Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	validation_method	t_ref_count	validation_status	validation_tumor_sample	t_alt_count	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
GNS	2799	broad.mit.edu	37	12	65152902	65152902	+	Missense_Mutation	SNP	A	G	G			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr12:65152902A>G	uc010ssq.2	-	0	325	c.155T>C	c.(154-156)cTc>cCc	p.L52P	GNS_uc001ssg.4_Missense_Mutation_p.L52P|GNS_uc010ssr.2_Missense_Mutation_p.L52P	NM_002076	NP_002067	P15586	GNS_HUMAN	Homo sapiens glucosamine (N-acetyl)-6-sulfatase (GNS), mRNA.	52						lysosome	N-acetylglucosamine-6-sulfatase activity|metal ion binding|protein binding			central_nervous_system(1)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(5)|liver(1)|lung(4)	15	Lung NSC(1;7.25e-14)|all_lung(1;1.25e-12)		LUAD - Lung adenocarcinoma(6;0.115)	GBM - Glioblastoma multiforme(28;0.0435)		GTCCGTGAGGAGCAGCACCAC	0.657000														111			4		0	0	1	0	0
PRIC285	85441	broad.mit.edu	37	20	62200278	62200278	+	Missense_Mutation	SNP	G	A	A			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr20:62200278G>A	uc002yfm.2	-	5	2055	c.1163C>T	c.(1162-1164)cCg>cTg	p.P388L	PRIC285_uc002yfl.1_5'Flank	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	Homo sapiens peroxisomal proliferator-activated receptor A interacting complex 285 (PRIC285), transcript variant 1, mRNA.	388					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|RNA binding|helicase activity|ribonuclease activity|transcription coactivator activity|zinc ion binding			NS(1)|breast(1)|central_nervous_system(4)|cervix(3)|endometrium(6)|kidney(3)|liver(1)|lung(19)|ovary(1)|prostate(2)|skin(4)|urinary_tract(2)	47	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CAGTGCTCCCGGAGGCGCGAA	0.677000														44			3		0	0	1	0	0
CARD9	64170	broad.mit.edu	37	9	139262146	139262146	+	Silent	SNP	C	T	T			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr9:139262146C>T	uc022bpp.1	-	7	1378	c.1212G>A	c.(1210-1212)gcG>gcA	p.A404A	CARD9_uc004chg.3_Silent_p.A404A|CARD9_uc022bpo.1_Silent_p.A404A|CARD9_uc011mdx.1_Silent_p.A300A	NM_052814	NP_434701	Q9H257	CARD9_HUMAN	Homo sapiens caspase recruitment domain family, member 9 (CARD9), transcript variant 2, mRNA.	404					positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JNK cascade|positive regulation of stress-activated MAPK cascade|regulation of apoptosis	cytoplasm	CARD domain binding|protein homodimerization activity			endometrium(2)|kidney(2)|large_intestine(3)|lung(3)|pancreas(1)|prostate(3)|skin(1)	15		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;4.58e-06)|Epithelial(140;5.65e-06)		CCAGTAGCTGCGCCTCACACT	0.726000														60			10		0	0	1	0	0
DCN	1634	broad.mit.edu	37	12	91550949	91550949	+	Silent	SNP	C	T	T	rs147765043		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr12:91550949C>T	uc001tbt.3	-	4	809	c.555G>A	c.(553-555)ccG>ccA	p.P185P	DCN_uc001tbo.3_Silent_p.P76P|DCN_uc001tbp.3_Intron|DCN_uc001tbq.3_Intron|DCN_uc001tbr.3_Intron|DCN_uc001tbu.3_Silent_p.P185P	NM_133503	NP_598010	P07585	PGS2_HUMAN	Homo sapiens decorin (DCN), transcript variant A2, mRNA.	185					organ morphogenesis	extracellular space				central_nervous_system(2)|cervix(1)|kidney(2)|large_intestine(4)|liver(1)|lung(8)|ovary(1)|skin(1)	20						AGCTCTTCAGCGGATTGGTGC	0.428000														125			4		0	0	1	0	0
TRRAP	8295	broad.mit.edu	37	7	98522828	98522828	+	Missense_Mutation	SNP	G	T	T			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr7:98522828G>T	uc003upp.3	+	21	3126	c.2917G>T	c.(2917-2919)Gcc>Tcc	p.A973S	TRRAP_uc011kis.2_Missense_Mutation_p.A973S|TRRAP_uc003upr.3_Missense_Mutation_p.A665S	NM_001244580	NP_001231509	Q9Y4A5	TRRAP_HUMAN	Homo sapiens transformation/transcription domain-associated protein (TRRAP), transcript variant 1, mRNA.	973					histone H2A acetylation|histone H4 acetylation|histone deubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity	p.A973S(3)|p.A973A(1)		NS(3)|breast(1)|central_nervous_system(10)|endometrium(16)|kidney(7)|large_intestine(36)|liver(1)|lung(54)|ovary(10)|pancreas(1)|prostate(8)|skin(16)|stomach(5)|upper_aerodigestive_tract(6)|urinary_tract(2)	176	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CTTCCTGGTGGCCATGATGAG	0.562000														138			7		6.5536e-12	8.46507e-12	1	1	0
