854568	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201630	exon2	c.G1176A	p.P392P	.	.	.
LRRN2	10446	broad.mit.edu	36	1	202855609	202855609	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201630	exon2	c.G135A	p.S45S	.	.	.
PM20D1	148811	broad.mit.edu	36	1	204068438	204068438	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152491	exon11	c.T1196A	p.V399D	.	.	.
CAMK1G	57172	broad.mit.edu	36	1	207840067	207840067	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020439	exon3	c.C209T	p.A70V	.	.	.
LAMB3	3914	broad.mit.edu	36	1	207869862	207869862	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001017402	exon9	c.T975C	p.C325C	.	.	.
DDOST	1650	broad.mit.edu	36	1	20853318	20853318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005216	exon7	c.C830T	p.A277V	.	.	.
USH2A	7399	broad.mit.edu	36	1	214486898	214486898	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_206933	exon13	c.G2461A	p.V821I	.	.	.
MARK1	4139	broad.mit.edu	36	1	218901779	218901779	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018650	exon18	c.G2036C	p.S679T	.	.	.
HLX	3142	broad.mit.edu	36	1	219122278	219122278	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021958	exon3	c.C922A	p.Q308K	.	.	.
HSPG2	3339	broad.mit.edu	36	1	22056403	22056403	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005529	exon43	c.G5356A	p.G1786R	.	.	.
EPHX1	2052	broad.mit.edu	36	1	224099586	224099586	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136018	exon9	c.G1283A	p.R428H	.	.	.
GJC2	57165	broad.mit.edu	36	1	226412854	226412854	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020435	exon2	c.G772A	p.V258M	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226534740	226534740	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052843	exon29	c.T7901C	p.V2634A	.	.	.
URB2	9816	broad.mit.edu	36	1	227838747	227838747	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014777	exon4	c.G1764A	p.P588P	.	.	.
NID1	4811	broad.mit.edu	36	1	234243367	234243367	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002508	exon11	c.C2371T	p.P791S	.	.	.
ZP4	57829	broad.mit.edu	36	1	236115332	236115332	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021186	exon8	c.G1142A	p.W381X	.	.	.
FMN2	56776	broad.mit.edu	36	1	238436982	238436982	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020066	exon5	c.G2247A	p.T749T	.	.	.
C1orf101	257044	broad.mit.edu	36	1	242790664	242790664	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173807	exon10	c.G1101C	p.K367N	.	.	.
OR11L1	391189	broad.mit.edu	36	1	246071275	246071275	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001959	exon1	c.C547T	p.P183S	.	.	.
RHCE	6006	broad.mit.edu	36	1	25607913	25607913	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138617	exon2	c.C183T	p.G61G	.	.	.
FAM46B	115572	broad.mit.edu	36	1	27211535	27211535	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052943	exon1	c.G214A	p.G72R	.	.	.
SYTL1	84958	broad.mit.edu	36	1	27552365	27552365	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032872	exon14	c.G1312A	p.V438M	.	.	.
MAP3K6	9064	broad.mit.edu	36	1	27561758	27561758	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004672	exon8	c.G1216A	p.G406R	.	.	.
CD164L2	388611	broad.mit.edu	36	1	27581643	27581643	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207397	exon2	c.G190A	p.V64M	.	.	.
MECR	51102	broad.mit.edu	36	1	29405931	29405931	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001024732	exon4	c.C252T	p.S84S	.	.	.
TSSK3	81629	broad.mit.edu	36	1	32602005	32602005	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052841	exon2	c.G368A	p.R123H	.	.	.
THRAP3	9967	broad.mit.edu	36	1	36524719	36524719	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005119	exon4	c.C301T	p.R101X	.	.	.
THRAP3	9967	broad.mit.edu	36	1	36542078	36542078	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005119	exon12	c.G2741A	p.R914Q	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37040233	37040233	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000831	exon16	c.C2566T	p.R856C	.	.	.
RIMS3	9783	broad.mit.edu	36	1	40880130	40880130	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014747	exon3	c.C55T	p.R19W	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43672693	43672693	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015284	exon26	c.C3157T	p.Q1053X	.	.	.
PTCH2	8643	broad.mit.edu	36	1	45080168	45080168	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166292	exon2	c.C203A	p.A68D	.	.	.
CYP4A22	284541	broad.mit.edu	36	1	47379180	47379180	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010969	exon2	c.G337T	p.D113Y	.	.	.
ZFYVE9	9372	broad.mit.edu	36	1	52476664	52476664	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007324	exon4	c.T987C	p.T329T	.	.	.
ZCCHC11	23318	broad.mit.edu	36	1	52764180	52764180	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001009881	exon2	c.G361A	p.A121T	.	.	.
SLC1A7	6512	broad.mit.edu	36	1	53329029	53329029	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006671	exon8	c.G1069T	p.E357X	.	.	.
C1orf177	163747	broad.mit.edu	36	1	55052096	55052096	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001110533	exon7	c.A784T	p.M262L	.	.	.
JAK1	3716	broad.mit.edu	36	1	65089117	65089117	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002227	exon12	c.C1713T	p.S571S	.	.	.
SLC44A5	204962	broad.mit.edu	36	1	75577864	75577864	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152697	exon4	c.T92A	p.V31D	.	.	.
LMO4	8543	broad.mit.edu	36	1	87577879	87577879	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006769	exon3	c.G309A	p.A103A	.	.	.
GBP4	115361	broad.mit.edu	36	1	89429540	89429540	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052941	exon6	c.C908G	p.T303S	.	.	.
ARHGAP29	9411	broad.mit.edu	36	1	94412221	94412221	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004815	exon23	c.G3578T	p.G1193V	.	.	.
RBM15	64783	broad.mit.edu	36	1	110686274	110686274	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022768	exon1	c.2724delG	p.V908fs	.	.	.
EPHA2	1969	broad.mit.edu	36	1	16334786	16334786	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004431	exon6	c.1379delC	p.P460fs	.	.	.
FAM163A	148753	broad.mit.edu	36	1	178049836	178049836	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173509	exon5	c.393delG	p.E131fs	.	.	.
CEP350	9857	broad.mit.edu	36	1	178319877	178319877	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014810	exon31	c.6226delA	p.K2076fs	.	.	.
PPP1R12B	4660	broad.mit.edu	36	1	200673813	200673813	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001167857	exon10	c.1496delT	p.V499fs	.	.	.
PLEKHA6	22874	broad.mit.edu	36	1	202495034	202495034	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014935	exon8	c.982delG	p.V328fs	.	.	.
HLX	3142	broad.mit.edu	36	1	219124482	219124484	+	In_Frame_Del	DEL	GCG	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	GCG	GCG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021958	exon4	c.1280_1282del	p.427_428del	.	.	.
CHRM3	1131	broad.mit.edu	36	1	238139067	238139067	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000740	exon5	c.1693delA	p.K565fs	.	.	.
OR14I1	401994	broad.mit.edu	36	1	246912228	246912228	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004734	exon1	c.1delA	p.M1fs	.	.	.
RLF	6018	broad.mit.edu	36	1	40469833	40469833	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012421	exon7	c.1005delT	p.T335fs	.	.	.
RPL22	6146	broad.mit.edu	36	1	6169439	6169439	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000983	exon4	c.267delA	p.K89fs	.	.	.
LHX8	431707	broad.mit.edu	36	1	75381522	75381523	+	Frame_Shift_Del	DEL	GA	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001933	exon6	c.521_522del	p.174_174del	.	.	.
ZNF644	84146	broad.mit.edu	36	1	91178920	91178920	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201269	exon3	c.579delA	p.K193fs	.	.	.
NECAB3	63941	broad.mit.edu	36	20	31709462	31709462	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031232	exon11	c.T1109C	p.I370T	.	.	.
SPAG4	6676	broad.mit.edu	36	20	33668503	33668503	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003116	exon2	c.G336A	p.E112E	.	.	.
