Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AACSL	729522	broad.mit.edu	37	5	178199431	178199431	+	RNA	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASS	10157	broad.mit.edu	37	7	121758574	121758574	+	Intron	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABAT	18	broad.mit.edu	37	16	8844366	8844366	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66933232	66933232	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC4	10257	broad.mit.edu	37	13	95727813	95727813	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG5	64240	broad.mit.edu	37	2	44051610	44051610	+	Intron	SNP	T	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG5	64240	broad.mit.edu	37	2	44065004	44065004	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL1	25	broad.mit.edu	37	9	133759670	133759671	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148590238	148590238	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148618713	148618713	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABR	29	broad.mit.edu	37	17	960259	960259	+	Missense_Mutation	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20482754	20482754	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20563723	20563723	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA1	58	broad.mit.edu	37	1	229568145	229568145	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL7B	10880	broad.mit.edu	37	9	111617359	111617359	+	Silent	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR3B	57180	broad.mit.edu	37	7	152550643	152550643	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156923992	156923992	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107131482	107131483	+	Splice_Site	DNP	GG	TT	TT			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM8	101	broad.mit.edu	37	10	135083318	135083318	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS13	11093	broad.mit.edu	37	9	136304591	136304591	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5235320	5235320	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5303785	5303785	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	129015676	129015676	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43777793	43777793	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAP2	55803	broad.mit.edu	37	17	29280311	29280311	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45699488	45699488	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7766996	7766996	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123071266	123071266	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131797820	131797820	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRBK1	156	broad.mit.edu	37	11	67048136	67048136	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRBK2	157	broad.mit.edu	37	22	26118422	26118422	+	3'UTR	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L2	84632	broad.mit.edu	37	10	116075543	116075543	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGK	55750	broad.mit.edu	37	7	141352708	141352708	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTR1	185	broad.mit.edu	37	3	148459218	148459218	+	Frame_Shift_Del	DEL	C	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247014498	247014498	+	Nonsense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK1	203	broad.mit.edu	37	9	130630179	130630179	+	3'UTR	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK2	204	broad.mit.edu	37	1	33480108	33480108	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP3	10566	broad.mit.edu	37	12	4737964	4737964	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP4	8852	broad.mit.edu	37	X	49961519	49961519	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH3A1	218	broad.mit.edu	37	17	19645887	19645887	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDOB	229	broad.mit.edu	37	9	104188805	104188805	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALLC	55821	broad.mit.edu	37	2	3749102	3749102	+	Missense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113351658	113351658	+	Nonsense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD2	271	broad.mit.edu	37	1	110170267	110170267	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC4	29945	broad.mit.edu	37	4	25408818	25408818	+	Splice_Site	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114278501	114278501	+	Silent	SNP	C	A	A	rs144821187	byFrequency	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFY1	51479	broad.mit.edu	37	17	4167249	4167249	+	5'UTR	SNP	A	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKLE1	126549	broad.mit.edu	37	19	17396645	17396645	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20A3	441425	broad.mit.edu	37	9	67965193	67965194	+	Intron	INS	-	TTG	TTG	rs150724386	by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20A4	728747	broad.mit.edu	37	9	69416103	69416103	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14763832	14763832	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14799003	14799003	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69300168	69300168	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANUBL1	93550	broad.mit.edu	37	10	46158965	46158965	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3D1	8943	broad.mit.edu	37	19	2112986	2112986	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APAF1	317	broad.mit.edu	37	12	99053024	99053024	+	Silent	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
API5	8539	broad.mit.edu	37	11	43345189	43345189	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC1	339	broad.mit.edu	37	12	7803640	7803640	+	Silent	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APPBP2	10513	broad.mit.edu	37	17	58525167	58525167	+	Missense_Mutation	SNP	A	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130219415	130219415	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF4	50649	broad.mit.edu	37	2	131785625	131785626	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSI	340075	broad.mit.edu	37	5	149677742	149677742	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMT	438	broad.mit.edu	37	X	1748717	1748717	+	Silent	SNP	C	A	A	rs144935309		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197087023	197087023	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATCAY	85300	broad.mit.edu	37	19	3907716	3907716	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6	22926	broad.mit.edu	37	1	161736078	161736078	+	5'Flank	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160121797	160121797	+	5'UTR	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117704336	117704336	+	3'UTR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11038727	11038727	+	Splice_Site	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11039277	11039277	+	3'UTR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANP	54971	broad.mit.edu	37	16	88110134	88110134	+	Intron	SNP	A	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARD1	580	broad.mit.edu	37	2	215610628	215610628	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165548104	165548104	+	Nonsense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCKDHB	594	broad.mit.edu	37	6	80912907	80912907	+	Missense_Mutation	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2L2	599	broad.mit.edu	37	14	23778191	23778191	+	3'UTR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60475257	60475257	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL1	80341	broad.mit.edu	37	20	31604730	31604730	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL1	80341	broad.mit.edu	37	20	31606945	31606945	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK2	9024	broad.mit.edu	37	11	1475705	1475705	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSG	682	broad.mit.edu	37	19	581244	581244	+	Intron	SNP	T	C	C	rs112971000	by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A3	10384	broad.mit.edu	37	6	26450523	26450523	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL9	153579	broad.mit.edu	37	5	180485398	180485398	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUD13	84811	broad.mit.edu	37	11	116640920	116640920	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf81	79949	broad.mit.edu	37	10	115531754	115531754	+	Missense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112677973	112677973	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf74	338809	broad.mit.edu	37	12	93100529	93100529	+	Frame_Shift_Del	DEL	C	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf159	80017	broad.mit.edu	37	14	91671273	91671273	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf49	161176	broad.mit.edu	37	14	95884179	95884179	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf53	78995	broad.mit.edu	37	17	42235288	42235288	+	Nonsense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf68	80169	broad.mit.edu	37	17	8135176	8135176	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf21	126353	broad.mit.edu	37	19	763550	763550	+	Missense_Mutation	SNP	G	C	C	rs143887834	byFrequency	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf113	79729	broad.mit.edu	37	1	36786257	36786257	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf113	79729	