Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7568296	7568296	+	Missense_Mutation	SNP	C	A	A	rs137880529	byFrequency	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7629920	7629920	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215855551	215855551	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94577263	94577263	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48256677	48256677	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC6P1	653190	broad.mit.edu	37	16	18597348	18597348	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABR	29	broad.mit.edu	37	17	913927	913927	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN3	9311	broad.mit.edu	37	7	150749496	150749496	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT12	134526	broad.mit.edu	37	5	80631635	80631635	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX3	8310	broad.mit.edu	37	4	8401271	8401271	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131303597	131303597	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM1	116285	broad.mit.edu	37	16	20702413	20702413	+	Nonsense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20490093	20490094	+	Intron	DNP	GC	AA	AA			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM29	11086	broad.mit.edu	37	4	175898086	175898086	+	Silent	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM32	203102	broad.mit.edu	37	8	39068732	39068732	+	Silent	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106235882	106235882	+	RNA	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107113878	107113878	+	RNA	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM7	8756	broad.mit.edu	37	8	24304566	24304566	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5236988	5236988	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100636863	100636863	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77359817	77359817	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43945745	43945745	+	5'Flank	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1230908	1230908	+	Missense_Mutation	SNP	C	T	T	rs146024921		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7724743	7724743	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH4	127	broad.mit.edu	37	4	100062826	100062826	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFM	173	broad.mit.edu	37	4	74360839	74360839	+	Intron	SNP	T	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFM	173	broad.mit.edu	37	4	74360842	74360842	+	Intron	SNP	T	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100356810	100356810	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62299707	62299707	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH3A2	224	broad.mit.edu	37	17	19555892	19555892	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG8	79053	broad.mit.edu	37	11	77825490	77825490	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73680829	73680829	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC7	51434	broad.mit.edu	37	12	110825741	110825741	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41580611	41580611	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	113748339	113748339	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114203804	114203804	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD12	23253	broad.mit.edu	37	18	9195663	9195663	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD13C	81573	broad.mit.edu	37	1	70819936	70819936	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD23	200539	broad.mit.edu	37	2	97509718	97509718	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37438414	37438414	+	Intron	SNP	C	T	T	rs149293826	by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD55	79722	broad.mit.edu	37	5	55396111	55396111	+	Missense_Mutation	SNP	G	A	A	rs143274111	by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA2	302	broad.mit.edu	37	15	60656670	60656670	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1G1	164	broad.mit.edu	37	16	71772945	71772945	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1S2	8905	broad.mit.edu	37	X	15863649	15863649	+	Intron	DEL	A	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2A2	161	broad.mit.edu	37	11	981252	981252	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLF	200558	broad.mit.edu	37	2	68740196	68740196	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APPBP2	10513	broad.mit.edu	37	17	58571907	58571907	+	Nonsense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP18	93663	broad.mit.edu	37	6	129899655	129899655	+	3'UTR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP19	84986	broad.mit.edu	37	10	99019290	99019290	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11353980	11353980	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155932075	155932075	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC4	55130	broad.mit.edu	37	10	28151619	28151619	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB9	140462	broad.mit.edu	37	X	15262539	15262539	+	3'UTR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASL	435	broad.mit.edu	37	7	65552720	65552720	+	Silent	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197113130	197113130	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176934459	176934459	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD3C	219293	broad.mit.edu	37	1	1390998	1390998	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6B	1388	broad.mit.edu	37	6	32086644	32086644	+	Splice_Site	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATOH1	474	broad.mit.edu	37	4	94750361	94750361	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10A	57194	broad.mit.edu	37	15	25963457	25963457	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113459422	113459422	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42474743	42474743	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B1	490	broad.mit.edu	37	12	89992625	89992626	+	Intron	INS	-	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36051326	36051326	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77218047	77218047	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76918761	76918761	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142266758	142266758	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN1	6310	broad.mit.edu	37	6	16327410	16327410	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AURKAIP1	54998	broad.mit.edu	37	1	1309389	1309389	+	Silent	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP2	10458	broad.mit.edu	37	17	79058648	79058648	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136599636	136599636	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND6	221336	broad.mit.edu	37	6	56857323	56857323	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND7	222389	broad.mit.edu	37	10	13494493	13494493	+	Intron	SNP	A	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN2	51411	broad.mit.edu	37	12	51685316	51685316	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43312827	43312827	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPHL	670	broad.mit.edu	37	6	3127546	3127546	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79937526	79937526	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf90	118611	broad.mit.edu	37	10	128153147	128153147	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76246861	76246861	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf28	122258	broad.mit.edu	37	13	113086925	113086925	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf37	145407	broad.mit.edu	37	14	58605023	58605024	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf46	124783	broad.mit.edu	37	17	43332645	43332645	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1S	716	broad.mit.edu	37	12	7178038	7178038	+	3'UTR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf106	55765	broad.mit.edu	37	1	200880411	200880411	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179425799	179425799	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf52	151477	broad.mit.edu	37	2	232378288	232378288	+	5'UTR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf26	84319	broad.mit.edu	37	3	99890778	99890778	+	Intron	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf41	60684	broad.mit.edu	37	4	184604010	184604010	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5	727	broad.mit.edu	37	9	123782507	123782507	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf23	79614	broad.mit.edu	37	5	32789898	32789898	+	3'UTR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf225	619208	broad.mit.edu	37	6	112420622	112420622	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf48	50854	broad.mit.edu	37	6	31805197	31805197	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf11	54586	broad.mit.edu	37	9	27296927	27296927	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACHD1	57685	broad.mit.edu	37	1	65098409	65098409	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49079432	49079432	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201022790	201022790	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG5	27091	broad.mit.edu	37	17	64881158	64881158	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86063645	86063645	+	Intron	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159169551	159169551	+	Silent	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCA	796	broad.mit.edu	37	11	14990398	14990398	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO1	57658	broad.mit.edu	37	12	54115361	54115361	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CANT1	124583	broad.mit.edu	37	17	76993299	76993299	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN12	147968	broad.mit.edu	37	19	39225520	39225520	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN1	4076	broad.mit.edu	37	11	34101277	34101277	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC1	55259	broad.mit.edu	37	12	25307169	25307169	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC13	152206	broad.mit.edu	37	3	42781129	42781129	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28459595	28459595	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28605357	28605357	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCHCR1	