SPEF1	25876	broad.mit.edu	36	20	3707903	3707903	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015417	exon3	c.G318A	p.P106P	.	.	.
STK4	6789	broad.mit.edu	36	20	43040519	43040519	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006282	exon3	c.A138C	p.K46N	.	.	.
ZNF334	55713	broad.mit.edu	36	20	44566683	44566683	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018102	exon3	c.A125G	p.N42S	.	.	.
NCOA3	8202	broad.mit.edu	36	20	45696211	45696211	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001174087	exon10	c.G977A	p.G326D	.	.	.
RASSF2	9770	broad.mit.edu	36	20	4719236	4719236	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_170774	exon6	c.T398C	p.L133P	.	.	.
SNAI1	6615	broad.mit.edu	36	20	48037932	48037932	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005985	exon3	c.C727T	p.R243W	.	.	.
TMEM189-UBE2V1	387522	broad.mit.edu	36	20	48132737	48132737	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021988	exon4	c.C488T	p.P163L	.	.	.
TSHZ2	128553	broad.mit.edu	36	20	51304247	51304247	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173485	exon2	c.C843T	p.G281G	.	.	.
ZNF217	7764	broad.mit.edu	36	20	51625762	51625762	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006526	exon3	c.T2948C	p.V983A	.	.	.
DOK5	55816	broad.mit.edu	36	20	52693498	52693498	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018431	exon7	c.G830A	p.S277N	.	.	.
TCFL5	10732	broad.mit.edu	36	20	60962013	60962013	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006602	exon2	c.C740T	p.A247V	.	.	.
DIDO1	11083	broad.mit.edu	36	20	60983600	60983600	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193369	exon16	c.T4153C	p.Y1385H	.	.	.
DIDO1	11083	broad.mit.edu	36	20	61009146	61009146	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022105	exon5	c.C1172T	p.A391V	.	.	.
N6AMT1	29104	broad.mit.edu	36	21	29176411	29176411	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182749	exon3	c.G254A	p.C85Y	.	.	.
KRTAP24-1	643803	broad.mit.edu	36	21	30576858	30576858	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001085455	exon1	c.G264A	p.P88P	.	.	.
DOPEY2	9980	broad.mit.edu	36	21	36574514	36574514	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005128	exon31	c.A6031G	p.N2011D	.	.	.
BRWD1	54014	broad.mit.edu	36	21	39530498	39530498	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033656	exon23	c.C2659T	p.R887X	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40345891	40345891	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001389	exon30	c.G5049A	p.T1683T	.	.	.
PRDM15	63977	broad.mit.edu	36	21	42164798	42164798	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022115	exon4	c.T415C	p.S139P	.	.	.
UMODL1	89766	broad.mit.edu	36	21	42420890	42420890	+	De_novo_Start_InFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199527	exon19	c.C3738T	p.N1246N	.	.	.
ADARB1	104	broad.mit.edu	36	21	45427028	45427028	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015834	exon6	c.C1179T	p.C393C	.	.	.
TPTE	7179	broad.mit.edu	36	21	9973153	9973153	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199259	exon9	c.C376T	p.R126X	 TPTE,breast,NS,Substitution - Missense,+1 	.	.
CACNG2	10369	broad.mit.edu	36	22	35290349	35290350	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006078	exon4	c.967_968insC	p.V323fs	.	.	.
OR11H1	81061	broad.mit.edu	36	22	14829559	14829559	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005239	exon1	c.C246A	p.S82S	.	.	.
CCT8L2	150160	broad.mit.edu	36	22	15452856	15452856	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014406	exon1	c.C585T	p.D195D	.	.	.
XKR3	150165	broad.mit.edu	36	22	15645116	15645116	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175878	exon4	c.C773T	p.A258V	.	.	.
GAB4	128954	broad.mit.edu	36	22	15825746	15825746	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001037814	exon8	c.C1386A	p.T462T	.	.	.
LZTR1	8216	broad.mit.edu	36	22	19676606	19676606	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006767	exon10	c.G1097A	p.G366D	.	.	.
LZTR1	8216	broad.mit.edu	36	22	19681533	19681533	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006767	exon21	c.C2419T	p.P807S	.	.	.
GSTT1	2952	broad.mit.edu	36	22	22714226	22714226	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000853	exon1	c.C6T	p.G2G	.	.	.
SGSM1	129049	broad.mit.edu	36	22	23585786	23585786	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001098497	exon9	c.G905A	p.G302E	.	.	.
TPST2	8459	broad.mit.edu	36	22	25262286	25262286	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008566	exon4	c.C1009A	p.P337T	.	.	.
AP1B1	162	broad.mit.edu	36	22	28085936	28085936	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166019	exon4	c.C156T	p.P52P	.	.	.
EIF4ENIF1	56478	broad.mit.edu	36	22	30174168	30174168	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019843	exon13	c.C1819T	p.R607C	.	.	.
RASD2	23551	broad.mit.edu	36	22	34272848	34272848	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014310	exon2	c.G46A	p.A16T	.	.	.
NCF4	4689	broad.mit.edu	36	22	35593388	35593388	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013416	exon4	c.T280G	p.Y94D	.	.	.
IL2RB	3560	broad.mit.edu	36	22	35868449	35868449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000878	exon4	c.G253A	p.A85T	.	.	.
C22orf23	84645	broad.mit.edu	36	22	36679024	36679024	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032561	exon2	c.C79A	p.P27T	.	.	.
ADSL	158	broad.mit.edu	36	22	39088981	39088981	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000026	exon10	c.C1061T	p.T354M	.	.	.
L3MBTL2	83746	broad.mit.edu	36	22	39935835	39935835	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031488	exon2	c.C214T	p.L72F	.	.	.
A4GALT	53947	broad.mit.edu	36	22	41419080	41419080	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017436	exon3	c.C822T	p.R274R	.	.	.
FAM118A	55007	broad.mit.edu	36	22	44102559	44102559	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001104595	exon5	c.G473A	p.R158Q	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191963281	191963282	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130158	exon18	c.1800_1801insA	p.D600fs	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228568644	228568645	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142644	exon8	c.4459_4460insT	p.D1487_T1488delinsX	.	.	.
LONRF2	164832	broad.mit.edu	36	2	100269870	100269870	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198461	exon11	c.C2008T	p.R670C	.	.	.
CHST10	9486	broad.mit.edu	36	2	100380954	100380954	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004854	exon5	c.G275T	p.C92F	.	.	.
SLC9A2	6549	broad.mit.edu	36	2	102648232	102648232	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003048	exon3	c.G995A	p.G332D	.	.	.
GCC2	9648	broad.mit.edu	36	2	108482532	108482532	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181453	exon22	c.A4874C	p.Q1625P	.	.	.
DPP10	57628	broad.mit.edu	36	2	116265207	116265207	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178036	exon19	c.C1462A	p.L488I	.	.	.
SCTR	6344	broad.mit.edu	36	2	119968510	119968510	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002980	exon2	c.C157T	p.Q53X	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133199767	133199767	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207481	exon17	c.C1659T	p.S553S	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137530536	137530536	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080427	exon2	c.C123T	p.D41D	.	.	.
RIF1	55183	broad.mit.edu	36	2	151981371	151981371	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001177664	exon5	c.T331C	p.S111P	.	.	.
NR4A2	4929	broad.mit.edu	36	2	156893290	156893290	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006186	exon4	c.G866A	p.R289H	.	.	.
DPP4	1803	broad.mit.edu	36	2	162583554	162583554	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001935	exon16	c.C1351T	p.P451S	.	.	.
OSBPL6	114880	broad.mit.edu	36	2	178968430	178968430	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032523	exon25	c.T2703C	p.V901V	.	.	.
DFNB59	494513	broad.mit.edu	36	2	179031587	179031587	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042702	exon5	c.G654C	p.L218L	.	.	.