broad.mit.edu	37	1	36786292	36786292	+	Silent	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf189	388701	broad.mit.edu	37	1	154172963	154172963	+	Nonsense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf114	92747	broad.mit.edu	37	20	31893790	31893790	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf45	54069	broad.mit.edu	37	21	33642890	33642890	+	Intron	SNP	T	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf42	150297	broad.mit.edu	37	22	32554966	32554966	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf31	132001	broad.mit.edu	37	3	11858847	11858847	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf59	151963	broad.mit.edu	37	3	192516570	192516570	+	Missense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf29	113763	broad.mit.edu	37	7	150027823	150027823	+	Silent	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57347232	57347232	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf85	138241	broad.mit.edu	37	9	74526699	74526699	+	Nonsense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf95	54981	broad.mit.edu	37	9	77692219	77692219	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49708979	49708979	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA5A	763	broad.mit.edu	37	16	87969917	87969917	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13563669	13563669	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140901189	140901189	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2742672	2742672	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2786340	2786340	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181741171	181741171	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40069130	40069130	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54537612	54537612	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27463731	27463731	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO2	10241	broad.mit.edu	37	17	46928546	46928546	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCRL	10203	broad.mit.edu	37	2	188211044	188211044	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKK2	10645	broad.mit.edu	37	12	121712338	121712338	+	5'UTR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARS	833	broad.mit.edu	37	11	3059249	3059249	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC5	57082	broad.mit.edu	37	15	40954447	40954447	+	3'UTR	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN2	147381	broad.mit.edu	37	18	70209031	70209031	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219896377	219896377	+	Nonsense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC13	152206	broad.mit.edu	37	3	42798490	42798490	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179702359	179702359	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179732906	179732906	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC25	55246	broad.mit.edu	37	8	27606050	27606050	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR6	1235	broad.mit.edu	37	6	167417200	167417200	+	5'UTR	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21975057	21975057	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95161196	95161196	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59157856	59157856	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDX2	1045	broad.mit.edu	37	13	28537437	28537437	+	Missense_Mutation	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA3A	10136	broad.mit.edu	37	1	22336244	22336244	+	Missense_Mutation	SNP	G	T	T	rs146504981		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP250	11190	broad.mit.edu	37	20	34092055	34092056	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CETN1	1068	broad.mit.edu	37	18	580598	580598	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFB	629	broad.mit.edu	37	6	31901713	31901713	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196658675	196658675	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA4	1137	broad.mit.edu	37	20	61980997	61980997	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB1	1140	broad.mit.edu	37	17	7358971	7358971	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB3	1142	broad.mit.edu	37	8	42586930	42586930	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143028446	143028446	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4F	165530	broad.mit.edu	37	2	71043103	71043103	+	Intron	SNP	C	A	A	rs143111244	by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSPN	63967	broad.mit.edu	37	1	36202032	36202032	+	3'UTR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMA1	1215	broad.mit.edu	37	14	24976666	24976666	+	Nonsense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMTM5	116173	broad.mit.edu	37	14	23848446	23848446	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79033143	79033143	+	Missense_Mutation	SNP	A	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP2	55748	broad.mit.edu	37	18	72183517	72183517	+	Nonsense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58582579	58582579	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58582601	58582601	+	Intron	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	2404388	2404388	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146471330	146471330	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146741138	146741138	+	Missense_Mutation	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125367414	125367414	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32146700	32146700	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70745761	70745761	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	116931081	116931081	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110831356	110831356	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110862109	110862109	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137623349	137623349	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10096331	10096331	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238285673	238285673	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130380698	130380699	+	Frame_Shift_Ins	INS	-	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48631728	48631728	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX4I2	84701	broad.mit.edu	37	20	30232741	30232741	+	3'UTR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB1	1360	broad.mit.edu	37	3	148545963	148545963	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN2	1370	broad.mit.edu	37	3	194061747	194061747	+	3'UTR	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPZ	8532	broad.mit.edu	37	4	8608492	8608492	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBB1	1414	broad.mit.edu	37	22	27003955	27003955	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSAD	51380	broad.mit.edu	37	12	53565130	53565130	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1407713	1407713	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3165998	3165998	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1G2	1455	broad.mit.edu	37	19	1969972	1969972	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRP1	1465	broad.mit.edu	37	1	201459268	201459268	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST9L	128821	broad.mit.edu	37	20	23546602	23546602	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT45A1	541466	broad.mit.edu	37	X	134856607	134856607	+	Intron	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNB1	1499	broad.mit.edu	37	3	41266967	41266967	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11346695	11346695	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSA	5476	broad.mit.edu	37	20	44526386	44526386	+	Missense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTU2	348180	broad.mit.edu	37	16	88780888	88780888	+	Missense_Mutation	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43172512	43172512	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR7	57007	broad.mit.edu	37	2	237489664	237489664	+	Missense_Mutation	SNP	G	T	T	rs143561143	byFrequency	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf57	55086	broad.mit.edu	37	X	105905221	105905221	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYBB	1536	broad.mit.edu	37	X	37653071	37653071	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26B1	56603	broad.mit.edu	37	2	72361997	72361997	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2F1	1572	broad.mit.edu	37	19	41626230	41626230	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85969642	85969642	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAZL	1618	broad.mit.edu	37	3	16635317	16635317	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCK	1633	broad.mit.edu	37	4	71889280	71889280	+	Missense_Mutation	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCT	1638	broad.mit.edu	37	13	95121343	95121343	+	Intron	SNP	C	A	A	rs139484792	by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162724680	162724680	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEF6	50619	broad.mit.edu	37	6	35288960	35288960	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2D	79961	broad.mit.edu	37	1	111730977	111730977	+	Missense_Mutation	