54535	broad.mit.edu	37	6	31125269	31125269	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB2	9133	broad.mit.edu	37	15	59399928	59399928	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCRN4L	25819	broad.mit.edu	37	4	139966314	139966314	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD37	951	broad.mit.edu	37	19	49839067	49839067	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157804207	157804207	+	Silent	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24491768	24491768	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19473721	19473721	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25570157	25570157	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH3	1001	broad.mit.edu	37	16	68721600	68721600	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61851450	61851450	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF2	10659	broad.mit.edu	37	10	11363183	11363183	+	Silent	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13124735	13124735	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP97	79598	broad.mit.edu	37	3	101443479	101443479	+	5'Flank	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFB	629	broad.mit.edu	37	6	31918140	31918140	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHEK2	11200	broad.mit.edu	37	22	29130657	29130657	+	Missense_Mutation	SNP	C	G	G	rs151218932	by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHPT1	56994	broad.mit.edu	37	12	102123092	102123092	+	3'UTR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120288115	120288115	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN6	1185	broad.mit.edu	37	1	11867151	11867151	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCNKB	1188	broad.mit.edu	37	1	16375117	16375117	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN14	23562	broad.mit.edu	37	21	37858376	37858376	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN2	9075	broad.mit.edu	37	X	106171458	106171458	+	5'UTR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC17A	388512	broad.mit.edu	37	19	14706002	14706002	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4F	165530	broad.mit.edu	37	2	71046424	71046424	+	Intron	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC2	1193	broad.mit.edu	37	X	154522221	154522221	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP2	7461	broad.mit.edu	37	7	73800964	73800964	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMTM5	116173	broad.mit.edu	37	14	23846633	23846633	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21609204	21609204	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT2	4848	broad.mit.edu	37	12	70732251	70732251	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNST	163882	broad.mit.edu	37	1	246829096	246829096	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146997306	146997306	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBL	23242	broad.mit.edu	37	7	51096436	51096436	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121292901	121292901	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70642594	70642594	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70856882	70856882	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94026967	94026967	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139647221	139647221	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109765821	109765821	+	Intron	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48370306	48370306	+	Silent	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189859511	189859511	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189918795	189918795	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130300779	130300779	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBB3	1417	broad.mit.edu	37	22	25601130	25601130	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37322239	37322239	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSH1	1442	broad.mit.edu	37	17	61973979	61973979	+	5'UTR	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113349928	113349928	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113392716	113392716	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113702264	113702264	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113702266	113702266	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPG5	10675	broad.mit.edu	37	3	47618951	47618951	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE5	4253	broad.mit.edu	37	14	39796255	39796255	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCFL	140690	broad.mit.edu	37	20	56073662	56073662	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCFL	140690	broad.mit.edu	37	20	56090879	56090879	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80390275	80390275	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11159692	11159692	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYBB	1536	broad.mit.edu	37	X	37639333	37639333	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	22933913	22933913	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143998972	143998972	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A13	1553	broad.mit.edu	37	19	41594577	41594577	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2B6	1555	broad.mit.edu	37	19	41522587	41522587	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2E1	1571	broad.mit.edu	37	10	135371748	135371748	+	3'UTR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A43	64816	broad.mit.edu	37	7	99445922	99445922	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH1	9267	broad.mit.edu	37	17	76677204	76677204	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DARC	2532	broad.mit.edu	37	1	159175986	159175986	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAXX	1616	broad.mit.edu	37	6	33289672	33289672	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	122000939	122000939	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDB1	1642	broad.mit.edu	37	11	61077645	61077645	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDC	1644	broad.mit.edu	37	7	50596840	50596840	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX31	64794	broad.mit.edu	37	9	135470216	135470216	+	3'UTR	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX46	9879	broad.mit.edu	37	5	134130846	134130846	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB119	245932	broad.mit.edu	37	20	29965242	29965242	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140219376	140219376	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4C	55667	broad.mit.edu	37	9	19324446	19324446	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB31	25861	broad.mit.edu	37	9	117241034	117241034	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS11	79154	broad.mit.edu	37	17	34955412	34955412	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS3	9249	broad.mit.edu	37	1	12640463	12640463	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX58	79132	broad.mit.edu	37	17	40259997	40259997	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61513077	61513077	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO3	1735	broad.mit.edu	37	14	102028757	102028757	+	3'UTR	SNP	C	A	A	rs140242267	by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	107846973	107846973	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLL3	10683	broad.mit.edu	37	19	39996085	39996085	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32662524	32662524	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38743851	38743851	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11671895	11671895	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111555894	111555894	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L3	147991	broad.mit.edu	37	19	32954755	32954755	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28584107	28584107	+	Splice_Site	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28971276	28971276	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7577113	7577113	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I2	1781	broad.mit.edu	37	2	172583209	172583209	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71778902	71778902	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137783472	137783472	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44073894	44073894	+	Silent	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFR3A	23167	broad.mit.edu	37	8	132967937	132967937	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF1AD	84285	broad.mit.edu	37	11	65766889	65766889	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3B	8662	broad.mit.edu	37	7	2408975	2408975	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3B	8662	broad.mit.edu	37	7	2409266	2409266	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79411949	79411949	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN3	90187	broad.mit.edu	37	20	39993607	39993607	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENO3	2027	broad.mit.edu	37	17	4858676	4858676	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD1	953	broad.mit.edu	37	10	97602241	97602241	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPGN	255324	broad.mit.edu	37	4	75174213	75174213	+	5'UTR	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97311586	97311586	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	94120927	94120927	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	94128937	94128937	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB4	2050	broad.mit.edu	37	7	100410537	100410537	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERG	2078	broad.mit.edu	37	21	39755277	39755277	+	3'UTR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERLEC1	27248	broad.mit.edu	37	2	54045061	54045061	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERMP1	79956	broad.mit.edu	37	9	5805687	5805687	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216692692	216692692	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133802457	133802457	+	Intron	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZH1	2145	broad.mit.edu	37	17	40880977	40880977	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197021794	197021794	