OSGEPL1	64172	broad.mit.edu	36	2	190327152	190327152	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022353	exon4	c.C774T	p.H258H	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196560044	196560044	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018897	exon14	c.T1745C	p.V582A	.	.	.
GTF3C3	9330	broad.mit.edu	36	2	197366009	197366009	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012086	exon3	c.G327A	p.E109E	.	.	.
AOX1	316	broad.mit.edu	36	2	201159088	201159088	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001159	exon1	c.G12A	p.A4A	.	.	.
FZD7	8324	broad.mit.edu	36	2	202608326	202608326	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003507	exon1	c.C711T	p.G237G	.	.	.
NRP2	8828	broad.mit.edu	36	2	206318787	206318787	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201266	exon10	c.C1714T	p.R572W	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206882725	206882725	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020923	exon5	c.C5228T	p.P1743L	.	.	.
IGFBP5	3488	broad.mit.edu	36	2	217267708	217267708	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000599	exon1	c.C36T	p.A12A	.	.	.
TNS1	7145	broad.mit.edu	36	2	218391514	218391514	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022648	exon24	c.G3474A	p.P1158P	.	.	.
ZNF142	7701	broad.mit.edu	36	2	219221935	219221935	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105537	exon6	c.C940T	p.R314W	.	.	.
PTPRN	5798	broad.mit.edu	36	2	219869462	219869462	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199764	exon17	c.G2061A	p.M687I	.	.	.
PTPRN	5798	broad.mit.edu	36	2	219873195	219873195	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199764	exon9	c.A922G	p.T308A	.	.	.
SLC4A3	6508	broad.mit.edu	36	2	220212622	220212622	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005070	exon20	c.C3198T	p.A1066A	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225343219	225343219	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014689	exon55	c.C6397T	p.H2133Y	.	.	.
SP140	11262	broad.mit.edu	36	2	230842883	230842883	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007237	exon14	c.C1415T	p.T472M	.	.	.
DNAJB3	414061	broad.mit.edu	36	2	234317210	234317210	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001394	exon1	c.A92G	p.H31R	.	.	.
ASB18	401036	broad.mit.edu	36	2	236837572	236837572	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_212556	exon1	c.C156T	p.D52D	.	.	.
MFSD2B	388931	broad.mit.edu	36	2	24100066	24100066	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080473	exon12	c.G1279A	p.A427T	.	.	.
MEMO1	51072	broad.mit.edu	36	2	32010648	32010648	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015955	exon3	c.G204A	p.P68P	.	.	.
COLEC11	78989	broad.mit.edu	36	2	3669284	3669284	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199235	exon8	c.C508T	p.R170C	.	.	.
FAM82A1	151393	broad.mit.edu	36	2	38055886	38055886	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001170793	exon3	c.C220T	p.R74X	.	.	.
SLC8A1	6546	broad.mit.edu	36	2	40510789	40510789	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001112800	exon1	c.A136G	p.T46A	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50553050	50553050	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135659	exon17	c.C3254A	p.A1085D	.	.	.
PAPOLG	64895	broad.mit.edu	36	2	60863814	60863814	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022894	exon13	c.G1132A	p.A378T	.	.	.
VPS54	51542	broad.mit.edu	36	2	64023129	64023129	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016516	exon11	c.T1372C	p.F458L	.	.	.
VAMP5	10791	broad.mit.edu	36	2	85673711	85673711	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006634	exon3	c.G271A	p.V91I	.	.	.
ASAP2	8853	broad.mit.edu	36	2	9458407	9458407	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135191	exon25	c.G2685A	p.Q895Q	.	.	.
CPSF3	51692	broad.mit.edu	36	2	9528974	9528974	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016207	exon17	c.C1908T	p.S636S	.	.	.
SNRNP200	23020	broad.mit.edu	36	2	96304554	96304554	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014014	exon45	c.G6334A	p.A2112T	.	.	.
KIAA1310	55683	broad.mit.edu	36	2	96648986	96648986	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001115016	exon5	c.G500A	p.R167H	.	.	.
AFF3	3899	broad.mit.edu	36	2	99548471	99548471	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025108	exon19	c.C3104A	p.S1035X	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141529253	141529253	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018557	exon10	c.1454delG	p.G485fs	.	.	.
PXDN	7837	broad.mit.edu	36	2	1631991	1631991	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012293	exon17	c.2568delC	p.P856fs	.	.	.
TTN	7273	broad.mit.edu	36	2	179252334	179252334	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133378	exon139	c.29987delA	p.K9996fs	.	.	.
PMS1	5378	broad.mit.edu	36	2	190427646	190427646	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000534	exon9	c.1403delA	p.E468fs	.	.	.
PARD3B	117583	broad.mit.edu	36	2	205874543	205874543	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_057177	exon17	c.2296delA	p.K766fs	.	.	.
CNGA3	1261	broad.mit.edu	36	2	98379176	98379176	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001298	exon8	c.1111delC	p.P371fs	.	.	.
ATP2B2	491	broad.mit.edu	36	3	10362721	10362721	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001683	exon14	c.C2370T	p.F790F	.	.	.
DZIP3	9666	broad.mit.edu	36	3	109877352	109877352	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014648	exon25	c.C2723T	p.A908V	.	.	.
CD200R1	131450	broad.mit.edu	36	3	114132649	114132649	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138939	exon3	c.G196A	p.A66T	.	.	.
BOC	91653	broad.mit.edu	36	3	114474805	114474805	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033254	exon8	c.C1161A	p.G387G	.	.	.
GSK3B	2932	broad.mit.edu	36	3	121203618	121203618	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002093	exon2	c.G247A	p.A83T	.	.	.
KPNA1	3836	broad.mit.edu	36	3	123653151	123653151	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002264	exon8	c.C673T	p.R225C	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130788159	130788159	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015103	exon3	c.G1582A	p.A528T	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131765008	131765008	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001102608	exon2	c.C471T	p.D157D	.	.	.
ASTE1	28990	broad.mit.edu	36	3	132220141	132220141	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014065	exon4	c.A1412G	p.Y471C	.	.	.
NUP210	23225	broad.mit.edu	36	3	13368384	13368384	+	Missense_Mutation	SNP	C	T	T	rs433032	byCluster;byHapMap	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024923	exon20	c.G2830A	p.A944T	.	.	.
RYK	6259	broad.mit.edu	36	3	135360794	135360794	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002958	exon14	c.G1687T	p.A563S	.	.	.
TXNDC6	347736	broad.mit.edu	36	3	139519724	139519724	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178130	exon6	c.G157A	p.E53K	.	.	.
PLCH1	23007	broad.mit.edu	36	3	156694878	156694878	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130960	exon15	c.C1981T	p.R661C	.	.	.
GHSR	2693	broad.mit.edu	36	3	173648311	173648311	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198407	exon1	c.A587T	p.N196I	.	.	.
TTC14	151613	broad.mit.edu	36	3	181805042	181805042	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133462	exon5	c.T654C	p.G218G	.	.	.
DNAJB11	51726	broad.mit.edu	36	3	187781896	187781896	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016306	exon5	c.C499T	p.R167W	.	.	.
ATP13A5	344905	broad.mit.edu	36	3	194522303	194522303	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198505	exon16	c.C1776A	p.I592I	.	.	.
LRRC15	131578	broad.mit.edu	36	3	195561394	195561394	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130830	exon2	c.C1674T	p.C558C	.	.	.
MUC4	4585	broad.mit.edu	36	3	196973436	196973436	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138297	exon14	c.C1977T	p.N659N	.	.	.
TNK2	10188	broad.mit.edu	36	3	197099757	197099757	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005781	exon2	c.C100T	p.R34C	 TNK2,lung,NS,Substitution - Missense,+1 	.	.
TFRC	7037	broad.mit.edu	36	3	197263401	197263401	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003234	exon19	c.C2092T	p.R698X	.	.	.