MGC70870	403340	broad.mit.edu	37	GL000205.1	118490	118490	+	RNA	SNP	G	T	T			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chrGL000205.1:118490G>T	uc002kgk.4	+	0		c.1868G>T								Homo sapiens C-terminal binding protein 2 pseudogene (MGC70870), non-coding RNA.																		AGCAGAGAATGCCGGAAGGTA	0.463000														50			3		0.004672	0.004672	1	1	0
MAPT	4137	broad.mit.edu	37	17	44096020	44096020	+	Missense_Mutation	SNP	A	G	G			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr17:44096020A>G	uc002ijr.4	+	12	2307	c.1985A>G	c.(1984-1986)gAc>gGc	p.D662G	MAPT_uc010dau.3_Missense_Mutation_p.D680G|MAPT_uc002ijs.4_Missense_Mutation_p.D345G|MAPT_uc002ijx.4_Missense_Mutation_p.D316G|MAPT_uc021tyv.1_Missense_Mutation_p.D314G|MAPT_uc002ijt.4_Missense_Mutation_p.D287G|MAPT_uc021tyw.1_Missense_Mutation_p.D285G|MAPT_uc002iju.4_Missense_Mutation_p.D256G	NM_016835	NP_058519	P10636	TAU_HUMAN	Homo sapiens microtubule-associated protein tau (MAPT), transcript variant 1, mRNA.	662					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	SH3 domain binding|apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|structural constituent of cytoskeleton			breast(1)|endometrium(4)|kidney(1)|large_intestine(9)|lung(14)|ovary(2)|pancreas(1)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(2)	38		Melanoma(429;0.216)				GAGAAGCTTGACTTCAAGGAC	0.488000														47			4		0	0	1	0	0
TOE1	114034	broad.mit.edu	37	1	45808598	45808598	+	Missense_Mutation	SNP	A	G	G			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr1:45808598A>G	uc009vxq.3	+	6	1419	c.836A>G	c.(835-837)gAc>gGc	p.D279G	MUTYH_uc001cnf.3_5'Flank|MUTYH_uc009vxo.3_5'Flank|MUTYH_uc001cng.3_5'Flank|MUTYH_uc001cnj.3_5'Flank|MUTYH_uc001cni.3_5'Flank|MUTYH_uc001cnh.3_5'Flank|MUTYH_uc001cnl.3_5'Flank|MUTYH_uc009vxp.3_5'Flank|MUTYH_uc001cnn.3_5'Flank|MUTYH_uc001cnm.3_5'Flank|MUTYH_uc001cno.3_5'Flank|MUTYH_uc010oll.2_5'Flank|TOE1_uc010olm.2_Missense_Mutation_p.D199G|TOE1_uc010oln.1_3'UTR|TOE1_uc001cnr.4_Non-coding_Transcript	NM_025077	NP_079353	Q96GM8	TOE1_HUMAN	Homo sapiens target of EGR1, member 1 (nuclear) (TOE1), mRNA.	279						nuclear speck|nucleolus	nucleic acid binding|zinc ion binding			breast(2)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(3)|skin(1)	11	Acute lymphoblastic leukemia(166;0.155)					AGCATGAGGGACCATATTGAT	0.572000														102			4		0	0	1	0	0
MGC70870	403340	broad.mit.edu	37	GL000205.1	117234	117234	+	RNA	SNP	T	A	A			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chrGL000205.1:117234T>A	uc002kgk.4	+	0		c.612T>A								Homo sapiens C-terminal binding protein 2 pseudogene (MGC70870), non-coding RNA.																		ACAGAATTTGTGAGGAATTCG	0.512000														26			4		0	0	1	0	0
C11orf9	745	broad.mit.edu	37	11	61537797	61537797	+	Silent	SNP	A	C	C			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr11:61537797A>C	uc001nsc.1	+	4	636	c.540A>C	c.(538-540)ccA>ccC	p.P180P	C11orf9_uc001nse.1_Silent_p.P171P	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	Homo sapiens chromosome 11 open reading frame 9 (C11orf9), transcript variant 2, mRNA.	180	Pro-rich.				central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			NS(1)|breast(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(5)|lung(12)|prostate(1)	29						ATCCGCCCCCACCTCCAGCCC	0.692000														48			5		0	0	1	0	0