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197021821	197021821	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169495043	169495043	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107B	83641	broad.mit.edu	37	10	14563710	14563710	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A1	92689	broad.mit.edu	37	4	38945163	38945163	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131521473	131521473	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM160B1	57700	broad.mit.edu	37	10	116605137	116605137	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169A	26049	broad.mit.edu	37	5	74096661	74096661	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190B	54462	broad.mit.edu	37	10	86151180	86151180	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM194A	131831	broad.mit.edu	37	3	150421725	150421725	+	5'UTR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM21B	55747	broad.mit.edu	37	10	47919937	47919937	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156590341	156590341	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156592974	156592974	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM74A3	728495	broad.mit.edu	37	9	40716105	40716105	+	RNA	SNP	C	A	A	rs2990399		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83H	286077	broad.mit.edu	37	8	144810988	144810988	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9A	171482	broad.mit.edu	37	X	8764317	8764317	+	Silent	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92616312	92616312	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92616507	92616507	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO43	286151	broad.mit.edu	37	8	101154184	101154184	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157716565	157716565	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125107185	125107185	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125113293	125113293	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152276956	152276956	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ36000	284124	broad.mit.edu	37	17	21911066	21911066	+	RNA	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240305890	240305890	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89404908	89404908	+	Intron	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39262739	39262739	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12724793	12724793	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162376131	162376131	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTHL17	53940	broad.mit.edu	37	X	31089831	31089831	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXR2	9513	broad.mit.edu	37	17	7495463	7495463	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD3	5349	broad.mit.edu	37	19	35612270	35612270	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD8	8325	broad.mit.edu	37	10	35928960	35928960	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46994725	46994725	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161116181	161116181	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAGE12J	729396	broad.mit.edu	37	X	49208488	49208488	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT9	50614	broad.mit.edu	37	12	132688113	132688113	+	Silent	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173734719	173734719	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS6	2621	broad.mit.edu	37	13	114535424	114535424	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153784620	153784620	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22748973	22748974	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCA	25801	broad.mit.edu	37	2	163215992	163215992	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCC2	9648	broad.mit.edu	37	2	109113598	109113598	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120587749	120587749	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT1	2650	broad.mit.edu	37	9	79117887	79117887	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179757681	179757681	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55196612	55196612	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGA3	23163	broad.mit.edu	37	17	73235425	73235425	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHITM	27069	broad.mit.edu	37	10	85909790	85909790	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHRHR	2692	broad.mit.edu	37	7	31008552	31008552	+	Splice_Site	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GK	2710	broad.mit.edu	37	X	30683544	30683544	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GK	2710	broad.mit.edu	37	X	30695576	30695576	+	Intron	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GK	2710	broad.mit.edu	37	X	30746966	30746966	+	3'UTR	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPR2	51292	broad.mit.edu	37	14	24707945	24707945	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAI1	2770	broad.mit.edu	37	7	79846625	79846626	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAZ	2781	broad.mit.edu	37	22	23438485	23438485	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG2	54331	broad.mit.edu	37	14	52433384	52433384	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC4	2239	broad.mit.edu	37	X	132437228	132437228	+	Silent	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPD1	2819	broad.mit.edu	37	12	50498490	50498490	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPNMB	10457	broad.mit.edu	37	7	23309545	23309545	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR115	221393	broad.mit.edu	37	6	47681809	47681809	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154056105	154056105	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR64	10149	broad.mit.edu	37	X	19087029	19087029	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPSM1	26086	broad.mit.edu	37	9	139228961	139228961	+	Silent	SNP	C	T	T	rs138071426		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9858390	9858390	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13906652	13906652	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146480566	146480566	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMB	55876	broad.mit.edu	37	17	38062106	38062106	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMC	56169	broad.mit.edu	37	8	130761682	130761682	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2IRD1	9569	broad.mit.edu	37	7	73935550	73935550	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HACL1	26061	broad.mit.edu	37	3	15610157	15610157	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN4	404037	broad.mit.edu	37	19	19368865	19368865	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN4	404037	broad.mit.edu	37	19	19369648	19369648	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAX1	10456	broad.mit.edu	37	1	154247616	154247616	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCLS1	3059	broad.mit.edu	37	3	121351263	121351263	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC1	3065	broad.mit.edu	37	1	32793077	32793077	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5A	25938	broad.mit.edu	37	14	31792927	31792927	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEG1	57493	broad.mit.edu	37	3	124731533	124731533	+	Nonsense_Mutation	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	63921153	63921153	+	Intron	DEL	T	-	-	rs67330370		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC3	8916	broad.mit.edu	37	4	89574133	89574133	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BB	3018	broad.mit.edu	37	6	26043664	26043664	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176317681	176317681	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-C	3107	broad.mit.edu	37	6	31237199	31237199	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186023062	186023062	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPH3	3189	broad.mit.edu	37	10	70100900	70100900	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100481409	100481410	+	Intron	DNP	CC	AA	AA			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSDL1	83693	broad.mit.edu	37	16	84164680	84164680	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSF1	3297	broad.mit.edu	37	8	145537624	145537624	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSF2	3298	broad.mit.edu	37	6	122753015	122753015	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63256551	63256551	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53571852	53571853	+	Intron	DNP	AG	TA	TA			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53652067	53652067	+	Intron	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI44L	10964	broad.mit.edu	37	1	79101010	79101010	+	Intron	DEL	T	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA21	3452	broad.mit.edu	37	9	21166475	21166475	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFN1	91156	broad.mit.edu	37	1	201184625	201184625	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18691759	18691759	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111670594	111670594	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F9	56300	broad.mit.edu	37	2	113738764	113738764	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143129922	143129922	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INS-IGF2	723961	broad.mit.edu	37	11	2182027	2182027	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156814999	156814999	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP1	8826	broad.mit.edu	37	15	91016085	91016085	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS1	3667	broad.mit.edu	37	2	227661440	227661440	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITFG2	55846	broad.mit.edu	37	12	2927444	2927444	+	Splice_Site	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52183654	52183654	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15714556	15714556	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54780208	54780208	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK2	3717	broad.mit.edu	37	9	5126726	5126726	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAM2	58494	broad.mit.edu	37	21	27066141	27066141	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD6	89890	broad.mit.edu	37	13	41704889	41704889	