SLC4A7	9497	broad.mit.edu	36	3	27406535	27406535	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003615	exon22	c.G3224A	p.R1075H	.	.	.
CNTN4	152330	broad.mit.edu	36	3	2836264	2836264	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175607	exon6	c.A453G	p.G151G	.	.	.
CMTM7	112616	broad.mit.edu	36	3	32470744	32470744	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138410	exon5	c.C522T	p.A174A	.	.	.
ACVR2B	93	broad.mit.edu	36	3	38496175	38496175	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001106	exon7	c.C813A	p.G271G	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38566896	38566896	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099405	exon27	c.C5917T	p.R1973W	.	.	.
C3orf39	84892	broad.mit.edu	36	3	43097709	43097709	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032806	exon2	c.G219A	p.T73T	.	.	.
ZNF35	7584	broad.mit.edu	36	3	44667635	44667635	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003420	exon2	c.A72G	p.E24E	.	.	.
ZNF502	91392	broad.mit.edu	36	3	44736800	44736800	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033210	exon3	c.G43T	p.E15X	.	.	.
DHX30	22907	broad.mit.edu	36	3	47863071	47863071	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138615	exon11	c.G1505T	p.R502L	.	.	.
UQCRC1	7384	broad.mit.edu	36	3	48611573	48611573	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003365	exon13	c.C1435T	p.R479C	.	.	.
CDHR4	389118	broad.mit.edu	36	3	49811433	49811433	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001007540	exon3	c.C401A	p.P134Q	.	.	.
SLC38A3	10991	broad.mit.edu	36	3	50229905	50229905	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006841	exon9	c.T686C	p.I229T	.	.	.
ALAS1	211	broad.mit.edu	36	3	52211779	52211779	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000688	exon4	c.C416T	p.A139V	.	.	.
NISCH	11188	broad.mit.edu	36	3	52500460	52500460	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007184	exon20	c.G3795A	p.T1265T	.	.	.
ACTR8	93973	broad.mit.edu	36	3	53887446	53887446	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022899	exon3	c.G383A	p.R128H	.	.	.
PSMD6	9861	broad.mit.edu	36	3	63983091	63983091	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014814	exon2	c.C294T	p.S98S	.	.	.
C3orf64	285203	broad.mit.edu	36	3	69140290	69140290	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173654	exon5	c.G290A	p.C97Y	.	.	.
SETD5	55209	broad.mit.edu	36	3	9457197	9457197	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080517	exon8	c.C625T	p.R209W	.	.	.
MECOM	2122	broad.mit.edu	36	3	170316254	170316254	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105077	exon8	c.1731delT	p.F577fs	.	.	.
EOMES	8320	broad.mit.edu	36	3	27733758	27733758	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005442	exon6	c.1868delC	p.P623fs	.	.	.
GSTCD	79807	broad.mit.edu	36	4	106986150	106986151	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001031720	exon12	c.1869_1870insA	p.P623fs	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183950566	183950567	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080477	exon25	c.5747_5748insC	p.N1916fs	.	.	.
ZNF518B	85460	broad.mit.edu	36	4	10054756	10054756	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_053042	exon3	c.T2295C	p.H765H	.	.	.
PPA2	27068	broad.mit.edu	36	4	106578602	106578602	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_176869	exon6	c.G482A	p.C161Y	.	.	.
SGMS2	166929	broad.mit.edu	36	4	109040185	109040185	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136257	exon3	c.T461C	p.I154T	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123360082	123360082	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015312	exon19	c.T2385G	p.G795G	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123391129	123391129	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015312	exon35	c.G5873A	p.R1958Q	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123394822	123394822	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015312	exon36	c.A5945C	p.D1982A	.	.	.
FAT4	79633	broad.mit.edu	36	4	126459761	126459761	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024582	exon1	c.C2745A	p.A915A	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134292455	134292455	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032961	exon1	c.C1710T	p.N570N	.	.	.
DCLK2	166614	broad.mit.edu	36	4	151243116	151243116	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040260	exon2	c.G458A	p.R153H	.	.	.
LRBA	987	broad.mit.edu	36	4	151406351	151406351	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006726	exon58	c.G8565A	p.W2855X	.	.	.
FGA	2243	broad.mit.edu	36	4	155730116	155730116	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021871	exon2	c.C103T	p.R35C	.	.	.
NPY2R	4887	broad.mit.edu	36	4	156355623	156355623	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000910	exon2	c.A1082C	p.K361T	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156851316	156851316	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130682	exon6	c.C549A	p.G183G	.	.	.
RAPGEF2	9693	broad.mit.edu	36	4	160483987	160483987	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014247	exon16	c.G2752A	p.A918T	.	.	.
CPE	1363	broad.mit.edu	36	4	166520037	166520037	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001873	exon1	c.G214A	p.A72T	.	.	.
ANXA10	11199	broad.mit.edu	36	4	169285813	169285813	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007193	exon2	c.C22T	p.Q8X	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183872333	183872333	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080477	exon12	c.A2321G	p.D774G	.	.	.
HELT	391723	broad.mit.edu	36	4	186178622	186178622	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029887	exon4	c.A686T	p.D229V	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35907052	35907052	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015230	exon2	c.G452A	p.R151H	.	.	.
ADRA2C	152	broad.mit.edu	36	4	3738785	3738785	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000683	exon1	c.C654A	p.S218S	.	.	.
TMEM156	80008	broad.mit.edu	36	4	38710280	38710280	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024943	exon1	c.T49C	p.F17L	.	.	.
GABRG1	2565	broad.mit.edu	36	4	45737779	45737779	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173536	exon9	c.G1381T	p.G461C	.	.	.
FRYL	285527	broad.mit.edu	36	4	48207743	48207743	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015030	exon58	c.T8161C	p.F2721L	.	.	.
C4orf6	10141	broad.mit.edu	36	4	5578916	5578916	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005750	exon2	c.G239A	p.S80N	.	.	.
TMEM165	55858	broad.mit.edu	36	4	55985511	55985511	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018475	exon5	c.C842T	p.T281M	.	.	.
CRMP1	1400	broad.mit.edu	36	4	5889421	5889421	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001313	exon10	c.G1082A	p.R361Q	.	.	.
JAKMIP1	152789	broad.mit.edu	36	4	6082398	6082398	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099433	exon20	c.A2391G	p.E797E	.	.	.
KIAA0232	9778	broad.mit.edu	36	4	6916619	6916619	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014743	exon7	c.A3609G	p.S1203S	.	.	.
GRPEL1	80273	broad.mit.edu	36	4	7113534	7113534	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025196	exon4	c.C610T	p.R204C	.	.	.
PPEF2	5470	broad.mit.edu	36	4	77016622	77016622	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006239	exon11	c.C1162T	p.R388W	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79407476	79407476	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025074	exon9	c.G847A	p.G283R	.	.	.
ABLIM2	84448	broad.mit.edu	36	4	8140875	8140875	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130083	exon4	c.C375T	p.N125N	.	.	.
ACOX3	8310	broad.mit.edu	36	4	8444985	8444985	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003501	exon11	c.G1275A	p.A425A	.	.	.
HELQ	113510	broad.mit.edu	36	4	84569916	84569916	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133636	exon12	c.C2303T	p.T768M	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87950095	87950095	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080684	exon43	c.C6660T	p.G2220G	.	.	.
SPARCL1	8404	broad.mit.edu	36	4	88635172	88635172	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001128310	exon4	c.C186T	p.D62D	.	.	.
COL25A1	84570	broad.mit.edu	36	4	109986771	109986771	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198721	exon27	c.1488delA	p.K496fs	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123502851	123502851	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015312	exon84	c.15017delA	p.X5006X	.	.	.
SEL1L3	23231	broad.mit.edu	36	4	25458356	25458356	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015187	exon2	c.391delA	p.R131fs	.	.	.
UGT2A1	10941	broad.mit.edu	36	4	70547662	70547662	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006798	exon1	c.290delA	p.N97fs	.	.	.
