Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1BG	1	broad.mit.edu	37	19	58863972	58863972	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7568325	7568325	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AAAS	8086	broad.mit.edu	37	12	53715373	53715373	+	5'UTR	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AACS	65985	broad.mit.edu	37	12	125571021	125571021	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87041230	87041230	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20793041	20793041	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG8	64241	broad.mit.edu	37	2	44078951	44078951	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM2	84448	broad.mit.edu	37	4	8082493	8082493	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35766395	35766395	+	5'UTR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACO1	48	broad.mit.edu	37	9	32424649	32424649	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX1	51	broad.mit.edu	37	17	73953426	73953426	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA1	58	broad.mit.edu	37	1	229568663	229568663	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR3B	57180	broad.mit.edu	37	7	152549293	152549293	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR1	90	broad.mit.edu	37	2	158655925	158655925	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM10	102	broad.mit.edu	37	15	58974559	58974559	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM15	8751	broad.mit.edu	37	1	155030752	155030752	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM33	80332	broad.mit.edu	37	20	3655206	3655206	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107057654	107057654	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107218737	107218737	+	RNA	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43858522	43858522	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28307118	28307118	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64527523	64527523	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64547236	64547236	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL2	9719	broad.mit.edu	37	9	136403362	136403362	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL2	9719	broad.mit.edu	37	9	136405802	136405802	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL4	54507	broad.mit.edu	37	1	150528080	150528080	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL4	54507	broad.mit.edu	37	1	150529802	150529802	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADA	100	broad.mit.edu	37	20	43248977	43248977	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45701615	45701615	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY3	109	broad.mit.edu	37	2	25057633	25057633	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA2C	152	broad.mit.edu	37	4	3769638	3769638	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL2	79841	broad.mit.edu	37	11	47712103	47712103	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHDC1	27245	broad.mit.edu	37	1	27877205	27877205	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHR	196	broad.mit.edu	37	7	17374516	17374516	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSP	51327	broad.mit.edu	37	16	31540022	31540022	+	3'UTR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AJAP1	55966	broad.mit.edu	37	1	4829965	4829965	+	Silent	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALAS2	212	broad.mit.edu	37	X	55051146	55051146	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH3	221120	broad.mit.edu	37	11	43918971	43918971	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38501086	38501086	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114277762	114277762	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95501983	95501983	+	Intron	DEL	G	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD27	84079	broad.mit.edu	37	19	33134327	33134327	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD27	84079	broad.mit.edu	37	19	33134592	33134592	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD28	23243	broad.mit.edu	37	3	15754943	15754943	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD2	26287	broad.mit.edu	37	10	99338179	99338179	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO7	50636	broad.mit.edu	37	2	242135417	242135417	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32C	23520	broad.mit.edu	37	4	165118290	165118290	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA13	312	broad.mit.edu	37	8	124696964	124696965	+	Splice_Site	DNP	TG	CT	CT			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83333195	83333195	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA1	320	broad.mit.edu	37	9	72071390	72071390	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA2	321	broad.mit.edu	37	15	29346220	29346220	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21230280	21230280	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21233969	21233969	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21251356	21251356	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APP	351	broad.mit.edu	37	21	27254054	27254054	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115346636	115346637	+	Intron	DEL	TC	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARF5	381	broad.mit.edu	37	7	127229110	127229110	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24981854	24981854	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP29	9411	broad.mit.edu	37	1	94650362	94650362	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130215841	130215841	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130217093	130217093	+	Intron	SNP	T	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130220675	130220675	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC8	25852	broad.mit.edu	37	3	137960639	137960639	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35781039	35781039	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35835223	35835223	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC1	51008	broad.mit.edu	37	10	73949704	73949704	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTL	431705	broad.mit.edu	37	2	96789930	96789930	+	Nonsense_Mutation	SNP	C	A	A	rs147267731	byFrequency	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119858355	119858355	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG9B	285973	broad.mit.edu	37	7	150720740	150720740	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113536077	113536077	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160105599	160105599	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42474126	42474126	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160137163	160137163	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203669926	203669926	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1A	523	broad.mit.edu	37	3	113508566	113508566	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B3	148229	broad.mit.edu	37	19	1801891	1801891	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9A	10079	broad.mit.edu	37	20	50217734	50217734	+	3'UTR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPBD4	89978	broad.mit.edu	37	15	35703130	35703130	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRN	8455	broad.mit.edu	37	20	3584857	3584857	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXL	558	broad.mit.edu	37	19	41727213	41727213	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GAT2	135152	broad.mit.edu	37	6	71603759	71603759	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT1	2583	broad.mit.edu	37	12	58024791	58024791	+	Silent	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11098762	11098762	+	5'UTR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BASP1	10409	broad.mit.edu	37	5	17276110	17276110	+	3'UTR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160182489	160182489	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBX	56987	broad.mit.edu	37	3	107524268	107524268	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136596819	136596819	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND2	139105	broad.mit.edu	37	X	18238809	18238810	+	Intron	DNP	CC	AA	AA			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST3	144453	broad.mit.edu	37	12	70049458	70049458	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST3	144453	broad.mit.edu	37	12	70070561	70070561	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP10	27302	broad.mit.edu	37	2	69093072	69093072	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP6	654	broad.mit.edu	37	6	7845350	7845350	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP7	655	broad.mit.edu	37	20	55803293	55803293	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43292796	43292796	+	Intron	SNP	G	C	C	rs147764571	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112991178	112991178	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36937164	36937165	+	Intron	DNP	GC	TG	TG			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD2	6046	broad.mit.edu	37	6	32943245	32943245	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK2	9024	broad.mit.edu	37	11	1478277	1478277	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BST1	683	broad.mit.edu	37	4	15724522	15724522	+	Silent	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf72	196740	broad.mit.edu	37	10	50255081	50255081	+	Missense_Mutation	SNP	C	A	A	rs149594660	byFrequency	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105902094	105902094	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112646278	112646278	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf77	196415	broad.mit.edu	37	12	25148752	25148752	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	81289078	81289078	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf43	145645	broad.mit.edu	37	15	45253761	45253761	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100332754	100332754	+	RNA	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf47	284083	broad.mit.edu	37	17	56620524	56620524	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf59	54785	broad.mit.edu	37	17	8092736	8092736	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30950088	30950088	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179339107	179339107	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179347807	179347807	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf198	84886	broad.mit.edu	37	1	230979457	230979457	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf49	84066	broad.mit.edu	37	1	178489853	178489853	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf20	55257	broad.mit.edu	37	20	61431163	61431163	+	3'UTR	SNP	A	T	T	rs116883192	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf85	128602	broad.mit.edu	37	20	56728599	56728599	+	Splice_Site	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	45941951	45941951	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf34	388815	broad.mit.edu	37	21	17443549	17443549	+	RNA	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf30	253143	broad.mit.edu	37	22	32100842	32100842	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf65	130951	broad.mit.edu	37	2	74855388	74855388	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf85	285093	broad.mit.edu	37	2	242814381	242814382	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf88	84281	broad.mit.edu	37	2	191064420	191064420	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf20	84077	broad.mit.edu	37	3	14763190	14763190	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf44	345222	broad.mit.edu	37	4	3255175	3255175	+	Missense_Mutation	SNP	G	T	T	rs138360402		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37187517	37187517	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf10	10665	broad.mit.edu	37	6	32322972	32322972	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165715241	165715241	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf154	221424	broad.mit.edu	37	6	43476063	43476063	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf167	253714	broad.mit.edu	37	6	97609801	97609801	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf170	221322	broad.mit.edu	37	6	121642831	121642831	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120629670	120629670	+	Translation_Start_Site	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120782254	120782254	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf79	286234	broad.mit.edu	37	9	90501444	90501444	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf79	286234	broad.mit.edu	37	9	90501555	90501555	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACHD1	57685	broad.mit.edu	37	1	65098382	65098382	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140850264	140850264	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49065117	49065117	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1248521	1248521	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62751616	62751616	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALN1	83698	broad.mit.edu	37	7	71275311	71275311	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1G	57172	broad.mit.edu	37	1	209781345	209781345	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN2	65981	broad.mit.edu	37	12	30888281	30888281	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASK	8573	broad.mit.edu	37	X	41646364	41646364	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ2	845	broad.mit.edu	37	1	116243740	116243740	+	3'UTR	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ2	845	broad.mit.edu	37	1	116260444	116260444	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBX4	8535	broad.mit.edu	37	17	77807939	77807939	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1B	200014	broad.mit.edu	37	1	52819274	52819274	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106118383	106118383	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106207444	106207444	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC28A	25901	broad.mit.edu	37	6	139101213	139101213	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR3	1232	broad.mit.edu	37	3	46307361	46307361	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT7	10574	broad.mit.edu	37	2	73461436	73461436	+	5'UTR	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD19	930	broad.mit.edu	37	16	28943320	28943320	+	5'UTR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300C	10871	broad.mit.edu	37	17	72537610	72537610	+	3'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD38	952	