Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	validation_method	t_ref_count	validation_status	validation_tumor_sample	t_alt_count	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PLD4	122618	broad.mit.edu	37	14	105393529	105393529	+	Missense_Mutation	SNP	A	G	G			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr14:105393529A>G	uc010tyl.1	+	1	231	c.73A>G	c.(73-75)Atg>Gtg	p.M25V	PLD4_uc001ypu.1_Missense_Mutation_p.M18V	NM_138790	NP_620145	Q96BZ4	PLD4_HUMAN	Homo sapiens phospholipase D family, member 4 (PLD4), mRNA.	18					lipid catabolic process	integral to membrane	NAPE-specific phospholipase D activity|phospholipase D activity			central_nervous_system(1)|kidney(1)|large_intestine(1)|lung(7)|ovary(1)|skin(1)|urinary_tract(1)	13		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.00067)|OV - Ovarian serous cystadenocarcinoma(23;0.00976)|Epithelial(46;0.0201)|GBM - Glioblastoma multiforme(11;0.116)		Choline(DB00122)	GCCATGCTCCATGCCGCCCCG	0.662000														68			4		0	0	1	0	0
STIL	6491	broad.mit.edu	37	1	47717422	47717422	+	Nonsense_Mutation	SNP	G	A	A			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr1:47717422G>A	uc001crd.1	-	16	3408	c.3253C>T	c.(3253-3255)Cga>Tga	p.R1085*	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Nonsense_Mutation_p.R1038*|STIL_uc010omo.1_Nonsense_Mutation_p.R1067*|STIL_uc001crc.1_Nonsense_Mutation_p.R1084*|STIL_uc001cre.1_Nonsense_Mutation_p.R1084*	NM_001048166	NP_001041631	Q15468	STIL_HUMAN	Homo sapiens SCL/TAL1 interrupting locus (STIL), transcript variant 1, mRNA.	1084					cell proliferation|multicellular organismal development	centrosome|cytosol				central_nervous_system(1)|endometrium(4)|kidney(3)|large_intestine(9)|lung(14)|pancreas(1)|skin(1)|upper_aerodigestive_tract(3)	36		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				TGGTTCGATCGAGTGACAGAC	0.408000														108			40		0	0	1	0	0
SETD6	79918	broad.mit.edu	37	16	58550764	58550764	+	Missense_Mutation	SNP	G	A	A			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr16:58550764G>A	uc002ens.3	+	4	783	c.724G>A	c.(724-726)Gtg>Atg	p.V242M	SETD6_uc010cdl.2_Missense_Mutation_p.V242M|SETD6_uc021tjh.1_3'UTR|SETD6_uc002enr.3_Missense_Mutation_p.V218M|SETD6_uc010cdm.3_Non-coding_Transcript|SETD6_uc010vij.1_Missense_Mutation_p.V166M	NM_001160305	NP_001153777	Q8TBK2	SETD6_HUMAN	Homo sapiens SET domain containing 6 (SETD6), transcript variant 1, mRNA.	242	SET.				negative regulation of NF-kappaB transcription factor activity|peptidyl-lysine monomethylation|regulation of inflammatory response	nucleus	NF-kappaB binding|protein-lysine N-methyltransferase activity			endometrium(1)|kidney(1)|large_intestine(1)|lung(2)|ovary(1)|skin(1)	7						CAACTCCCCCGTGATGGTGCC	0.517000														73			7		0	0	1	0	0
PAMR1	25891	broad.mit.edu	37	11	35492290	35492290	+	Missense_Mutation	SNP	C	T	T			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr11:35492290C>T	uc001mwf.3	-	4	614	c.571G>A	c.(571-573)Gat>Aat	p.D191N	PAMR1_uc001mwg.3_Missense_Mutation_p.D191N|PAMR1_uc010rew.2_Intron|PAMR1_uc010rex.2_Missense_Mutation_p.D151N	NM_015430	NP_056245	Q6UXH9	PAMR1_HUMAN	Homo sapiens peptidase domain containing associated with muscle regeneration 1 (PAMR1), transcript variant 1, mRNA.	191	CUB.				proteolysis	extracellular region	serine-type endopeptidase activity	p.R190S(1)		breast(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(6)|lung(8)|ovary(3)|upper_aerodigestive_tract(1)	26						ATCTGGCCATCGCGGTTGTCT	0.542000														53			11		0	0	1	0	0