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND3	22898	broad.mit.edu	37	8	142154254	142154254	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX16	8449	broad.mit.edu	37	6	30633459	30633459	+	Nonsense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX9	1660	broad.mit.edu	37	1	182822417	182822417	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIABLO	56616	broad.mit.edu	37	12	122693021	122693021	+	Silent	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLEC1	9940	broad.mit.edu	37	3	38134220	38134220	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124359698	124359698	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124330219	124330219	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7630539	7630539	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7644081	7644081	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196602802	196602802	+	Missense_Mutation	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38775422	38775422	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11522839	11522839	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225729529	225729529	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117748608	117748608	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	463690	463690	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	463692	463692	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK5	55816	broad.mit.edu	37	20	53266922	53266922	+	Intron	SNP	T	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF3	8110	broad.mit.edu	37	14	73360773	73360773	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC1	1823	broad.mit.edu	37	18	28711658	28711658	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC2	1824	broad.mit.edu	37	18	28650880	28650880	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28609517	28609517	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28983407	28983407	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32336058	32336058	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP5P	574029	broad.mit.edu	37	1	228786635	228786635	+	3'UTR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F1	1869	broad.mit.edu	37	20	32267746	32267746	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECHDC2	55268	broad.mit.edu	37	1	53373495	53373496	+	Intron	INS	-	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML1	2009	broad.mit.edu	37	14	100374153	100374153	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENG	2022	broad.mit.edu	37	9	130587685	130587685	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132199649	132199649	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132529273	132529274	+	Intron	DEL	CT	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPC1	80314	broad.mit.edu	37	10	32581941	32581941	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66190033	66190033	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPN2	22905	broad.mit.edu	37	17	19216459	19216459	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212285330	212285330	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRA	2101	broad.mit.edu	37	11	64082370	64082370	+	Silent	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6305670	6305670	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169493096	169493096	+	Nonsense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139163581	139163581	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM172A	83989	broad.mit.edu	37	5	93120052	93120052	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM177B	400823	broad.mit.edu	37	1	222923143	222923143	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM194A	131831	broad.mit.edu	37	3	150398230	150398230	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A3	727830	broad.mit.edu	37	9	40701599	40701599	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75C1	441452	broad.mit.edu	37	9	90535696	90535696	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75C1	441452	broad.mit.edu	37	9	90536806	90536806	+	Missense_Mutation	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM76A	199870	broad.mit.edu	37	1	28065777	28065777	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83D	81610	broad.mit.edu	37	20	37580963	37580963	+	Silent	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10076083	10076083	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92257849	92257849	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92531124	92531124	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHO1	23149	broad.mit.edu	37	19	17895735	17895735	+	Splice_Site	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108380486	108380486	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FFAR2	2867	broad.mit.edu	37	19	35940868	35940868	+	Silent	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGA	2243	broad.mit.edu	37	4	155507713	155507713	+	Missense_Mutation	SNP	T	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128496760	128496760	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28897159	28897159	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240370521	240370521	+	Silent	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171254553	171254553	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89402588	89402588	+	Silent	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR1	2357	broad.mit.edu	37	19	52249723	52249723	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12719971	12719971	+	Intron	DEL	C	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1	79187	broad.mit.edu	37	19	4318975	4318975	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162402195	162402195	+	Missense_Mutation	SNP	C	A	A	rs143585706		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTCD	10841	broad.mit.edu	37	21	47556845	47556845	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27772783	27772783	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151814000	151814000	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL5	168391	broad.mit.edu	37	7	151711741	151711741	+	Missense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALR1	2587	broad.mit.edu	37	18	74980680	74980680	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAPT	202309	broad.mit.edu	37	5	57790735	57790735	+	Silent	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS1	2619	broad.mit.edu	37	9	89561033	89561033	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA2	57704	broad.mit.edu	37	9	35739150	35739150	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBGT1	26301	broad.mit.edu	37	9	136028893	136028893	+	3'UTR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFOD1	54438	broad.mit.edu	37	6	13364901	13364901	+	3'UTR	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179729493	179729493	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117849335	117849335	+	Missense_Mutation	SNP	G	A	A	rs147029195		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55198657	55198657	+	Frame_Shift_Del	DEL	T	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJC1	10052	broad.mit.edu	37	17	42882827	42882827	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57485035	57485035	+	Missense_Mutation	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133378257	133378257	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8DP	100132979	broad.mit.edu	37	15	22709522	22709522	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPD1L	23171	broad.mit.edu	37	3	32207498	32207498	+	3'UTR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135474497	135474497	+	Missense_Mutation	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22389449	22389449	+	Missense_Mutation	SNP	C	A	A	rs149299752		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154069950	154069950	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR179	440435	broad.mit.edu	37	17	36484370	36484370	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR97	222487	broad.mit.edu	37	16	57717902	57717902	+	Missense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHL3	57822	broad.mit.edu	37	1	24664453	24664453	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAO2	51179	broad.mit.edu	37	1	119925620	119925620	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN3	145864	broad.mit.edu	37	15	89421235	89421235	+	Frame_Shift_Del	DEL	C	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN4	10021	broad.mit.edu	37	15	73616081	73616081	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDC	3067	broad.mit.edu	37	15	50546236	50546236	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236744486	236744487	+	Intron	DNP	GG	AA	AA			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD1	25831	broad.mit.edu	37	14	31598245	31598245	+	Silent	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197183409	197183409	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM	220296	broad.mit.edu	37	11	124794933	124794933	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AH	85235	broad.mit.edu	37	6	27115000	27115000	+	Silent	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2BF	440689	broad.mit.edu	37	1	149399202	149399202	+	RNA	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPH3	3189	