Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
CA6	765	broad.mit.edu	36	1	8941642	8941642	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	8941642	8941642	CA6	1	C	C	T	31
SERINC2	347735	broad.mit.edu	36	1	31674871	31674871	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	31674871	31674871	SERINC2	1	C	C	T	19
DLGAP3	58512	broad.mit.edu	36	1	35143560	35143560	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	35143560	35143560	DLGAP3	1	G	G	A	44
STK40	83931	broad.mit.edu	36	1	36586901	36586901	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	36586901	36586901	STK40	1	G	G	A	39
ASPM	259266	broad.mit.edu	36	1	195337700	195337700	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	195337700	195337700	ASPM	1	A	A	G	4
ANKRD26	22852	broad.mit.edu	36	10	27366150	27366150	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27366150	27366150	ANKRD26	10	C	C	T	29
CHST15	51363	broad.mit.edu	36	10	125759819	125759819	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	125759819	125759819	CHST15	10	A	A	G	1
KCNJ11	3767	broad.mit.edu	36	11	17366174	17366174	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17366174	17366174	KCNJ11	11	A	A	C	7
OR8J1	219477	broad.mit.edu	36	11	55884914	55884914	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55884914	55884914	OR8J1	11	A	A	T	1
OR5A1	219982	broad.mit.edu	36	11	58967926	58967926	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	58967926	58967926	OR5A1	11	C	C	T	23
ATP11A	23250	broad.mit.edu	36	13	112533842	112533842	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	112533842	112533842	ATP11A	13	G	G	A	40
AP1G2	8906	broad.mit.edu	36	14	23105182	23105182	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	23105182	23105182	AP1G2	14	G	G	A	39
ARID4A	5926	broad.mit.edu	36	14	57901165	57901165	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	57901165	57901165	ARID4A	14	A	A	G	4
TP53	7157	broad.mit.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7518990	7518990	TP53	17	A	A	G	12
JAK3	3718	broad.mit.edu	36	19	17811423	17811423	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17811423	17811423	JAK3	19	G	G	A	48
ZNF181	339318	broad.mit.edu	36	19	39923917	39923917	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39923917	39923917	ZNF181	19	C	C	G	22
GEN1	348654	broad.mit.edu	36	2	17826623	17826623	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17826623	17826623	GEN1	2	G	G	C	44
C2orf29	55571	broad.mit.edu	36	2	101240751	101240751	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	101240751	101240751	C2orf29	2	G	G	C	39
KCNJ4	3761	broad.mit.edu	36	22	37153490	37153490	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	37153490	37153490	KCNJ4	22	G	G	A	46
SCN10A	6336	broad.mit.edu	36	3	38745228	38745228	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	38745228	38745228	SCN10A	3	G	G	A	39
GABRA4	2557	broad.mit.edu	36	4	46673881	46673881	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	46673881	46673881	GABRA4	4	C	C	G	21
BBS12	166379	broad.mit.edu	36	4	123884049	123884049	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	123884049	123884049	BBS12	4	A	A	G	15
TKTL2	84076	broad.mit.edu	36	4	164614169	164614169	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	164614169	164614169	TKTL2	4	C	C	T	31
COL12A1	1303	broad.mit.edu	36	6	75958775	75958775	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	75958775	75958775	COL12A1	6	T	T	C	52
TRAF3IP2	10758	broad.mit.edu	36	6	112008224	112008224	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	112008224	112008224	TRAF3IP2	6	C	C	T	28
HOXA7	3204	broad.mit.edu	36	7	27161209	27161209	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27161209	27161209	HOXA7	7	C	C	A	32
KIAA1539	80256	broad.mit.edu	36	9	35097610	35097610	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	35097610	35097610	KIAA1539	9	T	T	C	52
NR4A3	8013	broad.mit.edu	36	9	101634829	101634829	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	101634829	101634829	NR4A3	9	C	C	A	25
DBH	1621	broad.mit.edu	36	9	135502794	135502794	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	135502794	135502794	DBH	9	A	A	C	1
CASK	8573	broad.mit.edu	36	X	41275294	41275294	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	41275294	41275294	CASK	23	G	G	A	42
ABCB7	22	broad.mit.edu	36	X	74292690	74292690	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74292690	74292690	ABCB7	23	G	G	A	42
F9	2158	broad.mit.edu	36	X	138450950	138450950	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	138450950	138450950	F9	23	G	G	C	35
NBPF10	100132406	broad.mit.edu	36	1	144038903	144038907	+	Frame_Shift_Del	DEL	TGAAT	-	TGAAT	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	144038903	144038907	NBPF10	1	TGAAT	-	TGAAT	55
IWS1	55677	broad.mit.edu	36	2	127978935	127978937	+	In_Frame_Del	DEL	CTT	-	CTT	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	127978935	127978937	IWS1	2	CTT	-	CTT	24
COG5	10466	broad.mit.edu	36	7	106991606	106991606	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-25-2396-01	TCGA-25-2396-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	106991606	106991606	COG5	7	G	-	G	34