ITGAX	3687	broad.mit.edu	37	16	31393193	31393193	+	Missense_Mutation	SNP	G	A	A			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr16:31393193G>A	uc002ebt.3	+	29	3524	c.3457G>A	c.(3457-3459)Ggg>Agg	p.G1153R	ITGAX_uc002ebu.1_Missense_Mutation_p.G1153R	NM_000887	NP_000878	P20702	ITAX_HUMAN	Homo sapiens integrin, alpha X (complement component 3 receptor 4 subunit) (ITGAX), mRNA.	1153					blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(8)|lung(42)|ovary(2)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)	77						CCCAGAAAACGGGACACAGAC	0.537000														33			14		0	0	1	0	0
LOC440131	440131	broad.mit.edu	37	13	30524521	30524521	+	RNA	SNP	G	T	T			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr13:30524521G>T	uc010aav.3	+	4		c.592G>T								Homo sapiens uncharacterized LOC440131 (LOC440131), non-coding RNA.																		AAAACCCAGAGGAAAGCTGTT	0.368000														30			12		5.16669e-11	5.56412e-11	1	1	0
OR4K5	79317	broad.mit.edu	37	14	20389392	20389392	+	Silent	SNP	C	T	T			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr14:20389392C>T	uc010tkw.2	+	0	627	c.627C>T	c.(625-627)agC>agT	p.S209S		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	Homo sapiens olfactory receptor, family 4, subfamily K, member 5 (OR4K5), mRNA.	209					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|endometrium(4)|kidney(2)|large_intestine(6)|liver(1)|lung(27)|ovary(1)|skin(3)|stomach(1)|urinary_tract(1)	47	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTTCCCTAAGCACTTTCTCTC	0.428000														237			6		0	0	1	0	0
PLK4	10733	broad.mit.edu	37	4	128814529	128814529	+	Missense_Mutation	SNP	A	C	C			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr4:128814529A>C	uc003ifo.3	+	10	2552	c.2278A>C	c.(2278-2280)Agc>Cgc	p.S760R	PLK4_uc011cgs.2_Missense_Mutation_p.S728R|PLK4_uc011cgt.2_Missense_Mutation_p.S719R	NM_014264	NP_001177730	O00444	PLK4_HUMAN	Homo sapiens polo-like kinase 4 (PLK4), transcript variant 1, mRNA.	760					G2/M transition of mitotic cell cycle|positive regulation of centriole replication|trophoblast giant cell differentiation	centriole|cleavage furrow|cytosol|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(1)|large_intestine(10)|lung(12)|prostate(1)|upper_aerodigestive_tract(1)	31						TGAAGTTAATAGCTTGAAAGA	0.299000														182			6		0	0	1	0	0
BAG3	9531	broad.mit.edu	37	10	121431909	121431909	+	Missense_Mutation	SNP	C	T	T			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr10:121431909C>T	uc001lem.3	+	2	956	c.650C>T	c.(649-651)aCc>aTc	p.T217I	BAG3_uc001lel.3_Missense_Mutation_p.T217I	NM_004281	NP_004272	O95817	BAG3_HUMAN	Homo sapiens BCL2-associated athanogene 3 (BAG3), mRNA.	217					anti-apoptosis|apoptosis|protein folding	cytosol				endometrium(3)|kidney(1)|large_intestine(3)|liver(2)|lung(5)|ovary(2)|prostate(1)|skin(2)|urinary_tract(1)	20		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00187)|BRCA - Breast invasive adenocarcinoma(275;0.148)		CAGAACGTTACCCGGCCAGCA	0.647000														77			6		0	0	1	0	0