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163279773	163279773	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78846169	78846169	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196459025	196459025	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10600447	10600447	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHSRP	8570	broad.mit.edu	37	19	6422415	6422415	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0100	9703	broad.mit.edu	37	17	26962061	26962061	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123140583	123140583	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1328	57536	broad.mit.edu	37	18	34539178	34539178	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94101017	94101017	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1524	57650	broad.mit.edu	37	3	108271090	108271090	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36874333	36874333	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1804	84451	broad.mit.edu	37	1	233518100	233518100	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF14	9928	broad.mit.edu	37	1	200574420	200574420	+	Silent	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91469259	91469259	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39763679	39763679	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4A	24137	broad.mit.edu	37	X	69516870	69516870	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57963493	57963493	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57963761	57963761	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158064211	158064211	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK5	25818	broad.mit.edu	37	19	51447019	51447019	+	Silent	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRK1	22914	broad.mit.edu	37	12	10532187	10532187	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNG1	3827	broad.mit.edu	37	3	186459269	186459269	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT20	54474	broad.mit.edu	37	17	39032579	39032579	+	3'UTR	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT26	353288	broad.mit.edu	37	17	38926533	38926533	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT78	196374	broad.mit.edu	37	12	53242431	53242432	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-9	386676	broad.mit.edu	37	21	46047816	46047816	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP27-1	643812	broad.mit.edu	37	21	31709806	31709806	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL3	84456	broad.mit.edu	37	6	130378627	130378627	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129722556	129722556	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66067031	66067031	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54756308	54756308	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMCH1	22998	broad.mit.edu	37	4	41687770	41687770	+	Silent	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090506	238090506	+	RNA	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC388955	388955	broad.mit.edu	37	2	63849695	63849695	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82434718	82434718	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62935760	62935760	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151749341	151749341	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT3	345193	broad.mit.edu	37	4	110790971	110790971	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46917795	46917795	+	Silent	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC23	10233	broad.mit.edu	37	12	6994300	6994300	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC23	10233	broad.mit.edu	37	12	6994304	6994304	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC27	80313	broad.mit.edu	37	10	134165306	134165306	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A	9884	broad.mit.edu	37	17	44399672	44399672	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85623501	85623501	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM1	347730	broad.mit.edu	37	2	80529996	80529996	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235972070	235972070	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL4	131375	broad.mit.edu	37	3	42448235	42448235	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA6	4105	broad.mit.edu	37	X	151870189	151870189	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED2	10916	broad.mit.edu	37	X	54836552	54836552	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGIX	79917	broad.mit.edu	37	X	49022353	49022353	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1B	4131	broad.mit.edu	37	5	71493960	71493960	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1LC3C	440738	broad.mit.edu	37	1	242159524	242159524	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K4	6416	broad.mit.edu	37	17	12019131	12019131	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	137041542	137041542	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71201084	71201084	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST1	22983	broad.mit.edu	37	19	12975954	12975954	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138728982	138728982	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCRS1	10445	broad.mit.edu	37	12	49959219	49959219	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13	9969	broad.mit.edu	37	17	60032987	60032987	+	Intron	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED15	51586	broad.mit.edu	37	22	20920814	20920816	+	In_Frame_Del	DEL	CAG	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEPCE	56257	broad.mit.edu	37	7	100028300	100028300	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL4	64863	broad.mit.edu	37	18	2544761	2544761	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD4	148808	broad.mit.edu	37	1	205567043	205567043	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5	4249	broad.mit.edu	37	2	135119848	135119848	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12264315	12264315	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKL2	57496	broad.mit.edu	37	16	14340374	14340374	+	Silent	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKLN1	4289	broad.mit.edu	37	7	131083888	131083888	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2526337	2526337	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP13	4322	broad.mit.edu	37	11	102825034	102825034	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP28	79148	broad.mit.edu	37	17	34094989	34094989	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90844465	90844465	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90857868	90857868	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108829688	108829688	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORN5	254956	broad.mit.edu	37	9	124962075	124962075	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP1	4354	broad.mit.edu	37	X	154018236	154018236	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX3	117195	broad.mit.edu	37	11	18159487	18159487	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL37	51253	broad.mit.edu	37	1	54665901	54665901	+	5'UTR	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS15	64960	broad.mit.edu	37	1	36921528	36921528	+	Intron	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS9	64965	broad.mit.edu	37	2	105654526	105654526	+	5'UTR	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRS2	57380	broad.mit.edu	37	6	24403518	24403518	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A5	64232	broad.mit.edu	37	11	60215231	60215231	+	Nonstop_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A8B	83661	broad.mit.edu	37	11	60482498	60482498	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH3	4437	broad.mit.edu	37	5	80083234	80083234	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTO1	25821	broad.mit.edu	37	6	74175962	74175962	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9065535	9065535	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1085772	1085772	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC4	4585	broad.mit.edu	37	3	195475820	195475820	+	Silent	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1272929	1272929	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL2	4605	broad.mit.edu	37	20	42338633	42338633	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81102525	81102525	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81102736	81102736	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10351278	10351278	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23853733	23853733	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10299657	10299657	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47375931	47375931	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST4	23522	broad.mit.edu	37	10	76789116	76789116	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101753132	101753132	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT10	55226	broad.mit.edu	37	11	34167643	34167643	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78513530	78513530	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16890827	16890827	+	Intron	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPH	23397	broad.mit.edu	37	2	97019094	97019094	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCF1	653361	broad.mit.edu	37	7	74193606	74193606	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCF4	4689	broad.mit.edu	37	22	37272127	37272127	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCL	4691	broad.mit.edu	37	2	232322434	232322435	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCL	4691	broad.mit.edu	37	2	232322437	232322437	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA3	8202	broad.mit.edu	37	20	46279830	46279830	+	Silent	SNP	G	A	A	rs147918555		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFV1	4723	broad.mit.edu	37	11	67379312	67379312	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21319315	21319315	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK11	79858	broad.mit.edu	37	3	130873949	130873949	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK5	341676	broad.mit.edu	37	13	52639651	52639651	+	Silent	SNP	G	A	A	rs56086016		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC2	