Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCC4	10257	broad.mit.edu	37	13	95840797	95840797	+	Splice_Site	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17424163	17424163	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF2	10061	broad.mit.edu	37	7	150912604	150912604	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE2	59272	broad.mit.edu	37	X	15591573	15591573	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACO1	48	broad.mit.edu	37	9	32407428	32407428	+	Splice_Site	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236912455	236912455	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT2	140625	broad.mit.edu	37	1	2938505	2938505	+	Missense_Mutation	SNP	C	A	A	rs140563911	by1000genomes	TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106360444	106360444	+	Splice_Site	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM7	8756	broad.mit.edu	37	8	24304641	24304641	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM8	101	broad.mit.edu	37	10	135084111	135084111	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS13	11093	broad.mit.edu	37	9	136298700	136298700	+	Intron	DEL	C	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18777116	18777116	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84488795	84488795	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84553886	84553886	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB1	104	broad.mit.edu	37	21	46605016	46605016	+	Intron	SNP	G	T	T	rs142203909		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK2	90956	broad.mit.edu	37	7	140386620	140386620	+	Intron	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167787545	167787545	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31127290	31127291	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH7	131	broad.mit.edu	37	4	100341786	100341786	+	Silent	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRM1	11047	broad.mit.edu	37	20	60878866	60878866	+	Intron	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148072760	148072760	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236706382	236706382	+	Intron	SNP	T	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP2	116986	broad.mit.edu	37	12	58125159	58125159	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGRN	375790	broad.mit.edu	37	1	979211	979212	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHI1	54806	broad.mit.edu	37	6	135732737	135732737	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62301093	62301093	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106968952	106968952	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243715973	243715973	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CL	259173	broad.mit.edu	37	3	46717055	46717055	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41577167	41577167	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41580990	41580990	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKDD1A	348094	broad.mit.edu	37	15	65242117	65242117	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD50	57182	broad.mit.edu	37	4	125591732	125591732	+	Silent	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD50	57182	broad.mit.edu	37	4	125599742	125599742	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO10	55129	broad.mit.edu	37	3	43474216	43474216	+	Missense_Mutation	SNP	C	A	A	rs144728237		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO1	55107	broad.mit.edu	37	11	69957775	69957775	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA6	309	broad.mit.edu	37	5	150484921	150484921	+	Intron	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36634041	36634041	+	Intron	DEL	G	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1M1	8907	broad.mit.edu	37	19	16345161	16345161	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APAF1	317	broad.mit.edu	37	12	99061359	99061359	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24966125	24966125	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP33	115703	broad.mit.edu	37	19	36277799	36277799	+	Silent	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF7	8874	broad.mit.edu	37	13	111862127	111862127	+	Intron	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5B	84159	broad.mit.edu	37	10	63850816	63850816	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASL	435	broad.mit.edu	37	7	65557449	65557449	+	Intron	DEL	A	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26411447	26411447	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70092727	70092727	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP3	8938	broad.mit.edu	37	16	1392054	1392054	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARHL2	343472	broad.mit.edu	37	1	91182020	91182020	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11B	64919	broad.mit.edu	37	14	99640499	99640499	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BHLHE41	79365	broad.mit.edu	37	12	26276135	26276135	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP2	650	broad.mit.edu	37	20	6758772	6758773	+	Intron	DNP	GG	TT	TT			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1A	657	broad.mit.edu	37	10	88635753	88635753	+	5'UTR	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSDC1	55108	broad.mit.edu	37	1	32843931	32843931	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf53	282966	broad.mit.edu	37	10	50916364	50916364	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf58	84293	broad.mit.edu	37	10	82187222	82187222	+	Silent	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf90	118611	broad.mit.edu	37	10	128147664	128147664	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf101	54916	broad.mit.edu	37	14	57075769	57075769	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf33	196951	broad.mit.edu	37	15	49800533	49800533	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf57	124989	broad.mit.edu	37	17	45471442	45471442	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf77	26097	broad.mit.edu	37	1	153609129	153609129	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9510422	9510422	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20055038	20055038	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf9	23313	broad.mit.edu	37	22	45598842	45598842	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf28	51374	broad.mit.edu	37	2	27439534	27439534	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf15	89876	broad.mit.edu	37	3	119452372	119452372	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41149252	41149252	+	Intron	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41149695	41149695	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf120	387263	broad.mit.edu	37	6	170102858	170102858	+	Silent	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	54095509	54095509	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf58	352999	broad.mit.edu	37	6	127899809	127899809	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf34	116328	broad.mit.edu	37	8	69728223	69728223	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181763957	181763957	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49070669	49070669	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40015446	40015446	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201028483	201028483	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201046031	201046031	+	Intron	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81598255	81598256	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62388860	62388860	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	121980614	121980614	+	Silent	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC150	284992	broad.mit.edu	37	2	197583345	197583345	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC52	152185	broad.mit.edu	37	3	113172761	113172761	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC74A	90557	broad.mit.edu	37	2	132290517	132290517	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC93	54520	broad.mit.edu	37	2	118716003	118716003	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKAR	886	broad.mit.edu	37	4	26483494	26483494	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKAR	886	broad.mit.edu	37	4	26483502	26483502	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNT2	905	broad.mit.edu	37	2	135711220	135711220	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD101	9398	broad.mit.edu	37	1	117552674	117552674	+	Silent	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7522072	7522072	