ECT2L	345930	broad.mit.edu	37	6	139164271	139164271	+	Silent	SNP	G	A	A			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr6:139164271G>A	uc003qif.2	+	5	823	c.498G>A	c.(496-498)acG>acA	p.T166T	ECT2L_uc021zfx.1_Silent_p.T166T|ECT2L_uc011edq.1_Silent_p.T97T	NM_001077706	NP_001181966	Q008S8	ECT2L_HUMAN	Homo sapiens epithelial cell transforming sequence 2 oncogene-like (ECT2L), transcript variant 1, mRNA.	166					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(3)|kidney(1)|large_intestine(7)|lung(12)|skin(1)|upper_aerodigestive_tract(1)	30						CTTATGGGACGCTGAATGAAC	0.453000			"""N, Splice, Mis"""		ETP ALL									35			3		0	0	1	0	0
MGC70870	403340	broad.mit.edu	37	GL000205.1	117787	117787	+	RNA	SNP	G	A	A			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chrGL000205.1:117787G>A	uc002kgk.4	+	0		c.1165G>A								Homo sapiens C-terminal binding protein 2 pseudogene (MGC70870), non-coding RNA.																		GGCCTTTGCAGGATGGGATCG	0.567000														36			4		0	0	1	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887448	9887448	+	Silent	SNP	C	T	T	rs34819368		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr18:9887448C>T	uc002koi.4	+	1	1421	c.972C>T	c.(970-972)ccC>ccT	p.P324P	TXNDC2_uc002koh.4_Silent_p.P257P|TXNDC2_uc021ugx.1_Silent_p.P257P	NM_001098529	NP_115619	Q86VQ3	TXND2_HUMAN	Homo sapiens thioredoxin domain containing 2 (spermatozoa) (TXNDC2), transcript variant 2, mRNA.	324	22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			NS(1)|central_nervous_system(1)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(4)|lung(9)|ovary(2)|pancreas(1)|skin(7)|urinary_tract(1)	31						CCATCCAGCCCAAGGAGGGTG	0.597000														42			4		0	0	1	0	0
SPIB	6689	broad.mit.edu	37	19	50931537	50931537	+	Missense_Mutation	SNP	C	A	A			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr19:50931537C>A	uc002psd.3	+	5	758	c.733C>A	c.(733-735)Cgc>Agc	p.R245S	SPIB_uc021uyc.1_Missense_Mutation_p.R214S|SPIB_uc002pse.3_3'UTR|SPIB_uc010ycc.2_Missense_Mutation_p.R154S	NM_003121	NP_003112	Q01892	SPIB_HUMAN	Homo sapiens Spi-B transcription factor (Spi-1/PU.1 related) (SPIB), transcript variant 1, mRNA.	245					regulation of transcription from RNA polymerase II promoter	cytoplasm|microtubule cytoskeleton|nucleus	sequence-specific DNA binding			breast(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(1)|lung(8)	14		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		CAAGGTCAAGCGCAAGCTCAC	0.682000														126			7		9.70103e-10	1.11382e-09	1	1	0
PPP1R2	5504	broad.mit.edu	37	3	195256683	195256683	+	Missense_Mutation	SNP	C	T	T			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr3:195256683C>T	uc003fup.3	-	1	518	c.142G>A	c.(142-144)Gat>Aat	p.D48N	PPP1R2_uc003fuq.4_Missense_Mutation_p.D48N	NM_006241	NP_006232	P41236	IPP2_HUMAN	Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 2 (PPP1R2), mRNA.	48	Required for binding PPP1CC (By similarity).				glycogen metabolic process|regulation of phosphoprotein phosphatase activity|regulation of signal transduction		protein binding|protein serine/threonine phosphatase inhibitor activity			endometrium(2)|kidney(1)|large_intestine(1)|urinary_tract(2)	6	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)		Epithelial(36;2.64e-22)|all cancers(36;2.69e-20)|OV - Ovarian serous cystadenocarcinoma(49;3.52e-19)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;9.55e-05)		TTCATTTCATCCCACTTCTGG	0.333000														118			102		0	0	1	0	0
C3P1	388503	broad.mit.edu	37	19	10166291	10166291	+	RNA	SNP	G	A	A			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr19:10166291G>A	uc010dwx.2	+	15		c.1884G>A								Homo sapiens complement component 3 precursor pseudogene (C3P1), non-coding RNA.									p.V202I(1)		endometrium(4)|large_intestine(2)|lung(6)|urinary_tract(1)	13						TGTGTTCCGCGTCTTTGCCCT	0.562000														171			17		0	0	1	0	0
PDCD2L	84306	broad.mit.edu	37	19	34895578	34895578	+	Missense_Mutation	SNP	C	T	T			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr19:34895578C>T	uc002nvj.3	+	1	166	c.133C>T	c.(133-135)Ccc>Tcc	p.P45S		NM_032346	NP_115722	Q9BRP1	PDD2L_HUMAN	Homo sapiens programmed cell death 2-like (PDCD2L), mRNA.	45						cytoplasm				breast(2)|kidney(1)|large_intestine(4)|lung(1)|ovary(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	11	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			CGTGGCTGCGCCCAGGCCCGT	0.692000														68			32		0	0	1	0	0
