Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
MASP2	10747	broad.mit.edu	36	1	11020432	11020432	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	11020432	11020432	MASP2	1	C	C	G	26
FBXO42	54455	broad.mit.edu	36	1	16450213	16450213	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	16450213	16450213	FBXO42	1	C	C	A	28
AKR7A3	22977	broad.mit.edu	36	1	19483139	19483139	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	19483139	19483139	AKR7A3	1	C	C	A	27
COL16A1	1307	broad.mit.edu	36	1	31890972	31890972	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31890972	31890972	COL16A1	1	C	C	A	26
SPOCD1	90853	broad.mit.edu	36	1	32053345	32053345	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	32053345	32053345	SPOCD1	1	G	G	T	41
SSBP3	23648	broad.mit.edu	36	1	54467080	54467080	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	54467080	54467080	SSBP3	1	A	A	T	8
INADL	10207	broad.mit.edu	36	1	62004545	62004545	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	62004545	62004545	INADL	1	C	C	T	21
FLG2	388698	broad.mit.edu	36	1	150593692	150593692	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	150593692	150593692	FLG2	1	C	C	A	30
ATP8B2	57198	broad.mit.edu	36	1	152582580	152582580	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	152582580	152582580	ATP8B2	1	T	T	C	54
ARHGEF2	9181	broad.mit.edu	36	1	154188380	154188380	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	154188380	154188380	ARHGEF2	1	T	T	C	52
NHLH1	4807	broad.mit.edu	36	1	158607168	158607168	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	158607168	158607168	NHLH1	1	T	T	C	51
SCYL3	57147	broad.mit.edu	36	1	168091670	168091670	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	168091670	168091670	SCYL3	1	C	C	G	21
PLD5	200150	broad.mit.edu	36	1	240319968	240319968	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	240319968	240319968	PLD5	1	T	T	G	55
OR2W3	343171	broad.mit.edu	36	1	246126017	246126017	+	Missense_Mutation	SNP	G	G	A	rs12083024	byFrequency;byHapMap	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	246126017	246126017	OR2W3	1	G	G	A	48
PIK3AP1	118788	broad.mit.edu	36	10	98370188	98370188	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	98370188	98370188	PIK3AP1	10	C	C	T	22
AHNAK	79026	broad.mit.edu	36	11	62050498	62050498	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	62050498	62050498	AHNAK	11	G	G	A	47
MRPL49	740	broad.mit.edu	36	11	64649815	64649815	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	64649815	64649815	MRPL49	11	G	G	T	47
C2CD3	26005	broad.mit.edu	36	11	73511754	73511754	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73511754	73511754	C2CD3	11	A	A	G	6
FAT3	120114	broad.mit.edu	36	11	92216961	92216961	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	92216961	92216961	FAT3	11	A	A	T	3
TMPRSS4	56649	broad.mit.edu	36	11	117483781	117483781	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	117483781	117483781	TMPRSS4	11	C	C	T	31
TECTA	7007	broad.mit.edu	36	11	120536216	120536216	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	120536216	120536216	TECTA	11	G	G	T	36
SLC38A4	55089	broad.mit.edu	36	12	45456983	45456983	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	45456983	45456983	SLC38A4	12	G	G	A	42
MLL2	8085	broad.mit.edu	36	12	47723920	47723920	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Nonsense_Mutation	SNP	47723920	47723920	MLL2	12	G	G	A	46
SCN8A	6334	broad.mit.edu	36	12	50487199	50487199	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	50487199	50487199	SCN8A	12	A	A	T	2
ACVR1B	91	broad.mit.edu	36	12	50664218	50664218	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Splice_Site_SNP	SNP	50664218	50664218	ACVR1B	12	G	G	C	44
NCKAP1L	3071	broad.mit.edu	36	12	53197611	53197611	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	53197611	53197611	NCKAP1L	12	T	T	C	56
NACA	4666	broad.mit.edu	36	12	55398181	55398181	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55398181	55398181	NACA	12	G	G	A	41
XPOT	11260	broad.mit.edu	36	12	63100528	63100528	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	63100528	63100528	XPOT	12	G	G	C	48
GOLGA3	2802	broad.mit.edu	36	12	131875697	131875697	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	131875697	131875697	GOLGA3	12	T	T	C	60
ELF1	1997	broad.mit.edu	36	13	40415221	40415221	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	40415221	40415221	ELF1	13	G	G	C	41
OXGR1	27199	broad.mit.edu	36	13	96437140	96437141	+	Missense_Mutation	DNP	GC	GC	AA	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	96437140	96437141	OXGR1	13	GC	GC	AA	34
EDDM3B	64184	broad.mit.edu	36	14	20308225	20308225	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	20308225	20308225	EDDM3B	14	A	A	G	5
SLC39A2	29986	broad.mit.edu	36	14	20539252	20539252	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	20539252	20539252	SLC39A2	14	C	C	T	29