broad.mit.edu	37	4	15850294	15850294	+	3'UTR	SNP	A	T	T	rs80225519		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157805829	157805829	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD97	976	broad.mit.edu	37	19	14508147	14508147	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC40	51362	broad.mit.edu	37	6	110551182	110551182	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24487843	24487843	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24509706	24509706	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883958	21883958	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH19	28513	broad.mit.edu	37	18	64212068	64212068	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31299470	31299470	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176002154	176002154	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK9	1025	broad.mit.edu	37	9	130550579	130550579	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2A	63036	broad.mit.edu	37	1	15789207	15789207	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA3B	23436	broad.mit.edu	37	1	22307458	22307458	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF1	10658	broad.mit.edu	37	11	47506016	47506016	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48688324	48688324	+	Splice_Site	DEL	C	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48696237	48696237	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48697761	48697761	+	Silent	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196642292	196642292	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196695583	196695583	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGN	57530	broad.mit.edu	37	1	151509828	151509828	+	3'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	440756	440756	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN2	1124	broad.mit.edu	37	7	29440519	29440519	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRDL1	91851	broad.mit.edu	37	X	109919543	109919543	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136622967	136622967	+	Intron	SNP	C	A	A	rs112485957		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRND	1144	broad.mit.edu	37	2	233391331	233391331	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46772905	46772905	+	Silent	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143036384	143036384	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN1	9076	broad.mit.edu	37	3	190026244	190026244	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN8	9073	broad.mit.edu	37	21	31588044	31588044	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTCL1	8218	broad.mit.edu	37	22	19230452	19230452	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTC	1213	broad.mit.edu	37	17	57728798	57728798	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88296903	88296903	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87673918	87673918	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74414933	74414933	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32151634	32151634	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70878090	70878091	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70890522	70890522	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	56021688	56021688	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139890183	139890183	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86453388	86453388	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86590978	86590978	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189863350	189863350	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107936239	107936239	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137676916	137676916	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10114441	10114441	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A1	1291	broad.mit.edu	37	21	47409475	47409475	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48612109	48612109	+	Splice_Site	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48613764	48613764	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61458578	61458578	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLQ	8292	broad.mit.edu	37	3	15531040	15531040	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG2	26958	broad.mit.edu	37	7	130295897	130295897	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47605309	47605309	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207885807	207885807	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRAT	1384	broad.mit.edu	37	9	131864126	131864126	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB2	286204	broad.mit.edu	37	9	126137497	126137497	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTC2	200186	broad.mit.edu	37	1	153920685	153920685	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37333941	37333941	+	Missense_Mutation	SNP	G	A	A	rs138676111		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113323375	113323375	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113326309	113326309	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113420532	113420532	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113599512	113599512	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113694949	113694949	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1D	1453	broad.mit.edu	37	17	80213371	80213371	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRP2BP	57325	broad.mit.edu	37	20	18162538	18162538	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11346577	11346577	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117407198	117407198	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16982167	16982167	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL12	6387	broad.mit.edu	37	10	44873734	44873734	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36156446	36156446	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC1	1538	broad.mit.edu	37	X	83129059	83129059	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27C1	339761	broad.mit.edu	37	2	127944669	127944669	+	3'UTR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41387975	41387975	+	Silent	SNP	G	T	T	rs150838585	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41533417	41533417	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTSB	92521	broad.mit.edu	37	17	20000015	20000015	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYYR1	116159	broad.mit.edu	37	21	27945363	27945363	+	5'UTR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2IP	153090	broad.mit.edu	37	9	124329462	124329462	+	5'UTR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72049302	72049302	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72146989	72146989	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85950089	85950089	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK2	166614	broad.mit.edu	37	4	151161094	151161094	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCN	1634	broad.mit.edu	37	12	91539908	91539908	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST2	127579	broad.mit.edu	37	1	154996469	154996469	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX20	11218	broad.mit.edu	37	1	112298538	112298538	+	5'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX50	79009	broad.mit.edu	37	10	70694664	70694664	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB104A	140596	broad.mit.edu	37	8	7698501	7698501	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB110	245913	broad.mit.edu	37	6	49986685	49986685	+	3'UTR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB118	117285	broad.mit.edu	37	20	29960641	29960641	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140269427	140269427	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX9	1660	broad.mit.edu	37	1	182836044	182836044	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC2	84925	broad.mit.edu	37	3	122575272	122575272	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLC1	10395	broad.mit.edu	37	8	12943187	12943187	+	3'UTR	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3502601	3502601	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32361412	32361412	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32430028	32430028	+	Silent	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124349060	124349060	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21789516	21789516	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21827064	21827064	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21011740	21011740	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13871952	13871952	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196741505	196741505	+	Intron	SNP	T	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38885649	38885649	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72277987	72277987	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC1	64215	broad.mit.edu	37	10	22207776	22207776	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25470539	25470539	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3B	1789	broad.mit.edu	37	20	31375284	31375284	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98092004	98092005	+	Intron	DNP	CC	AA	AA			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37665644	37665644	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116485391	116485391	+	Splice_Site	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162894790	162894790	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154679205	154679205	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DQX1	165545	broad.mit.edu	37	2	74751135	74751135	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113866429	113866429	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117392117	117392117	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28989226	28989226	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56504204	56504205	+	Intron	DNP	CC	AA	AA			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNB	1838	broad.mit.edu	37	2	25754371	25754371	+	Silent	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167097478	167097479	+	Frame_Shift_Ins	INS	-	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95662065	95662065	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71828075	71828075	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108363427	108363427	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158139237	158139237	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158524201	158524201	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECH1	1891	broad.mit.edu	37	19	39307034	39307034	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDNRA	1909	broad.mit.edu	37	4	148427917	148427917	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEPD1	80820	broad.mit.edu	37	7	36338682	36338682	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB5	374786	broad.mit.edu	37	17	28380557	28380557	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFS	10278	broad.mit.edu	37	14	23828659	23828659	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHD1	10938	broad.mit.edu	37	11	64622062	64622062	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELSPBP1	64100	broad.mit.edu	37	19	48522898	48522898	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79474654	79474655	+	5'Flank	INS	-	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENGASE	64772	broad.mit.edu	37	17	77079627	77079627	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD1	953	broad.mit.edu	37	10	97607405	97607405	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPDR1	54749	broad.mit.edu	37	7	37989792	37989792	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38227036	38227036	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97251300	97251300	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX4	253152	broad.mit.edu	37	1	92511171	92511171	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15L1	58513	broad.mit.edu	37	19	16504739	16504739	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212522507	212522507	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERGIC2	51290	broad.mit.edu	37	12	29521239	29521239	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESF1	51575	broad.mit.edu	37	20	13698190	13698190	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESF1	51575	broad.mit.edu	37	20	13755882	13755882	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC2	132884	broad.mit.edu	37	4	5570329	5570330	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133783668	133783668	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2RL2	2151	broad.mit.edu	37	5	75913420	75913420	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2	2147	broad.mit.edu	37	11	46744801	46744801	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57419578	57419578	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM101B	359845	broad.mit.edu	37	17	293213	293213	+	Silent	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123A	219287	broad.mit.edu	37	13	25744194	25744194	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM126A	84668	broad.mit.edu	37	7	22999696	22999696	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM131B	9715	broad.mit.edu	37	7	143056554	143056554	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175528535	175528535	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM23A	653567	broad.mit.edu	37	10	17813266	17813266	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM27L	284123	broad.mit.edu	37	17	21826375	21826375	+	RNA	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40A	85369	broad.mit.edu	37	1	110581197	110581197	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34962859	34962859	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190203445	190203445	+	Intron	SNP	C	A	A	rs116705182	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAS	355	broad.mit.edu	37	10	90770502	90770502	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150887062	150887062	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92086338	92086338	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127641291	127641291	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8152944	8152944	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL19	54620	broad.mit.edu	37	16	30941500	30941500	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL2	25827	broad.mit.edu	37	3	33339139	33339139	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15928579	15928579	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO8	26269	broad.mit.edu	37	