GAK	2580	broad.mit.edu	36	4	835648	835648	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005255	exon25	c.3398delC	p.P1133fs	.	.	.
EGFLAM	133584	broad.mit.edu	36	5	38442948	38442949	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182798	exon3	c.388_389insG	p.W130fs	.	.	.
PPIP5K2	23262	broad.mit.edu	36	5	102497139	102497139	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015216	exon2	c.G198C	p.R66R	.	.	.
MCC	4163	broad.mit.edu	36	5	112514963	112514963	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001085377	exon4	c.G683A	p.R228H	.	.	.
COMMD10	51397	broad.mit.edu	36	5	115655172	115655172	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016144	exon6	c.G570T	p.K190N	.	.	.
KIF20A	10112	broad.mit.edu	36	5	137550751	137550751	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005733	exon19	c.C2423T	p.A808V	.	.	.
TMCO6	55374	broad.mit.edu	36	5	140002791	140002791	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018502	exon7	c.C787T	p.L263F	.	.	.
PCDHA2	56146	broad.mit.edu	36	5	140155301	140155301	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018905	exon1	c.G568A	p.E190K	.	.	.
PCDHA9	9752	broad.mit.edu	36	5	140208409	140208409	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014005	exon1	c.G145A	p.A49T	.	.	.
PCDHA10	56139	broad.mit.edu	36	5	140217093	140217093	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031860	exon1	c.G1276A	p.A426T	.	.	.
PCDHB2	56133	broad.mit.edu	36	5	140455699	140455699	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018936	exon1	c.G1141A	p.G381R	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140691642	140691642	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031993	exon1	c.C1207T	p.R403C	.	.	.
PCDHGA5	56110	broad.mit.edu	36	5	140724518	140724518	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032054	exon1	c.C437T	p.A146V	.	.	.
PCDH12	51294	broad.mit.edu	36	5	141315448	141315448	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016580	exon1	c.C2153T	p.T718M	.	.	.
PCDH12	51294	broad.mit.edu	36	5	141316799	141316799	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016580	exon1	c.G802A	p.A268T	.	.	.
SH3TC2	79628	broad.mit.edu	36	5	148366801	148366801	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024577	exon16	c.C3511T	p.R1171C	.	.	.
PDGFRB	5159	broad.mit.edu	36	5	149495534	149495534	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002609	exon3	c.C141T	p.S47S	.	.	.
GALNT10	55568	broad.mit.edu	36	5	153654665	153654665	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198321	exon2	c.C256T	p.R86C	.	.	.
SLIT3	6586	broad.mit.edu	36	5	168553131	168553131	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003062	exon4	c.C343T	p.R115C	.	.	.
TLX3	30012	broad.mit.edu	36	5	170669931	170669931	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021025	exon2	c.G594A	p.A198A	.	.	.
HRH2	3274	broad.mit.edu	36	5	175043197	175043197	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022304	exon1	c.G355A	p.A119T	.	.	.
FGFR4	2264	broad.mit.edu	36	5	176455682	176455682	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_213647	exon14	c.G1840T	p.A614S	.	.	.
ZNF354A	6940	broad.mit.edu	36	5	178071998	178071998	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005649	exon5	c.G1487A	p.C496Y	.	.	.
FLT4	2324	broad.mit.edu	36	5	179970955	179970955	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182925	exon27	c.G3668A	p.R1223H	.	.	.
CDH6	1004	broad.mit.edu	36	5	31349273	31349273	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004932	exon8	c.G1345T	p.E449X	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32126321	32126321	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178140	exon19	c.A7010G	p.Q2337R	.	.	.
RXFP3	51289	broad.mit.edu	36	5	33973191	33973191	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016568	exon1	c.G589A	p.G197S	.	.	.
C6	729	broad.mit.edu	36	5	41185273	41185273	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000065	exon17	c.A2450C	p.K817T	.	.	.
ACTBL2	345651	broad.mit.edu	36	5	56813544	56813544	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001017992	exon1	c.A748G	p.T250A	.	.	.
GFM2	84340	broad.mit.edu	36	5	74061968	74061968	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032380	exon17	c.T1599C	p.C533C	.	.	.
CKMT2	1160	broad.mit.edu	36	5	80584328	80584328	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001825	exon4	c.G211A	p.A71T	.	.	.
ACOT12	134526	broad.mit.edu	36	5	80691489	80691489	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130767	exon5	c.G485A	p.S162N	.	.	.
CHD1	1105	broad.mit.edu	36	5	98240087	98240087	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001270	exon23	c.G3313A	p.E1105K	.	.	.
CSF1R	1436	broad.mit.edu	36	5	149430302	149430302	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005211	exon8	c.1108delC	p.R370fs	.	.	.
CDH10	1008	broad.mit.edu	36	5	24523590	24523590	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006727	exon12	c.2306delG	p.G769fs	.	.	.
TNPO1	3842	broad.mit.edu	36	5	72235301	72235301	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153188	exon23	c.2500delT	p.F834fs	.	.	.
ROS1	6098	broad.mit.edu	36	6	117822094	117822095	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002944	exon10	c.1088_1089insT	p.Y363fs	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143136950	143136951	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006734	exon5	c.619_620insA	p.H207fs	.	.	.
HACE1	57531	broad.mit.edu	36	6	105351252	105351252	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020771	exon9	c.A787G	p.T263A	.	.	.
EYA4	2070	broad.mit.edu	36	6	133827675	133827675	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172103	exon9	c.A721G	p.S241G	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143124331	143124331	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006734	exon8	c.A5583G	p.S1861S	.	.	.
PHACTR2	9749	broad.mit.edu	36	6	144146093	144146093	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100165	exon9	c.C1450T	p.R484C	.	.	.
SASH1	23328	broad.mit.edu	36	6	148895730	148895730	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015278	exon14	c.G1669A	p.G557R	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151714304	151714304	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005100	exon4	c.G3085A	p.V1029I	.	.	.
RBM16	22828	broad.mit.edu	36	6	155195809	155195809	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014892	exon20	c.G3404A	p.G1135D	.	.	.
NOX3	50508	broad.mit.edu	36	6	155759780	155759780	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015718	exon13	c.T1589C	p.I530T	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159573788	159573788	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032532	exon11	c.G2254A	p.A752T	.	.	.
MAP3K4	4216	broad.mit.edu	36	6	161425594	161425594	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006724	exon7	c.A2327G	p.E776G	.	.	.
RPS6KA2	6196	broad.mit.edu	36	6	166822381	166822381	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021135	exon10	c.G837A	p.P279P	.	.	.
NUP153	9972	broad.mit.edu	36	6	17737350	17737350	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005124	exon18	c.C3059A	p.A1020E	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17963823	17963823	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022113	exon6	c.G318A	p.S106S	.	.	.
HIST1H2BE	8344	broad.mit.edu	36	6	26292181	26292181	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003523	exon1	c.T179C	p.M60T	.	.	.
ZKSCAN3	80317	broad.mit.edu	36	6	28441710	28441710	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024493	exon6	c.G1286A	p.S429N	.	.	.
TRIM10	10107	broad.mit.edu	36	6	30236251	30236251	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006778	exon1	c.C364T	p.R122W	.	.	.
LST1	7940	broad.mit.edu	36	6	31664289	31664289	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007161	exon4	c.G172T	p.E58X	.	.	.
C6orf25	80739	broad.mit.edu	36	6	31799553	31799553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138272	exon2	c.G220A	p.V74M	.	.	.
MSH5	4439	broad.mit.edu	36	6	31829336	31829336	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025259	exon12	c.G1016A	p.R339H	.	.	.
HSPA1L	3305	broad.mit.edu	36	6	31885862	31885862	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005527	exon2	c.G1867A	p.G623R	.	.	.
EGFL8	80864	broad.mit.edu	36	6	32242478	32242478	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030652	exon4	c.C247T	p.R83W	.	.	.
