Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	validation_method	t_ref_count	validation_status	validation_tumor_sample	t_alt_count	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MBOAT2	129642	broad.mit.edu	37	2	9013240	9013240	+	Missense_Mutation	SNP	A	G	G			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr2:9013240A>G	uc002qzg.1	-	7	1014	c.881T>C	c.(880-882)cTa>cCa	p.L294P	MBOAT2_uc010yix.1_Missense_Mutation_p.L294P	NM_138799	NP_620154	Q6ZWT7	MBOA2_HUMAN	Homo sapiens membrane bound O-acyltransferase domain containing 2 (MBOAT2), mRNA.	294					phospholipid biosynthetic process	integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity		MBOAT2/PRKCE(2)	endometrium(2)|kidney(1)|large_intestine(9)|lung(2)|skin(1)	15	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TTACTTACCTAGCGTCCATGC	0.413000														49			3		0	0	1	0	0
ZFP106	64397	broad.mit.edu	37	15	42720229	42720229	+	Missense_Mutation	SNP	G	A	A			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr15:42720229G>A	uc001zpw.3	-	11	5243	c.4916C>T	c.(4915-4917)aCc>aTc	p.T1639I	ZFP106_uc001zpu.3_Missense_Mutation_p.T737I|ZFP106_uc001zpv.3_Missense_Mutation_p.T824I|ZFP106_uc001zpx.3_Missense_Mutation_p.T867I	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	Homo sapiens zinc finger protein 106 homolog (mouse) (ZFP106), mRNA.	1639						nucleolus	zinc ion binding			NS(1)|autonomic_ganglia(1)|breast(3)|central_nervous_system(2)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(17)|lung(24)|ovary(3)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	61		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		TATGTTGAAGGTGACCACAGT	0.512000														59			8		0	0	1	0	0
IDE	3416	broad.mit.edu	37	10	94223677	94223677	+	Missense_Mutation	SNP	A	G	G			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr10:94223677A>G	uc001kia.3	-	20	2648	c.2572T>C	c.(2572-2574)Tac>Cac	p.Y858H	IDE_uc010qnp.2_Missense_Mutation_p.Y303H|IDE_uc001khz.3_Missense_Mutation_p.Y303H	NM_004969	NP_004960	P14735	IDE_HUMAN	Homo sapiens insulin-degrading enzyme (IDE), transcript variant 1, mRNA.	858					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			breast(2)|central_nervous_system(1)|endometrium(2)|kidney(3)|large_intestine(10)|liver(1)|lung(10)|ovary(2)|urinary_tract(2)	33					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTTTCTAGGTAGTGAGGTGGC	0.453000														209			5		0	0	1	0	0
ZNF793	390927	broad.mit.edu	37	19	38028153	38028153	+	Missense_Mutation	SNP	C	G	G			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr19:38028153C>G	uc010efm.3	+	7	1035	c.593C>G	c.(592-594)aCc>aGc	p.T198S	ZNF793_uc010xts.2_Missense_Mutation_p.T198S	NM_001013659	NP_001013681	Q6ZN11	ZN793_HUMAN	Homo sapiens zinc finger protein 793 (ZNF793), mRNA.	198					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			kidney(2)|lung(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AAAGCTTTCACCCAGAACCCG	0.463000														54			11		0	0	1	0	0
FAM75E1	286234	broad.mit.edu	37	9	90500243	90500243	+	Missense_Mutation	SNP	C	G	G			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr9:90500243C>G	uc004app.4	+	3	876	c.841C>G	c.(841-843)Cta>Gta	p.L281V	FAM75E1_uc004apo.1_Missense_Mutation_p.L93V	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	Homo sapiens chromosome 9 open reading frame 79 (C9orf79), mRNA.	281	Pro-rich.					integral to membrane											GAGCTCCCCTCTACACAACCA	0.652000														72			13		0	0	1	0	0