AP2B1	163	broad.mit.edu	37	17	34009754	34009754	+	Missense_Mutation	SNP	C	T	T			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr17:34009754C>T	uc002hjr.3	+	16	2512	c.2323C>T	c.(2323-2325)Cca>Tca	p.P775S	AP2B1_uc002hjq.3_Missense_Mutation_p.P789S|AP2B1_uc010wci.2_Missense_Mutation_p.P751S|AP2B1_uc002hjs.3_Missense_Mutation_p.P718S|AP2B1_uc002hjt.3_Missense_Mutation_p.P789S|AP2B1_uc010ctv.3_Missense_Mutation_p.P789S|AP2B1_uc010wcj.2_Missense_Mutation_p.P526S	NM_001282	NP_001273	P63010	AP2B1_HUMAN	Homo sapiens adaptor-related protein complex 2, beta 1 subunit (AP2B1), transcript variant 2, mRNA.	775					axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|coated pit|cytosol|endocytic vesicle membrane|plasma membrane	clathrin binding|protein transporter activity			NS(1)|breast(1)|endometrium(4)|kidney(2)|large_intestine(5)|lung(6)|ovary(3)|pancreas(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	28		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		CATCCATACACCACTGATGCC	0.483000														38			3		0	0	1	0	0
PRPF6	24148	broad.mit.edu	37	20	62648170	62648170	+	Missense_Mutation	SNP	A	G	G			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr20:62648170A>G	uc002yho.3	+	11	1787	c.1619A>G	c.(1618-1620)aAg>aGg	p.K540R	PRPF6_uc002yhp.3_Missense_Mutation_p.K540R	NM_012469	NP_036601	O94906	PRP6_HUMAN	Homo sapiens PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) (PRPF6), mRNA.	540					assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP|catalytic step 2 spliceosome|nucleoplasm	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity	p.R539W(1)		breast(1)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(14)|ovary(2)|pancreas(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	35	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					GAAGATCGGAAGCATACCTGG	0.547000														162			5		0	0	1	0	0
EPB42	2038	broad.mit.edu	37	15	43501531	43501531	+	Missense_Mutation	SNP	C	A	A			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr15:43501531C>A	uc001zrb.4	-	5	1163	c.863G>T	c.(862-864)gGc>gTc	p.G288V	EPB42_uc001zqz.4_5'UTR|EPB42_uc001zra.4_Missense_Mutation_p.G258V|EPB42_uc010udm.2_Missense_Mutation_p.G180V	NM_000119	NP_000110	P16452	EPB42_HUMAN	Homo sapiens erythrocyte membrane protein band 4.2 (EPB42), transcript variant 1, mRNA.	258					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			endometrium(3)|large_intestine(6)|lung(6)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	20		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		TCGGCCTCGGCCGGTGAGCCA	0.677000														150			7		5.16669e-11	6.40669e-11	1	1	0
XCL1	6375	broad.mit.edu	37	1	168550330	168550330	+	Missense_Mutation	SNP	C	A	A			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr1:168550330C>A	uc001gfo.2	+	2	382	c.217C>A	c.(217-219)Caa>Aaa	p.Q73K		NM_002995	NP_002986	P47992	XCL1_HUMAN	Homo sapiens chemokine (C motif) ligand 1 (XCL1), mRNA.	73					CD4-positive, alpha-beta T cell proliferation|CD8-positive, alpha-beta T cell proliferation|T-helper 1 cell cytokine production|T-helper 2 cell cytokine production|cell-cell signaling|cellular response to interleukin-4|cellular response to transforming growth factor beta stimulus|immunoglobulin production in mucosal tissue|lymphocyte chemotaxis|negative regulation of T cell cytokine production|negative regulation of T-helper 1 cell activation|negative regulation of interferon-gamma production|negative regulation of interleukin-2 production|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|neutrophil chemotaxis|positive regulation of B cell chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell cytokine production|positive regulation of T cell mediated cytotoxicity|positive regulation