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158299789	158299789	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD244	51744	broad.mit.edu	37	1	160811258	160811258	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24488134	24488134	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24535845	24535845	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24578483	24578483	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59212266	59212266	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31323550	31323551	+	3'UTR	DNP	CC	AT	AT			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP3	80279	broad.mit.edu	37	17	46056306	46056306	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34852957	34852957	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214816078	214816078	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55897269	55897269	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CETN1	1068	broad.mit.edu	37	18	580817	580817	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB	1082	broad.mit.edu	37	19	49551670	49551670	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50835618	50835618	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD4	1108	broad.mit.edu	37	12	6707377	6707377	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6203992	6203992	+	Splice_Site	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHERP	10523	broad.mit.edu	37	19	16641682	16641682	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN2	1124	broad.mit.edu	37	7	29535591	29535591	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHSY1	22856	broad.mit.edu	37	15	101719238	101719238	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC14A	161198	broad.mit.edu	37	14	38724645	38724645	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4F	165530	broad.mit.edu	37	2	71046533	71046533	+	Silent	SNP	T	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSPN	63967	broad.mit.edu	37	1	36226071	36226071	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150907049	150907049	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	2777840	2777840	+	Intron	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39178104	39178104	+	Intron	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76495885	76495885	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103461467	103461467	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33134818	33134818	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139629072	139629072	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86515893	86515893	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111119357	111119357	+	Intron	DEL	G	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111138029	111138029	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107898751	107898751	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137655451	137655451	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130284251	130284251	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61451246	61451246	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD8	54951	broad.mit.edu	37	4	47455119	47455119	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ3	51805	broad.mit.edu	37	6	99824144	99824144	+	Intron	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47708481	47708481	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPE	1363	broad.mit.edu	37	4	166405846	166405846	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211532908	211532908	+	Splice_Site	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207753826	207753826	+	Intron	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGC	1420	broad.mit.edu	37	2	208994227	208994227	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSAG1	158511	broad.mit.edu	37	X	151908824	151908824	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2808800	2808800	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34067830	34067830	+	Intron	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113304709	113304709	+	Intron	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRP2BP	57325	broad.mit.edu	37	20	18143613	18143613	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST8	10047	broad.mit.edu	37	20	23472256	23472256	+	5'UTR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAG2	30848	broad.mit.edu	37	X	153880825	153880825	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCF	10664	broad.mit.edu	37	16	67662542	67662542	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80782895	80782895	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68040211	68040211	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11565013	11565013	+	Intron	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTRC	11330	broad.mit.edu	37	1	15771101	15771101	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTRC	11330	broad.mit.edu	37	1	15771105	15771105	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSG	1511	broad.mit.edu	37	14	25043078	25043078	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117424408	117424408	+	Silent	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16949760	16949760	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B1	1584	broad.mit.edu	37	8	143955805	143955805	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2S1	29785	broad.mit.edu	37	19	41704914	41704914	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYSLTR2	57105	broad.mit.edu	37	13	49281393	49281393	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57476938	57476938	+	Silent	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59112813	59112813	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L2	340578	broad.mit.edu	37	X	125298594	125298594	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L1	285429	broad.mit.edu	37	4	41984232	41984232	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169374381	169374381	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169158468	169158468	+	Silent	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4C	55667	broad.mit.edu	37	9	19334868	19334868	+	Intron	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DES	1674	broad.mit.edu	37	2	220284872	220284872	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14722128	14722128	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	185882585	185882585	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	329193	329193	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC2	84925	broad.mit.edu	37	3	122545760	122545760	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	108124877	108124877	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84732063	84732063	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79589107	79589107	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMP1	1758	broad.mit.edu	37	4	88584415	88584415	+	Silent	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21813492	21813492	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38858602	38858602	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11687958	11687958	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	334314	334314	+	Silent	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27167645	27167645	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC2	1824	broad.mit.edu	37	18	28648808	28648808	+	Intron	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28923328	28923328	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56417869	56417869	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EAPP	55837	broad.mit.edu	37	14	35002630	35002630	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131675985	131675985	+	Intron	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE2	9718	broad.mit.edu	37	3	184009097	184009097	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44178097	44178097	+	Silent	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38337618	38337619	+	Intron	INS	-	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAM	10117	broad.mit.edu	37	4	71508725	71508725	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120596284	120596284	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	132067981	132067981	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5397198	5397198	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89462341	89462341	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93979434	93979434	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPYC	1833	broad.mit.edu	37	12	91371881	91371881	+	Silent	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5L	115704	