ENO1	2023	broad.mit.edu	37	1	8923329	8923329	+	Missense_Mutation	SNP	T	A	A			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr1:8923329T>A	uc001apj.2	-	9	1663	c.1141A>T	c.(1141-1143)Atc>Ttc	p.I381F	ENO1_uc001api.2_Missense_Mutation_p.I288F|ENO1_uc009vml.2_Missense_Mutation_p.I381F	NM_001428	NP_001188412	P06733	ENOA_HUMAN	Homo sapiens enolase 1, (alpha) (ENO1), transcript variant 1, mRNA.	381					gluconeogenesis|glycolysis|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|response to virus	phosphopyruvate hydratase complex|plasma membrane|sarcomere	DNA binding|magnesium ion binding|phosphopyruvate hydratase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(1)|lung(2)|ovary(2)|stomach(1)|upper_aerodigestive_tract(1)	10	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;2.54e-20)|all_lung(118;2.99e-06)|Lung NSC(185;6.25e-06)|Renal(390;0.000147)|Breast(348;0.00086)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;2.42e-07)|COAD - Colon adenocarcinoma(227;2.78e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		AGGTCAGCGATGAAGGTATCT	0.557000											OREG0013068	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)		37			10		0	0	1	0	0
CCR2	729230	broad.mit.edu	37	3	46399846	46399846	+	Missense_Mutation	SNP	C	A	A			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr3:46399846C>A	uc003cpn.4	+	1	1313	c.828C>A	c.(826-828)aaC>aaA	p.N276K	CCR2_uc003cpm.4_Missense_Mutation_p.N276K|CCR2_uc021wxa.1_Missense_Mutation_p.N276K	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	Homo sapiens chemokine (C-C motif) receptor 2 (CCR2), transcript variant A, mRNA.	276					JAK-STAT cascade|T-helper 17 cell chemotaxis|astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			breast(3)|endometrium(1)|large_intestine(1)|liver(2)|lung(7)	14				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		GCCTGAGTAACTGTGAAAGCA	0.473000														120			47		8.04919e-23	8.52267e-23	1	1	0
CREBBP	1387	broad.mit.edu	37	16	3817815	3817815	+	Silent	SNP	T	C	C			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr16:3817815T>C	uc002cvv.3	-	15	3360	c.3156A>G	c.(3154-3156)aaA>aaG	p.K1052K	CREBBP_uc002cvw.3_Silent_p.K1014K	NM_004380	NP_004371	Q92793	CBP_HUMAN	Homo sapiens CREB binding protein (CREBBP), transcript variant 1, mRNA.	1052					N-terminal peptidyl-lysine acetylation|cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	MyoD binding|histone acetyltransferase activity|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			NS(1)|breast(5)|central_nervous_system(4)|cervix(3)|endometrium(12)|haematopoietic_and_lymphoid_tissue(125)|kidney(5)|large_intestine(32)|lung(43)|ovary(18)|pancreas(2)|prostate(6)|skin(9)|soft_tissue(1)|stomach(3)|upper_aerodigestive_tract(5)|urinary_tract(21)	295		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TCACTTCAGGTTTCTTTTCAT	0.443000			"""T, N, F, Mis, O"""	"""MLL, MORF, RUNXBP2"""	"""ALL, AML, DLBCL, B-NHL """		Rubinstein-Taybi syndrome							355			7		0	0	1	0	0