4	175160363	175160363	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW12	285231	broad.mit.edu	37	3	48423106	48423106	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW4	6468	broad.mit.edu	37	10	103384540	103384540	+	Silent	SNP	G	A	A	rs148535514		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCAR	2204	broad.mit.edu	37	19	55399710	55399710	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHO1	23149	broad.mit.edu	37	19	17881118	17881118	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125094783	125094783	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD2	221472	broad.mit.edu	37	6	36979442	36979442	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102454432	102454432	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR1	2260	broad.mit.edu	37	8	38285346	38285346	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGR	2268	broad.mit.edu	37	1	27939644	27939644	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHIT	2272	broad.mit.edu	37	3	59908137	59908137	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIBCD1	84929	broad.mit.edu	37	9	133779435	133779435	+	3'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152327656	152327656	+	Missense_Mutation	SNP	G	T	T	rs34309186		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29012523	29012523	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMOD	2331	broad.mit.edu	37	1	203225114	203225114	+	Intron	DEL	G	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXD3	27022	broad.mit.edu	37	1	63789229	63789229	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXG1	2290	broad.mit.edu	37	14	29237064	29237064	+	Silent	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXG1	2290	broad.mit.edu	37	14	29237494	29237494	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29623193	29623193	+	5'Flank	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1L	83856	broad.mit.edu	37	9	108286998	108286998	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1L	83856	broad.mit.edu	37	9	108288314	108288314	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39202797	39202797	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161116422	161116422	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26806018	26806018	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26806069	26806069	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46066551	46066551	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46066621	46066621	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRP	2568	broad.mit.edu	37	5	170224482	170224482	+	Silent	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89891536	89891536	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT3	2591	broad.mit.edu	37	2	166605329	166605329	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GART	2618	broad.mit.edu	37	21	34889378	34889378	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153792046	153792046	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATSL3	652968	broad.mit.edu	37	22	30683037	30683038	+	Intron	DNP	CC	AA	AA			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22737808	22737808	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22820507	22820507	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89730567	89730567	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF6	392255	broad.mit.edu	37	8	97172755	97172755	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT1	2673	broad.mit.edu	37	2	69601270	69601270	+	Intron	DEL	A	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179744139	179744139	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179762989	179762989	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55196408	55196408	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH1	2688	broad.mit.edu	37	17	61994973	61994973	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIGYF2	26058	broad.mit.edu	37	2	233613549	233613549	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42088080	42088080	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57429321	57429321	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57430039	57430039	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAZ	2781	broad.mit.edu	37	22	23437951	23437951	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB5	10681	broad.mit.edu	37	15	52420447	52420447	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPNMB	10457	broad.mit.edu	37	7	23306169	23306169	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135429209	135429209	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135441386	135441386	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR12	2835	broad.mit.edu	37	13	27333191	27333191	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154147360	154147360	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR61	83873	broad.mit.edu	37	1	110086428	110086428	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB2	2885	broad.mit.edu	37	17	73316501	73316501	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHL1	29841	broad.mit.edu	37	2	10102598	10102598	+	Silent	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHL1	29841	broad.mit.edu	37	2	10133428	10133428	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHL1	29841	broad.mit.edu	37	2	10135892	10135892	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104449121	104449121	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP2	80852	broad.mit.edu	37	3	14555336	14555336	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK5	2869	broad.mit.edu	37	10	121214575	121214575	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7722034	7722034	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRXCR1	389207	broad.mit.edu	37	4	43032469	43032470	+	Missense_Mutation	DNP	GA	TT	TT	rs146696590	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSC	145258	broad.mit.edu	37	14	95235082	95235082	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA2	2939	broad.mit.edu	37	6	52617725	52617725	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM4	2948	broad.mit.edu	37	1	110201539	110201539	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTP1	2950	broad.mit.edu	37	11	67353590	67353590	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTSE1	51512	broad.mit.edu	37	22	46704833	46704833	+	Missense_Mutation	SNP	C	A	A	rs147669373	byFrequency	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1C	9626	broad.mit.edu	37	3	108626994	108626994	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H2AFY2	55506	broad.mit.edu	37	10	71851628	71851628	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H2AFY	9555	broad.mit.edu	37	5	134696097	134696097	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H6PD	9563	broad.mit.edu	37	1	9324728	9324728	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAP1	9001	broad.mit.edu	37	17	39888998	39888998	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS1	3036	broad.mit.edu	37	19	52220212	52220212	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS5	23354	broad.mit.edu	37	19	36109807	36109807	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCK	3055	broad.mit.edu	37	20	30662601	30662601	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCST	10870	broad.mit.edu	37	19	36394904	36394904	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18687575	18687575	+	Silent	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18869079	18869079	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236727849	236727849	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58133009	58133009	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXB	3074	broad.mit.edu	37	5	74014056	74014056	+	Intron	SNP	G	T	T	rs34187493		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AC	8334	broad.mit.edu	37	6	26124812	26124812	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3D	8351	broad.mit.edu	37	6	26197028	26197028	+	3'UTR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3H	8357	broad.mit.edu	37	6	27778257	27778257	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DRB5	3127	broad.mit.edu	37	6	32557549	32557549	+	5'UTR	SNP	G	A	A	rs17204744		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HM13	81502	broad.mit.edu	37	20	30142535	30142535	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA3	3200	broad.mit.edu	37	7	27149826	27149827	+	Frame_Shift_Ins	INS	-	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46628425	46628425	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC13	3229	broad.mit.edu	37	12	54338921	54338921	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRG	3273	broad.mit.edu	37	3	186383748	186383748	+	5'Flank	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26147610	26147610	+	3'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114405344	114405344	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B3	3293	broad.mit.edu	37	9	99007588	99007588	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12B	116835	broad.mit.edu	37	20	3726710	3726710	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1F	3355	broad.mit.edu	37	3	88041054	88041054	+	3'UTR	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3C	170572	broad.mit.edu	37	3	183773239	183773239	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA4	203100	broad.mit.edu	37	8	38832622	38832622	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTT	3064	broad.mit.edu	37	4	3142434	3142434	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53642720	53642720	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53643940	53643940	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS2	55699	broad.mit.edu	37	1	220320719	220320719	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICK	22858	broad.mit.edu	37	6	52878367	52878367	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI16	3428	broad.mit.edu	37	1	159021489	159021490	+	Nonsense_Mutation	DNP	TG	CT	CT			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFITM2	10581	broad.mit.edu	37	11	308136	308136	+	5'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23358857	23358857	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160445784	160445784	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118624546	118624546	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117122093	117122093	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL20RA	53832	broad.mit.edu	37	6	137325893	137325893	+	Silent	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL20RB	53833	broad.mit.edu	37	3	136714381	136714381	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL22RA1	58985	broad.mit.edu	37	1	24463712	24463712	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RA	3559	broad.mit.edu	37	10	6054679	6054679	+	3'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RA	3559	broad.mit.edu	37	10	6104029	6104029	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL6R	3570	broad.mit.edu	37	1	154401665	154401665	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL9R	3581	broad.mit.edu	37	X	155233519	155233519	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100962638	100962638	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41730000	41730000	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15260439	15260439	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSM2	84684	broad.mit.edu	37	14	36005243	36005243	+	3'UTR	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO7	10527	broad.mit.edu	37	11	9459724	9459724	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCJ	654502	broad.mit.edu	37	3	158983125	158983125	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75858098	75858098	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75902092	75902092	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC3	440073	broad.mit.edu	37	12	176419	176419	+	5'UTR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISOC2	79763	broad.mit.edu	37	19	55967071	55967071	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52214578	52214578	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52344449	52344449	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52361934	52361934	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182347392	182347392	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15573178	15573178	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15648218	15648218	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15655562	15655563	+	Intron	DNP	CT	TA	TA			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31422671	31422671	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31383876	31383876	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52825805	52825805	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156676048	156676048	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156679582	156679582	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVL	3713	broad.mit.edu	37	1	152882759	152882759	+	Missense_Mutation	SNP	C	A	A	rs12045716		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK1	3716	broad.mit.edu	37	1	65323453	65323453	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAM2	58494	broad.mit.edu	37	21	27084702	27084702	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK1	23189	broad.mit.edu	37	9	676866	676866	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170344726	170344726	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA3	3738	broad.mit.edu	37	1	111216207	111216207	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211035492	211035492	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163257105	163257105	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ12	3768	broad.mit.edu	37	17	21319719	21319719	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ15	3772	broad.mit.edu	37	21	39672177	39672177	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78646871	78646871	+	3'UTR	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73905174	73905174	+	3'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138648833	138648833	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138676808	138676808	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36767090	36767090	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDELC1	79070	broad.mit.edu	37	13	103443386	103443386	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDELR3	11015	broad.mit.edu	37	22	38878549	38878549	+	3'UTR	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55946163	55946163	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55976691	55976691	