broad.mit.edu	37	10	70101065	70101065	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB1	3211	broad.mit.edu	37	17	46606940	46606940	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46627701	46627701	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS5	11234	broad.mit.edu	37	11	18317440	18317440	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118460328	118460328	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3A	3359	broad.mit.edu	37	11	113860510	113860510	+	3'UTR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA4	203100	broad.mit.edu	37	8	38839120	38839120	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFITM5	387733	broad.mit.edu	37	11	298710	298710	+	Nonsense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT27	11020	broad.mit.edu	37	22	37163427	37163427	+	Intron	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160482464	160482464	+	Intron	DEL	G	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF3	22806	broad.mit.edu	37	17	37992304	37992304	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104651236	104651236	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL26	55801	broad.mit.edu	37	12	68618815	68618815	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBB	3625	broad.mit.edu	37	2	121107309	121107309	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO13	9670	broad.mit.edu	37	1	44415696	44415697	+	Missense_Mutation	DNP	AG	CC	CC			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2B	3674	broad.mit.edu	37	17	42457567	42457567	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB2	3689	broad.mit.edu	37	21	46320171	46320171	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITLN1	55600	broad.mit.edu	37	1	160850238	160850238	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JARID2	3720	broad.mit.edu	37	6	15468781	15468781	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39778054	39778054	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH2	3757	broad.mit.edu	37	7	150656702	150656702	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196251343	196251343	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0831	22863	broad.mit.edu	37	14	55836410	55836410	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1407	57577	broad.mit.edu	37	3	113729527	113729527	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF16B	55614	broad.mit.edu	37	20	16316677	16316677	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200969136	200969136	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51902457	51902457	+	3'UTR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39513404	39513404	+	Silent	SNP	A	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	G	G	rs121913529		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651191	1651199	+	In_Frame_Del	DEL	GGCTGTGGA	-	-	rs144216147		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7050841	7050841	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129748788	129748788	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112440582	112440582	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133927929	133927929	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARGE	9215	broad.mit.edu	37	22	34046467	34046467	+	Silent	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAX1	54900	broad.mit.edu	37	1	203740015	203740015	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCK	3932	broad.mit.edu	37	1	32741687	32741687	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCTL	197021	broad.mit.edu	37	15	66845330	66845330	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66101910	66101910	+	Missense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9B	284194	broad.mit.edu	37	17	20358636	20358636	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI3	203190	broad.mit.edu	37	8	22012991	22012991	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX6	26468	broad.mit.edu	37	9	124967083	124967083	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55110786	55110786	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA5	353514	broad.mit.edu	37	19	54823730	54823730	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100101266	100101266	broad.mit.edu	37	19	24345764	24345764	+	RNA	SNP	G	A	A	rs61745928		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC134466	134466	broad.mit.edu	37	5	150322156	150322156	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284232	284232	broad.mit.edu	37	13	19412587	19412587	+	RNA	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC374443	374443	broad.mit.edu	37	12	9795562	9795562	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC550112	550112	broad.mit.edu	37	4	68582554	68582554	+	Intron	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728613	728613	broad.mit.edu	37	5	1615254	1615254	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22735342	22735342	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONRF3	79836	broad.mit.edu	37	X	118109472	118109472	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT2	54947	broad.mit.edu	37	16	55608521	55608521	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR5	163404	broad.mit.edu	37	1	99387651	99387651	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH4	4034	broad.mit.edu	37	7	100179643	100179643	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40400281	40400281	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG3	121227	broad.mit.edu	37	12	59266566	59266566	+	Missense_Mutation	SNP	G	T	T	rs75850843	byFrequency;by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141093302	141093302	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170031733	170031733	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC2	79442	broad.mit.edu	37	3	46586690	46586691	+	Frame_Shift_Ins	INS	-	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37B2	147172	broad.mit.edu	37	17	28961001	28961001	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33411922	33411922	+	Splice_Site	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33484615	33484615	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235845625	235845625	+	Intron	DEL	C	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD1L1	8379	broad.mit.edu	37	7	2041574	2041574	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB6	158809	broad.mit.edu	37	X	26213296	26213296	+	3'UTR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21201758	21201758	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K4	4216	broad.mit.edu	37	6	161519411	161519411	+	Missense_Mutation	SNP	G	T	T	rs144235437		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8	5599	broad.mit.edu	37	10	49632174	49632174	+	Intron	DEL	C	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165110956	165110956	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH8	220972	broad.mit.edu	37	10	45984976	45984976	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST4	375449	broad.mit.edu	37	5	66462274	66462274	+	Missense_Mutation	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART3P	442229	broad.mit.edu	37	6	66499116	66499116	+	RNA	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM6	4175	broad.mit.edu	37	2	136602111	136602111	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN3	55283	broad.mit.edu	37	1	85494886	85494886	+	Missense_Mutation	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED11	400569	broad.mit.edu	37	17	4635147	4635147	+	Silent	SNP	T	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116413289	116413289	+	Intron	SNP	T	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEFV	4210	broad.mit.edu	37	16	3304106	3304106	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS2	4212	broad.mit.edu	37	15	37184706	37184706	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEP1A	4224	broad.mit.edu	37	6	46806704	46806704	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112687087	112687087	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP5	8076	broad.mit.edu	37	12	8804135	8804135	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR516A2	574499	broad.mit.edu	37	19	54264369	54264369	+	5'Flank	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR519E	574463	broad.mit.edu	37	19	54182416	54182416	+	5'Flank	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151944986	151944986	+	Splice_Site	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89339469	89339470	+	5'UTR	DNP	CC	AG	AG			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP21	118856	broad.mit.edu	37	10	127458921	127458921	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108833179	108833179	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRS2	57380	broad.mit.edu	37	6	24418847	24418847	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A3	932	broad.mit.edu	37	11	59829847	59829847	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSGN1	343930	broad.mit.edu	37	2	17997987	17997987	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1M	4499	broad.mit.edu	37	16	56667670	56667670	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121475884	121475884	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTL5	9633	broad.mit.edu	37	11	