NOTCH4	4855	broad.mit.edu	36	6	32278025	32278025	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004557	exon21	c.G3561T	p.G1187G	.	.	.
PSMB9	5698	broad.mit.edu	36	6	32934162	32934162	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002800	exon5	c.C434T	p.A145V	.	.	.
BRD2	6046	broad.mit.edu	36	6	33052455	33052455	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005104	exon7	c.C964T	p.R322C	.	.	.
BRD2	6046	broad.mit.edu	36	6	33053626	33053626	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005104	exon9	c.A1444G	p.S482G	.	.	.
COL11A2	1302	broad.mit.edu	36	6	33241496	33241496	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080681	exon61	c.C4300T	p.R1434C	.	.	.
SCUBE3	222663	broad.mit.edu	36	6	35319367	35319367	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152753	exon16	c.C1928T	p.T643M	.	.	.
DEF6	50619	broad.mit.edu	36	6	35395429	35395429	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022047	exon8	c.C1366T	p.R456X	.	.	.
TULP1	7287	broad.mit.edu	36	6	35581845	35581845	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003322	exon10	c.G912A	p.T304T	.	.	.
FGD2	221472	broad.mit.edu	36	6	37087491	37087491	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173558	exon4	c.G410A	p.R137H	.	.	.
TSPO2	222642	broad.mit.edu	36	6	41119838	41119838	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010873	exon4	c.C497T	p.T166M	.	.	.
FOXP4	116113	broad.mit.edu	36	6	41665775	41665775	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012426	exon11	c.G1246A	p.A416T	.	.	.
TTBK1	84630	broad.mit.edu	36	6	43330829	43330829	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032538	exon7	c.G641A	p.R214Q	.	.	.
PGK2	5232	broad.mit.edu	36	6	49861672	49861672	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138733	exon1	c.C1188T	p.G396G	.	.	.
PGK2	5232	broad.mit.edu	36	6	49862550	49862550	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138733	exon1	c.G310T	p.V104L	.	.	.
TFAP2D	83741	broad.mit.edu	36	6	50791170	50791170	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172238	exon2	c.G422A	p.R141H	.	.	.
TFAP2B	7021	broad.mit.edu	36	6	50904351	50904351	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003221	exon3	c.G601T	p.V201F	.	.	.
DST	667	broad.mit.edu	36	6	56570637	56570637	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015548	exon28	c.G4186A	p.G1396R	.	.	.
BAI3	577	broad.mit.edu	36	6	70091558	70091558	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001704	exon21	c.C2888G	p.A963G	.	.	.
BAI3	577	broad.mit.edu	36	6	70122435	70122435	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001704	exon28	c.C3557A	p.T1186K	.	.	.
LMBRD1	55788	broad.mit.edu	36	6	70557012	70557012	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018368	exon2	c.T143C	p.I48T	.	.	.
RIMS1	22999	broad.mit.edu	36	6	72948788	72948788	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014989	exon6	c.C893T	p.A298V	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75905263	75905263	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004370	exon28	c.A5092T	p.M1698L	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75918446	75918446	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004370	exon20	c.G3857A	p.R1286H	.	.	.
SNX14	57231	broad.mit.edu	36	6	86284219	86284219	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020468	exon20	c.A2083G	p.S695G	.	.	.
MDN1	23195	broad.mit.edu	36	6	90472592	90472592	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014611	exon53	c.C8055T	p.V2685V	.	.	.
MDN1	23195	broad.mit.edu	36	6	90479187	90479187	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014611	exon48	c.C7258T	p.R2420X	.	.	.
MDN1	23195	broad.mit.edu	36	6	90481103	90481103	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014611	exon46	c.G6949T	p.D2317Y	.	.	.
MICAL1	64780	broad.mit.edu	36	6	109874637	109874637	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001159291	exon17	c.2001delG	p.Q667fs	.	.	.
CCDC28A	25901	broad.mit.edu	36	6	139139023	139139023	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015439	exon2	c.343delA	p.K115fs	.	.	.
FBXO5	26271	broad.mit.edu	36	6	153335175	153335175	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012177	exon4	c.1017delA	p.K339fs	.	.	.
MYO6	4646	broad.mit.edu	36	6	76656578	76656578	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004999	exon26	c.2743delA	p.K915fs	.	.	.
TPBG	7162	broad.mit.edu	36	6	83131616	83131617	+	Frame_Shift_Del	DEL	CA	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166392	exon2	c.219_220del	p.73_74del	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88026203	88026203	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015021	exon8	c.6137delA	p.E2046fs	.	.	.
SSPO	23145	broad.mit.edu	36	7	149105015	149105016	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198455	exon3	c.292_293insG	p.W98fs	.	.	.
CUX1	1523	broad.mit.edu	36	7	101664117	101664117	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181552	exon22	c.C3499T	p.R1167C	.	.	.
FLNC	2318	broad.mit.edu	36	7	128281045	128281046	+	Missense_Mutation	DNP	GA	TG	TG	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001458	exon39	c.6402_6403TG	.	.	.	.
WDR91	29062	broad.mit.edu	36	7	134544922	134544922	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014149	exon2	c.A249G	p.T83T	.	.	.
NUP205	23165	broad.mit.edu	36	7	134954895	134954895	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015135	exon29	c.A4148G	p.N1383S	.	.	.
PTN	5764	broad.mit.edu	36	7	136586530	136586530	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002825	exon4	c.G438T	p.K146N	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138229655	138229655	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164665	exon10	c.T4005C	p.T1335T	.	.	.
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	 BRAF,pituitary,NS,Substitution - Missense,0 	.	.
MGAM	8972	broad.mit.edu	36	7	141365484	141365484	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004668	exon4	c.G344A	p.R115H	.	.	.
MGAM	8972	broad.mit.edu	36	7	141449702	141449702	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004668	exon47	c.G5490A	p.T1830T	.	.	.
TRPV5	56302	broad.mit.edu	36	7	142336662	142336662	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019841	exon4	c.G470A	p.R157H	.	.	.
KEL	3792	broad.mit.edu	36	7	142369035	142369035	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000420	exon2	c.C50T	p.A17V	.	.	.
PIP	5304	broad.mit.edu	36	7	142546752	142546752	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002652	exon4	c.C336T	p.A112A	.	.	.
ZNF777	27153	broad.mit.edu	36	7	148760746	148760746	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015694	exon6	c.C1550G	p.A517G	.	.	.
TMEM176B	28959	broad.mit.edu	36	7	150124544	150124544	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001101312	exon2	c.G47A	p.R16K	.	.	.
GALNT11	63917	broad.mit.edu	36	7	151431240	151431240	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022087	exon4	c.G530A	p.R177H	.	.	.
GALNT11	63917	broad.mit.edu	36	7	151436198	151436198	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022087	exon6	c.C855T	p.S285S	.	.	.
RBM33	155435	broad.mit.edu	36	7	155227349	155227349	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_053043	exon13	c.C2125T	p.R709C	.	.	.
MACC1	346389	broad.mit.edu	36	7	20164866	20164866	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182762	exon5	c.T1643C	p.L548S	.	.	.
NPY	4852	broad.mit.edu	36	7	24291501	24291501	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000905	exon2	c.C117T	p.D39D	.	.	.
GNA12	2768	broad.mit.edu	36	7	2737671	2737671	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007353	exon4	c.G816A	p.E272E	.	.	.
CREB5	9586	broad.mit.edu	36	7	28576546	28576546	+	Silent	SNP	G	A	A	rs34895305	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004904	exon5	c.G309A	p.T103T	.	.	.
ELMO1	9844	broad.mit.edu	36	7	36901025	36901025	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039459	exon2	c.C120T	p.S40S	.	.	.
TXNDC3	51314	broad.mit.edu	36	7	37894421	37894421	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016616	exon15	c.C1265T	p.A422V	.	.	.