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0368	23392	broad.mit.edu	37	9	114188022	114188022	+	Splice_Site	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43870102	43870102	+	Missense_Mutation	SNP	C	T	T	rs34426631		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43900755	43900755	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27751579	27751579	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27761018	27761018	+	Missense_Mutation	SNP	C	T	T	rs150681595		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0748	9840	broad.mit.edu	37	12	55356106	55356106	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1244	57221	broad.mit.edu	37	6	138530884	138530884	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324L	222223	broad.mit.edu	37	7	86568314	86568314	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324	57535	broad.mit.edu	37	1	109737059	109737059	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2026	158358	broad.mit.edu	37	9	5921606	5921606	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF14	9928	broad.mit.edu	37	1	200530080	200530080	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241706739	241706739	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10363995	10363995	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51900813	51900813	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4A	24137	broad.mit.edu	37	X	69622523	69622523	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55250052	55250052	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55263628	55263628	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL14	57565	broad.mit.edu	37	18	30267098	30267098	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL20	27252	broad.mit.edu	37	1	173703475	173703475	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL6	89857	broad.mit.edu	37	3	183273169	183273169	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL9	55958	broad.mit.edu	37	9	21334168	21334168	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK6	5653	broad.mit.edu	37	19	51466449	51466449	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRG2	346689	broad.mit.edu	37	7	139164786	139164786	+	Intron	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152732371	152732371	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT39	390792	broad.mit.edu	37	17	39119941	39119941	+	Missense_Mutation	SNP	G	T	T	rs145339869	byFrequency	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT71	112802	broad.mit.edu	37	12	52941958	52941958	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-1	140258	broad.mit.edu	37	21	31768427	31768427	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-6	337973	broad.mit.edu	37	21	31914037	31914037	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651199	1651228	+	In_Frame_Del	DEL	AGGCTGTGGGGGCTGTGGCTCCGGCTGTGC	-	-	rs144216147	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP9-9	81870	broad.mit.edu	37	17	39389027	39389027	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54867560	54867560	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129465106	129465106	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129785559	129785559	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112462797	112462797	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112537579	112537579	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107592472	107592472	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107695926	107695926	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133911724	133911724	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133945244	133945244	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBP	3929	broad.mit.edu	37	20	37000013	37000013	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCMT1	51451	broad.mit.edu	37	16	25143891	25143891	+	Intron	SNP	T	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCORL	254251	broad.mit.edu	37	4	17910869	17910869	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136561527	136561527	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB3	11155	broad.mit.edu	37	10	88441349	88441349	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEF1	51176	broad.mit.edu	37	4	109010215	109010215	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEFTY2	7044	broad.mit.edu	37	1	226128808	226128808	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202163598	202163598	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL5	222662	broad.mit.edu	37	6	35787259	35787259	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX5	64211	broad.mit.edu	37	12	113909036	113909036	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55086909	55086909	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55179043	55179043	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIX1	167410	broad.mit.edu	37	5	96460280	96460280	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1B	4010	broad.mit.edu	37	9	129376847	129376847	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090572	238090572	+	RNA	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC387646	387646	broad.mit.edu	37	10	27539347	27539347	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC494141	494141	broad.mit.edu	37	11	18231471	18231471	+	RNA	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC642846	642846	broad.mit.edu	37	12	9452019	9452019	+	3'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC644669	644669	broad.mit.edu	37	18	15322373	15322373	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22804793	22804793	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161016350	161016350	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62599218	62599218	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62849024	62849024	+	Intron	SNP	T	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR5	163404	broad.mit.edu	37	1	99358714	99358714	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141128887	141128887	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141680663	141680663	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141986816	141986816	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170002265	170002265	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC1	55227	broad.mit.edu	37	6	53706983	53706983	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC40	55631	broad.mit.edu	37	1	70618156	70618156	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70452024	70452024	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC8A	56262	broad.mit.edu	37	9	131670679	131670679	+	Silent	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTF	4057	broad.mit.edu	37	3	46492017	46492017	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235969372	235969372	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39893130	39893130	+	Silent	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140992863	140992863	+	Splice_Site	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140996099	140996099	+	Missense_Mutation	SNP	C	A	A	rs143297640		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65350184	65350184	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77814822	77814822	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21201873	21201873	+	Intron	DEL	G	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21207907	21207907	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210561338	210561338	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K11	4296	broad.mit.edu	37	11	65375703	65375703	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K14	9020	broad.mit.edu	37	17	43368045	43368045	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K4	4216	broad.mit.edu	37	6	161470454	161470454	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K1	11184	broad.mit.edu	37	19	39090821	39090821	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K1	11184	broad.mit.edu	37	19	39101766	39101766	+	Silent	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4	4134	broad.mit.edu	37	3	47913670	47913670	+	Intron	SNP	T	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKAP1	79109	broad.mit.edu	37	9	128419837	128419837	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKAPK5	8550	broad.mit.edu	37	12	112323739	112323739	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164853966	164853966	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119727764	119727765	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119748238	119748238	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARS2	92935	broad.mit.edu	37	2	198571111	198571111	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARS2	92935	broad.mit.edu	37	2	198571470	198571470	+	Nonsense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAT2B	27430	broad.mit.edu	37	5	162944524	162944524	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATK	4145	broad.mit.edu	37	19	3784122	3784122	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART3P	442229	broad.mit.edu	37	6	66498958	66498959	+	RNA	DNP	GG	TT	TT			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2L	23263	broad.mit.edu	37	13	113741978	113741978	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM4	4173	broad.mit.edu	37	8	48875661	48875661	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90403780	90403780	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	150881607	150881607	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151095977	151095977	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116410113	116410113	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126770991	126770991	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF6	1953	broad.mit.edu	37	1	3511967	3511967	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42839594	42839594	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEMO1	51072	broad.mit.edu	37	2	32157045	32157050	+	Intron	DEL	AATAAC	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEOX2	4223	broad.mit.edu	37	7	15666317	15666317	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL2A	339175	broad.mit.edu	37	17	60525246	60525246	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141781889	141781889	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGEA5	10724	broad.mit.edu	37	10	103572981	103572981	+	Intron	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIOX	55586	broad.mit.edu	37	22	50926233	50926233	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR518F	574472	broad.mit.edu	37	19	54203218	54203219	+	5'Flank	DNP	CC	AA	AA			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR519A2	574500	broad.mit.edu	37	19	54265548	54265548	+	5'Flank	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR519E	574463	broad.mit.edu	37	19	54182475	54182475	+	5'Flank	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR646	693231	broad.mit.edu	37	20	58883586	58883586	+	RNA	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67IP	84365	broad.mit.edu	37	2	122486106	122486106	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67IP	84365	broad.mit.edu	37	2	122489829	122489829	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151944919	151944919	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP10	4319	broad.mit.edu	37	11	102647152	102647152	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90833201	90833201	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGS	7841	broad.mit.edu	37	2	74689728	74689728	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC1	4360	broad.mit.edu	37	10	17891603	17891603	+	Missense_Mutation	SNP	T	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC2	9902	broad.mit.edu	37	17	60743900	60743900	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX1	259249	broad.mit.edu	37	11	18955987	18955987	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX1	259249	broad.mit.edu	37	11	18956058	18956058	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1P9	11223	broad.mit.edu	37	1	17085699	17085699	+	Intron	SNP	T	C	C	rs3863804		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTAP	4507	broad.mit.edu	37	9	21815398	21815398	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9047816	9047816	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9064152	9064152	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC1	4582	broad.mit.edu	37	1	155160273	155160273	+	Missense_Mutation	SNP	C	A	A	rs144273480		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1272371	1272371	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113563055	113563055	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10359666	10359666	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23884706	23884706	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23887108	23887108	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23900213	23900213	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123332912	123332912	+	3'UTR	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123452795	123452795	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123454407	123454407	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109318301	109318301	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109613918	109613918	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1E	4643	broad.mit.edu	37	15	59553681	59553681	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26482245	26482245	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171249021	171249021	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOD1	4654	broad.mit.edu	37	11	17742882	17742882	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2027642	2027642	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT9	26151	broad.mit.edu	37	17	72768467	72768467	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT9	26151	broad.mit.edu	37	17	72769861	72769861	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15601749	15601749	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBN	4683	broad.mit.edu	37	8	90976832	90976832	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145303954	145303954	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145304535	145304535	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113130863	113130863	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22804541	22804541	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCF1C	654817	broad.mit.edu	37	7	74578854	74578854	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCS1	23413	broad.mit.edu	37	9	132988811	132988811	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDFIP2	54602	broad.mit.edu	