68517945	68517945	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11227545	11227545	+	Missense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9009593	9009593	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9073672	9073672	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9089924	9089924	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUCL1	118430	broad.mit.edu	37	12	55250629	55250629	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113530298	113530298	+	Silent	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77640183	77640183	+	Missense_Mutation	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15917022	15917022	+	Intron	DEL	C	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108183760	108183760	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10401161	10401161	+	Nonsense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10429784	10429784	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10432732	10432732	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10450851	10450851	+	Silent	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123337559	123337559	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109507894	109507894	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109614011	109614011	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1A	4640	broad.mit.edu	37	12	57440555	57440555	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1B	4430	broad.mit.edu	37	2	192279183	192279183	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76872065	76872065	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72324975	72324976	+	Intron	INS	-	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101736058	101736058	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPSA	9476	broad.mit.edu	37	19	50862784	50862784	+	Silent	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEAL2	23218	broad.mit.edu	37	3	47032756	47032756	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145297798	145297798	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00171	80862	broad.mit.edu	37	6	30000448	30000448	+	Intron	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00207	388910	broad.mit.edu	37	22	44967343	44967343	+	Silent	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFB6	4712	broad.mit.edu	37	9	32570991	32570992	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21120447	21120447	+	Silent	SNP	A	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152432946	152432946	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB1	64168	broad.mit.edu	37	8	91937844	91937844	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIB	4781	broad.mit.edu	37	9	14150231	14150231	+	Frame_Shift_Del	DEL	G	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHSL2	340527	broad.mit.edu	37	X	71359234	71359234	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55489206	55489206	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120510025	120510025	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120510080	120510080	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP3	27031	broad.mit.edu	37	3	132438549	132438549	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36332708	36332708	+	Silent	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88476290	88476290	+	Silent	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUCKS1	64710	broad.mit.edu	37	1	205688812	205688812	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT12	83594	broad.mit.edu	37	5	102895772	102895772	+	Nonsense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134073346	134073346	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101818963	101818963	+	RNA	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF3L1	161753	broad.mit.edu	37	15	76019567	76019567	+	Missense_Mutation	SNP	A	C	C	rs80215855	byFrequency;by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM3	118427	broad.mit.edu	37	1	102462215	102462215	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN4	94233	broad.mit.edu	37	10	88419155	88419155	+	Missense_Mutation	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A2	341276	broad.mit.edu	37	11	6891570	6891570	+	Missense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158390486	158390486	+	Missense_Mutation	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Q1	219960	broad.mit.edu	37	11	57995776	57995776	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13A1	79290	broad.mit.edu	37	10	45799491	45799491	+	Missense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1F2P	26184	broad.mit.edu	37	16	3265781	3265781	+	Silent	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1L3	26735	broad.mit.edu	37	9	125437680	125437681	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1N2	138882	broad.mit.edu	37	9	125315400	125315400	+	5'Flank	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248685105	248685105	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248685450	248685450	+	Missense_Mutation	SNP	T	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2Z1	284383	broad.mit.edu	37	19	8841487	8841487	+	Missense_Mutation	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515921	51515921	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51V1	283111	broad.mit.edu	37	11	5221039	5221039	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52A4	390053	broad.mit.edu	37	11	5142215	5142215	+	Nonsense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5F1	338674	broad.mit.edu	37	11	55761971	55761971	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5I1	10798	broad.mit.edu	37	11	55703522	55703522	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6F1	343169	broad.mit.edu	37	1	247875220	247875220	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J3	81168	broad.mit.edu	37	11	55904334	55904334	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA3	283208	broad.mit.edu	37	11	73980583	73980583	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HB	5034	broad.mit.edu	37	17	79805012	79805012	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17552330	17552330	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110406664	110406664	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAM	5066	broad.mit.edu	37	5	102249585	102249585	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP1	142	broad.mit.edu	37	1	226558083	226558083	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATE1	160065	broad.mit.edu	37	11	125616667	125616667	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102509565	102509565	+	Missense_Mutation	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX4	5078	broad.mit.edu	37	7	127253552	127253552	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX4	5078	broad.mit.edu	37	7	127253622	127253622	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX4	80714	broad.mit.edu	37	19	19681572	19681572	+	Silent	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207804	58207804	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140724542	140724542	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140773331	140773331	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140773464	140773464	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165863760	165863760	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6B	5158	broad.mit.edu	37	4	647587	647587	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54257289	54257289	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA5	10954	broad.mit.edu	37	3	122864366	122864366	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDLIM3	27295	broad.mit.edu	37	4	186423472	186423472	+	Silent	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDYN	5173	broad.mit.edu	37	20	1961379	1961380	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGR	5241	broad.mit.edu	37	11	100920842	100920842	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF6	84295	broad.mit.edu	37	X	133548005	133548005	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDA1	22822	broad.mit.edu	37	12	76425198	76425198	+	Silent	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGV	55650	broad.mit.edu	37	1	27120800	27120800	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIH1D2	120379	broad.mit.edu	37	11	111941721	111941721	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R6	146850	broad.mit.edu	37	17	8732356	8732356	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81241089	81241089	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1	5310	broad.mit.edu	37	16	2158452	2158452	+	Missense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204316372	204316372	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43953681	43953681	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM1	9842	broad.mit.edu	37	17	43545987	43545987	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLIN4	729359	broad.mit.edu	37	19	4504673	4504673	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLLP	51090	broad.mit.edu	37	16	57290973	57290973	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA7	375775	broad.mit.edu	37	9	140400360	140400360	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79742445	