MLH3	27030	broad.mit.edu	36	14	74584640	74584640	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74584640	74584640	MLH3	14	A	A	G	9
CACNA1H	8912	broad.mit.edu	36	16	1190530	1190530	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	1190530	1190530	CACNA1H	16	C	C	T	29
FBXO39	162517	broad.mit.edu	36	17	6624415	6624415	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6624415	6624415	FBXO39	17	C	C	A	18
SLC47A2	146802	broad.mit.edu	36	17	19550635	19550635	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	19550635	19550635	SLC47A2	17	G	G	T	42
FAM134C	162427	broad.mit.edu	36	17	37990759	37990759	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37990759	37990759	FAM134C	17	C	C	T	30
WNK4	65266	broad.mit.edu	36	17	38202086	38202086	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	38202086	38202086	WNK4	17	C	C	G	25
HDAC5	10014	broad.mit.edu	36	17	39520443	39520443	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	39520443	39520443	HDAC5	17	G	G	C	48
COIL	8161	broad.mit.edu	36	17	52374485	52374485	+	Splice_Site_SNP	SNP	T	T	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	52374485	52374485	COIL	17	T	T	A	55
LAMA1	284217	broad.mit.edu	36	18	7023075	7023075	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7023075	7023075	LAMA1	18	C	C	A	30
LAMA3	3909	broad.mit.edu	36	18	19692763	19692763	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	19692763	19692763	LAMA3	18	G	G	A	48
MALT1	10892	broad.mit.edu	36	18	54565850	54565850	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	54565850	54565850	MALT1	18	C	C	T	30
INSR	3643	broad.mit.edu	36	19	7068323	7068323	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	7068323	7068323	INSR	19	A	A	G	1
GADD45GIP1	90480	broad.mit.edu	36	19	12926202	12926202	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	12926202	12926202	GADD45GIP1	19	G	G	C	41
EPS15L1	58513	broad.mit.edu	36	19	16389758	16389758	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	16389758	16389758	EPS15L1	19	C	C	A	18
CPAMD8	27151	broad.mit.edu	36	19	16952496	16952496	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			C	A	C	C	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	Broad	Missense_Mutation	SNP	16952496	16952496	CPAMD8	19	C	C	A	18
ZNF99	7652	broad.mit.edu	36	19	22733086	22733086	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	22733086	22733086	ZNF99	19	C	C	A	28
RYR1	6261	broad.mit.edu	36	19	43707977	43707977	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43707977	43707977	RYR1	19	G	G	A	38
APOB	338	broad.mit.edu	36	2	21079652	21079652	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	21079652	21079652	APOB	2	A	A	T	8
MTIF2	4528	broad.mit.edu	36	2	55327035	55327035	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55327035	55327035	MTIF2	2	C	C	A	32
EIF2AK3	9451	broad.mit.edu	36	2	88671555	88671555	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	88671555	88671555	EIF2AK3	2	C	C	G	32
GCC2	9648	broad.mit.edu	36	2	108454151	108454151	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	108454151	108454151	GCC2	2	T	T	G	57
IL1F9	56300	broad.mit.edu	36	2	113458926	113458926	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	113458926	113458926	IL1F9	2	C	C	A	23
MBD5	55777	broad.mit.edu	36	2	148963614	148963614	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	148963614	148963614	MBD5	2	G	G	T	45
PIKFYVE	200576	broad.mit.edu	36	2	208908841	208908841	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Nonsense_Mutation	SNP	208908841	208908841	PIKFYVE	2	A	A	T	1
SPHKAP	80309	broad.mit.edu	36	2	228589653	228589653	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	228589653	228589653	SPHKAP	2	C	C	T	29
DTD1	92675	broad.mit.edu	36	20	18524815	18524815	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	18524815	18524815	DTD1	20	G	G	A	34
ZNF341	84905	broad.mit.edu	36	20	31835302	31835302	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31835302	31835302	ZNF341	20	A	A	G	16
RBM12	10137	broad.mit.edu	36	20	33705596	33705596	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33705596	33705596	RBM12	20	C	C	T	32
HNF4A	3172	broad.mit.edu	36	20	42490438	42490438	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	42490438	42490438	HNF4A	20	G	G	A	45
PREX1	57580	broad.mit.edu	36	20	46758287	46758287	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	46758287	46758287	PREX1	20	C	C	A	25
RSPH1	89765	broad.mit.edu	36	21	42766027	42766027	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	42766027	42766027	RSPH1	21	T	T	C	56
TRIOBP	11078	broad.mit.edu	36	22	36450946	36450946	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	36450946	36450946	TRIOBP	22	G	G	A	41
GRM7	2917	broad.mit.edu	36	3	7431806	7431806	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7431806	7431806	GRM7	3	C	C	T	19
FGD5	152273	broad.mit.edu	36	3	14837164	14837164	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	14837164	14837164	FGD5	3	G	G	C	43