broad.mit.edu	37	19	7916660	7916660	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVX1	2128	broad.mit.edu	37	7	27283045	27283045	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F12	2161	broad.mit.edu	37	5	176832946	176832946	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAF1	11124	broad.mit.edu	37	1	50957420	50957420	+	Silent	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM118B	79607	broad.mit.edu	37	11	126131433	126131433	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139380238	139380238	+	5'UTR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169B	283777	broad.mit.edu	37	15	99023777	99023777	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10696433	10696433	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3D	131177	broad.mit.edu	37	3	58639260	58639260	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34962203	34962203	+	Missense_Mutation	SNP	C	T	T	rs112769272		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM58A	92002	broad.mit.edu	37	X	152861341	152861341	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	11991473	11991473	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM70A	55026	broad.mit.edu	37	X	119428017	119428017	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM74A3	728495	broad.mit.edu	37	9	40716329	40716329	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83G	644815	broad.mit.edu	37	17	18881050	18881050	+	Silent	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9A	171482	broad.mit.edu	37	X	8761671	8761671	+	Intron	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP2	9855	broad.mit.edu	37	2	242402908	242402908	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD1	79675	broad.mit.edu	37	2	170401296	170401296	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187540319	187540319	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN1	2192	broad.mit.edu	37	22	45972975	45972975	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN2	2199	broad.mit.edu	37	3	13669357	13669357	+	Silent	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL5	26234	broad.mit.edu	37	4	15614062	15614062	+	Intron	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR3A	2214	broad.mit.edu	37	1	161514427	161514427	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN2	2220	broad.mit.edu	37	9	137778291	137778291	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157665181	157665181	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEM1A	55527	broad.mit.edu	37	19	4793717	4793717	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124985582	124985582	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERD3L	222894	broad.mit.edu	37	7	19184711	19184711	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102454321	102454321	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FH	2271	broad.mit.edu	37	1	241665847	241665847	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIG4	9896	broad.mit.edu	37	6	110059538	110059538	+	Silent	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9	11328	broad.mit.edu	37	7	33014721	33014721	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152277601	152277601	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152285039	152285039	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLI1	2313	broad.mit.edu	37	11	128642774	128642774	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84606237	84606237	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180048747	180048747	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89407165	89407165	+	Intron	DEL	T	-	-	rs72451217		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD6	122786	broad.mit.edu	37	14	52188670	52188670	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44975848	44975848	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39153583	39153583	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD7	8324	broad.mit.edu	37	2	202901037	202901037	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD7	8324	broad.mit.edu	37	2	202901043	202901043	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17446080	17446080	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17472786	17472786	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47033588	47033588	+	5'UTR	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151821409	151821409	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL3ST2	64090	broad.mit.edu	37	2	242741221	242741221	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT2	2590	broad.mit.edu	37	1	230379104	230379104	+	Silent	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALT	2592	broad.mit.edu	37	9	34647906	34647906	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120594834	120594834	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH2	2689	broad.mit.edu	37	17	61958369	61958369	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHRHR	2692	broad.mit.edu	37	7	31014554	31014554	+	Intron	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC2	54810	broad.mit.edu	37	1	78511902	78511902	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA9	81025	broad.mit.edu	37	1	39341324	39341324	+	Silent	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42006218	42006218	+	Missense_Mutation	SNP	C	A	A	rs77498774		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLOD4	51031	broad.mit.edu	37	17	685385	685385	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYAT	10249	broad.mit.edu	37	11	58482797	58482797	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNA14	9630	broad.mit.edu	37	9	80038829	80038829	+	3'UTR	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121448017	121448017	+	Intron	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92560248	92560248	+	Silent	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135455096	135455096	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR137	56834	broad.mit.edu	37	11	64055924	64055924	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR61	83873	broad.mit.edu	37	1	110086058	110086058	+	Silent	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94006168	94006168	+	Silent	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94031995	94031995	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	10031830	10031830	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126173676	126173676	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126883292	126883292	+	5'UTR	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMC	56169	broad.mit.edu	37	8	130774859	130774859	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2E1	2960	broad.mit.edu	37	3	120461422	120461422	+	5'Flank	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSB	2990	broad.mit.edu	37	7	65435274	65435275	+	Frame_Shift_Del	DEL	TG	-	-	rs143084006		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMH	2999	broad.mit.edu	37	14	25078744	25078744	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDX	139324	broad.mit.edu	37	X	83723895	83723895	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236761366	236761366	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P2	400322	broad.mit.edu	37	15	23299984	23299984	+	RNA	SNP	G	A	A	rs429570		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28467330	28467330	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF1A	6927	broad.mit.edu	37	12	121434172	121434172	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRSP12	10247	broad.mit.edu	37	8	99118161	99118161	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST3	266722	broad.mit.edu	37	13	97485160	97485160	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA14	51182	broad.mit.edu	37	10	14913621	14913621	+	3'UTR	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1B	3351	broad.mit.edu	37	6	78172323	78172323	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP3	3486	broad.mit.edu	37	7	45956754	45956754	+	Intron	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F9	56300	broad.mit.edu	37	2	113742497	113742497	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21	59067	broad.mit.edu	37	4	123542067	123542067	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76744341	76744341	+	Silent	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41729415	41729415	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80	54617	broad.mit.edu	37	15	41364283	41364283	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO11	51194	broad.mit.edu	37	5	61781303	61781303	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITFG1	81533	broad.mit.edu	37	16	47485263	