Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
FBXO44	93611	broad.mit.edu	36	1	11640949	11640949	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	11640949	11640949	FBXO44	1	G	G	A	37
VPS13D	55187	broad.mit.edu	36	1	12255739	12255739	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	12255739	12255739	VPS13D	1	T	T	A	63
CACHD1	57685	broad.mit.edu	36	1	64919545	64919545	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	64919545	64919545	CACHD1	1	G	G	A	48
OR10J3	441911	broad.mit.edu	36	1	157551009	157551009	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	157551009	157551009	OR10J3	1	C	C	T	23
TAF3	83860	broad.mit.edu	36	10	8047596	8047596	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	8047596	8047596	TAF3	10	A	A	G	3
STAMBPL1	57559	broad.mit.edu	36	10	90666466	90666466	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	90666466	90666466	STAMBPL1	10	C	C	A	27
LOXL4	84171	broad.mit.edu	36	10	100001319	100001319	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	100001319	100001319	LOXL4	10	G	G	A	33
LZTS2	84445	broad.mit.edu	36	10	102753906	102753906	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	102753906	102753906	LZTS2	10	T	T	A	51
EBF3	253738	broad.mit.edu	36	10	131647189	131647189	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	131647189	131647189	EBF3	10	T	T	C	55
OR51B2	79345	broad.mit.edu	36	11	5301308	5301308	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5301308	5301308	OR51B2	11	C	C	T	17
LOC143678	143678	broad.mit.edu	36	11	45884996	45884996	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	45884996	45884996	LOC143678	11	C	C	A	21
OR5AP2	338675	broad.mit.edu	36	11	56165952	56165952	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56165952	56165952	OR5AP2	11	G	G	C	45
MMP3	4314	broad.mit.edu	36	11	102216153	102216153	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	102216153	102216153	MMP3	11	C	C	G	23
STAB2	55576	broad.mit.edu	36	12	102658568	102658568	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	102658568	102658568	STAB2	12	C	C	A	26
C12orf76	400073	broad.mit.edu	36	12	108964569	108964569	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	108964569	108964569	C12orf76	12	C	C	T	19
POP5	51367	broad.mit.edu	36	12	119503411	119503411	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	119503411	119503411	POP5	12	G	G	A	43
WDR66	144406	broad.mit.edu	36	12	120854166	120854166	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	120854166	120854166	WDR66	12	C	C	A	18
MLXIP	22877	broad.mit.edu	36	12	121178416	121178416	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	121178416	121178416	MLXIP	12	T	T	C	56
CYB5D2	124936	broad.mit.edu	36	17	4007036	4007036	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	4007036	4007036	CYB5D2	17	C	C	A	17
MYH2	4620	broad.mit.edu	36	17	10370665	10370665	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	10370665	10370665	MYH2	17	C	C	T	27
C17orf76	388341	broad.mit.edu	36	17	16288043	16288043	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	16288043	16288043	C17orf76	17	C	C	G	19
UTP6	55813	broad.mit.edu	36	17	27226508	27226508	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27226508	27226508	UTP6	17	G	G	C	34
USP36	57602	broad.mit.edu	36	17	74311393	74311393	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74311393	74311393	USP36	17	T	T	C	58
KEAP1	9817	broad.mit.edu	36	19	10471143	10471143	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	10471143	10471143	KEAP1	19	G	G	C	36
SMARCA4	6597	broad.mit.edu	36	19	10999568	10999568	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	10999568	10999568	SMARCA4	19	C	C	T	29
NOTCH3	4854	broad.mit.edu	36	19	15139118	15139118	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	15139118	15139118	NOTCH3	19	C	C	A	29
CPAMD8	27151	broad.mit.edu	36	19	16886585	16886585	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	16886585	16886585	CPAMD8	19	C	C	T	27
KCNN4	3783	broad.mit.edu	36	19	48976721	48976721	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	48976721	48976721	KCNN4	19	C	C	T	32
NCR1	9437	broad.mit.edu	36	19	60112559	60112559	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	60112559	60112559	NCR1	19	G	G	A	39
BRSK1	84446	broad.mit.edu	36	19	60506867	60506867	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	60506867	60506867	BRSK1	19	G	G	T	41
SESTD1	91404	broad.mit.edu	36	2	179716695	179716695	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	179716695	179716695	SESTD1	2	C	C	T	29