MYH15	22989	broad.mit.edu	36	3	109595630	109595630	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	109595630	109595630	MYH15	3	C	C	T	28
PARP15	165631	broad.mit.edu	36	3	123836714	123836714	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	123836714	123836714	PARP15	3	G	G	A	36
PARP14	54625	broad.mit.edu	36	3	123905422	123905422	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	123905422	123905422	PARP14	3	A	A	T	7
RPN1	6184	broad.mit.edu	36	3	129827101	129827101	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	129827101	129827101	RPN1	3	A	A	G	12
KIAA0232	9778	broad.mit.edu	36	4	6913893	6913893	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6913893	6913893	KIAA0232	4	G	G	T	34
HERC5	51191	broad.mit.edu	36	4	89644476	89644476	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	89644476	89644476	HERC5	4	C	C	T	31
MAML3	55534	broad.mit.edu	36	4	141030778	141030778	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	141030778	141030778	MAML3	4	G	G	C	47
PLCXD3	345557	broad.mit.edu	36	5	41417998	41417998	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	41417998	41417998	PLCXD3	5	C	C	T	21
NSA2	10412	broad.mit.edu	36	5	74102274	74102274	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	74102274	74102274	NSA2	5	T	T	C	61
POLK	51426	broad.mit.edu	36	5	74900959	74900959	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	74900959	74900959	POLK	5	T	T	C	52
GABRA6	2559	broad.mit.edu	36	5	161049887	161049887	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	161049887	161049887	GABRA6	5	A	A	G	7
ODZ2	57451	broad.mit.edu	36	5	167607395	167607395	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	167607395	167607395	ODZ2	5	C	C	G	17
PANK3	79646	broad.mit.edu	36	5	167923585	167923585	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	167923585	167923585	PANK3	5	C	C	G	24
MSH5	4439	broad.mit.edu	36	6	31835702	31835702	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	31835702	31835702	MSH5	6	A	A	G	3
ITPR3	3710	broad.mit.edu	36	6	33756419	33756419	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	33756419	33756419	ITPR3	6	A	A	G	2
HTR1E	3354	broad.mit.edu	36	6	87781917	87781917	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	87781917	87781917	HTR1E	6	C	C	A	18
PDE10A	10846	broad.mit.edu	36	6	165747019	165747019	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			A	C	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	165747019	165747019	PDE10A	6	A	A	C	8
INTS1	26173	broad.mit.edu	36	7	1506409	1506409	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	1506409	1506409	INTS1	7	C	C	A	29
PSMA2	5683	broad.mit.edu	36	7	42930912	42930912	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	42930912	42930912	PSMA2	7	C	C	T	25
URGCP	55665	broad.mit.edu	36	7	43884411	43884411	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	43884411	43884411	URGCP	7	C	C	T	30
RABGEF1	27342	broad.mit.edu	36	7	65907680	65907680	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	65907680	65907680	RABGEF1	7	T	T	C	51
RP1L1	94137	broad.mit.edu	36	8	10503593	10503593	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	10503593	10503593	RP1L1	8	C	C	T	21
IDO2	169355	broad.mit.edu	36	8	39925913	39925913	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	39925913	39925913	IDO2	8	G	G	T	36
PXDNL	137902	broad.mit.edu	36	8	52483360	52483360	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52483360	52483360	PXDNL	8	A	A	G	11
ASAP1	50807	broad.mit.edu	36	8	131197069	131197069	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	131197069	131197069	ASAP1	8	T	T	C	50
PHF2	5253	broad.mit.edu	36	9	95456662	95456662	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	95456662	95456662	PHF2	9	C	C	T	22
PHF8	23133	broad.mit.edu	36	X	54028157	54028157	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	54028157	54028157	PHF8	23	C	C	G	30
TRO	7216	broad.mit.edu	36	X	54966870	54966870	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	54966870	54966870	TRO	23	C	C	A	32
BEX2	84707	broad.mit.edu	36	X	102451537	102451537	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	102451537	102451537	BEX2	23	C	C	T	19
DUSP9	1852	broad.mit.edu	36	X	152568794	152568794	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	152568794	152568794	DUSP9	23	A	A	T	2
TP53	7157	broad.mit.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T	rs11540652	byHapMap	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Missense_Mutation	SNP	7518263	7518263	TP53	17	C	C	T	23
SRRM2	23524	broad.mit.edu	36	16	2753699	2753700	+	Frame_Shift_Ins	INS	-	TG	-	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Ins	INS	2753699	2753700	SRRM2	16	-	TG	-	20
PTPRZ1	5803	broad.mit.edu	36	7	121466124	121466124	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-24-0979-01	TCGA-24-0979-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	121466124	121466124	PTPRZ1	7	G	-	G	47