47485263	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182363443	182363443	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102250508	102250508	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4711438	4711438	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19498290	19498290	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	20734431	20734431	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK12	56660	broad.mit.edu	37	2	47748864	47748864	+	Silent	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62076626	62076626	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	7046895	7046895	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0355	9710	broad.mit.edu	37	19	34811000	34811000	+	Silent	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0415	9907	broad.mit.edu	37	7	4825961	4825961	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123170560	123170560	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123239556	123239556	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94156389	94156389	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL1	3802	broad.mit.edu	37	19	55286984	55286984	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55331428	55331428	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55331438	55331438	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL28	54813	broad.mit.edu	37	14	45403187	45403187	+	Intron	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL6	89857	broad.mit.edu	37	3	183211747	183211747	+	Intron	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL6	89857	broad.mit.edu	37	3	183226293	183226293	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRC1	3821	broad.mit.edu	37	12	10601765	10601765	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38955177	38955177	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT71	112802	broad.mit.edu	37	12	52943961	52943961	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT85	3891	broad.mit.edu	37	12	52756581	52756581	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL4	91133	broad.mit.edu	37	18	6237960	6237960	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LACRT	90070	broad.mit.edu	37	12	55025937	55025937	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129475688	129475688	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107708479	107708479	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCLAT1	253558	broad.mit.edu	37	2	30682489	30682489	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC153328	153328	broad.mit.edu	37	5	135177952	135177952	+	Intron	SNP	T	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646813	646813	broad.mit.edu	37	11	50379387	50379387	+	RNA	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOXL1	4016	broad.mit.edu	37	15	74219594	74219594	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82456636	82456636	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPO	4025	broad.mit.edu	37	17	56324947	56324947	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99771695	99771695	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRAT	9227	broad.mit.edu	37	4	155670427	155670427	+	3'UTR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133884067	133884067	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141298684	141298684	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC3B	116135	broad.mit.edu	37	3	26751822	26751822	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70486899	70486899	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115805271	115805271	+	Silent	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33477737	33477737	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160766226	160766226	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYAR	55646	broad.mit.edu	37	4	4285410	4285410	+	Silent	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39549929	39549929	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	15412194	15412194	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	15967720	15967720	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB6	158809	broad.mit.edu	37	X	26212382	26212382	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC2	51438	broad.mit.edu	37	X	141291699	141291699	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED2	10916	broad.mit.edu	37	X	54840890	54840890	+	Intron	SNP	G	T	T	rs150465263	by1000genomes	TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAK	4117	broad.mit.edu	37	6	10808944	10808944	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML3	55534	broad.mit.edu	37	4	140640518	140640518	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A2	4122	broad.mit.edu	37	15	91450651	91450651	+	Silent	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH11	441061	broad.mit.edu	37	5	16067903	16067903	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165110151	165110151	+	Intron	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186978605	186978605	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST1	22983	broad.mit.edu	37	19	12979561	12979561	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD6	114785	broad.mit.edu	37	12	57919593	57919593	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC5R	4161	broad.mit.edu	37	18	13825905	13825905	+	Silent	SNP	T	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM2	4171	broad.mit.edu	37	3	127323593	127323593	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCPH1	79648	broad.mit.edu	37	8	6312589	6312589	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151085856	151085856	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141778534	141778534	+	Intron	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18389289	18389289	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR496	574454	broad.mit.edu	37	14	101526283	101526283	+	5'Flank	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR518C	574477	broad.mit.edu	37	19	54210898	54210898	+	5'Flank	DEL	T	-	-	rs112037096		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MITF	4286	broad.mit.edu	37	3	70014210	70014210	+	Silent	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151945325	151945325	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT10	8028	broad.mit.edu	37	10	21962366	21962366	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118374343	118374343	+	Missense_Mutation	SNP	A	G	G	rs147223140		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP14	4323	broad.mit.edu	37	14	23312766	23312766	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNX1	3110	broad.mit.edu	37	7	156802971	156802971	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS3	27304	broad.mit.edu	37	20	49575103	49575103	+	5'Flank	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132637011	132637011	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRE11A	4361	broad.mit.edu	37	11	94219247	94219247	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47641404	47641404	+	Intron	SNP	T	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121534985	121534985	+	Intron	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR4	9110	broad.mit.edu	37	17	56584622	56584622	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30630609	30630609	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8982132	8982132	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9077714	9077715	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1103270	1103270	+	Missense_Mutation	SNP	G	T	T	rs72655355		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113459690	113459690	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113562896	113562896	+	Silent	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10258026	10258026	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10411814	10411814	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10432387	10432387	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1G	64005	broad.mit.edu	37	7	45016329	45016329	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26414287	26414287	+	Intron	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12656293	12656293	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOC	4653	broad.mit.edu	37	1	171607754	171607754	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1891332	1891332	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1	4661	broad.mit.edu	37	20	62850201	62850201	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT1	9	broad.mit.edu	37	8	18079764	18079764	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78513538	