ADAM23	8745	broad.mit.edu	37	2	207459582	207459582	+	Missense_Mutation	SNP	A	G	G			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr2:207459582A>G	uc002vbq.3	+	22	2423	c.2200A>G	c.(2200-2202)Agc>Ggc	p.S734G	ADAM23_uc010ziv.2_Non-coding_Transcript	NM_003812	NP_003803	O75077	ADA23_HUMAN	Homo sapiens ADAM metallopeptidase domain 23 (ADAM23), mRNA.	734	EGF-like.				cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			NS(2)|breast(1)|endometrium(6)|kidney(3)|large_intestine(5)|liver(2)|lung(22)|ovary(2)|prostate(3)|skin(3)|stomach(1)|urinary_tract(1)	51				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		CCTAAATATGAGCAGCTGTCC	0.483000														147			5		0	0	1	0	0
SARDH	1757	broad.mit.edu	37	9	136550314	136550314	+	Splice_Site	SNP	C	A	A			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr9:136550314C>A	uc004cep.4	-	17	2297	c.2163_splice	c.e17+1	p.L721_splice	SARDH_uc004ceo.3_Splice_Site_p.L721_splice|SARDH_uc011mdo.2_Splice_Site_p.L553_splice|SARDH_uc011mdn.2_Splice_Site_p.L721_splice|SARDH_uc004cen.3_Splice_Site_p.L149_splice	NM_001134707	NP_009032	Q9UL12	SARDH_HUMAN	Homo sapiens sarcosine dehydrogenase (SARDH), nuclear gene encoding mitochondrial protein, transcript variant 2, mRNA.	721					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity			central_nervous_system(1)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(12)|lung(13)|pancreas(1)|prostate(4)|skin(2)|stomach(1)|upper_aerodigestive_tract(3)	44				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		CTGGAACCTACCAGGTGCCCT	0.662000														56			4		3.59834e-05	3.59834e-05	1	1	0
EBF4	57593	broad.mit.edu	37	20	2686302	2686302	+	Silent	SNP	C	T	T			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr20:2686302C>T	uc002wgt.4	+	2	473	c.205C>T	c.(205-207)Ctg>Ttg	p.L69L	EBF4_uc002wgs.4_Non-coding_Transcript	NM_001110514	NP_001103984	Q9BQW3	COE4_HUMAN	Homo sapiens early B-cell factor 4 (EBF4), mRNA.	73					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding										CCACTTCGTGCTGGCCATGTA	0.592000														71			3		0	0	1	0	0
FAM131C	348487	broad.mit.edu	37	1	16386095	16386095	+	Silent	SNP	G	A	A			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr1:16386095G>A	uc001axz.4	-	5	646	c.456C>T	c.(454-456)gtC>gtT	p.V152V		NM_182623	NP_872429	Q96AQ9	F131C_HUMAN	Homo sapiens family with sequence similarity 131, member C (FAM131C), mRNA.	152										large_intestine(2)|lung(2)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	8		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.32e-08)|COAD - Colon adenocarcinoma(227;5.56e-06)|BRCA - Breast invasive adenocarcinoma(304;9.12e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00656)|READ - Rectum adenocarcinoma(331;0.0649)		ACTGCTCGGCGACCCCTGGGG	0.672000														52			12		0	0	1	0	0
MAP1LC3A	84557	broad.mit.edu	37	20	33147203	33147203	+	Missense_Mutation	SNP	C	T	T			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr20:33147203C>T	uc002xaq.1	+	2	303	c.149C>T	c.(148-150)aCc>aTc	p.T50I	MAP1LC3A_uc002xap.1_Missense_Mutation_p.T54I	NM_032514	NP_115903	Q9H492	MLP3A_HUMAN	Homo sapiens microtubule-associated protein 1 light chain 3 alpha (MAP1LC3A), transcript variant 1, mRNA.	50					autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|cytosol|endomembrane system|microtubule	phosphatidylethanolamine binding|protein binding			cervix(1)|kidney(1)|large_intestine(1)|upper_aerodigestive_tract(2)	5						CTGGACAAGACCAAGTTTTTG	0.652000														59			3		0	0	1	0	0