37	13	80122303	80122303	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS1	4719	broad.mit.edu	37	2	207007395	207007395	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45171160	45171160	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFAM1	150372	broad.mit.edu	37	22	42805469	42805469	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGFR	4804	broad.mit.edu	37	17	47579381	47579381	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63768392	63768392	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63776051	63776051	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63777405	63777405	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5821830	5821830	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC3	197358	broad.mit.edu	37	16	3600416	3600416	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55496621	55496622	+	Intron	DNP	GG	AA	AA			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247587436	247587436	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56482107	56482107	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56499156	56499156	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NNT	23530	broad.mit.edu	37	5	43656852	43656852	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1AP	9722	broad.mit.edu	37	1	162326802	162326804	+	In_Frame_Del	DEL	CTT	-	-	rs41405649	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS3	4846	broad.mit.edu	37	7	150704420	150704420	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32182044	32182044	+	Intron	DEL	G	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69347862	69347862	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP4	261734	broad.mit.edu	37	1	5987882	5987882	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153660630	153660630	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1H3	10062	broad.mit.edu	37	11	47282972	47282972	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107822187	107822187	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5DC3	51559	broad.mit.edu	37	12	104190758	104190758	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163313600	163313600	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135261743	135261743	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135333220	135333220	+	Silent	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210	23225	broad.mit.edu	37	3	13384657	13384657	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134034830	134034830	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF2B	728343	broad.mit.edu	37	X	101576829	101576829	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228486428	228486428	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28195702	28195702	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123870797	123870797	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50943166	50943166	+	3'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OIT3	170392	broad.mit.edu	37	10	74678128	74678128	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161954010	161954010	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A4	283297	broad.mit.edu	37	11	6898490	6898490	+	Silent	SNP	T	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J5	127385	broad.mit.edu	37	1	159505015	159505015	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Z1	128368	broad.mit.edu	37	1	158577102	158577102	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11G2	390439	broad.mit.edu	37	14	20666456	20666456	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H6	122748	broad.mit.edu	37	14	20692663	20692663	+	Silent	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13D1	286365	broad.mit.edu	37	9	107457241	107457241	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247836335	247836335	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1N1	138883	broad.mit.edu	37	9	125288842	125288842	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AK2	391191	broad.mit.edu	37	1	248129425	248129425	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248685394	248685394	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T3	343173	broad.mit.edu	37	1	248637201	248637201	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W3	343171	broad.mit.edu	37	1	248059478	248059478	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51516184	51516184	+	Silent	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M2	390538	broad.mit.edu	37	15	22369380	22369380	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20295622	20295622	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4Q3	441669	broad.mit.edu	37	14	20215940	20215940	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N2	390077	broad.mit.edu	37	11	5841931	5841931	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N4	390072	broad.mit.edu	37	11	5776568	5776568	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A3	390083	broad.mit.edu	37	11	5968952	5968952	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563359	55563359	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T3	390154	broad.mit.edu	37	11	56020158	56020158	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H2	390151	broad.mit.edu	37	11	55873241	55873241	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J3	81168	broad.mit.edu	37	11	55904269	55904269	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL5	114879	broad.mit.edu	37	11	3123481	3123481	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL7	114881	broad.mit.edu	37	17	45895647	45895647	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSM	5008	broad.mit.edu	37	22	30660402	30660402	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP3	347741	broad.mit.edu	37	17	72939259	72939259	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUB2	78990	broad.mit.edu	37	14	94510400	94510400	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD3	23252	broad.mit.edu	37	1	20216956	20216956	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD5	55593	broad.mit.edu	37	X	48780398	48780398	+	3'UTR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY1	5028	broad.mit.edu	37	3	152554645	152554645	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY8	286530	broad.mit.edu	37	X	1585496	1585496	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC4	8761	broad.mit.edu	37	1	40027305	40027305	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK6	56924	broad.mit.edu	37	15	40564712	40564712	+	Silent	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAM	5066	broad.mit.edu	37	5	102285239	102285239	+	Splice_Site	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANX1	24145	broad.mit.edu	37	11	93912816	93912816	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPD7	11044	broad.mit.edu	37	5	6742546	6742546	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176564445	176564445	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	119097407	119097407	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR5	54852	broad.mit.edu	37	15	69677003	69677004	+	Intron	INS	-	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR6	79957	broad.mit.edu	37	1	156215137	156215137	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP3	54039	broad.mit.edu	37	21	47361419	47361419	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91133828	91133828	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	4967037	4967037	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA5	56143	broad.mit.edu	37	5	140202495	140202495	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140590432	140590432	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB13	56123	broad.mit.edu	37	5	140595689	140595689	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140605138	140605138	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140605156	140605156	+	Silent	SNP	A	G	G	rs3896534	byFrequency	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140503638	140503638	+	Silent	SNP	C	T	T	rs112059899		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140503767	140503767	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA12	26025	broad.mit.edu	37	5	140811375	140811375	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140723759	140723759	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGC5	56097	broad.mit.edu	37	5	140890662	140890662	+	Silent	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82474546	82474546	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82579217	82579217	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCMTD1	115294	broad.mit.edu	37	8	52733190	52733190	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK5	5125	broad.mit.edu	37	9	78710935	78710935	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD4	27250	broad.mit.edu	37	10	112641277	112641277	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD6	10016	broad.mit.edu	37	5	289551	289551	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD7	10081	broad.mit.edu	37	15	65421301	65421301	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE9A	5152	broad.mit.edu	37	21	44108133	44108133	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55144486	55144486	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRB	5159	broad.mit.edu	37	5	149513410	149513410	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA3P	171423	broad.mit.edu	37	1	146650133	146650133	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39875863	39875863	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDSS2	57107	broad.mit.edu	37	6	107566697	107566697	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD11	51248	broad.mit.edu	37	X	69507686	69507686	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73432672	73432672	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD2	267002	broad.mit.edu	37	1	249211251	249211251	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD3	267004	broad.mit.edu	37	10	50724060	50724060	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK2	5232	broad.mit.edu	37	6	49754274	49754274	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP3	114771	broad.mit.edu	37	1	153283102	153283102	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18719923	18719923	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209134259	209134259	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRB	29990	broad.mit.edu	37	7	99950972	99950972	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2A	5305	broad.mit.edu	37	10	22880696	22880696	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2	5311	broad.mit.edu	37	4	88973291	88973291	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAT	5327	broad.mit.edu	37	8	42046329	42046329	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28841261	28841261	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	95791904	95791904	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM2	23207	broad.mit.edu	37	1	16057111	16057111	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD1	5351	broad.mit.edu	37	1	12017832	12017832	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD1	5351	broad.mit.edu	37	1	12018011	12018011	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131859727	131859727	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLDC1	154197	broad.mit.edu	37	6	160239748	160239748	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1D	51082	broad.mit.edu	37	13	28240074	28240074	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16287736	16287736	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU3F4	5456	broad.mit.edu	37	X	82763299	82763299	+	5'UTR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARG	5468	broad.mit.edu	37	3	12475578	12475578	+	Silent	SNP	C	A	A	rs149367249	byFrequency	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF1	5475	broad.mit.edu	37	X	18845335	18845335	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIL2	23759	broad.mit.edu	37	22	22029254	22029254	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIL4	85313	broad.mit.edu	37	6	149846373	149846373	+	Intron	DEL	A	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3F	89801	broad.mit.edu	37	X	49142326	49142326	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R4	57718	broad.mit.edu	37	14	94725265	94725265	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF12	390999	broad.mit.edu	37	1	12836280	12836280	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23522333	23522333	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54387536	54387537	+	Intron	INS	-	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCI	5584	broad.mit.edu	37	3	170009803	170009803	+	Intron	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD2	25865	broad.mit.edu	37	19	47194946	47194946	+	Intron	DEL	C	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF40B	25766	broad.mit.edu	37	12	50037160	50037160	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF6	24148	broad.mit.edu	37	20	62659949	62659949	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142458452	142458452	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS21	10942	broad.mit.edu	37	16	2868692	2868692	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD2	84249	broad.mit.edu	37	5	139192788	139192788	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD4	23550	broad.mit.edu	37	2	113958726	113958726	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCRA	171558	broad.mit.edu	37	6	42891135	42891135	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209355333	209355333	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTMS	5763	broad.mit.edu	37	12	6878942	6878942	+	Intron	SNP	G	T	T	rs144752841	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214705501	214705501	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8493031	8493031	+	Intron	DEL	T	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	61989206	61989206	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220162048	220162048	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121651939	121651939	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121652034	121652034	+	Silent	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52233535	52233535	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1642638	1642638	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB28	9364	broad.mit.edu	37	4	13371634	13371634	+	Intron	DEL	A	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG1	5896	broad.mit.edu	37	11	36598063	36598063	+	3'UTR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI1	10743	broad.mit.edu	37	17	17701461	17701461	+	Silent	SNP	