MEST	4232	broad.mit.edu	37	7	130140638	130140638	+	Missense_Mutation	SNP	C	T	T			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr7:130140638C>T	uc003vqg.3	+	8	912	c.656C>T	c.(655-657)cCa>cTa	p.P219L	MEST_uc003vqc.3_Missense_Mutation_p.P210L|MEST_uc003vqd.3_Intron|MEST_uc022alp.1_Intron|MEST_uc003vqf.3_Missense_Mutation_p.P210L|MEST_uc011kph.2_Missense_Mutation_p.P205L	NM_002402	NP_002393	Q5EB52	MEST_HUMAN	Homo sapiens mesoderm specific transcript homolog (mouse) (MEST), transcript variant 1, mRNA.	219					mesoderm development	endoplasmic reticulum membrane|integral to membrane	hydrolase activity|protein binding			breast(1)|endometrium(2)|large_intestine(3)|lung(4)|ovary(2)	12	Melanoma(18;0.0435)					AGTCTCACCCCAGTCTTTGGG	0.517000														48			10		0	0	1	0	0
TKTL1	8277	broad.mit.edu	37	X	153556232	153556232	+	Missense_Mutation	SNP	G	A	A			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chrX:153556232G>A	uc004fkg.3	+	11	1732	c.1546G>A	c.(1546-1548)Gtc>Atc	p.V516I	TKTL1_uc011mzl.2_Missense_Mutation_p.V510I|TKTL1_uc011mzm.2_Missense_Mutation_p.V312I|TKTL1_uc004fkh.3_Missense_Mutation_p.V460I	NM_012253	NP_001139406	P51854	TKTL1_HUMAN	Homo sapiens transketolase-like 1 (TKTL1), transcript variant 1, mRNA.	516					glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			NS(2)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(8)|ovary(5)|prostate(1)|skin(1)|urinary_tract(2)	34	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					ACCTCTGGATGTCGCCACCAT	0.473000														86			37		0	0	1	0	0
MCM4	4173	broad.mit.edu	37	8	48882495	48882495	+	Nonsense_Mutation	SNP	C	T	T			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr8:48882495C>T	uc003xqk.2	+	10	2138	c.1312C>T	c.(1312-1314)Cag>Tag	p.Q438*	MCM4_uc003xql.2_Nonsense_Mutation_p.Q438*|MCM4_uc011ldi.2_Nonsense_Mutation_p.Q425*	NM_182746	NP_877423	P33991	MCM4_HUMAN	Homo sapiens minichromosome maintenance complex component 4 (MCM4), transcript variant 2, mRNA.	438					DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|cell cycle checkpoint	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			biliary_tract(1)|breast(1)|endometrium(7)|kidney(4)|large_intestine(5)|lung(16)|ovary(2)|prostate(3)|skin(3)|urinary_tract(2)	44		all_cancers(86;0.026)|all_epithelial(80;0.000748)|Lung NSC(129;0.00327)|all_lung(136;0.00354)				AGAAGCAGAACAGAAACTTTT	0.413000														91			4		0	0	1	0	0
HRG	3273	broad.mit.edu	37	3	186395001	186395001	+	Nonsense_Mutation	SNP	G	T	T			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr3:186395001G>T	uc003fqq.3	+	6	930	c.907G>T	c.(907-909)Gaa>Taa	p.E303*		NM_000412	NP_000403	P04196	HRG_HUMAN	Homo sapiens histidine-rich glycoprotein (HRG), mRNA.	303	Pro-rich.				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			breast(1)|central_nervous_system(1)|endometrium(4)|large_intestine(12)|lung(13)|ovary(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	37	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		TCCTCCAGATGAAAGAGATCA	0.527000														95			28		4.74835e-14	5.31816e-14	1	1	0
MTOR	2475	broad.mit.edu	37	1	11187847	11187847	+	Missense_Mutation	SNP	A	G	G			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr1:11187847A>G	uc001asd.3	-	43	6171	c.6050T>C	c.(6049-6051)aTc>aCc	p.I2017T	MTOR_uc001asc.3_Missense_Mutation_p.I222T	NM_004958	NP_004949	P42345	MTOR_HUMAN	Homo sapiens mechanistic target of rapamycin (serine/threonine kinase) (MTOR), mRNA.	2017					T cell costimulation|TOR signaling cascade|cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient	Golgi membrane|PML body|TORC1 complex|TORC2 complex|endoplasmic reticulum membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			breast(5)|central_nervous_system(7)|endometrium(20)|kidney(34)|large_intestine(21)|lung(43)|ovary(9)|prostate(3)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	149						GGCCACTCGGATCAGCTCCTC	0.498000														31			15		0	0	1	0	0