78513538	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134080260	134080260	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCSTN	23385	broad.mit.edu	37	1	160325562	160325562	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70451114	70451114	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29665721	29665721	+	Splice_Site	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204985582	204985582	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL4	348938	broad.mit.edu	37	5	156899961	156899961	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP9	338321	broad.mit.edu	37	19	56235292	56235292	+	Intron	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL4	8715	broad.mit.edu	37	18	31709869	31709869	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26109133	26109133	+	Splice_Site	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS3	4846	broad.mit.edu	37	7	150698616	150698617	+	Intron	INS	-	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPFFR2	10886	broad.mit.edu	37	4	73013539	73013539	+	3'UTR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34889212	34889213	+	Missense_Mutation	DNP	GG	TT	TT	rs77260034	byFrequency	TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY1R	4886	broad.mit.edu	37	4	164246588	164246588	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY1R	4886	broad.mit.edu	37	4	164247685	164247685	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206608158	206608158	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50779704	50779705	+	Intron	DEL	AT	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN2	54888	broad.mit.edu	37	5	6623302	6623302	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD1	84955	broad.mit.edu	37	8	110305452	110305452	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUPL2	11097	broad.mit.edu	37	7	23239964	23239964	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF2B	728343	broad.mit.edu	37	X	101572264	101572264	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OC90	729330	broad.mit.edu	37	8	133036951	133036951	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123695766	123695766	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123805544	123805544	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50959886	50959886	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM3	118427	broad.mit.edu	37	1	102290750	102290750	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPA1	4976	broad.mit.edu	37	3	193376632	193376632	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H12	440153	broad.mit.edu	37	14	19378025	19378025	+	Silent	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14C36	127066	broad.mit.edu	37	1	248512312	248512312	+	Nonsense_Mutation	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1F1	4992	broad.mit.edu	37	16	3254471	3254471	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A12	346525	broad.mit.edu	37	7	143793022	143793022	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A25	392138	broad.mit.edu	37	7	143771411	143771412	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G2	81470	broad.mit.edu	37	1	247751824	247751824	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2H1	26716	broad.mit.edu	37	6	29429977	29429977	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2H2	7932	broad.mit.edu	37	6	29555748	29555748	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2H2	7932	broad.mit.edu	37	6	29556131	29556131	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T8	343172	broad.mit.edu	37	1	248084469	248084469	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T8	343172	broad.mit.edu	37	1	248084472	248084472	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2Y1	134083	broad.mit.edu	37	5	180166828	180166828	+	Silent	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55135670	55135670	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K1	79544	broad.mit.edu	37	14	20404246	20404246	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M1	441670	broad.mit.edu	37	14	20249073	20249073	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G1	79324	broad.mit.edu	37	11	4945669	4945669	+	5'Flank	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52A5	390054	broad.mit.edu	37	11	5153348	5153348	+	Silent	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N4	390072	broad.mit.edu	37	11	5776362	5776362	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563167	55563167	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D18	219438	broad.mit.edu	37	11	55587405	55587405	+	Silent	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5R1	219479	broad.mit.edu	37	11	56184894	56184894	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5R1	219479	broad.mit.edu	37	11	56185351	56185351	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T2	219464	broad.mit.edu	37	11	55999689	55999689	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T3	390154	broad.mit.edu	37	11	56019785	56019785	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7E5P	219445	broad.mit.edu	37	11	55747319	55747320	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D2	283160	broad.mit.edu	37	11	124189170	124189170	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC2L	4999	broad.mit.edu	37	2	201785791	201785791	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSR2	116039	broad.mit.edu	37	8	99961618	99961618	+	Silent	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21689935	21689935	+	Intron	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26781333	26781333	+	Intron	SNP	C	A	A	rs144623968	by1000genomes	TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC5	140886	broad.mit.edu	37	X	90690776	90690776	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176525751	176525751	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASK	23178	broad.mit.edu	37	2	242066664	242066664	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX3	5090	broad.mit.edu	37	9	128697757	128697757	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP2	5094	broad.mit.edu	37	12	53849893	53849893	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55568998	55568998	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140263288	140263288	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA4	56144	broad.mit.edu	37	5	140188799	140188799	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140215087	140215087	+	Missense_Mutation	SNP	C	A	A	rs139807581		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140573085	140573085	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140589702	140589702	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB16	57717	broad.mit.edu	37	5	140564381	140564381	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140719979	140719979	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47801775	47801775	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66829340	66829340	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144857684	144857684	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE5A	8654	broad.mit.edu	37	4	120527806	120527806	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA4	9601	broad.mit.edu	37	7	148702534	148702534	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDLIM1	9124	broad.mit.edu	37	10	97023607	97023607	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41831704	41831704	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX16	9409	broad.mit.edu	37	11	45939056	45939056	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK2	5232	broad.mit.edu	37	6	49754648	49754648	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK2	5232	broad.mit.edu	37	6	49754901	49754901	+	5'UTR	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGK	10026	broad.mit.edu	37	1	77672265	77672265	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNM2	57605	broad.mit.edu	37	12	123489893	123489893	+	Silent	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1	5310	broad.mit.edu	37	16	2161931	2161931	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51889434	51889434	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	32975478	32975478	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	32975519	32975519	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8717677	8717677	+	Silent	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81929382	81929382	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18848012	18848012	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242253259	242253259	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG6	