G	T	T	rs146112263	byFrequency	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAMP1	10267	broad.mit.edu	37	2	238820077	238820077	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP9	10048	broad.mit.edu	37	6	13644892	13644892	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASEF	158158	broad.mit.edu	37	9	85605398	85605399	+	Intron	DEL	AC	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79310347	79310347	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP4	5928	broad.mit.edu	37	1	33116224	33116224	+	5'Flank	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM42	79171	broad.mit.edu	37	19	36120454	36120454	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79312559	79312559	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1P	5969	broad.mit.edu	37	2	79363206	79363206	+	RNA	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79253232	79253232	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103294493	103294493	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8415473	8415473	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFESD	317671	broad.mit.edu	37	5	94990059	94990059	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107075931	107075931	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS12	6002	broad.mit.edu	37	4	3314173	3314173	+	5'Flank	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101051226	101051226	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240933326	240933326	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240969401	240969401	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49578778	49578778	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49583332	49583332	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHCE	6006	broad.mit.edu	37	1	25717390	25717390	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOD	29984	broad.mit.edu	37	11	66833438	66833438	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICTOR	253260	broad.mit.edu	37	5	38960461	38960461	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK3	8780	broad.mit.edu	37	18	21061269	21061269	+	3'UTR	DEL	A	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPPLY2	134701	broad.mit.edu	37	6	84567041	84567041	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPPLY2	134701	broad.mit.edu	37	6	84567143	84567143	+	3'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87013161	87013161	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE3	6037	broad.mit.edu	37	14	21359949	21359949	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF123	63891	broad.mit.edu	37	3	49735706	49735706	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF123	63891	broad.mit.edu	37	3	49749945	49749945	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF170	81790	broad.mit.edu	37	8	42720424	42720424	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF5	6048	broad.mit.edu	37	6	32146358	32146358	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55534202	55534202	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21795831	21795831	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL10L	140801	broad.mit.edu	37	14	47120456	47120456	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL23P8	222901	broad.mit.edu	37	7	20867354	20867355	+	RNA	DNP	GG	CT	CT	rs114219912	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS16	6217	broad.mit.edu	37	19	39926288	39926288	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC1	51319	broad.mit.edu	37	3	157993812	157993812	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4	57142	broad.mit.edu	37	2	55252705	55252705	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67753760	67753760	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNDC2A	84127	broad.mit.edu	37	16	12142639	12142639	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRG	6258	broad.mit.edu	37	1	165406478	165406478	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38959634	38959634	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38980787	38980787	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39008322	39008322	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237608780	237608780	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33895391	33895391	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34040550	34040550	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34078209	34078209	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34113753	34113753	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9L	219285	broad.mit.edu	37	7	92764413	92764413	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASS6	163786	broad.mit.edu	37	1	100598391	100598391	+	5'UTR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCLT1	132320	broad.mit.edu	37	4	129880846	129880846	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165986887	165986887	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1B	6338	broad.mit.edu	37	16	23364156	23364156	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4272883	4272883	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169581604	169581604	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83634567	83634567	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6B	10501	broad.mit.edu	37	19	4558098	4558098	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT11	55752	broad.mit.edu	37	4	77949619	77949619	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETDB1	9869	broad.mit.edu	37	1	150917340	150917340	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L2	26470	broad.mit.edu	37	16	29889672	29889672	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS2IP	9169	broad.mit.edu	37	12	46342248	46342248	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67137561	67137561	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67154974	67154974	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67155937	67155937	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D3C	10044	broad.mit.edu	37	9	130540833	130540833	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D4A	63898	broad.mit.edu	37	8	19192410	19192410	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL3	6457	broad.mit.edu	37	15	84287069	84287069	+	3'UTR	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC4	399694	broad.mit.edu	37	15	49118130	49118130	+	3'UTR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOX	6473	broad.mit.edu	37	X	601706	601706	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232649546	232649546	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164757588	164757588	+	Intron	DEL	C	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKA1	220134	broad.mit.edu	37	18	47908532	47908532	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKIV2L	6499	broad.mit.edu	37	6	31927176	31927176	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAIN1	122060	broad.mit.edu	37	13	78337494	78337494	+	3'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A2	6555	broad.mit.edu	37	13	103718307	103718307	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A6	9990	broad.mit.edu	37	15	34546860	34546860	+	Intron	SNP	T	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A1	6563	broad.mit.edu	37	18	43328320	43328320	+	Intron	DEL	C	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A4	121260	broad.mit.edu	37	12	129293587	129293587	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A3	9123	broad.mit.edu	37	17	80194624	80194624	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC19A3	80704	broad.mit.edu	37	2	228566913	228566913	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A3	6581	broad.mit.edu	37	6	160863758	160863758	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103017972	103017972	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A10	81031	broad.mit.edu	37	20	45358045	45358045	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A10	81031	broad.mit.edu	37	20	45362406	45362406	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A2	6514	broad.mit.edu	37	3	170732587	170732587	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A6	55676	broad.mit.edu	37	2	32428324	32428324	+	Intron	DEL	G	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B1	10237	broad.mit.edu	37	17	47780409	47780409	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F4	341880	broad.mit.edu	37	14	58055930	58055930	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A1	206358	broad.mit.edu	37	5	150846759	150846759	+	Splice_Site	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220494042	220494042	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A7	9497	broad.mit.edu	37	3	27439621	27439621	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A7	9497	broad.mit.edu	37	3	27475315	27475315	+	Intron	SNP	T	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A11	115584	broad.mit.edu	37	16	24888571	24888571	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A2	6524	broad.mit.edu	37	16	31500068	31500068	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A10P	386757	broad.mit.edu	37	16	32893825	32893825	+	5'Flank	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A11	6538	broad.mit.edu	37	3	10971122	10971122	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55690563	55690563	+	5'UTR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A13	157724	broad.mit.edu	37	8	87226561	87226561	+	3'UTR	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173542506	173542506	+	Intron	DEL	T	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A3R1	9368	broad.mit.edu	37	17	72764449	72764449	+	Intron	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20870080	20870080	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20896250	20896250	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN11	91607	broad.mit.edu	37	17	33690157	33690157	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20550132	20550132	+	Frame_Shift_Del	DEL	A	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168310186	168310186	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144904367	144904367	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164908507	164908507	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAP1	60682	broad.mit.edu	37	6	71562165	71562165	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC5	23137	broad.mit.edu	37	9	72879306	72879306	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC5	23137	broad.mit.edu	37	9	72965093	72965093	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMEK2	57223	broad.mit.edu	37	2	55808792	55808792	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAPC3	6619	broad.mit.edu	37	9	15433602	15433602	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-20	100033460	broad.mit.edu	37	15	25470204	25470204	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25318361	25318361	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51442811	51442811	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51569590	51569590	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1168874	1168874	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPACA1	81833	broad.mit.edu	37	6	88773885	88773885	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG6	9576	broad.mit.edu	37	10	22680714	22680714	+	Silent	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG7	9552	broad.mit.edu	37	17	4864095	4864095	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN3	139067	broad.mit.edu	37	X	142605090	142605090	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	123848705	123848705	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA6	54558	broad.mit.edu	37	1	48918776	48918776	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35697768	35697768	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220344800	220344800	+	Silent	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220354290	220354290	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG7	6687	broad.mit.edu	37	16	89598805	89598805	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55904873	55904873	+	5'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPP2	6694	broad.mit.edu	37	2	234967486	234967486	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55653320	55653320	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158648145	158648145	+	Intron	DEL	A	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149522153	149522153	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX7	280658	broad.mit.edu	37	X	52685548	52685548	+	5'Flank	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA3	51046	broad.mit.edu	37	18	55024767	55024767	+	Intron	DEL	G	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT5B	6777	broad.mit.edu	37	17	40364013	40364013	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIL	6491	broad.mit.edu	37	1	47746154	47746154	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK24	8428	broad.mit.edu	37	13	99127110	99127110	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK38	11329	broad.mit.edu	37	6	36485593	36485593	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK3	6788	broad.mit.edu	37	8	99761440	99761440	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN3	29966	broad.mit.edu	37	14	31420029	31420029	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN	6801	broad.mit.edu	37	2	37111118	37111118	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP4	252983	broad.mit.edu	37	17	53077255	53077255	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUCLG1	8802	broad.mit.edu	37	2	84668320	84668320	+	Intron	SNP	T	C	C	rs80272300	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SURF6	6838	broad.mit.edu	37	9	136203044	136203044	+	5'UTR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUV39H2	79723	broad.mit.edu	37	10	14939506	14939506	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149879341	149879341	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149884838	149884838	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113166498	113166498	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP1	6847	broad.mit.edu	37	1	115489023	115489023	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2	10388	broad.mit.edu	37	20	58440418	58440418	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR2	9287	broad.mit.edu	37	6	132938666	132938667	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAB2	23118	broad.mit.edu	37	6	149700010	149700010	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF13	6884	broad.mit.edu	37	1	109618666	109618666	+	5'Flank	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32630549	