PLEKHM1	9842	broad.mit.edu	37	17	43523003	43523003	+	Silent	SNP	C	G	G			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr17:43523003C>G	uc002ija.3	-	8	2840	c.2670G>C	c.(2668-2670)ctG>ctC	p.L890L	PLEKHM1_uc010wjm.2_Silent_p.L862L|PLEKHM1_uc002ijb.3_Silent_p.L365L|PLEKHM1_uc010wjn.1_Silent_p.L839L	NM_014798	NP_055613	Q9Y4G2	PKHM1_HUMAN	Homo sapiens pleckstrin homology domain containing, family M (with RUN domain) member 1 (PLEKHM1), transcript variant 1, mRNA.	890					intracellular signal transduction	cytoplasm	metal ion binding			breast(1)|central_nervous_system(1)|endometrium(6)|large_intestine(1)|lung(10)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	26	Renal(3;0.0405)					GGATCTGTGTCAGAAACTTCA	0.602000														56			15		0	0	1	0	0
ATG2A	23130	broad.mit.edu	37	11	64664287	64664287	+	Silent	SNP	G	A	A			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr11:64664287G>A	uc001obx.3	-	37	5320	c.5205C>T	c.(5203-5205)gaC>gaT	p.D1735D	ATG2A_uc001obw.3_Silent_p.D500D	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	Homo sapiens ATG2 autophagy related 2 homolog A (S. cerevisiae) (ATG2A), mRNA.	1735							protein binding	p.D1735N(1)		breast(3)|central_nervous_system(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(8)|lung(19)|ovary(3)|prostate(5)|skin(1)|stomach(1)|urinary_tract(3)	55						TCTTGCGGATGTCCTGCAGCC	0.637000											OREG0004026	type=REGULATORY REGION|Gene=BC027481|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay		81			5		0	0	1	0	0
NPAS2	4862	broad.mit.edu	37	2	101607324	101607324	+	Missense_Mutation	SNP	C	T	T	rs141762291		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr2:101607324C>T	uc010yvt.1	+	18	2298	c.2296C>T	c.(2296-2298)Cgg>Tgg	p.R766W	NPAS2_uc002tap.1_Missense_Mutation_p.R701W|NPAS2_uc010fit.1_Intron	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	Homo sapiens neuronal PAS domain protein 2 (NPAS2), mRNA.	701					central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			cervix(1)|endometrium(3)|large_intestine(7)|lung(9)|ovary(3)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	29						CAGGACGGGACGGCAAGTCAA	0.652000														95			3		0	0	1	0	0
ZNF233	353355	broad.mit.edu	37	19	44778459	44778459	+	Missense_Mutation	SNP	C	T	T			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr19:44778459C>T	uc021uvi.1	+	4	1752	c.1646C>T	c.(1645-1647)tCg>tTg	p.S549L	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.3_Intron|ZNF233_uc002oyy.2_Missense_Mutation_p.S364L|ZNF233_uc002oyz.2_Missense_Mutation_p.S549L	NM_001207005	NP_001193934	A6NK53	ZN233_HUMAN	Homo sapiens zinc finger protein 233 (ZNF233), transcript variant 2, mRNA.	549					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.S549S(1)		breast(2)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(6)|lung(4)|skin(3)|urinary_tract(1)	20		Prostate(69;0.0435)|all_neural(266;0.226)				AGTCAGAGTTCGCATCTCCAA	0.468000														76			3		0	0	1	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15580372	15580372	+	Missense_Mutation	SNP	G	A	A			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr19:15580372G>A	uc002nbg.3	-	3	1845	c.1712C>T	c.(1711-1713)cCc>cTc	p.P571L	PGLYRP2_uc002nbf.4_Intron	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	Homo sapiens peptidoglycan recognition protein 2 (PGLYRP2), mRNA.	416					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding	p.P571T(1)		endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(3)|lung(9)|ovary(3)|prostate(2)|skin(3)|stomach(2)|urinary_tract(1)	28						ACAGGCAGGGGGCAGGGGCCT	0.677000														8			8		0	0	1	0	0