MRPS10	55173	broad.mit.edu	37	6	42179589	42179589	+	Missense_Mutation	SNP	T	C	C			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr6:42179589T>C	uc003osa.4	-	3	299	c.253A>G	c.(253-255)Aag>Gag	p.K85E	MRPS10_uc011dup.2_Missense_Mutation_p.K44E	NM_018141	NP_060611	P82664	RT10_HUMAN	Homo sapiens mitochondrial ribosomal protein S10 (MRPS10), nuclear gene encoding mitochondrial protein, mRNA.	85					translation	actin cytoskeleton|mitochondrion|ribosome	structural constituent of ribosome			endometrium(1)|lung(1)	2	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|Epithelial(12;0.00528)			AATACAGCCTTATCGTGACCT	0.388000														102			3		0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50734080	50734080	+	Missense_Mutation	SNP	T	C	C			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr18:50734080T>C	uc002lfe.2	+	10	2370	c.1754T>C	c.(1753-1755)cTg>cCg	p.L585P	DCC_uc010xdr.1_Missense_Mutation_p.L433P|DCC_uc010dpf.2_Missense_Mutation_p.L240P	NM_005215	NP_005206	P43146	DCC_HUMAN	Homo sapiens deleted in colorectal carcinoma (DCC), mRNA.	585	Fibronectin type-III 2.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				NS(3)|breast(2)|central_nervous_system(1)|cervix(2)|endometrium(13)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(23)|liver(1)|lung(56)|ovary(7)|pancreas(3)|prostate(2)|skin(16)|stomach(2)|upper_aerodigestive_tract(4)|urinary_tract(6)	148		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TCTTATAAACTGGAAGGCCTG	0.378000														77			5		0	0	1	0	0
UGT2B7	7364	broad.mit.edu	37	4	69962648	69962648	+	Missense_Mutation	SNP	T	C	C			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr4:69962648T>C	uc003heg.4	+	0	456	c.410T>C	c.(409-411)aTg>aCg	p.M137T	UGT2B7_uc010ihq.3_Missense_Mutation_p.M137T	NM_001074	NP_001065	P16662	UD2B7_HUMAN	Homo sapiens UDP glucuronosyltransferase 2 family, polypeptide B7 (UGT2B7), mRNA.	137					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			autonomic_ganglia(1)|endometrium(3)|kidney(4)|large_intestine(6)|lung(16)|ovary(1)|prostate(1)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	38						AAGAAATTTATGAAAAAAGTA	0.323000														258			8		0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9002616	9002616	+	Missense_Mutation	SNP	G	T	T			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr19:9002616G>T	uc002mkp.3	-	50	40404	c.40200C>A	c.(40198-40200)gaC>gaA	p.D13400E	MUC16_uc010dwi.3_Non-coding_Transcript|MUC16_uc010dwj.3_Missense_Mutation_p.D217E|MUC16_uc021uog.1_Non-coding_Transcript	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	Homo sapiens mucin 16, cell surface associated (MUC16), mRNA.	13402	SEA 9.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			NS(9)|autonomic_ganglia(1)|breast(26)|central_nervous_system(11)|cervix(1)|endometrium(46)|haematopoietic_and_lymphoid_tissue(5)|kidney(35)|large_intestine(91)|liver(1)|lung(278)|ovary(17)|pancreas(2)|prostate(17)|skin(18)|soft_tissue(1)|stomach(8)|upper_aerodigestive_tract(16)|urinary_tract(7)	590						GGCTTTTGGGGTCAGGACGAT	0.572000														55			25		2.61193e-14	3.04725e-14	1	1	0