of activated T cell proliferation|positive regulation of granzyme A production|positive regulation of granzyme B production|positive regulation of interleukin-10 production|positive regulation of natural killer cell chemotaxis|positive regulation of neutrophil chemotaxis|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of thymocyte migration|positive regulation of transforming growth factor-beta production|regulation of inflammatory response|release of sequestered calcium ion into cytosol|response to virus	extracellular space	chemokine activity|protein homodimerization activity			kidney(2)|lung(7)|upper_aerodigestive_tract(1)	10	all_hematologic(923;0.208)					TGCTGATCCACAAGCCACATG	0.483000														133			4		1.36565e-18	1.84065e-18	1	1	0
LECT2	3950	broad.mit.edu	37	5	135283165	135283165	+	Missense_Mutation	SNP	T	C	C			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr5:135283165T>C	uc003lbe.1	-	3	512	c.311A>G	c.(310-312)tAc>tGc	p.Y104C	FBXL21_uc003lbc.3_Intron	NM_002302	NP_002293	O14960	LECT2_HUMAN	Homo sapiens leukocyte cell-derived chemotaxin 2 (LECT2), mRNA.	104					chemotaxis|skeletal system development	cytoplasm|extracellular space				large_intestine(1)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TGGCTTAATGTAGAACATTTT	0.308000														95			3		0	0	1	0	0
MDN1	23195	broad.mit.edu	37	6	90353740	90353740	+	Missense_Mutation	SNP	G	T	T			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr6:90353740G>T	uc003pnn.1	-	101	16891	c.16775C>A	c.(16774-16776)gCc>gAc	p.A5592D		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	Homo sapiens MDN1, midasin homolog (yeast) (MDN1), mRNA.	5592					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			NS(1)|breast(13)|central_nervous_system(2)|cervix(3)|endometrium(22)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(52)|liver(1)|lung(83)|ovary(10)|pancreas(1)|prostate(10)|skin(6)|stomach(3)|upper_aerodigestive_tract(3)|urinary_tract(2)	218		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		GTGGTCAGAGGCTGTCACCAA	0.473000														91			7		9.70103e-10	1.11382e-09	1	1	0
CDK2AP2	10263	broad.mit.edu	37	11	67274865	67274865	+	Missense_Mutation	SNP	C	T	T			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr11:67274865C>T	uc001oma.3	-	2	833	c.284G>A	c.(283-285)aGc>aAc	p.S95N	PITPNM1_uc001oly.3_5'Flank|PITPNM1_uc001olz.3_5'Flank|CDK2AP2_uc009yry.3_Non-coding_Transcript	NM_005851	NP_005842	O75956	CDKA2_HUMAN	Homo sapiens cyclin-dependent kinase 2 associated protein 2 (CDK2AP2), mRNA.	95										lung(1)	1						GGCGCTCTTGCTGCCAGCATA	0.597000														111			4		0	0	1	0	0
SMARCA1	6594	broad.mit.edu	37	X	128614736	128614736	+	Missense_Mutation	SNP	C	T	T			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chrX:128614736C>T	uc011muk.1	-	18	2497	c.2384G>A	c.(2383-2385)cGc>cAc	p.R795H	SMARCA1_uc004eun.4_Missense_Mutation_p.R795H|SMARCA1_uc004eup.4_Missense_Mutation_p.R783H|SMARCA1_uc011mul.1_Missense_Mutation_p.R783H	NM_003069	NP_003060	P28370	SMCA1_HUMAN	Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 (SMARCA1), transcript variant 1, mRNA.	795					ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			biliary_tract(1)|breast(1)|central_nervous_system(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(11)|liver(1)|lung(13)|ovary(5)|prostate(1)|skin(1)	45						CTCAAATAAGCGTGGTGGGAA	0.323000														78			3		0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195508903	195508903	+	Missense_Mutation	SNP	G	A	A			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr3:195508903G>A	uc021xjp.1	-	1	9704	c.9548C>T	c.(9547-9549)aCg>aTg	p.T3183M	MUC4_uc021xjm.1_5'Flank|MUC4_uc021xjn.1_5'Flank|MUC4_uc021xjo.1_5'Flank|MUC4_uc021xjg.1_5'Flank|MUC4_uc021xjh.1_5'Flank|MUC4_uc021xji.1_5'Flank|MUC4_uc021xjj.1_5'Flank|MUC4_uc021xjk.1_5'Flank|MUC4_uc021xjl.1_5'Flank|MUC4_uc003fvo.3_Intron|MUC4_uc003fvp.3_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	Homo sapiens mucin 4, cell surface associated (MUC4), transcript variant 1, mRNA.	938					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity	p.T3183I(1)|p.T3183M(1)		NS(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(3)|kidney(1)|large_intestine(5)|lung(23)|ovary(3)|prostate(8)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	51	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		AGGAAGAGGCGTGGTGTCACC	0.592000														39			3		0	0	1	0	0