4773	broad.mit.edu	37	20	50048903	50048903	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56370564	56370564	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOMO1	23420	broad.mit.edu	37	16	14951444	14951444	+	Silent	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89224424	89224424	+	5'UTR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPDC1	56654	broad.mit.edu	37	9	139934347	139934347	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPFFR2	10886	broad.mit.edu	37	4	72897519	72897519	+	5'Flank	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2F2	7026	broad.mit.edu	37	15	96877535	96877535	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRD1	4898	broad.mit.edu	37	1	52260370	52260370	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRD1	4898	broad.mit.edu	37	1	52260373	52260373	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105152952	105152952	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50692738	50692738	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50850703	50850703	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	51056826	51056826	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG2	84628	broad.mit.edu	37	9	135042216	135042216	+	5'UTR	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88483966	88483966	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT21	11051	broad.mit.edu	37	16	56485055	56485055	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH3	11248	broad.mit.edu	37	17	47656116	47656116	+	Silent	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS1	4938	broad.mit.edu	37	12	113344789	113344789	+	5'UTR	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228432156	228432156	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228494928	228494928	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167689648	167689648	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53624888	53624888	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR12D2	26529	broad.mit.edu	37	6	29364387	29364387	+	5'Flank	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247836020	247836020	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A14	135941	broad.mit.edu	37	7	143826661	143826661	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B6	26212	broad.mit.edu	37	6	27925441	27925441	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247694862	247694862	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55433216	55433216	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4S2	219431	broad.mit.edu	37	11	55418616	55418616	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51I1	390063	broad.mit.edu	37	11	5462512	5462512	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51L1	119682	broad.mit.edu	37	11	5020955	5020955	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52B4	143496	broad.mit.edu	37	11	4388697	4388697	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52R1	119695	broad.mit.edu	37	11	4825626	4825626	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B17	219965	broad.mit.edu	37	11	58126125	58126126	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5F1	338674	broad.mit.edu	37	11	55761175	55761176	+	Frame_Shift_Ins	INS	-	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5K3	403277	broad.mit.edu	37	3	98110219	98110219	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L2	26338	broad.mit.edu	37	11	55595424	55595424	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7C1	26664	broad.mit.edu	37	19	14910638	14910638	+	Frame_Shift_Del	DEL	A	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56127760	56127760	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP3	347741	broad.mit.edu	37	17	72943237	72943237	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	31819497	31819497	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	31851205	31851205	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK1	5058	broad.mit.edu	37	11	77060267	77060267	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAM	5066	broad.mit.edu	37	5	102326009	102326009	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPD7	11044	broad.mit.edu	37	5	6743935	6743935	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150780226	150780226	+	Splice_Site	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91131800	91131800	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55664898	55664898	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140552718	140552718	+	Missense_Mutation	SNP	C	A	A	rs139238267		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140553224	140553224	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB3	56102	broad.mit.edu	37	5	140750984	140750984	+	Silent	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165827131	165827131	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72289312	72289312	+	Silent	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20705093	20705093	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHX	8050	broad.mit.edu	37	11	34969210	34969210	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA4	9601	broad.mit.edu	37	7	148702338	148702338	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5B	23047	broad.mit.edu	37	13	33268412	33268412	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER1	5187	broad.mit.edu	37	17	8049893	8049893	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK1	5230	broad.mit.edu	37	X	77380808	77380809	+	Intron	DNP	GG	TT	TT			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHEX	5251	broad.mit.edu	37	X	22108476	22108476	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF2	5253	broad.mit.edu	37	9	96427980	96427980	+	Silent	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGT	51604	broad.mit.edu	37	20	44048080	44048080	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIH1D1	55011	broad.mit.edu	37	19	49951179	49951179	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIR	8544	broad.mit.edu	37	X	15443970	15443971	+	Intron	INS	-	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL3	440822	broad.mit.edu	37	22	25115649	25115649	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PJA1	64219	broad.mit.edu	37	X	68382067	68382067	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2L1	9033	broad.mit.edu	37	10	102051229	102051229	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186919766	186919767	+	Intron	INS	-	TT	TT			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL2	23228	broad.mit.edu	37	3	17056292	17056292	+	Silent	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	145049532	145049532	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK3	1263	broad.mit.edu	37	1	45267448	45267448	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208276662	208276662	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PML	5371	broad.mit.edu	37	15	74315494	74315494	+	Missense_Mutation	SNP	G	A	A	rs146344435		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPT1	87178	broad.mit.edu	37	2	55874526	55874526	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53103686	53103686	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121	9883	broad.mit.edu	37	7	72410097	72410097	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PORCN	64840	broad.mit.edu	37	X	48372655	48372656	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIL2	23759	broad.mit.edu	37	22	22037690	22037690	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R13B	23368	broad.mit.edu	37	14	104251283	104251283	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R1	9989	broad.mit.edu	37	18	9550019	9550019	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPRC1	23082	broad.mit.edu	37	10	103898375	103898375	+	Splice_Site	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF5	343068	broad.mit.edu	37	1	13052978	13052978	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDX3	10935	broad.mit.edu	37	10	120928109	120928109	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAA2	5563	broad.mit.edu	37	1	57173139	57173139	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT8	56341	broad.mit.edu	37	12	3692200	3692200	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROP1	5626	broad.mit.edu	37	5	177419796	177419797	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF3	9129	broad.mit.edu	37	1	150325221	150325221	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRX1	5396	broad.mit.edu	37	1	170699588	170699588	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE	58497	broad.mit.edu	37	1	150990709	150990709	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG2	5670	broad.mit.edu	37	19	43576027	43576027	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43418921	43418921	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43421920	43421920	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43262225	43262225	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB8	5696	broad.mit.edu	37	6	32808690	32808690	+	3'UTR	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMC3IP	29893	broad.mit.edu	37	17	40729714	40729714	+	5'UTR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME3	10197	broad.mit.edu	37	17	40985622	40985622	+	5'UTR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCD1	26024	broad.mit.edu	37	7	99040744	99040744	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCH1	5727	broad.mit.edu	37	9	98218542	98218542	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD3	374308	broad.mit.edu	37	10	27703039	27703039	+	Silent	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTDSS1	9791	broad.mit.edu	37	8	97299165	97299165	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209307219	209307219	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK7	5754	broad.mit.edu	37	6	43106763	43106763	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214656221	214656221	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214705599	214705599	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN3	5774	broad.mit.edu	37	9	112168882	112168882	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8713574	8713574	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55711859	55711859	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71286464	