SRGAP2	23380	broad.mit.edu	37	1	206516357	206516357	+	Frame_Shift_Del	DEL	A	-	-			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr1:206516357delA	uc001hdy.3	+	0	158	c.157delA	c.(157-159)aaafs	p.K53fs	SRGAP2_uc009xbt.3_5'UTR|SRGAP2_uc010prt.1_5'UTR|SRGAP2_uc001hdx.3_Frame_Shift_Del_p.K53fs|SRGAP2_uc010pru.2_Frame_Shift_Del_p.K53fs	NM_015326	NP_056141	O75044	FNBP2_HUMAN	Homo sapiens SLIT-ROBO Rho GTPase activating protein 2 (SRGAP2), transcript variant 1, mRNA.	140	FCH.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			NS(1)|breast(1)|kidney(1)|lung(1)	4	Breast(84;0.137)					AAGACTCTTTAAAAAGGTACA	0.408													---	1482	---	---	7	---					
CBWD2	150472	broad.mit.edu	37	2	114201378	114201379	+	Frame_Shift_Ins	INS	-	G	G			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr2:114201378_114201379insG	uc002tju.3	+	2	454_455	c.276_277insG	c.(274-279)caaggtfs	p.Q92fs	CBWD2_uc002tjt.2_Frame_Shift_Ins_p.Q92fs|CBWD2_uc010yxw.2_Frame_Shift_Ins_p.Q56fs|CBWD2_uc010fkv.3_Non-coding_Transcript	NM_172003	NP_742000	Q8IUF1	CBWD2_HUMAN	Homo sapiens COBW domain containing 2 (CBWD2), mRNA.	92							ATP binding|protein binding			endometrium(1)|lung(1)	2						CTGTCAGCCAAGGTGGAGAGCT	0.421													---	598	---	---	11	---					
FAM184B	27146	broad.mit.edu	37	4	17654576	17654577	+	Frame_Shift_Ins	INS	-	G	G			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr4:17654576_17654577insG	uc003gpm.4	-	10	2280_2281	c.2067_2068insC	c.(2065-2070)tccagcfs	p.S689fs		NM_015688	NP_056503	Q9ULE4	F184B_HUMAN	Homo sapiens family with sequence similarity 184, member B (FAM184B), mRNA.	689										NS(1)|central_nervous_system(1)|endometrium(1)|prostate(1)	4						AGGCTGTGGCTGGATTCCTTCT	0.564													---	257	---	---	8	---					
TIMD4	91937	broad.mit.edu	37	5	156378731	156378733	+	In_Frame_Del	DEL	GGT	-	-			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr5:156378731_156378733delGGT	uc003lwh.2	-	2	526_528	c.469_471delACC	c.(469-471)accdel	p.T157del	TIMD4_uc010jii.2_In_Frame_Del_p.T157del	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	Homo sapiens T-cell immunoglobulin and mucin domain containing 4 (TIMD4), transcript variant 1, mRNA.	157	Thr-rich.					integral to membrane				NS(1)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(23)|ovary(2)|skin(2)	37	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCATTTGTCGGGTGGTGGTGGGG	0.527													---	758	---	---	8	---					
MAN1B1	11253	broad.mit.edu	37	9	139990718	139990719	+	Frame_Shift_Ins	INS	-	C	C			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr9:139990718_139990719insC	uc004cld.2	+	3	530_531	c.495_496insC	c.(493-498)ccacctfs	p.P165fs	MAN1B1_uc004clc.2_Frame_Shift_Ins_p.P66fs|MAN1B1_uc011meo.1_Frame_Shift_Ins_p.P66fs|MAN1B1_uc011mep.2_Frame_Shift_Ins_p.P165fs|MAN1B1_uc010ncc.2_Non-coding_Transcript	NM_016219	NP_057303	Q9UKM7	MA1B1_HUMAN	Homo sapiens mannosidase, alpha, class 1B, member 1 (MAN1B1), transcript variant 1, mRNA.	165					oligosaccharide metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|protein folding	endoplasmic reticulum membrane|endoplasmic reticulum quality control compartment|integral to membrane	alpha-mannosidase activity|calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			autonomic_ganglia(1)|central_nervous_system(2)|kidney(1)|large_intestine(2)|liver(2)|lung(4)|ovary(2)	14	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;3.08e-05)|Epithelial(140;0.000513)		AGCGGGGACCACCTCACCTGCA	0.574													---	146	---	---	8	---					