DNAH1	25981	broad.mit.edu	37	3	52416340	52416340	+	Missense_Mutation	SNP	G	A	A			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr3:52416340G>A	uc011bef.2	+	49	8071	c.7810G>A	c.(7810-7812)Gag>Aag	p.E2604K	DNAH1_uc003ddv.3_5'Flank	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	Homo sapiens dynein, axonemal, heavy chain 1 (DNAH1), mRNA.	2604	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			cervix(2)|endometrium(18)|kidney(6)|large_intestine(3)|lung(31)|prostate(1)|urinary_tract(1)	62				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CTCCAGGGCCGAGTACGAGTG	0.567000														32			3		0	0	1	0	0
ZNF668	79759	broad.mit.edu	37	16	31072731	31072731	+	Silent	SNP	A	C	C			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr16:31072731A>C	uc021tgt.1	-	3	1943	c.1587T>G	c.(1585-1587)ggT>ggG	p.G529G	ZNF668_uc010cag.2_Silent_p.G506G|ZNF668_uc010caf.3_Silent_p.G506G|ZNF668_uc002eao.3_Silent_p.G506G	NM_001172669	NP_078982	Q96K58	ZN668_HUMAN	Homo sapiens zinc finger protein 668 (ZNF668), transcript variant 3, mRNA.	506					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(6)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(3)|lung(9)|ovary(1)|prostate(1)|urinary_tract(1)	27						CAGCCTCCTCACCCCCCGCCT	0.652000														38			6		0	0	1	0	0
FAM69A	388650	broad.mit.edu	37	1	93341936	93341936	+	Missense_Mutation	SNP	C	A	A			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr1:93341936C>A	uc001dpg.3	-	1	199	c.106G>T	c.(106-108)Gtt>Ttt	p.V36F	FAM69A_uc001dpc.3_Missense_Mutation_p.V36F|FAM69A_uc010otg.2_Missense_Mutation_p.V29F|FAM69A_uc021opu.1_Missense_Mutation_p.V11F|FAM69A_uc021opv.1_Intron|FAM69A_uc021opw.1_Missense_Mutation_p.V36F	NM_001006605	NP_001006606	Q5T7M9	FA69A_HUMAN	Homo sapiens family with sequence similarity 69, member A (FAM69A), transcript variant 1, mRNA.	36						endoplasmic reticulum membrane|integral to membrane				endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(1)	4		all_lung(203;0.00265)|Lung NSC(277;0.00562)|all_neural(321;0.185)|Melanoma(281;0.192)|Glioma(108;0.203)		GBM - Glioblastoma multiforme(16;0.000563)|all cancers(265;0.000751)|Epithelial(280;0.127)		CCAACAAAAACCACTAACCAG	0.338000														133			5		0.000602214	0.000602214	1	1	0
FASTKD1	79675	broad.mit.edu	37	2	170428445	170428445	+	Missense_Mutation	SNP	C	T	T			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr2:170428445C>T	uc002uev.4	-	1	483	c.95G>A	c.(94-96)cGa>cAa	p.R32Q	FASTKD1_uc002uew.4_Non-coding_Transcript|FASTKD1_uc002uex.4_Missense_Mutation_p.R18Q|FASTKD1_uc002uey.2_Missense_Mutation_p.R18Q	NM_024622	NP_078898	Q53R41	FAKD1_HUMAN	Homo sapiens FAST kinase domains 1 (FASTKD1), mRNA.	32					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity	p.R32Q(2)		breast(1)|central_nervous_system(1)|cervix(2)|endometrium(2)|kidney(5)|large_intestine(10)|lung(9)|ovary(4)|prostate(3)	37						ACTGATGGGTCGAAATTGAAA	0.343000														106			6		0	0	1	0	0
MGC39584	441058	broad.mit.edu	37	GL000193.1	88307	88307	+	RNA	SNP	C	T	T			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chrGL000193.1:88307C>T	uc003izx.3	-	0		c.69G>A			MGC39584_uc003izy.3_5'Flank					Homo sapiens uncharacterized LOC441058 (MGC39584), non-coding RNA.																		ctgctgtcatcaggagaggtt	0.642000														12			4		0	0	1	0	0