MAP2	4133	broad.mit.edu	36	2	210283183	210283183	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	210283183	210283183	MAP2	2	G	G	C	41
SLC16A14	151473	broad.mit.edu	36	2	230632123	230632123	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	230632123	230632123	SLC16A14	2	C	C	A	32
BPIL3	128859	broad.mit.edu	36	20	31090413	31090413	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31090413	31090413	BPIL3	20	C	C	T	28
MATN4	8785	broad.mit.edu	36	20	43366381	43366381	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43366381	43366381	MATN4	20	G	G	A	38
KRTAP27-1	643812	broad.mit.edu	36	21	30631406	30631406	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30631406	30631406	KRTAP27-1	21	A	A	G	9
TFF1	7031	broad.mit.edu	36	21	42659601	42659601	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	42659601	42659601	TFF1	21	C	C	G	31
MORC2	22880	broad.mit.edu	36	22	29660166	29660166	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29660166	29660166	MORC2	22	G	G	A	37
IQSEC1	9922	broad.mit.edu	36	3	12938738	12938738	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	12938738	12938738	IQSEC1	3	C	C	T	19
SLC4A7	9497	broad.mit.edu	36	3	27447846	27447846	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27447846	27447846	SLC4A7	3	G	G	T	46
SLC9A10	285335	broad.mit.edu	36	3	113480376	113480376	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	113480376	113480376	SLC9A10	3	C	C	T	27
RTP1	132112	broad.mit.edu	36	3	188400419	188400419	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	188400419	188400419	RTP1	3	C	C	T	27
CPZ	8532	broad.mit.edu	36	4	8656714	8656714	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	8656714	8656714	CPZ	4	G	G	A	38
ADH1B	125	broad.mit.edu	36	4	100454248	100454248	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	100454248	100454248	ADH1B	4	G	G	A	33
ODZ2	57451	broad.mit.edu	36	5	167450237	167450237	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	167450237	167450237	ODZ2	5	C	C	A	24
SLC17A2	10246	broad.mit.edu	36	6	26024944	26024944	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26024944	26024944	SLC17A2	6	A	A	C	15
USP45	85015	broad.mit.edu	36	6	100000796	100000796	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	100000796	100000796	USP45	6	C	C	A	21
SERINC1	57515	broad.mit.edu	36	6	122819461	122819461	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	122819461	122819461	SERINC1	6	C	C	G	17
PHACTR2	9749	broad.mit.edu	36	6	144136913	144136913	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	144136913	144136913	PHACTR2	6	G	G	A	39
TTLL2	83887	broad.mit.edu	36	6	167674346	167674346	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	167674346	167674346	TTLL2	6	C	C	T	19
FAM200A	221786	broad.mit.edu	36	7	98983233	98983233	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	98983233	98983233	FAM200A	7	C	C	T	31
SRRT	51593	broad.mit.edu	36	7	100320536	100320536	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	100320536	100320536	SRRT	7	C	C	T	27
MET	4233	broad.mit.edu	36	7	116127088	116127088	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	116127088	116127088	MET	7	A	A	T	14
DOLK	22845	broad.mit.edu	36	9	130748299	130748299	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	130748299	130748299	DOLK	9	C	C	A	18
FUBP3	8939	broad.mit.edu	36	9	132501298	132501298	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	132501298	132501298	FUBP3	9	C	C	T	19
ZXDA	7789	broad.mit.edu	36	X	57952621	57952621	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	57952621	57952621	ZXDA	23	T	T	G	59
SMARCA1	6594	broad.mit.edu	36	X	128473515	128473515	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	128473515	128473515	SMARCA1	23	G	G	A	40
ATP11C	286410	broad.mit.edu	36	X	138693059	138693059	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	138693059	138693059	ATP11C	23	G	G	C	37
SLITRK4	139065	broad.mit.edu	36	X	142544093	142544093	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	142544093	142544093	SLITRK4	23	G	G	T	34
GABRE	2564	broad.mit.edu	36	X	150874650	150874650	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	150874650	150874650	GABRE	23	C	C	T	19
TP53	7157	broad.mit.edu	36	17	7519000	7519000	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01	TCGA-24-1474-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Nonsense_Mutation	SNP	7519000	7519000	TP53	17	G	G	A	45