71286464	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36143822	36143822	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP10	57610	broad.mit.edu	37	16	67763221	67763221	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3L	202151	broad.mit.edu	37	5	36257147	36257147	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF6	51735	broad.mit.edu	37	5	130815330	130815330	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF6	51735	broad.mit.edu	37	5	130883763	130883763	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASD2	23551	broad.mit.edu	37	22	35943006	35943006	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM9	23543	broad.mit.edu	37	22	36236214	36236214	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCCD1	91433	broad.mit.edu	37	15	91505103	91505103	+	3'UTR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELA	5970	broad.mit.edu	37	11	65423106	65423106	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103202032	103202032	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103207077	103207078	+	Frame_Shift_Ins	INS	-	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43615230	43615230	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC1	5981	broad.mit.edu	37	4	39291474	39291474	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC4	5984	broad.mit.edu	37	3	186508238	186508238	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS20	8601	broad.mit.edu	37	8	54799999	54799999	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241099977	241099977	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK1	83732	broad.mit.edu	37	6	7395331	7395331	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT1	6016	broad.mit.edu	37	1	155874261	155874261	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT1	6016	broad.mit.edu	37	1	155880281	155880281	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31410943	31410943	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF115	27246	broad.mit.edu	37	1	145663206	145663206	+	Silent	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF165	494470	broad.mit.edu	37	18	44030673	44030673	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77366446	77366446	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124761263	124761263	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117715578	117715578	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10468217	10468217	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP2	6102	broad.mit.edu	37	X	46719490	46719490	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPA4	29935	broad.mit.edu	37	X	96139496	96139496	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPLP0	6175	broad.mit.edu	37	12	120635308	120635308	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS20	6224	broad.mit.edu	37	8	56986128	56986128	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KB2	6199	broad.mit.edu	37	11	67200256	67200256	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS9	6203	broad.mit.edu	37	19	54705039	54705039	+	5'UTR	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRBP1	6238	broad.mit.edu	37	20	17602407	17602407	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	108913185	108913185	+	3'UTR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60193817	60193817	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237919600	237919600	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23904722	23904722	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD4A	23034	broad.mit.edu	37	14	55169444	55169445	+	Intron	DNP	GG	TT	TT			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARDH	1757	broad.mit.edu	37	9	136595421	136595421	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAP	22937	broad.mit.edu	37	3	47465464	47465464	+	Nonsense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3B	55800	broad.mit.edu	37	11	123513397	123513397	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCP2	6342	broad.mit.edu	37	1	53446082	53446082	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCYL3	57147	broad.mit.edu	37	1	169839332	169839332	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23A	10484	broad.mit.edu	37	14	39536549	39536549	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3E	9723	broad.mit.edu	37	7	83098449	83098449	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3E	9723	broad.mit.edu	37	7	83277718	83277718	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122646762	122646762	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115783224	115783224	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERINC3	10955	broad.mit.edu	37	20	43150529	43150529	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42530624	42530624	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD8	387893	broad.mit.edu	37	12	123892056	123892056	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L2	26470	broad.mit.edu	37	16	29891088	29891088	+	Intron	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7423923	7423923	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS17A	8227	broad.mit.edu	37	X	1712956	1712956	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS8	6433	broad.mit.edu	37	12	132262626	132262626	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67147549	67147549	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGPL1	8879	broad.mit.edu	37	10	72614367	72614367	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL3	6457	broad.mit.edu	37	15	84255823	84255823	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM2	357	broad.mit.edu	37	X	9862757	9862757	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC7	27036	broad.mit.edu	37	19	51645668	51645668	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIK3	23387	broad.mit.edu	37	11	116747572	116747572	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232564316	232564316	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPB2	284759	broad.mit.edu	37	20	1459268	1459268	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164780173	164780173	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164781358	164781358	+	Intron	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1074626	1074626	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A3	10786	broad.mit.edu	37	6	25862233	25862233	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22399054	22399054	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A45	283130	broad.mit.edu	37	11	65149533	65149533	+	5'UTR	SNP	G	C	C	rs112246159	by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A2	10568	broad.mit.edu	37	4	25676292	25676292	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A3	142680	broad.mit.edu	37	9	140128971	140128971	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A4	120103	broad.mit.edu	37	11	92917548	92917548	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC41A1	254428	broad.mit.edu	37	1	205765991	205765991	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC41A3	54946	broad.mit.edu	37	3	125741507	125741507	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75862186	75862186	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A4	57210	broad.mit.edu	37	8	142229749	142229749	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC46A1	113235	broad.mit.edu	37	17	26732045	26732045	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A18	348932	broad.mit.edu	37	5	1225638	1225638	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A1	6541	broad.mit.edu	37	13	30106979	30106979	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A7	84679	broad.mit.edu	37	X	46495108	46495108	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2B1	11309	broad.mit.edu	37	11	74876893	74876893	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2B1	11309	broad.mit.edu	37	11	74880441	74880441	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO3A1	28232	broad.mit.edu	37	15	92706072	92706072	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101834533	101834533	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20600010	20600010	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC2	6601	broad.mit.edu	37	12	56567459	56567459	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC2	6601	broad.mit.edu	37	12	56567617	56567617	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC2	6601	broad.mit.edu	37	12	56568419	56568419	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1B	27127	broad.mit.edu	37	22	45755800	45755800	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAR-I	100170222	broad.mit.edu	37	3	190594231	190594231	+	5'Flank	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127729612	127729612	+	Silent	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-3	767579	broad.mit.edu	37	14	101418279	101418279	+	5'Flank	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25313016	25313016	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD7	692076	broad.mit.edu	37	17	33900660	33900660	+	5'Flank	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX25	83891	broad.mit.edu	37	4	186231881	186231881	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX32	254122	broad.mit.edu	37	11	65619186	65619186	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121457173	121457173	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214149307	214149307	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	215274946	215274946	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXE	171489	broad.mit.edu	37	X	140786482	140786482	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATS1	221409	broad.mit.edu	37	6	44336165	44336165	+	Silent	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35670195	35670195	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220353374	220353374	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPERT	220082	broad.mit.edu	37	13	46276900	46276900	+	Intron	SNP	G	C	C	rs78790580	byFrequency;by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK5	11005	broad.mit.edu	37	5	147475378	147475378	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPNS1	83985	broad.mit.edu	37	16	28995569	28995569	+	Silent	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK1	6695	broad.mit.edu	37	5	136448300	136448300	