SPATA20	64847	broad.mit.edu	37	17	48629513	48629513	+	Silent	SNP	G	T	T			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr17:48629513G>T	uc002ird.3	+	13	2070	c.1929G>T	c.(1927-1929)ggG>ggT	p.G643G	SPATA20_uc002irc.3_Silent_p.G294G|SPATA20_uc002ire.3_Silent_p.G583G|SPATA20_uc002irf.3_Silent_p.G627G|SPATA20_uc002irg.3_Non-coding_Transcript	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	Homo sapiens spermatogenesis associated 20 (SPATA20), mRNA.	627					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding			endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(5)|lung(9)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	24	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			CTGAGCTGGGGGCTGGCCTGC	0.652000														62			27		6.00712e-18	7.31302e-18	1	1	0
FLRT2	23768	broad.mit.edu	37	14	86088695	86088695	+	Silent	SNP	A	G	G			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr14:86088695A>G	uc021rxf.1	+	0	837	c.837A>G	c.(835-837)gaA>gaG	p.E279E	FLRT2_uc001xvr.3_Silent_p.E279E|FLRT2_uc010atd.3_Silent_p.E279E	NM_013231	NP_037363	O43155	FLRT2_HUMAN	Homo sapiens fibronectin leucine rich transmembrane protein 2 (FLRT2), mRNA.	279					cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			NS(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(3)|kidney(7)|large_intestine(21)|lung(27)|ovary(3)|skin(3)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	73				BRCA - Breast invasive adenocarcinoma(234;0.0319)		GTAAGCTGGAACGGCTGGATA	0.488000														83			4		0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	118950340	118950340	+	Silent	SNP	C	T	T			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr9:118950340C>T	uc004bjn.3	+	1	1704	c.1323C>T	c.(1321-1323)cgC>cgT	p.R441R	PAPPA_uc011lxp.1_Silent_p.R234R|PAPPA_uc011lxq.2_Silent_p.R234R	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	Homo sapiens pregnancy-associated plasma protein A, pappalysin 1 (PAPPA), mRNA.	441	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding	p.R441R(2)|p.R441H(1)		NS(1)|breast(4)|endometrium(9)|kidney(2)|large_intestine(23)|lung(33)|ovary(4)|pancreas(2)|prostate(5)|skin(7)|stomach(1)|upper_aerodigestive_tract(6)|urinary_tract(1)	98						GGGATTGCCGCCACCTGCGCC	0.587000														50			3		0	0	1	0	0
SCAPER	49855	broad.mit.edu	37	15	77046256	77046256	+	Missense_Mutation	SNP	G	T	T			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr15:77046256G>T	uc002bby.3	-	13	1818	c.1759C>A	c.(1759-1761)Cta>Ata	p.L587I	SCAPER_uc002bbx.3_Missense_Mutation_p.L341I|SCAPER_uc002bbz.1_Missense_Mutation_p.L458I|SCAPER_uc002bca.1_Missense_Mutation_p.L452I|SCAPER_uc002bcb.1_Missense_Mutation_p.L593I	NM_020843	NP_065894	Q9BY12	SCAPE_HUMAN	Homo sapiens S-phase cyclin A-associated protein in the ER (SCAPER), transcript variant 1, mRNA.	586	Glu-rich.					endoplasmic reticulum|nucleus	zinc ion binding			NS(1)|breast(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(8)|lung(16)|ovary(2)|prostate(2)|skin(1)|urinary_tract(2)	39						CGTTGATCTAGCAATTCTTCC	0.358000														120			6		2.0095e-06	2.08392e-06	1	1	0
ZNF440	126070	broad.mit.edu	37	19	11942848	11942848	+	Missense_Mutation	SNP	G	A	A			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr19:11942848G>A	uc002msp.1	+	3	1013	c.857G>A	c.(856-858)tGt>tAt	p.C286Y	ZNF440_uc021upk.1_5'Flank	NM_152357	NP_689570	Q8IYI8	ZN440_HUMAN	Homo sapiens zinc finger protein 440 (ZNF440), mRNA.	286					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|endometrium(4)|kidney(1)|large_intestine(7)|lung(9)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	27						GCTTATCAATGTAAGGAATGT	0.408000														81			5		0	0	1	0	0