32630549	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32631092	32631092	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160042490	160042490	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R1	50834	broad.mit.edu	37	5	9629469	9629469	+	Missense_Mutation	SNP	C	A	A	rs145804099		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D23	55773	broad.mit.edu	37	3	100018212	100018213	+	Intron	INS	-	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3C	414060	broad.mit.edu	37	17	34641410	34641410	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX20	57057	broad.mit.edu	37	7	35242325	35242325	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79278703	79278703	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX4	9496	broad.mit.edu	37	17	59560841	59560841	+	Silent	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139719828	139719830	+	In_Frame_Del	DEL	CCG	-	-	rs13306050	byFrequency;by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEA1	6917	broad.mit.edu	37	8	54885561	54885561	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF12	6938	broad.mit.edu	37	15	57544626	57544626	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	52896228	52896228	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHHL1	126637	broad.mit.edu	37	1	152057341	152057341	+	3'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCN2	6948	broad.mit.edu	37	22	31007170	31007170	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP11	6954	broad.mit.edu	37	6	35088692	35088692	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD7	23424	broad.mit.edu	37	9	100222868	100222868	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151742669	151742669	+	3'UTR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEC	7006	broad.mit.edu	37	4	48170598	48170598	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFRC	7037	broad.mit.edu	37	3	195791401	195791401	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB2	7042	broad.mit.edu	37	1	218610720	218610720	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBI	7045	broad.mit.edu	37	5	135390481	135390481	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133975184	133975184	+	Intron	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEM5	284486	broad.mit.edu	37	1	151824854	151824854	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THG1L	54974	broad.mit.edu	37	5	157164844	157164844	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11582808	11582808	+	Intron	SNP	G	T	T	rs111410791		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11632861	11632861	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11675994	11675994	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32575214	32575214	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156347577	156347577	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TINAG	27283	broad.mit.edu	37	6	54219275	54219275	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164394569	164394569	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE3	7090	broad.mit.edu	37	15	70358421	70358421	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR3	7098	broad.mit.edu	37	4	187004712	187004712	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO4	255104	broad.mit.edu	37	1	20082238	20082238	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED7-TICAM2	100302736	broad.mit.edu	37	5	114956441	114956441	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM168	64418	broad.mit.edu	37	7	112407810	112407810	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM38B	55151	broad.mit.edu	37	9	108510527	108510527	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM59	9528	broad.mit.edu	37	1	54506565	54506565	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63B	55362	broad.mit.edu	37	6	44103977	44103977	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19698982	19698982	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS2	7113	broad.mit.edu	37	21	42866466	42866466	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS6	164656	broad.mit.edu	37	22	37494373	37494373	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMSB15B	286527	broad.mit.edu	37	X	103216366	103216366	+	5'Flank	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117844312	117844312	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP6	7130	broad.mit.edu	37	2	152214116	152214116	+	5'UTR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP6	7130	broad.mit.edu	37	2	152235871	152235871	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF9	3604	broad.mit.edu	37	1	7997840	7997840	+	Intron	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF4	7292	broad.mit.edu	37	1	173176276	173176276	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175086035	175086035	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577565	7577565	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPSD1	23430	broad.mit.edu	37	16	1306527	1306527	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10916317	10916317	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10934019	10934019	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF6	7189	broad.mit.edu	37	11	36511949	36511949	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42226214	42226214	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC2L	51693	broad.mit.edu	37	16	88926508	88926508	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	73056892	73056892	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIL	9865	broad.mit.edu	37	7	28996417	28996417	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM25	7706	broad.mit.edu	37	17	54969341	54969341	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM33	51592	broad.mit.edu	37	1	114969832	114969832	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14474198	14474198	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72969098	72969098	+	Intron	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38225483	38225483	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31332588	31332588	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73442747	73442747	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49693476	49693476	+	Silent	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM5	29850	broad.mit.edu	37	11	2426087	2426087	+	3'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM5	29850	broad.mit.edu	37	11	2432800	2432800	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77358877	77358877	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77502755	77502756	+	Frame_Shift_Ins	INS	-	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142627356	142627356	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRYX3	136541	broad.mit.edu	37	7	141955399	141955399	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSEN34	79042	broad.mit.edu	37	19	54697134	54697134	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31770398	31770398	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN8	7103	broad.mit.edu	37	12	71833786	71833786	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK2	146057	broad.mit.edu	37	15	43093914	43093914	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC12	54970	broad.mit.edu	37	11	113205804	113205804	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC39B	158219	broad.mit.edu	37	9	15226078	15226078	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC3	7267	broad.mit.edu	37	21	38507791	38507791	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80749948	80749948	+	Silent	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL3	26140	broad.mit.edu	37	3	9869038	9869038	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179449567	179449567	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB2B	347733	broad.mit.edu	37	6	3225005	3225005	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB4	10382	broad.mit.edu	37	19	6495933	6495933	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP5	114791	broad.mit.edu	37	15	22864307	22864307	+	Silent	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
T	6862	broad.mit.edu	37	6	166574331	166574331	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBL4B	164153	broad.mit.edu	37	1	110655096	110655096	+	5'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBN2	254048	broad.mit.edu	37	7	138946381	138946381	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN2B	137886	broad.mit.edu	37	8	59339292	59339292	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A3	54659	broad.mit.edu	37	2	234637908	234637908	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULBP2	80328	broad.mit.edu	37	6	150267903	150267903	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43531679	43531679	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43557471	43557471	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54340974	54340974	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45A	55898	broad.mit.edu	37	15	91489890	91489890	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF3B	65109	broad.mit.edu	37	X	118979178	118979178	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215848721	215848721	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USHBP1	83878	broad.mit.edu	37	19	17370570	17370570	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP33	23032	broad.mit.edu	37	1	78207349	78207349	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6	9098	broad.mit.edu	37	17	5037178	5037178	+	Intron	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXS1	80146	broad.mit.edu	37	2	106761802	106761803	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	107048137	107048137	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	109920293	109920293	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48928682	48928682	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48997134	48997134	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49053199	49053199	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	5114849	5114849	+	IGR	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58133303	58133303	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	85906601	85906601	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	126995155	126995155	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34362449	34362449	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58361666	58361666	+	IGR	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	76532404	76532404	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	7719178	7719178	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8167691	8167691	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8167718	8167718	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8787812	8787812	+	IGR	DEL	C	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	26692364	26692364	+	IGR	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	45169223	45169223	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	63754439	63754439	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68406805	68406805	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90823999	90823999	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20098164	20098164	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20146926	20146926	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20264681	20264681	+	IGR	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102369178	102369178	+	IGR	DEL	C	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20833187	20833187	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22546753	22546753	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96984998	96984998	+	IGR	DEL	T	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	25465877	25465877	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32077781	32077781	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32402176	32402176	+	IGR	SNP	G	T	T	rs138177040	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32926812	32926812	+	IGR	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33401983	33401983	+	IGR	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33500718	33500718	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33661547	33661547	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20417291	20417291	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20678990	20678990	+	IGR	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	33893702	33893702	+	IGR	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39421622	39421622	+	IGR	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51834462	51834462	+	IGR	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60368418	60368418	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	13152153	13152153	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14207908	14207908	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26231653	26231653	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41900832	41900832	+	IGR	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	7135447	7135447	+	IGR	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15777964	15777964	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20989350	20989350	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23040057	23040057	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35024393	35024393	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51262066	51262066	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53819313	53819313	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	101721992	101721992	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104615709	104615709	+	IGR	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	117283495	117283495	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149060138	149060138	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149092255	149092255	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149096515	149096515	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149106128	149106128	+	IGR	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157609953	157609953	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	160905624	160905624	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164326248	164326248	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168338797	168338797	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209406043	209406043	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	224052115	224052115	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	68708340	68708340	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	73570761	