79742445	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP6C	5537	broad.mit.edu	37	9	127952042	127952042	+	5'UTR	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF11	440560	broad.mit.edu	37	1	12887308	12887308	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70971110	70971110	+	Intron	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68981372	68981372	+	Splice_Site	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCE	5581	broad.mit.edu	37	2	46378443	46378443	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROCA1	147011	broad.mit.edu	37	17	27031584	27031584	+	Intron	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1554851	1554851	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRT2	112476	broad.mit.edu	37	16	29824280	29824280	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD2	84249	broad.mit.edu	37	5	139216787	139216787	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43228105	43228105	+	3'UTR	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43698283	43698283	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43411928	43411928	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43282763	43282763	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSKH2	85481	broad.mit.edu	37	8	87060875	87060875	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH1R	5745	broad.mit.edu	37	3	46940781	46940781	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128307001	128307001	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40944583	40944583	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41306789	41306789	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL2	5819	broad.mit.edu	37	19	45389062	45389062	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXK	54899	broad.mit.edu	37	3	58381436	58381436	+	Nonsense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXMP4	11264	broad.mit.edu	37	20	32295577	32295577	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158908179	158908179	+	Intron	SNP	T	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9302094	9302099	+	Intron	DEL	GCAGGG	-	-	rs150636378	by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB30	27314	broad.mit.edu	37	11	82698683	82698683	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP1	22930	broad.mit.edu	37	2	135809821	135809821	+	5'Flank	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB6B	51560	broad.mit.edu	37	3	133560365	133560365	+	Intron	SNP	T	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD18	56852	broad.mit.edu	37	3	8977689	8977689	+	Missense_Mutation	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD21	5885	broad.mit.edu	37	8	117866674	117866674	+	Missense_Mutation	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASL12	51285	broad.mit.edu	37	15	65357561	65357562	+	Frame_Shift_Ins	INS	-	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBAK	57786	broad.mit.edu	37	7	5085978	5085978	+	5'UTR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM5	10181	broad.mit.edu	37	3	50131118	50131118	+	Intron	SNP	T	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48389149	48389149	+	Frame_Shift_Del	DEL	G	-	-	rs149750989	byFrequency	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RD3	343035	broad.mit.edu	37	1	211652548	211652548	+	Missense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79314024	79314024	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43620238	43620238	+	Intron	DEL	G	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGMA	56963	broad.mit.edu	37	15	93588628	93588628	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	73006899	73006899	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS9	8787	broad.mit.edu	37	17	63157040	63157040	+	Intron	DEL	T	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOBTB2	23221	broad.mit.edu	37	8	22865272	22865272	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOU	58480	broad.mit.edu	37	1	228871753	228871753	+	Splice_Site	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105263222	105263222	+	Intron	DEL	C	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK2	55781	broad.mit.edu	37	5	96503657	96503657	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77600006	77600006	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAIN	84268	broad.mit.edu	37	17	5329713	5329713	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113314634	113314634	+	Silent	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL17	6139	broad.mit.edu	37	18	47017306	47017306	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL3	6122	broad.mit.edu	37	22	39709669	39709669	+	Silent	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP12	23223	broad.mit.edu	37	10	99125989	99125989	+	Silent	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237765331	237765331	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237777866	237777866	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237880449	237880449	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237895442	237895442	+	Nonsense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34080643	34080644	+	Frame_Shift_Ins	INS	-	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAG	6295	broad.mit.edu	37	2	234217807	234217807	+	Splice_Site	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBNO1	55206	broad.mit.edu	37	12	123794212	123794212	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78142562	78142562	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	158980354	158980354	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML2	10389	broad.mit.edu	37	X	18283678	18283678	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38891959	38891959	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38622838	38622838	+	Silent	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDF4	51150	broad.mit.edu	37	1	1154154	1154154	+	Missense_Mutation	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELO	83642	broad.mit.edu	37	22	50648819	50648819	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6B	10501	broad.mit.edu	37	19	4555447	4555447	+	Intron	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6C	10500	broad.mit.edu	37	1	151108806	151108806	+	Intron	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP1	29843	broad.mit.edu	37	12	48478938	48478938	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB8	5271	broad.mit.edu	37	18	61654208	61654208	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3A1	10291	broad.mit.edu	37	22	30742488	30742488	+	Missense_Mutation	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS15	57466	broad.mit.edu	37	21	33069074	33069074	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS17A	8227	broad.mit.edu	37	X	1712605	1712605	+	Missense_Mutation	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS8	6433	broad.mit.edu	37	12	132195832	132195832	+	Missense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL3	6457	broad.mit.edu	37	15	84245318	84245319	+	Intron	DNP	CC	AT	AT			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2B	285590	broad.mit.edu	37	5	171849422	171849422	+	Nonsense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIAH3	283514	broad.mit.edu	37	13	46358033	46358033	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232538195	232538195	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232601023	232601023	+	Nonsense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164750280	164750280	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48500060	48500060	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A2	6558	broad.mit.edu	37	5	127520534	127520534	+	Silent	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A25	387601	broad.mit.edu	37	11	62985219	62985219	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A10	65012	broad.mit.edu	37	12	58015677	58015677	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A10	65012	broad.mit.edu	37	12	58017568	58017568	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B4	84912	broad.mit.edu	37	7	133985081	133985081	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75685529	75685529	+	Missense_Mutation	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220503422	220503422	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A10P	386757	broad.mit.edu	37	16	32894031	32894031	+	5'Flank	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173545825	173545825	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A3	6550	broad.mit.edu	37	5	474946	474946	+	Intron	DEL	G	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168110897	168110897	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2103997	2103997	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1B	27127	broad.mit.edu	37	22	45750185	45750185	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51621445	51621445	+	Splice_Site	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX7	51375	broad.mit.edu	37	1	99204076	99204076	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX7	83595	broad.mit.edu	37	8	10587835	10587835	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX8	30812	broad.mit.edu	37	16	1033796	1033796	