FAM92A1P2	403315	broad.mit.edu	37	4	183959505	183959505	+	RNA	DEL	A	-	-			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr4:183959505delA	uc003ivi.4	+	0		c.688delA								Homo sapiens family with sequence similarity 92, member A3 (FAM92A3), non-coding RNA.																		gtgaaatcccatctctactaa	0.488													---	4	---	---	2	---					
GTF2IRD1	9569	broad.mit.edu	37	7	74016919	74016919	+	Splice_Site	DEL	A	-	-			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr7:74016919delA	uc003uaq.3	+	27	3433	c.3040_splice	c.e27+1		GTF2IRD1_uc010lbq.3_Splice_Site|GTF2IRD1_uc003uap.3_Splice_Site	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	Homo sapiens GTF2I repeat domain containing 1 (GTF2IRD1), transcript variant 1, mRNA.							nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			NS(1)|breast(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(9)|lung(19)|ovary(6)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	49						GTAAAAAAAGAAAAAAAAAAA	0.373													---	4	---	---	2	---					
FAM160B2	64760	broad.mit.edu	37	8	21956855	21956855	+	Frame_Shift_Del	DEL	C	-	-			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr8:21956855delC	uc011kyx.2	+	8	1186	c.1135delC	c.(1135-1137)cccfs	p.P379fs	FAM160B2_uc011kyy.2_Non-coding_Transcript	NM_022749	NP_073586	Q86V87	F16B2_HUMAN	Homo sapiens family with sequence similarity 160, member B2 (FAM160B2), mRNA.	379										endometrium(2)|kidney(1)|lung(2)|prostate(3)|urinary_tract(1)	9						GACCCTGCAGCCCCAGCTCCT	0.587													---	66	---	---	30	---					
GALNS	2588	broad.mit.edu	37	16	88908341	88908346	+	In_Frame_Del	DEL	TGCGGA	-	-	rs118204441		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr16:88908341_88908346delTGCGGA	uc010cid.3	-	3	537_542	c.296_301delTCCGCA	c.(295-303)atccgcaat>aat	p.IR99del	GALNS_uc002fly.4_In_Frame_Del_p.IR93del|GALNS_uc002flz.4_5'UTR			P34059	GALNS_HUMAN	Homo sapiens galactosamine (N-acetyl)-6-sulfate sulfatase (GALNS), mRNA.	93						lysosome	N-acetylgalactosamine-4-sulfatase activity|N-acetylgalactosamine-6-sulfatase activity|metal ion binding			breast(1)|endometrium(4)|kidney(2)|large_intestine(7)|lung(8)	22				BRCA - Breast invasive adenocarcinoma(80;0.0496)	Hyaluronidase(DB00070)	TAGAAGCCATTGCGGATGGGTAGCCG	0.617													---	69	---	---	17	---					
MUC16	94025	broad.mit.edu	37	19	9066166	9066167	+	Frame_Shift_Ins	INS	-	G	G			TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	g.chr19:9066166_9066167insG	uc002mkp.3	-	2	21483_21484	c.21279_21280insC	c.(21277-21282)cccagcfs	p.P7093fs		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	Homo sapiens mucin 16, cell surface associated (MUC16), mRNA.	7095	Ser-rich.|Thr-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			NS(9)|autonomic_ganglia(1)|breast(26)|central_nervous_system(11)|cervix(1)|endometrium(46)|haematopoietic_and_lymphoid_tissue(5)|kidney(35)|large_intestine(91)|liver(1)|lung(278)|ovary(17)|pancreas(2)|prostate(17)|skin(18)|soft_tissue(1)|stomach(8)|upper_aerodigestive_tract(16)|urinary_tract(7)	590						GGGAGAGAGCTGGGATTTTCCA	0.510													---	176	---	---	7	---					