SFRP4	6424	broad.mit.edu	36	7	37922354	37922354	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003014	exon1	c.C311T	p.A104V	.	.	.
GLI3	2737	broad.mit.edu	36	7	41970804	41970804	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000168	exon15	c.C4392T	p.D1464D	.	.	.
AEBP1	165	broad.mit.edu	36	7	44119813	44119813	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001129	exon21	c.G2905A	p.V969I	.	.	.
OGDH	4967	broad.mit.edu	36	7	44651468	44651468	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001003941	exon3	c.T240C	p.F80F	.	.	.
ZMIZ2	83637	broad.mit.edu	36	7	44766626	44766626	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_174929	exon7	c.C1071T	p.S357S	.	.	.
ZMIZ2	83637	broad.mit.edu	36	7	44770582	44770582	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_174929	exon12	c.C1822T	p.R608W	.	.	.
ZPBP	11055	broad.mit.edu	36	7	50092035	50092035	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001159878	exon3	c.C215T	p.A72V	.	.	.
IKZF1	10320	broad.mit.edu	36	7	50435273	50435273	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006060	exon8	c.C1014T	p.S338S	.	.	.
POM121L12	285877	broad.mit.edu	36	7	53071275	53071275	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182595	exon1	c.C417T	p.I139I	.	.	.
SUN1	23353	broad.mit.edu	36	7	859757	859757	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130965	exon10	c.C1239T	p.D413D	.	.	.
ABCB1	5243	broad.mit.edu	36	7	87016717	87016717	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000927	exon15	c.G1608A	p.K536K	.	.	.
FZD1	8321	broad.mit.edu	36	7	90733070	90733070	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003505	exon1	c.C939T	p.P313P	.	.	.
ASB4	51666	broad.mit.edu	36	7	94995104	94995104	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016116	exon3	c.G531A	p.T177T	.	.	.
GIGYF1	64599	broad.mit.edu	36	7	100123106	100123106	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022574	exon4	c.331delC	p.L111fs	.	.	.
INTS1	26173	broad.mit.edu	36	7	1486494	1486495	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080453	exon30	c.4058_4059del	p.1353_1353del	.	.	.
INTS1	26173	broad.mit.edu	36	7	1486502	1486502	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080453	exon30	c.4051delG	p.D1351fs	.	.	.
KHDRBS3	10656	broad.mit.edu	36	8	136624097	136624098	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006558	exon3	c.226_227insT	p.L76fs	.	.	.
STAU2	27067	broad.mit.edu	36	8	74626861	74626862	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164383	exon8	c.954_955insC	p.P318fs	.	.	.
CNBD1	168975	broad.mit.edu	36	8	88367993	88367994	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173538	exon8	c.1020_1021insA	p.W340fs	.	.	.
RIMS2	9699	broad.mit.edu	36	8	104993524	104993524	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100117	exon6	c.G1760A	p.R587H	.	.	.
DPYS	1807	broad.mit.edu	36	8	105511024	105511024	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001385	exon5	c.C875T	p.A292V	.	.	.
CSMD3	114788	broad.mit.edu	36	8	114003083	114003083	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198123	exon10	c.C1582T	p.R528W	.	.	.
TAF2	6873	broad.mit.edu	36	8	120824003	120824003	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003184	exon25	c.C3289T	p.P1097S	.	.	.
KLHL38	340359	broad.mit.edu	36	8	124733386	124733386	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001081675	exon1	c.G962A	p.R321Q	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133561605	133561605	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004519	exon1	c.G357T	p.R119R	.	.	.
ZFAT	57623	broad.mit.edu	36	8	135683723	135683723	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001174157	exon5	c.G1235A	p.R412H	.	.	.
KHDRBS3	10656	broad.mit.edu	36	8	136728469	136728469	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006558	exon9	c.C1001A	p.A334E	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139214134	139214134	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015912	exon20	c.G4105A	p.A1369T	.	.	.
PTK2	5747	broad.mit.edu	36	8	141958804	141958804	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199649	exon4	c.G310A	p.V104I	.	.	.
SLC7A2	6542	broad.mit.edu	36	8	17462295	17462295	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008539	exon9	c.C1465T	p.Q489X	.	.	.
PIWIL2	55124	broad.mit.edu	36	8	22229780	22229780	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018068	exon19	c.A2286G	p.A762A	.	.	.
CHRNA2	1135	broad.mit.edu	36	8	27376880	27376880	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000742	exon6	c.C997T	p.L333L	.	.	.
C8orf80	389643	broad.mit.edu	36	8	27959050	27959050	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010906	exon12	c.G1359C	p.K453N	.	.	.
KIF13B	23303	broad.mit.edu	36	8	29062052	29062052	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015254	exon16	c.G1774T	p.A592S	.	.	.
ANK1	286	broad.mit.edu	36	8	41700284	41700284	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020475	exon8	c.G736A	p.A246T	.	.	.
C8orf42	157695	broad.mit.edu	36	8	432415	432415	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175075	exon3	c.C542T	p.P181L	.	.	.
MCM4	4173	broad.mit.edu	36	8	49051881	49051881	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182746	exon17	c.G2582A	p.R861H	.	.	.
RGS20	8601	broad.mit.edu	36	8	55014705	55014705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_170587	exon3	c.G527A	p.R176Q	.	.	.
PDE7A	5150	broad.mit.edu	36	8	66854584	66854584	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002603	exon3	c.C130T	p.R44C	.	.	.
DNAJC5B	85479	broad.mit.edu	36	8	67151533	67151533	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033105	exon4	c.C204T	p.H68H	.	.	.
WWP1	11059	broad.mit.edu	36	8	87542572	87542572	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007013	exon23	c.G2503A	p.V835M	.	.	.
CNBD1	168975	broad.mit.edu	36	8	88367898	88367898	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173538	exon8	c.G925C	p.E309Q	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88954802	88954802	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152418	exon1	c.C514T	p.R172C	.	.	.
RUNX1T1	862	broad.mit.edu	36	8	93096080	93096080	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198626	exon5	c.G371A	p.S124N	.	.	.
RIMS2	9699	broad.mit.edu	36	8	104996955	104996955	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100117	exon7	c.1869delA	p.V623fs	.	.	.
COLEC10	10584	broad.mit.edu	36	8	120183780	120183780	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006438	exon4	c.305delA	p.E102fs	.	.	.
HAS2	3037	broad.mit.edu	36	8	122698536	122698536	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005328	exon3	c.719delG	p.G240fs	.	.	.
TSPYL5	85453	broad.mit.edu	36	8	98358848	98358848	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033512	exon1	c.401delA	p.N134fs	.	.	.
TEX10	54881	broad.mit.edu	36	9	102149268	102149268	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017746	exon3	c.T422C	p.V141A	.	.	.
ALDOB	229	broad.mit.edu	36	9	103227001	103227001	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000035	exon8	c.G944C	p.G315A	.	.	.
SLC44A1	23446	broad.mit.edu	36	9	107167641	107167641	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080546	exon11	c.G1310A	p.R437H	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108774171	108774171	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021224	exon8	c.G6492A	p.L2164L	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112298916	112298916	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153366	exon8	c.G1800T	p.K600N	.	.	.
RGS3	5998	broad.mit.edu	36	9	115386256	115386256	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144488	exon21	c.C2743T	p.R915C	.	.	.
COL27A1	85301	broad.mit.edu	36	9	115996546	115996546	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032888	exon6	c.C2058T	p.H686H	.	.	.
PAPPA	5069	broad.mit.edu	36	9	118134485	118134485	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002581	exon12	c.C3314T	p.T1105M	.	.	.
LHX6	26468	broad.mit.edu	36	9	124029106	124029106	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199160	exon3	c.G181A	p.A61T	.	.	.
GAPVD1	26130	broad.mit.edu	36	9	127139367	127139367	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015635	exon16	c.G2634A	p.S878S	.	.	.