73570761	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	34341593	34341593	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10614916	10614916	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10623294	10623294	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10863098	10863098	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11180983	11180983	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181542	11181542	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14898460	14898460	+	IGR	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20618547	20618547	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24475206	24475206	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32114340	32114340	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9865898	9865898	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349610	16349610	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	39345023	39345023	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130751665	130751665	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131051534	131051534	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132357766	132357766	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133020264	133020264	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	175164080	175164080	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91791096	91791096	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91936094	91936094	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92075672	92075672	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116745638	116745638	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	123003358	123003358	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	183802003	183802003	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26057522	26057522	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	39323174	39323174	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11373754	11373754	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13650013	13650013	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	158736342	158736342	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	170754373	170754373	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	185480612	185480612	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	46726465	46726465	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	57576459	57576459	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70213023	70213023	+	IGR	SNP	T	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	10664760	10664760	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110284781	110284781	+	IGR	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110528015	110528015	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130329939	130329939	+	IGR	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	157117032	157117032	+	IGR	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	170793426	170793426	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882016	29882016	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882398	29882398	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	113401436	113401436	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	25732203	25732203	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27620505	27620505	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48181582	48181582	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	79424247	79424247	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	121160917	121160917	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143816159	143816159	+	IGR	DEL	G	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	26315952	26315952	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56296594	56296594	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56358462	56358462	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56373214	56373214	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217481	57217481	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88194069	88194069	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88194581	88194581	+	IGR	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88268495	88268495	+	IGR	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	81471801	81471801	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92930124	92930124	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109932443	109932443	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	124282527	124282527	+	IGR	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	1247347	1247347	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	138558106	138558106	+	IGR	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27609886	27609886	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66837029	66837029	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68788934	68788934	+	IGR	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7478006	7478006	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84674044	84674044	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110864553	110864553	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120002573	120002573	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120337979	120337979	+	IGR	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	121673223	121673223	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25213109	25213109	+	IGR	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48136184	48136185	+	IGR	INS	-	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	58011623	58011623	+	IGR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79829188	79829188	+	IGR	SNP	T	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79829419	79829419	+	IGR	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97677209	97677209	+	IGR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	14092409	14092409	+	IGR	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV2	7410	broad.mit.edu	37	9	136633629	136633629	+	Missense_Mutation	SNP	C	A	A	rs145738821		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177632919	177632919	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL3	389136	broad.mit.edu	37	3	86996309	86996309	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM1	284415	broad.mit.edu	37	19	54561767	54561767	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM2A	222008	broad.mit.edu	37	7	54617553	54617553	+	Silent	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTCN1	79679	broad.mit.edu	37	1	117699283	117699283	+	Missense_Mutation	SNP	C	T	T	rs144508898	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98823753	98823753	+	Intron	SNP	T	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98844593	98844593	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF1	8936	broad.mit.edu	37	6	110428292	110428292	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70880936	70880937	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR5	11091	broad.mit.edu	37	9	137017125	137017125	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241913068	241913068	+	Intron	SNP	G	T	T	rs75726248		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR69	164781	broad.mit.edu	37	2	228736386	228736386	+	5'UTR	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR78	79819	broad.mit.edu	37	1	67299229	67299229	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54363593	54363593	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR90	197335	broad.mit.edu	37	16	712767	712767	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK2	65268	broad.mit.edu	37	9	96061654	96061654	+	Intron	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT2	7472	broad.mit.edu	37	7	116960854	116960854	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT8A	7478	broad.mit.edu	37	5	137426515	137426515	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108626745	108626745	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31609340	31609340	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YBX1	4904	broad.mit.edu	37	1	43162350	43162350	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YBX1	4904	broad.mit.edu	37	1	43166670	43166670	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF7	285525	broad.mit.edu	37	4	44624425	44624425	+	3'UTR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167086370	167086370	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZER1	10444	broad.mit.edu	37	9	131513849	131513849	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77764145	77764145	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP14	57677	broad.mit.edu	37	19	36831324	36831324	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106814054	106814054	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFR	51663	broad.mit.edu	37	5	32385791	32385791	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFY	7544	broad.mit.edu	37	Y	2847526	2847526	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM3	114026	broad.mit.edu	37	19	57646434	57646434	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45850047	45850047	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF138	7697	broad.mit.edu	37	7	64291822	64291822	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF154	7710	broad.mit.edu	37	19	58213094	58213094	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF167	55888	broad.mit.edu	37	3	44620971	44620971	+	Intron	SNP	G	A	A	rs140588913	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF177	7730	broad.mit.edu	37	19	9492374	9492374	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF211	10520	broad.mit.edu	37	19	58152597	58152597	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF226	7769	broad.mit.edu	37	19	44679818	44679818	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22270783	22270783	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22272257	22272257	+	3'UTR	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF25	219749	broad.mit.edu	37	10	38246347	38246347	+	Splice_Site	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF2	7549	broad.mit.edu	37	2	95847613	95847613	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF304	57343	broad.mit.edu	37	19	57869299	57869299	+	3'UTR	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF345	25850	broad.mit.edu	37	19	37367788	37367788	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF383	163087	broad.mit.edu	37	19	37727054	37727054	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF417	147687	broad.mit.edu	37	19	58420582	58420582	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF432	9668	broad.mit.edu	37	19	52538395	52538395	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF485	220992	broad.mit.edu	37	10	44112805	44112805	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31038886	31038886	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF568	374900	broad.mit.edu	37	19	37440956	37440956	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF569	148266	broad.mit.edu	37	19	37904566	37904566	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	64918	64918	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF616	90317	broad.mit.edu	37	19	52627352	52627352	+	Intron	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71632734	71632734	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57522855	57522855	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63674534	63674534	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF74	7625	broad.mit.edu	37	22	20761064	20761064	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF761	388561	broad.mit.edu	37	19	53958705	53958705	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF770	54989	broad.mit.edu	37	15	35273923	35273923	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185731105	185731106	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF829	374899	broad.mit.edu	37	19	37383322	37383322	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF836	162962	broad.mit.edu	37	19	52659499	52659499	+	Silent	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF83	55769	broad.mit.edu	37	19	53155989	53155989	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF876P	642280	broad.mit.edu	37	4	206633	206633	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZRANB3	84083	broad.mit.edu	37	2	136023099	136023099	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN20	7579	broad.mit.edu	37	1	33945125	33945126	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZW10	9183	broad.mit.edu	37	11	113618860	113618860	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	134648752	134648752	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30982614	30982614	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31303061	31303061	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22205251	22205251	+	RNA	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25487115	25487115	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	15457788	15457788	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	35037363	35037363	+	5'Flank	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	42002586	42002586	+	5'Flank	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148882221	148882221	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	1854900	1854900	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89247003	89247003	+	RNA	SNP	G	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89292386	89292386	+	RNA	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89475847	89475847	+	RNA	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89619923	89619923	+	Intron	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90259791	90259791	+	Intron	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135249208	135249208	+	5'Flank	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69342097	69342097	+	Silent	SNP	C	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9710537	9710537	+	5'Flank	SNP	C	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23972209	23972209	+	Intron	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	70672130	70672131	+	Intron	DNP	GG	TT	TT			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142231754	142231754	+	Intron	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	15047938	15047938	+	RNA	SNP	A	G	G			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69634675	69634675	+	RNA	SNP	G	A	A			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13329312	13329312	+	5'Flank	SNP	G	T	T			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