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158596722	158596722	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158612572	158612572	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30734165	30734165	+	Intron	SNP	T	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPX2	27286	broad.mit.edu	37	X	99921880	99921880	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPX	8406	broad.mit.edu	37	X	38016192	38016192	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2815417	2815417	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2815544	2815544	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX5	6758	broad.mit.edu	37	X	48056800	48056800	+	5'Flank	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM	8027	broad.mit.edu	37	10	17747606	17747606	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK4	6789	broad.mit.edu	37	20	43703736	43703736	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48818749	48818749	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX2	2054	broad.mit.edu	37	12	131306161	131306161	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1A1	6817	broad.mit.edu	37	16	28620117	28620117	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT6B1	391365	broad.mit.edu	37	2	37406698	37406698	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUV39H1	6839	broad.mit.edu	37	X	48558965	48558965	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYAP1	94056	broad.mit.edu	37	X	16778405	16778405	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP3	50511	broad.mit.edu	37	12	102122937	102122937	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYK	6850	broad.mit.edu	37	9	93629456	93629456	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64676053	64676053	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT10	341359	broad.mit.edu	37	12	33592449	33592449	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT1	6857	broad.mit.edu	37	12	79702650	79702650	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL5	94122	broad.mit.edu	37	X	37985950	37985950	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR2	9287	broad.mit.edu	37	6	132939094	132939094	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123844906	123844906	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D16	125058	broad.mit.edu	37	17	77921509	77921509	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCD	6904	broad.mit.edu	37	17	80772804	80772804	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCK	93627	broad.mit.edu	37	4	107216202	107216202	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX20	57057	broad.mit.edu	37	7	35293192	35293192	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79286509	79286509	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF20	6942	broad.mit.edu	37	22	42607837	42607837	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCOF1	6949	broad.mit.edu	37	5	149758369	149758369	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCOF1	6949	broad.mit.edu	37	5	149758590	149758590	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDO2	6999	broad.mit.edu	37	4	156832598	156832598	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179660081	179660081	+	3'UTR	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX10	54881	broad.mit.edu	37	9	103109394	103109394	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX11	56159	broad.mit.edu	37	X	69898725	69898725	+	Nonsense_Mutation	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2C	7022	broad.mit.edu	37	20	55209278	55209278	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFE3	7030	broad.mit.edu	37	X	48896717	48896717	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB1	7040	broad.mit.edu	37	19	41858709	41858709	+	Missense_Mutation	SNP	A	G	G	rs111033611		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM4	7047	broad.mit.edu	37	3	44951754	44951754	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169648870	169648870	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11630169	11630169	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138033625	138033625	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIPARP	25976	broad.mit.edu	37	3	156396125	156396125	+	Silent	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR8	51311	broad.mit.edu	37	X	12940138	12940138	+	Silent	SNP	G	A	A	rs148097000		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO1	54499	broad.mit.edu	37	1	165788947	165788947	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129558563	129558563	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM209	84928	broad.mit.edu	37	7	129825206	129825206	+	Silent	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM90B	79953	broad.mit.edu	37	20	24646222	24646222	+	3'UTR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM9	252839	broad.mit.edu	37	1	201104701	201104701	+	3'UTR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMSL3	7117	broad.mit.edu	37	X	12994289	12994289	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC18	84629	broad.mit.edu	37	7	5360157	5360157	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32017396	32017396	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP2B	7155	broad.mit.edu	37	3	25672356	25672356	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	T	T	rs28934578		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF7	84231	broad.mit.edu	37	16	2226669	2226669	+	3'UTR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55038289	55038289	+	3'UTR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM50	135892	broad.mit.edu	37	7	72732771	72732771	+	Intron	DEL	G	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230643781	230643781	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77435402	77435402	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98609988	98609988	+	3'UTR	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC22D1	8848	broad.mit.edu	37	13	45149890	45149890	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC22D4	81628	broad.mit.edu	37	7	100074837	100074837	+	Intron	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC22D4	81628	broad.mit.edu	37	7	100074841	100074841	+	Intron	SNP	A	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21B	79809	broad.mit.edu	37	2	166758115	166758115	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21B	79809	broad.mit.edu	37	2	166769264	166769264	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179438298	179438298	+	Silent	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179455351	179455351	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179466608	179466608	+	Splice_Site	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179584073	179584073	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB2A	7280	broad.mit.edu	37	6	3154049	3154049	+	3'UTR	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP4	27229	broad.mit.edu	37	15	43669153	43669153	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP5	114791	broad.mit.edu	37	15	22866791	22866791	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUSC3	7991	broad.mit.edu	37	8	15398024	15398024	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TWF1	5756	broad.mit.edu	37	12	44194195	44194195	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYR	7299	broad.mit.edu	37	11	89018116	89018116	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBTFL1	642623	broad.mit.edu	37	11	89819274	89819275	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1L	23074	broad.mit.edu	37	12	100453138	100453138	+	Silent	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK1	8408	broad.mit.edu	37	12	132404472	132404472	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK4	54986	broad.mit.edu	37	3	41961235	41961235	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17531182	17531182	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215972398	215972398	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216496818	216496818	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179482019	179482019	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55534842	55534846	+	Intron	DEL	TTGTG	-	-	rs145466302	by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP33	23032	broad.mit.edu	37	1	78166924	78166924	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP53	54532	broad.mit.edu	37	4	120177781	120177781	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP5	8078	broad.mit.edu	37	12	6964802	6964802	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37626676	37626676	+	IGR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38934269	38934269	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42680964	42680964	+	IGR	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	92814266	92814266	+	IGR	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48485696	48485696	+	IGR	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48972932	48972932	+	IGR	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49897862	49897862	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51483375	51483375	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51483377	51483377	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55972725	55972725	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59976108	59976108	+	IGR	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6079388	6079388	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	86736569	86736569	+	IGR	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89467128	89467128	+	IGR	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90016984	90016984	+	IGR	SNP	G	T	T	rs112937552		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	126995740	126995740	+	IGR	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38472784	38472784	+	IGR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	59447249	59447249	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63396373	63396373	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8167718	8167718	+	IGR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88177121	88177121	+	IGR	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19962012	19962012	+	IGR	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53982806	53982806	+	IGR	