GLE1	2733	broad.mit.edu	36	9	130341764	130341764	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001003722	exon14	c.A1930C	p.M644L	.	.	.
SOHLH1	402381	broad.mit.edu	36	9	137728385	137728385	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012415	exon5	c.G555A	p.A185A	.	.	.
CACNA1B	774	broad.mit.edu	36	9	139927505	139927505	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000718	exon4	c.C583T	p.R195C	.	.	.
RFX3	5991	broad.mit.edu	36	9	3261070	3261070	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_134428	exon11	c.T1135A	p.L379M	.	.	.
B4GALT1	2683	broad.mit.edu	36	9	33110442	33110442	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001497	exon3	c.G811A	p.V271I	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37734869	37734869	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014907	exon16	c.G2840A	p.R947Q	.	.	.
ALDH1B1	219	broad.mit.edu	36	9	38387082	38387082	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000692	exon2	c.C1337T	p.A446V	.	.	.
KIAA1432	57589	broad.mit.edu	36	9	5722429	5722429	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020829	exon6	c.G525A	p.T175T	.	.	.
UHRF2	115426	broad.mit.edu	36	9	6467754	6467754	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152896	exon6	c.A1106T	p.Y369F	.	.	.
APBA1	320	broad.mit.edu	36	9	71254511	71254511	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001163	exon10	c.G1990T	p.G664X	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76590727	76590727	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001177310	exon21	c.T2787A	p.F929L	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76626526	76626526	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001177310	exon8	c.C874T	p.P292S	.	.	.
GNA14	9630	broad.mit.edu	36	9	79239227	79239227	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004297	exon3	c.T341C	p.V114A	.	.	.
ZCCHC6	79670	broad.mit.edu	36	9	88106029	88106029	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024617	exon26	c.C4402T	p.Q1468X	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89510899	89510899	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004938	exon26	c.C3093T	p.D1031D	.	.	.
ECM2	1842	broad.mit.edu	36	9	94317077	94317077	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001393	exon4	c.G711A	p.G237G	.	.	.
C9orf30	91283	broad.mit.edu	36	9	102252820	102252820	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080655	exon3	c.579delA	p.L193fs	.	.	.
RGS3	5998	broad.mit.edu	36	9	115338940	115338942	+	In_Frame_Del	DEL	AGA	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	AGA	AGA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144488	exon20	c.1958_1960del	p.653_654del	.	.	.
SLC25A25	114789	broad.mit.edu	36	9	129894137	129894137	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001006642	exon1	c.167delA	p.E56fs	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89511622	89511622	+	Frame_Shift_Del	DEL	G	-	-	rs56169226	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004938	exon26	c.3816delG	p.M1272fs	.	.	.
USP11	8237	broad.mit.edu	36	X	46988880	46988881	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004651	exon14	c.1959_1960insG	p.D653fs	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63327639	63327640	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152424	exon2	c.2253_2254insC	p.P751fs	.	.	.
STARD8	9754	broad.mit.edu	36	X	67860244	67860245	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142503	exon13	c.2851_2852insC	p.A951fs	.	.	.
NXF3	56000	broad.mit.edu	36	X	102221001	102221001	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022052	exon15	c.C1277T	p.A426V	.	.	.
AGTR2	186	broad.mit.edu	36	X	115218004	115218004	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000686	exon3	c.A443G	p.Y148C	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123342659	123342659	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014253	exon31	c.C7586T	p.A2529V	.	.	.
DCAF12L2	340578	broad.mit.edu	36	X	125127285	125127285	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013628	exon1	c.G304A	p.A102T	.	.	.
EGFL6	25975	broad.mit.edu	36	X	13536456	13536456	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001167890	exon7	c.G748T	p.G250X	.	.	.
F9	2158	broad.mit.edu	36	X	138440635	138440635	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000133	exon1	c.A46G	p.T16A	.	.	.
SLITRK4	139065	broad.mit.edu	36	X	142544745	142544745	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173078	exon2	c.C1846T	p.P616S	.	.	.
UBE2NL	389898	broad.mit.edu	36	X	142795117	142795117	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012989	exon1	c.G249A	p.K83K	.	.	.
GLRA2	2742	broad.mit.edu	36	X	14458134	14458134	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001118885	exon2	c.T34A	p.L12M	.	.	.
FMR1NB	158521	broad.mit.edu	36	X	146892470	146892470	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152578	exon2	c.A335G	p.H112R	.	.	.
GABRE	2564	broad.mit.edu	36	X	150873936	150873936	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004961	exon9	c.C1414T	p.R472C	.	.	.
ATP2B3	492	broad.mit.edu	36	X	152478503	152478503	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021949	exon16	c.C2748T	p.R916R	.	.	.
DUSP9	1852	broad.mit.edu	36	X	152568048	152568048	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001395	exon3	c.G541A	p.D181N	.	.	.
HCFC1	3054	broad.mit.edu	36	X	152873810	152873810	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005334	exon17	c.G3234A	p.P1078P	.	.	.
NHS	4810	broad.mit.edu	36	X	17620449	17620449	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136024	exon3	c.A261G	p.P87P	.	.	.
ACOT9	23597	broad.mit.edu	36	X	23634743	23634743	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001037171	exon11	c.G765A	p.T255T	.	.	.
PHF16	9767	broad.mit.edu	36	X	46803057	46803057	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014735	exon11	c.C2106A	p.G702G	.	.	.
UBA1	7317	broad.mit.edu	36	X	46950646	46950646	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153280	exon16	c.C1797T	p.G599G	.	.	.
USP11	8237	broad.mit.edu	36	X	46984975	46984975	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004651	exon6	c.G856A	p.A286T	.	.	.
TBC1D25	4943	broad.mit.edu	36	X	48304224	48304224	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002536	exon6	c.C1984T	p.R662W	.	.	.
PRAF2	11230	broad.mit.edu	36	X	48816601	48816601	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007213	exon3	c.G408A	p.V136V	.	.	.
PHF8	23133	broad.mit.edu	36	X	54045328	54045328	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001184898	exon10	c.C1126A	p.L376M	.	.	.
PHF8	23133	broad.mit.edu	36	X	54057698	54057698	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001184898	exon7	c.C620T	p.P207L	.	.	.
AR	367	broad.mit.edu	36	X	66848001	66848001	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001011645	exon4	c.C322T	p.L108L	.	.	.
AR	367	broad.mit.edu	36	X	66859512	66859512	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001011645	exon7	c.C972A	p.R324R	.	.	.
KIF4A	24137	broad.mit.edu	36	X	69510764	69510764	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012310	exon16	c.G1713A	p.L571L	.	.	.
ZMYM3	9203	broad.mit.edu	36	X	70381408	70381408	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001171162	exon19	c.A3032G	p.E1011G	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73880856	73880856	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008537	exon3	c.C261T	p.P87P	.	.	.
MAGEE1	57692	broad.mit.edu	36	X	75566248	75566248	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020932	exon1	c.G1521T	p.Q507H	.	.	.
POF1B	79983	broad.mit.edu	36	X	84447966	84447966	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024921	exon12	c.C1194T	p.C398C	.	.	.
KAL1	3730	broad.mit.edu	36	X	8515880	8515880	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000216	exon5	c.C681A	p.I227I	.	.	.
STAG2	10735	broad.mit.edu	36	X	122999127	122999127	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042750	exon6	c.358delT	p.F120fs	.	.	.
SLC25A14	9016	broad.mit.edu	36	X	129334564	129334564	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003951	exon10	c.937delT	p.F313fs	.	.	.
IQSEC2	23096	broad.mit.edu	36	X	53280554	53280554	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001111125	exon15	c.4039delG	p.A1347fs	.	.	.
MAGEE2	139599	broad.mit.edu	36	X	74921479	74921479	+	Frame_Shift_Del	DEL	G	-	-	rs61732441	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138703	exon1	c.133delC	p.Q45fs	.	.	.