KIAA2018	205717	broad.mit.edu	37	3	113375013	113375013	+	Missense_Mutation	SNP	A	T	T			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr3:113375013A>T	uc003eam.3	-	6	5927	c.5516T>A	c.(5515-5517)cTc>cAc	p.L1839H	KIAA2018_uc003eal.3_Missense_Mutation_p.L1783H	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	Homo sapiens KIAA2018 (KIAA2018), mRNA.	1839					regulation of transcription, DNA-dependent	membrane|nucleus	DNA binding|calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			NS(1)|breast(3)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(13)|liver(1)|lung(30)|ovary(8)|skin(5)|upper_aerodigestive_tract(4)|urinary_tract(2)	80						ATGTTCTGAGAGTGACCTCTG	0.443000														133			5		0	0	1	0	0
EGR3	1960	broad.mit.edu	37	8	22548132	22548132	+	Missense_Mutation	SNP	G	T	T			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr8:22548132G>T	uc003xcm.1	-	1	1376	c.1018C>A	c.(1018-1020)Cgc>Agc	p.R340S	EGR3_uc011kzn.1_Missense_Mutation_p.R302S|EGR3_uc011kzo.2_Missense_Mutation_p.R286S	NM_004430	NP_001186810	Q06889	EGR3_HUMAN	Homo sapiens early growth response 3 (EGR3), transcript variant 1, mRNA.	340					circadian rhythm|muscle organ development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|endometrium(1)|large_intestine(2)|lung(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	10		Prostate(55;0.0421)|Breast(100;0.102)		Colorectal(74;0.0145)|BRCA - Breast invasive adenocarcinoma(99;0.053)|COAD - Colon adenocarcinoma(73;0.0608)		GCAAACTTGCGCCCGCAGAAC	0.632000														78			7		1.12685e-05	1.24758e-05	1	1	0
KRT40	125115	broad.mit.edu	37	17	39140079	39140079	+	Splice_Site	SNP	C	A	A			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr17:39140079C>A	uc010cxh.1	-	3	608	c.447_splice	c.e3+1	p.K149_splice	KRT40_uc002hvq.1_Splice_Site	NM_182497	NP_872303	Q6A162	K1C40_HUMAN	Homo sapiens keratin 40 (KRT40), mRNA.	149	Coil 1B.|Rod.					intermediate filament	structural molecule activity			endometrium(1)|large_intestine(2)|lung(4)|prostate(1)|upper_aerodigestive_tract(1)	9		Breast(137;0.00043)				GGACACAGACCTTTTGTTGGA	0.453000														102			6		8.12818e-05	8.68875e-05	1	1	0
CNGB1	1258	broad.mit.edu	37	16	57984389	57984389	+	Silent	SNP	T	C	C			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr16:57984389T>C	uc002emt.2	-	12	995	c.930A>G	c.(928-930)gaA>gaG	p.E310E	CNGB1_uc010cdh.2_Silent_p.E304E	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	Homo sapiens cyclic nucleotide gated channel beta 1 (CNGB1), transcript variant 1, mRNA.	310					sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(7)|cervix(2)|endometrium(4)|kidney(2)|large_intestine(11)|liver(1)|lung(12)|ovary(1)|pancreas(1)|prostate(2)|skin(5)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(2)	54						CCCAGGGCGGTTCAACCTCCT	0.552000														105			4		0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25294500	25294500	+	Missense_Mutation	SNP	G	T	T			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr22:25294500G>T	uc003abg.2	+	19	2906	c.2749G>T	c.(2749-2751)Gtg>Ttg	p.V917L	SGSM1_uc010guu.1_Missense_Mutation_p.V862L|SGSM1_uc003abh.2_Missense_Mutation_p.V856L|SGSM1_uc003abj.2_Missense_Mutation_p.V801L|SGSM1_uc003abi.1_Missense_Mutation_p.V837L	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	Homo sapiens small G protein signaling modulator 1 (SGSM1), transcript variant 1, mRNA.	917	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			NS(2)|breast(1)|central_nervous_system(2)|endometrium(5)|kidney(2)|large_intestine(14)|lung(10)|ovary(2)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)	41						GGTGTCCCCTGTGTCTTCCAG	0.562000														59			3		0.000602214	0.000622288	1	1	0