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56574402	56574403	+	IGR	DNP	AT	TA	TA			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19855484	19855484	+	IGR	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25900584	25900584	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44547077	44547077	+	IGR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	32792024	32792024	+	IGR	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84789874	84789874	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	92824743	92824743	+	IGR	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31173329	31173329	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32178078	32178078	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32374972	32374972	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33395990	33395990	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	15673911	15673911	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20488943	20488943	+	IGR	SNP	C	A	A	rs149875309	by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25410498	25410498	+	IGR	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57864283	57864283	+	IGR	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22497848	22497848	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23040385	23040385	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	52104370	52104370	+	IGR	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903326	148903326	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158165934	158165934	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166246009	166246009	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	196734804	196734804	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238655204	238655204	+	IGR	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	45246235	45246235	+	IGR	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	68841031	68841031	+	IGR	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29449677	29449678	+	IGR	DEL	CC	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29862002	29862002	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181130	11181130	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20617659	20617659	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20618259	20618259	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9865727	9865727	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16340552	16340552	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349576	16349576	+	IGR	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103028133	103028133	+	IGR	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	110490295	110490295	+	IGR	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	189092232	189092232	+	IGR	SNP	G	T	T	rs61732331	by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	27050118	27050118	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	39701090	39701090	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75385416	75385416	+	IGR	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76483861	76483861	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87680223	87680223	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98031595	98031595	+	IGR	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	78033931	78033931	+	IGR	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	81002317	81002317	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	83492895	83492895	+	IGR	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	83492904	83492904	+	IGR	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15450958	15450958	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	31053675	31053675	+	IGR	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84845666	84845666	+	IGR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	37012694	37012694	+	IGR	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	21259763	21259763	+	IGR	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	2515570	2515570	+	IGR	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38694945	38694945	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62916554	62916554	+	IGR	SNP	A	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6976213	6976213	+	IGR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	13562927	13562927	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	53358179	53358179	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	61850451	61850451	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	90426996	90426996	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	114099122	114099122	+	IGR	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44110506	44110506	+	IGR	SNP	T	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134812116	134812116	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	23094463	23094463	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48183695	48183695	+	IGR	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52635593	52635593	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	57704405	57704405	+	IGR	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	62104028	62104028	+	IGR	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL2	57216	broad.mit.edu	37	1	160385936	160385936	+	Silent	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100821810	100821810	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62214246	62214246	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS4B	9525	broad.mit.edu	37	18	61058216	61058216	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6232097	6232097	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70880974	70880974	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85738544	85738544	+	Splice_Site	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR45	11152	broad.mit.edu	37	X	48932786	48932786	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR45	11152	broad.mit.edu	37	X	48932788	48932788	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR5	11091	broad.mit.edu	37	9	137007852	137007852	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	1005335	1005335	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	1009850	1009850	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32437901	32437901	+	Intron	DEL	C	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO1	7514	broad.mit.edu	37	2	61721289	61721289	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO6	23214	broad.mit.edu	37	16	28167672	28167672	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO7	23039	broad.mit.edu	37	8	21833878	21833878	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN2	22803	broad.mit.edu	37	20	21314221	21314221	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YME1L1	10730	broad.mit.edu	37	10	27412450	27412450	+	Intron	SNP	T	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46585482	46585482	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3HC1	51530	broad.mit.edu	37	7	129665849	129665849	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77767112	77767112	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77767611	77767611	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM3	114026	broad.mit.edu	37	19	57646704	57646704	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZKSCAN2	342357	broad.mit.edu	37	16	25255245	25255245	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44802454	44802454	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF148	7707	broad.mit.edu	37	3	125029739	125029739	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF185	7739	broad.mit.edu	37	X	152137913	152137913	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF217	7764	broad.mit.edu	37	20	52198638	52198638	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF275	10838	broad.mit.edu	37	X	152613093	152613093	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF331	55422	broad.mit.edu	37	19	54079846	54079846	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22817242	22817242	+	5'UTR	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF503	84858	broad.mit.edu	37	10	77158903	77158903	+	Silent	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF554	115196	broad.mit.edu	37	19	2827751	2827751	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF613	79898	broad.mit.edu	37	19	52447376	52447376	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF646	9726	broad.mit.edu	37	16	31088711	31088711	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF738	148203	broad.mit.edu	37	19	21558664	21558664	+	Intron	SNP	A	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF79	7633	broad.mit.edu	37	9	130207042	130207042	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF827	152485	broad.mit.edu	37	4	146806772	146806772	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF90	7643	broad.mit.edu	37	19	20211404	20211404	+	Intron	SNP	G	C	C			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22941944	22941944	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP1	22917	broad.mit.edu	37	11	60638403	60638403	+	Intron	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP2	7783	broad.mit.edu	37	16	21210257	21210257	+	Intron	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187694578	187694578	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20362593	20362593	+	5'Flank	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20362918	20362918	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20362921	20362921	+	Intron	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25421930	25421930	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25483112	25483112	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32070542	32070542	+	5'Flank	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33013791	33013791	+	5'Flank	SNP	C	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	8178880	8178880	+	Intron	SNP	G	A	A			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64538996	64538996	+	RNA	SNP	C	G	G			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	22938655	22938655	+	Intron	SNP	C	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43816684	43816684	+	RNA	SNP	G	T	T			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