+	Missense_Mutation	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARC	6678	broad.mit.edu	37	5	151043215	151043215	+	Intron	SNP	A	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA6	54558	broad.mit.edu	37	1	48865286	48865286	+	Nonsense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA9	83890	broad.mit.edu	37	5	94999696	94999696	+	Silent	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG21	51324	broad.mit.edu	37	15	65261577	65261577	+	Intron	SNP	T	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228856186	228856186	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK2	6691	broad.mit.edu	37	4	57677865	57677865	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM3	222183	broad.mit.edu	37	7	75894699	75894699	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST14	6768	broad.mit.edu	37	11	130068228	130068228	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52556665	52556665	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104096985	104096985	+	Silent	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK39	27347	broad.mit.edu	37	2	168994769	168994769	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3A	3703	broad.mit.edu	37	11	125481361	125481361	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX17	55014	broad.mit.edu	37	9	102722207	102722207	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70536413	70536413	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT2A1	6822	broad.mit.edu	37	19	48374858	48374858	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT2A1	6822	broad.mit.edu	37	19	48382293	48382293	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN5	140732	broad.mit.edu	37	20	31573082	31573082	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD4	55061	broad.mit.edu	37	1	223402684	223402684	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD4	55061	broad.mit.edu	37	1	223536632	223536632	+	Nonsense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152640091	152640091	+	Silent	SNP	C	T	T	rs144376043	byFrequency	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R38	5726	broad.mit.edu	37	7	141673320	141673320	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TATDN3	128387	broad.mit.edu	37	1	212977679	212977679	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D13	54662	broad.mit.edu	37	9	131566421	131566421	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCE	6905	broad.mit.edu	37	1	235605137	235605137	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD3	81550	broad.mit.edu	37	13	61102923	61102923	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TERF1	7013	broad.mit.edu	37	8	73921473	73921473	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133497484	133497484	+	3'UTR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM4	7047	broad.mit.edu	37	3	44931948	44931948	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THNSL2	55258	broad.mit.edu	37	2	88472892	88472892	+	Missense_Mutation	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD1	55901	broad.mit.edu	37	13	52972283	52972283	+	Silent	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TH	7054	broad.mit.edu	37	11	2189211	2189211	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156353276	156353276	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLX1	3195	broad.mit.edu	37	10	102891257	102891257	+	5'UTR	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCC3	57458	broad.mit.edu	37	12	94972080	94972080	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74360174	74360174	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM38B	55151	broad.mit.edu	37	9	108536211	108536211	+	Nonsense_Mutation	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM40	55287	broad.mit.edu	37	3	12779560	12779560	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMF1	7110	broad.mit.edu	37	3	69078952	69078952	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMIE	259236	broad.mit.edu	37	3	46747539	46747539	+	Intron	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIK	23043	broad.mit.edu	37	3	170784270	170784270	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIK	23043	broad.mit.edu	37	3	170857124	170857124	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNPO2	30000	broad.mit.edu	37	19	12821473	12821473	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175335276	175335276	+	Splice_Site	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR1AIP1	26092	broad.mit.edu	37	1	179873207	179873207	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72388308	72388308	+	Missense_Mutation	SNP	T	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPP1	1200	broad.mit.edu	37	11	6637760	6637760	+	Intron	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20056589	20056589	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRABD	80305	broad.mit.edu	37	22	50636319	50636319	+	Nonsense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAP1	10131	broad.mit.edu	37	16	3735910	3735910	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHR	7201	broad.mit.edu	37	8	110100469	110100469	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM10	10107	broad.mit.edu	37	6	30125110	30125110	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM36	55521	broad.mit.edu	37	5	114513595	114513595	+	Intron	DEL	A	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM3	10612	broad.mit.edu	37	11	6478596	6478596	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM46	80128	broad.mit.edu	37	1	155149759	155149759	+	Missense_Mutation	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC1	7220	broad.mit.edu	37	3	142503761	142503761	+	Silent	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM7	54822	broad.mit.edu	37	15	50868037	50868037	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV3	162514	broad.mit.edu	37	17	3446925	3446925	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA14	95681	broad.mit.edu	37	7	130039875	130039875	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN8	7103	broad.mit.edu	37	12	71533330	71533330	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSK1B	83942	broad.mit.edu	37	5	112769471	112769471	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179592221	179592221	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179653993	179653993	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB4Q	56604	broad.mit.edu	37	4	190905529	190905529	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB4	10382	broad.mit.edu	37	19	6501382	6501382	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC16	57544	broad.mit.edu	37	14	53003522	53003522	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17531201	17531201	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215940153	215940153	+	Intron	SNP	A	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6	9098	broad.mit.edu	37	17	5043224	5043224	+	Intron	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	8992176	8992176	+	Intron	DEL	T	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	8992194	8992194	+	Intron	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144782618	144782618	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	111440166	111440166	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42528030	42528030	+	IGR	DEL	G	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	9765485	9765485	+	IGR	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	122485271	122485271	+	IGR	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55071651	55071651	+	IGR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56457831	56457831	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59666342	59666342	+	IGR	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90016491	90016491	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	2851595	2851595	+	IGR	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	45465896	45465896	+	IGR	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111591897	111591897	+	IGR	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111642510	111642510	+	IGR	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19529150	19529150	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19538034	19538034	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19931719	19931719	+	IGR	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59104435	59104435	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61211500	61211500	+	IGR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20097342	20097342	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22032356	22032356	+	IGR	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	29142510	29142510	+	IGR	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39855950	39855950	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52622825	52622825	+	IGR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20434230	20434230	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84722370	84722370	+	IGR	SNP	C	A	A	rs140678053	by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32077798	32077798	+	IGR	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32374953	32374953	+	