CCDC37	348807	broad.mit.edu	37	3	126142182	126142183	+	Frame_Shift_Ins	INS	-	C	C			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr3:126142182_126142183insC	uc010hsg.1	+	10	1159_1160	c.1100_1101insC	c.(1099-1101)atcfs	p.I367fs	CCDC37_uc003eiu.1_Frame_Shift_Ins_p.I366fs	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	Homo sapiens coiled-coil domain containing 37 (CCDC37), mRNA.	366								p.T369fs*36(1)		NS(1)|autonomic_ganglia(1)|breast(1)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(8)|lung(5)|ovary(1)|skin(3)	23				GBM - Glioblastoma multiforme(114;0.166)		AACTCTCCCATCCCCCCCACGC	0.653													---	183	---	---	7	---					
GFM1	85476	broad.mit.edu	37	3	158362472	158362473	+	Frame_Shift_Ins	INS	-	C	C			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr3:158362472_158362473insC	uc003fce.3	+	0	156_157	c.49_50insC	c.(49-51)gccfs	p.A17fs	GFM1_uc003fcd.3_Frame_Shift_Ins_p.A17fs|GFM1_uc003fcg.3_5'Flank	NM_024996	NP_079272	Q96RP9	EFGM_HUMAN	Homo sapiens G elongation factor, mitochondrial 1 (GFM1), nuclear gene encoding mitochondrial protein, mRNA.	17					mitochondrial translational elongation	mitochondrion	GTP binding|GTPase activity|translation elongation factor activity			breast(1)|central_nervous_system(1)|endometrium(1)|large_intestine(5)|lung(9)|ovary(3)|urinary_tract(2)	22			Lung(72;0.00309)|LUSC - Lung squamous cell carcinoma(72;0.0043)			GCGCGGAAGGGCCCCCGCCTCC	0.649											OREG0015898	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	---	202	---	---	9	---					
HNRPDL	9987	broad.mit.edu	37	4	83350758	83350759	+	Frame_Shift_Ins	INS	-	C	C			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr4:83350758_83350759insC	uc003hmr.3	-	0	620_621	c.85_86insG	c.(85-87)catfs	p.H29fs	ENOPH1_uc003hmv.3_5'Flank|ENOPH1_uc003hmx.3_5'Flank|HNRPDL_uc003hmq.3_Non-coding_Transcript|HNRPDL_uc003hmt.3_Frame_Shift_Ins_p.H29fs	NM_031372	NP_112740	O14979	HNRDL_HUMAN	Homo sapiens heterogeneous nuclear ribonucleoprotein D-like (HNRPDL), transcript variant 2, mRNA.	29					RNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|heterogeneous nuclear ribonucleoprotein complex	double-stranded DNA binding|nucleotide binding|poly(A) RNA binding|protein binding|single-stranded DNA binding			breast(2)|endometrium(2)|kidney(1)|lung(5)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	14		Hepatocellular(203;0.114)				cggccgccAATGGGAGAGGCTG	0.757													---	4	---	---	3	---					
HNRPDL	9987	broad.mit.edu	37	4	83350764	83350764	+	Frame_Shift_Del	DEL	A	-	-			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr4:83350764delA	uc003hmr.3	-	0	615	c.80delT	c.(79-81)ctcfs	p.L27fs	ENOPH1_uc003hmv.3_5'Flank|ENOPH1_uc003hmx.3_5'Flank|HNRPDL_uc003hmq.3_Non-coding_Transcript|HNRPDL_uc003hmt.3_Frame_Shift_Del_p.L27fs	NM_031372	NP_112740	O14979	HNRDL_HUMAN	Homo sapiens heterogeneous nuclear ribonucleoprotein D-like (HNRPDL), transcript variant 2, mRNA.	27					RNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|heterogeneous nuclear ribonucleoprotein complex	double-stranded DNA binding|nucleotide binding|poly(A) RNA binding|protein binding|single-stranded DNA binding			breast(2)|endometrium(2)|kidney(1)|lung(5)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	14		Hepatocellular(203;0.114)				ccAATGGGAGAGGCTGCGGGA	0.756													---	4	---	---	3	---					
HAPLN1	1404	broad.mit.edu	37	5	82940353	82940354	+	Frame_Shift_Ins	INS	-	C	C			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr5:82940353_82940354insC	uc003kim.3	-	2	674_675	c.603_604insG	c.(601-606)gggctgfs	p.G201fs	HAPLN1_uc003kin.3_Frame_Shift_Ins_p.G201fs	NM_001884	NP_001875	P10915	HPLN1_HUMAN	Homo sapiens hyaluronan and proteoglycan link protein 1 (HAPLN1), mRNA.	201	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(12)|liver(1)|lung(15)|ovary(1)|prostate(1)|skin(1)	34		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		CACCAGTCCAGCCCGCCCCGCC	0.619													---	181	---	---	7	---					