55200	broad.mit.edu	37	12	6426509	6426509	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHO1	51177	broad.mit.edu	37	1	150123252	150123252	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161134171	161134171	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLS1	5357	broad.mit.edu	37	3	142430566	142430566	+	Intron	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131833263	131833264	+	Intron	DNP	GT	AG	AG			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72162918	72162919	+	Intron	DNP	CC	AA	AA			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP1	5407	broad.mit.edu	37	10	118368529	118368529	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24722502	24722502	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121206379	121206379	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2E	5434	broad.mit.edu	37	19	1089824	1089824	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14542797	14542797	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA1	8500	broad.mit.edu	37	11	70172854	70172854	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3A	5506	broad.mit.edu	37	7	113518674	113518674	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPRC1	23082	broad.mit.edu	37	10	103904696	103904696	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23521388	23521388	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREP	5550	broad.mit.edu	37	6	105726117	105726117	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48719903	48719903	+	Intron	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53564427	53564427	+	Silent	SNP	C	A	A	rs142166726	byFrequency	TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF18	8559	broad.mit.edu	37	10	13652108	13652108	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR4	11272	broad.mit.edu	37	12	10999703	10999703	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS12	8492	broad.mit.edu	37	4	119203272	119203273	+	Frame_Shift_Ins	INS	-	TGTG	TGTG			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142458347	142458347	+	Intron	DEL	G	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE	58497	broad.mit.edu	37	1	151006549	151006549	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD2	84249	broad.mit.edu	37	5	139218115	139218115	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43690437	43690437	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2	5747	broad.mit.edu	37	8	141900637	141900637	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN5	84867	broad.mit.edu	37	11	18751016	18751016	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198677355	198677355	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8521456	8521456	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157370936	157370936	+	Intron	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157414361	157414361	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121652109	121652109	+	Silent	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121653456	121653456	+	Silent	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121676698	121676698	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTX4	390667	broad.mit.edu	37	16	1537612	1537612	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGM	5837	broad.mit.edu	37	11	64521687	64521687	+	Intron	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9322124	9322124	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QKI	9444	broad.mit.edu	37	6	163836392	163836392	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173679007	173679007	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH8	50700	broad.mit.edu	37	19	10124143	10124143	+	5'UTR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79347939	79347939	+	Intron	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79312396	79312396	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117248319	117248319	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49604607	49604607	+	5'Flank	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICTOR	253260	broad.mit.edu	37	5	39002501	39002504	+	Intron	DEL	TGTA	-	-	rs1239251	byFrequency	TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF144B	255488	broad.mit.edu	37	6	18457534	18457534	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77147386	77147386	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77607136	77607136	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORB	6096	broad.mit.edu	37	9	77300511	77300511	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10470620	10470620	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55542602	55542602	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL10L	140801	broad.mit.edu	37	14	47120666	47120666	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS11	6205	broad.mit.edu	37	19	49999751	49999752	+	Intron	INS	-	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSL1D1	26156	broad.mit.edu	37	16	11933938	11933938	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPRY1	89970	broad.mit.edu	37	16	57255297	57255297	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200298174	200298174	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38949397	38949397	+	Intron	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38651363	38651363	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP6	26054	broad.mit.edu	37	6	76425093	76425093	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT9	10801	broad.mit.edu	37	17	75303140	75303140	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERAC1	84947	broad.mit.edu	37	6	158541400	158541400	+	Intron	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB12	89777	broad.mit.edu	37	18	61228315	61228315	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61569034	61569035	+	Missense_Mutation	DNP	TG	AA	AA			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD1A	9739	broad.mit.edu	37	16	30972899	30972899	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BGR	6450	broad.mit.edu	37	21	40871811	40871811	+	Silent	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP5L	80851	broad.mit.edu	37	1	249106302	249106302	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHD	56961	broad.mit.edu	37	19	4290668	4290668	+	3'UTR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHE	126669	broad.mit.edu	37	1	154458886	154458886	+	Intron	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC8	27181	broad.mit.edu	37	19	51961365	51961365	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF8	56833	broad.mit.edu	37	1	159802604	159802604	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC11A2	4891	broad.mit.edu	37	12	51399200	51399200	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44675108	44675108	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122821070	122821070	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A10	65012	broad.mit.edu	37	12	58018712	58018712	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A6	25800	broad.mit.edu	37	18	33702072	33702072	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A9	11136	broad.mit.edu	37	19	33334900	33334900	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A2	6549	broad.mit.edu	37	2	103324831	103324831	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143513923	143513923	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20864473	20864473	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20890308	20890308	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20487873	20487873	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168176669	168176669	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84454067	84454067	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK4	139065	broad.mit.edu	37	X	142718256	142718256	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2104102	2104102	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2775813	2775813	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAPC4	6621	broad.mit.edu	37	9	139286582	139286582	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB1	6641	broad.mit.edu	37	8	121649384	121649384	+	Intron	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB2	6645	broad.mit.edu	37	16	69304105	69304105	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX25	83891	broad.mit.edu	37	4	186168395	186168395	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108427547	108427547	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPACA1	81833	broad.mit.edu	37	6	88773893	88773893	+	Silent	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214727154	