IGR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32375031	32375031	+	IGR	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	15737047	15737047	+	IGR	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25289320	25289320	+	IGR	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	16091842	16091842	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55207687	55207687	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111391580	111391580	+	IGR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159990428	159990428	+	IGR	SNP	T	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	46247201	46247201	+	IGR	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11114646	11114646	+	IGR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14917321	14917321	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16346083	16346083	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17395704	17395704	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	32772972	32772972	+	IGR	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	49609729	49609729	+	IGR	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107314012	107314012	+	IGR	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	183936514	183936514	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194994292	194994292	+	IGR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52798129	52798129	+	IGR	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91893800	91893800	+	IGR	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166783841	166783841	+	IGR	DEL	G	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31496748	31496748	+	IGR	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88935509	88935509	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90306482	90306483	+	IGR	DNP	AA	TT	TT			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	104495223	104495223	+	IGR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117519946	117519946	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13339934	13339934	+	IGR	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190395244	190395244	+	IGR	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190395687	190395687	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3937159	3937159	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	81000754	81000754	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9024851	9024851	+	IGR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9386215	9386215	+	IGR	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20304587	20304587	+	IGR	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75374771	75374771	+	IGR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75375210	75375210	+	IGR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	34158286	34158286	+	IGR	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	55804584	55804584	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145280944	145280944	+	IGR	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	27502328	27502328	+	IGR	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56230725	56230725	+	IGR	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63033651	63033651	+	IGR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	53358337	53358337	+	IGR	SNP	A	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27608714	27608714	+	IGR	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90432591	90432591	+	IGR	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	98908554	98908554	+	IGR	SNP	A	G	G	rs1810713		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	143923141	143923141	+	IGR	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	27537230	27537230	+	IGR	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65276352	65276353	+	IGR	DNP	GG	CT	CT			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	99411767	99411767	+	IGR	SNP	G	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28583107	28583107	+	IGR	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28774284	28774284	+	IGR	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL2	57216	broad.mit.edu	37	1	160393962	160393962	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82833850	82833850	+	Silent	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPR1	7433	broad.mit.edu	37	3	42569456	42569456	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM2A	222008	broad.mit.edu	37	7	54636701	54636701	+	Splice_Site	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA2	340706	broad.mit.edu	37	10	116008476	116008476	+	Missense_Mutation	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61053874	61053874	+	Nonsense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF3	10810	broad.mit.edu	37	13	27151321	27151321	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR38	401551	broad.mit.edu	37	9	127619755	127619755	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241907844	241907844	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241907869	241907869	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54398639	54398639	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR91	29062	broad.mit.edu	37	7	134881195	134881195	+	Intron	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168103076	168103076	+	Nonsense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168104598	168104598	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB20	26137	broad.mit.edu	37	3	114070511	114070511	+	Silent	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H14	79882	broad.mit.edu	37	14	89034479	89034479	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207175047	207175047	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145274906	145274906	+	Silent	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZER1	10444	broad.mit.edu	37	9	131512987	131512987	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766816	77766816	+	Silent	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77768318	77768318	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE28	57732	broad.mit.edu	37	4	2273100	2273100	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM4	9202	broad.mit.edu	37	1	35847280	35847280	+	Missense_Mutation	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF138	7697	broad.mit.edu	37	7	64255019	64255019	+	Intron	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF229	7772	broad.mit.edu	37	19	44932853	44932853	+	Silent	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF266	10781	broad.mit.edu	37	19	9525173	9525173	+	Missense_Mutation	SNP	T	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF470	388566	broad.mit.edu	37	19	57081645	57081645	+	Intron	SNP	C	T	T	rs117078524	by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF493	284443	broad.mit.edu	37	19	21606023	21606023	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF512B	57473	broad.mit.edu	37	20	62593643	62593643	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF560	147741	broad.mit.edu	37	19	9578057	9578057	+	Silent	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	53257	53257	+	5'UTR	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF79	7633	broad.mit.edu	37	9	130207312	130207313	+	Frame_Shift_Del	DEL	TA	-	-			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF823	55552	broad.mit.edu	37	19	11833620	11833620	+	Silent	SNP	C	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57767353	57767353	+	Missense_Mutation	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57767489	57767489	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23543380	23543380	+	Nonsense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58563859	58563859	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3968180	3968180	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55065055	55065055	+	Intron	SNP	A	C	C			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31301119	31301119	+	Intron	SNP	A	G	G			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101489992	101489992	+	5'Flank	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20490591	20490591	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23605391	23605391	+	5'Flank	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	28900661	28900661	+	RNA	SNP	A	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	21854828	21854828	+	Missense_Mutation	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32265080	32265080	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90007696	90007697	+	Intron	DNP	CG	AC	AC	rs116209509	by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	10214580	10214580	+	5'Flank	SNP	C	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142028330	142028330	+	Intron	SNP	G	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142111292	142111292	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142124458	142124458	+	Intron	SNP	G	T	T			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143510153	143510153	+	Silent	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86568066	86568067	+	5'Flank	DNP	GG	TC	TC			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84676721	84676721	+	Intron	SNP	C	A	A			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