FOXD4	2298	broad.mit.edu	37	9	117398	117400	+	In_Frame_Del	DEL	GGC	-	-			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr9:117398_117400delGGC	uc003zfz.3	-	0	1018_1020	c.720_722delGCC	c.(718-723)cagcca>caa	p.P241del		NM_207305	NP_997188	Q12950	FOXD4_HUMAN	Homo sapiens forkhead box D4 (FOXD4), mRNA.	241	Pro-rich.				axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			endometrium(5)|large_intestine(2)|lung(3)|prostate(1)|skin(3)	14	all_lung(41;0.218)	all_cancers(5;0.0395)|Acute lymphoblastic leukemia(5;1.91e-07)|all_hematologic(5;1.95e-06)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		CCCCGGGACTGGCTGCGGCGGGG	0.734													---	4	---	---	2	---					
LCN1	3933	broad.mit.edu	37	9	138415126	138415127	+	Frame_Shift_Ins	INS	-	G	G	rs146192526		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr9:138415126_138415127insG	uc022bpk.1	+	2	330_331	c.270_271insG	c.(268-273)gacgagfs	p.D90fs	LCN1_uc022bpj.1_Frame_Shift_Ins_p.D90fs|LCN1_uc004cfz.2_Frame_Shift_Ins_p.D90fs|LCN1_uc004cga.2_Frame_Shift_Ins_p.D90fs	NM_001252618	NP_001239547	P31025	LCN1_HUMAN	Homo sapiens lipocalin 1 (LCN1), transcript variant 3, mRNA.	90					proteolysis|response to stimulus|sensory perception of taste	extracellular region	cysteine-type endopeptidase inhibitor activity|transporter activity			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(2)|lung(5)	13		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.54e-08)|Epithelial(140;5.25e-08)|all cancers(34;9.27e-07)|READ - Rectum adenocarcinoma(205;0.155)		AGAAAACTGACGAGCCGGGAAA	0.644													---	88	---	---	7	---					
TRAFD1	10906	broad.mit.edu	37	12	112578793	112578794	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr12:112578793_112578794delGA	uc001ttp.3	+	4	494_495	c.408_409delGA	c.(406-411)gggagafs	p.G136fs	TRAFD1_uc001tto.3_Frame_Shift_Del_p.G136fs|TRAFD1_uc009zwb.2_Frame_Shift_Del_p.G136fs|TRAFD1_uc010syj.1_Intron	NM_006700	NP_006691	O14545	TRAD1_HUMAN	Homo sapiens TRAF-type zinc finger domain containing 1 (TRAFD1), transcript variant 2, mRNA.	136					negative regulation of innate immune response	intracellular	protein binding|zinc ion binding			kidney(5)|large_intestine(3)|lung(5)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)	17						AAGTTTGTGGGAGAGAGGGGGA	0.480													---	224	---	---	8	---					
HNF1A	6927	broad.mit.edu	37	12	121437368	121437369	+	Frame_Shift_Ins	INS	-	C	C			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr12:121437368_121437369insC	uc001tzg.3	+	8	1729_1730	c.1706_1707insC	c.(1705-1707)agcfs	p.S569fs	HNF1A_uc010szn.2_Frame_Shift_Ins_p.S576fs|HNF1A_uc021rfa.1_Frame_Shift_Ins_p.S600fs|HNF1A_uc021rfb.1_Frame_Shift_Ins_p.S441fs|HNF1A_uc021rfc.1_Non-coding_Transcript	NM_000545	NP_000536	P20823	HNF1A_HUMAN	Homo sapiens HNF1 homeobox A (HNF1A), mRNA.	569					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding	p.P568L(1)		breast(3)|central_nervous_system(2)|cervix(1)|endometrium(8)|large_intestine(19)|liver(175)|lung(9)|ovary(2)|prostate(1)|urinary_tract(1)	221	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CACGTCCCCAGCCAGGACCCTG	0.688									Hepatic Adenoma, Familial Clustering of				---	156	---	---	7	---					
SSC5D	284297	broad.mit.edu	37	19	56029595	56029596	+	Frame_Shift_Ins	INS	-	C	C			TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	g.chr19:56029595_56029596insC	uc002qlg.4	+	13	4039_4040	c.3952_3953insC	c.(3952-3954)gatfs	p.D1318fs		NM_001144950	NP_001138422	A1L4H1	SRCRL_HUMAN	Homo sapiens scavenger receptor cysteine rich domain containing (5 domains) (SSC5D), transcript variant 1, mRNA.	1318	Pro-rich.|Thr-rich.					extracellular region|membrane	scavenger receptor activity			NS(1)|breast(1)|skin(2)	4						cactactcctgatcccaccacg	0.609													---	98	---	---	9	---					