214727154	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA21	374955	broad.mit.edu	37	1	16736440	16736440	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA6	54558	broad.mit.edu	37	1	48902501	48902501	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35753908	35753908	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINT1	6692	broad.mit.edu	37	15	41149044	41149044	+	Silent	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK1	6695	broad.mit.edu	37	5	136314510	136314510	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2E	6704	broad.mit.edu	37	1	153065950	153065950	+	3'UTR	SNP	T	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158589026	158589026	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158615143	158615143	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPX2	27286	broad.mit.edu	37	X	99924327	99924327	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP1	6742	broad.mit.edu	37	7	141443635	141443635	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH2	85464	broad.mit.edu	37	17	28003936	28003936	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA2	8128	broad.mit.edu	37	15	92988094	92988094	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52553399	52553399	+	Silent	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC	6769	broad.mit.edu	37	3	36527655	36527655	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK35	140901	broad.mit.edu	37	20	2097421	2097421	+	Silent	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOM	2040	broad.mit.edu	37	9	124115628	124115628	+	Intron	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149882372	149882372	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ2	8871	broad.mit.edu	37	6	158492670	158492670	+	Silent	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT9	143425	broad.mit.edu	37	11	7334985	7334985	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1C	9013	broad.mit.edu	37	16	84217022	84217022	+	Silent	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D2	55357	broad.mit.edu	37	9	100983075	100983075	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TESK2	10420	broad.mit.edu	37	1	45810546	45810546	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFIP11	24144	broad.mit.edu	37	22	26905973	26905973	+	Intron	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92163595	92163595	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177210	89177210	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43560260	43560260	+	5'Flank	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2411389	2411389	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM7	116179	broad.mit.edu	37	15	43568860	43568860	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11581224	11581224	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLX1NB	100038246	broad.mit.edu	37	10	102849705	102849705	+	5'UTR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132A	54972	broad.mit.edu	37	11	60699188	60699188	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM26	219623	broad.mit.edu	37	10	63170408	63170408	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMF1	7110	broad.mit.edu	37	3	69079029	69079029	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19647666	19647666	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29659837	29659837	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMX1	81542	broad.mit.edu	37	14	51706885	51706885	+	5'Flank	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32029540	32029540	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578224	7578224	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPI1	7167	broad.mit.edu	37	12	6979503	6979504	+	Missense_Mutation	DNP	TC	AA	AA			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10942857	10942857	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF4	9618	broad.mit.edu	37	17	27074993	27074993	+	Intron	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM24	8805	broad.mit.edu	37	7	138200011	138200011	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM72	493829	broad.mit.edu	37	16	31230609	31230609	+	Splice_Site	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM8	81603	broad.mit.edu	37	10	104414406	104414406	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111195540	111195540	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142612746	142612746	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81609541	81609541	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43251506	43251506	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC12	54970	broad.mit.edu	37	11	113234572	113234572	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179438859	179438859	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179586535	179586535	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH2	94015	broad.mit.edu	37	17	72233552	72233552	+	Silent	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37903097	37903097	+	Intron	DEL	T	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	157018264	157018264	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69886167	69886167	+	5'Flank	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20347987	20347987	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210658365	210658365	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216144087	216144087	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP33	23032	broad.mit.edu	37	1	78167087	78167087	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	8999107	8999107	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP15	84135	broad.mit.edu	37	5	72875739	72875739	+	Silent	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	60897084	60897084	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4744306	4744306	+	IGR	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55071525	55071525	+	IGR	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59480336	59480336	+	IGR	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38597316	38597316	+	IGR	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53114883	53114883	+	IGR	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8167718	8167718	+	IGR	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	77559314	77559314	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19411670	19411670	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806835	19806836	+	IGR	INS	-	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137559	20137559	+	IGR	SNP	C	A	A	rs139526028	by1000genomes	TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52755647	52755647	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99439400	99439400	+	IGR	SNP	C	A	A	rs150777515	by1000genomes	TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78191547	78191547	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84782570	84782570	+	IGR	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32374994	32374994	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32471671	32471671	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32490119	32490119	+	IGR	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33380059	33380059	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33740934	33740934	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	18364998	18364998	+	IGR	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	47501848	47501848	+	IGR	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26232290	26232290	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15694297	15694297	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15694471	15694471	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22790626	22790626	+	IGR	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43173254	43173254	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53294810	53294810	+	IGR	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146522858	146522858	+	IGR	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149092258	149092258	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	167131885	167131885	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247394808	247394808	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248286173	248286173	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10315286	10315286	+	IGR	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10367969	10367969	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	21562829	21562829	+	IGR	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9907170	9907170	+	IGR	