MUC5B	727897	broad.mit.edu	37	11	1263525	1263526	+	Frame_Shift_Ins	INS	-	G	G			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr11:1263525_1263526insG	uc001lta.3	+	30	5474_5475	c.5415_5416insG	c.(5413-5418)ggcgggfs	p.G1805fs		NM_002458	NP_002449	Q9HC84	MUC5B_HUMAN	Homo sapiens mucin 5B, oligomeric mucus/gel-forming (MUC5B), mRNA.	1805	7 X Cys-rich subdomain repeats.|Thr-rich.		G -> S (in dbSNP:rs1541314).		cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding			cervix(2)|endometrium(36)|kidney(9)|lung(89)|urinary_tract(1)	137		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GGGTTGCAGGCGGGGACATGGA	0.579													---	172	---	---	9	---					
abParts	0	broad.mit.edu	37	14	106725333	106725333	+	RNA	DEL	A	-	-			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr14:106725333delA	uc021ser.1	-	927		c.22179delT								Parts of antibodies, mostly variable regions.																		TGCTACCACCACTACCACTAA	0.552													---	385	---	---	7	---					
ZNF205	7755	broad.mit.edu	37	16	3169758	3169759	+	Frame_Shift_Ins	INS	-	C	C			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr16:3169758_3169759insC	uc002cub.3	+	6	1232_1233	c.1097_1098insC	c.(1096-1098)tgcfs	p.C366fs	ZNF205_uc002cua.3_Frame_Shift_Ins_p.C366fs	NM_001042428	NP_003447	O95201	ZN205_HUMAN	Homo sapiens zinc finger protein 205 (ZNF205), transcript variant 2, mRNA.	366					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(5)|lung(6)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	20						CCCTACACCTGCCCCGCCTGCC	0.653													---	136	---	---	7	---					
C16orf96	342346	broad.mit.edu	37	16	4625753	4625754	+	Frame_Shift_Ins	INS	-	C	C			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr16:4625753_4625754insC	uc010uxn.2	+	4	1272_1273	c.1272_1273insC	c.(1270-1275)ccaccafs	p.P424fs		NM_001145011	NP_001138483	C9JH24	C9JH24_HUMAN	Homo sapiens chromosome 16 open reading frame 96 (C16orf96), mRNA.	424										NS(1)|breast(1)|endometrium(6)|kidney(1)|skin(3)	12						CCAGGGCCCCACCACCAGCCAC	0.639													---	70	---	---	7	---					
CNTD2	79935	broad.mit.edu	37	19	40730638	40730639	+	Frame_Shift_Ins	INS	-	C	C			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chr19:40730638_40730639insC	uc010xvi.2	-	1	396_397	c.347_348insG	c.(346-348)gtcfs	p.V116fs	CNTD2_uc002ond.3_Intron	NM_024877	NP_079153	B4DX65	B4DX65_HUMAN	Homo sapiens cyclin N-terminal domain containing 2 (CNTD2), transcript variant 2, mRNA.	116					regulation of cyclin-dependent protein kinase activity		protein kinase binding			lung(1)|prostate(1)	2						CGTGCACCTGGACCAGCCAGTC	0.698													---	238	---	---	9	---					
MAGEA12	4111	broad.mit.edu	37	X	151896626	151896626	+	RNA	DEL	A	-	-			TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	g.chrX:151896626delA	uc004fgb.3	-	2		c.363delT						P43365	MAGAC_HUMAN	Homo sapiens melanoma antigen family A, 12 (MAGEA12), transcript variant 3, mRNA.											breast(5)|large_intestine(5)|liver(1)|lung(14)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	28	Acute lymphoblastic leukemia(192;6.56e-05)					GGACATCTTCACCAGACCAGT	0.562													---	679	---	---	9	---					