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130747942	130747942	+	IGR	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130751596	130751596	+	IGR	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	158067474	158067474	+	IGR	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	229217289	229217290	+	IGR	INS	-	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83084456	83084456	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83446166	83446167	+	IGR	DNP	GG	TT	TT			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	107047865	107047865	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	73697780	73697780	+	IGR	SNP	A	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80006706	80006706	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82856735	82856735	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96068533	96068533	+	IGR	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96069609	96069609	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96496356	96496356	+	IGR	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97916840	97916840	+	IGR	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117017226	117017226	+	IGR	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	16363328	16363329	+	IGR	DNP	GG	AT	AT			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	181300344	181300344	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70274826	70274826	+	IGR	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	10664919	10664919	+	IGR	SNP	T	A	A	rs112348380		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110285528	110285528	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180166104	180166104	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25909792	25909792	+	IGR	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25909970	25909970	+	IGR	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	26740809	26740809	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	77081369	77081369	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29068873	29068873	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	56297183	56297183	+	IGR	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57841999	57841999	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	5788929	5788929	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124985003	124985003	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48886914	48886914	+	IGR	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56636428	56636428	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57075539	57075539	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63466113	63466113	+	IGR	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63924356	63924356	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65970233	65970233	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88195081	88195081	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	29490029	29490029	+	IGR	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50653538	50653538	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	90426900	90426900	+	IGR	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29826495	29826495	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30689389	30689389	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30689398	30689398	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357621	68357621	+	IGR	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	74723075	74723075	+	IGR	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7477621	7477621	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134808321	134808321	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139479804	139479804	+	IGR	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL2	57216	broad.mit.edu	37	1	160385911	160385911	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3A	146177	broad.mit.edu	37	16	22155616	22155616	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WARS2	10352	broad.mit.edu	37	1	119575563	119575563	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70800554	70800554	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR47	22911	broad.mit.edu	37	1	109525200	109525200	+	Intron	DEL	A	-	-			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR47	22911	broad.mit.edu	37	1	109525251	109525251	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167250700	167250700	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFIKKN2	124857	broad.mit.edu	37	17	48917698	48917698	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP3	8838	broad.mit.edu	37	6	112385912	112385912	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WLS	79971	broad.mit.edu	37	1	68649100	68649100	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168107435	168107435	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17202811	17202811	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB44	29068	broad.mit.edu	37	11	130131510	130131510	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB9	221504	broad.mit.edu	37	6	33423557	33423557	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC19	131540	broad.mit.edu	37	3	195935336	195935336	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP3	124961	broad.mit.edu	37	17	4995008	4995008	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP91	80829	broad.mit.edu	37	11	58384671	58384671	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147108804	147108804	+	Silent	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF248	57209	broad.mit.edu	37	10	38145231	38145231	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF281	23528	broad.mit.edu	37	1	200376396	200376396	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF287	57336	broad.mit.edu	37	17	16470621	16470621	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF317	57693	broad.mit.edu	37	19	9271087	9271087	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF317	57693	broad.mit.edu	37	19	9271256	9271256	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF419	79744	broad.mit.edu	37	19	58002838	58002838	+	Splice_Site	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF490	57474	broad.mit.edu	37	19	12692409	12692409	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF518B	85460	broad.mit.edu	37	4	10447452	10447452	+	Silent	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF644	84146	broad.mit.edu	37	1	91405405	91405405	+	Silent	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF695	57116	broad.mit.edu	37	1	247162722	247162722	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF711	7552	broad.mit.edu	37	X	84520224	84520224	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57528508	57528508	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF746	155061	broad.mit.edu	37	7	149172601	149172601	+	Intron	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF76	7629	broad.mit.edu	37	6	35260577	35260577	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF777	27153	broad.mit.edu	37	7	149129475	149129475	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF813	126017	broad.mit.edu	37	19	53983091	53983091	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF98	148198	broad.mit.edu	37	19	22605024	22605024	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22987329	22987329	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28733781	28733781	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20488815	20488815	+	RNA	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25494472	25494472	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25496006	25496006	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	34239870	34239870	+	5'Flank	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23159763	23159763	+	RNA	SNP	G	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143210010	143210010	+	Intron	SNP	T	C	C			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89326615	89326615	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89476207	89476207	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89976378	89976378	+	Intron	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180539012	180539012	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12794321	12794321	+	Intron	SNP	A	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142028637	142028637	+	Intron	SNP	C	G	G			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142045568	142045568	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	57390712	57390712	+	Intron	SNP	G	T	T			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
