Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
CTBS	1486	broad.mit.edu	36	1	84808932	84808932	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	84808932	84808932	CTBS	1	T	T	C	63
SPTBN2	6712	broad.mit.edu	36	11	66223550	66223550	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	66223550	66223550	SPTBN2	11	G	G	A	40
CLPB	81570	broad.mit.edu	36	11	71823138	71823138	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	71823138	71823138	CLPB	11	T	T	C	64
PUS1	80324	broad.mit.edu	36	12	130980501	130980501	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	130980501	130980501	PUS1	12	C	C	T	27
MYO16	23026	broad.mit.edu	36	13	108270690	108270691	+	Missense_Mutation	DNP	AT	AT	TA	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	108270690	108270691	MYO16	13	AT	AT	TA	4
CGRRF1	10668	broad.mit.edu	36	14	54074630	54074630	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	54074630	54074630	CGRRF1	14	T	T	C	54
NDN	4692	broad.mit.edu	36	15	21483337	21483337	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	21483337	21483337	NDN	15	G	G	A	42
VPS13C	54832	broad.mit.edu	36	15	59988545	59988545	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	59988545	59988545	VPS13C	15	C	C	T	24
PRC1	9055	broad.mit.edu	36	15	89325231	89325231	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	89325231	89325231	PRC1	15	C	C	G	29
SYNM	23336	broad.mit.edu	36	15	97490428	97490428	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	97490428	97490428	SYNM	15	C	C	G	19
GSPT1	2935	broad.mit.edu	36	16	11888276	11888276	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	11888276	11888276	GSPT1	16	C	C	T	24
ZNF821	55565	broad.mit.edu	36	16	70451902	70451902	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	70451902	70451902	ZNF821	16	G	G	T	47
TRPV3	162514	broad.mit.edu	36	17	3404841	3404841	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	3404841	3404841	TRPV3	17	G	G	C	43
MED11	400569	broad.mit.edu	36	17	4581930	4581930	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	4581930	4581930	MED11	17	C	C	A	29
TP53	7157	broad.mit.edu	36	17	7518293	7518293	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7518293	7518293	TP53	17	C	C	A	17
ETV4	2118	broad.mit.edu	36	17	38962065	38962065	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	38962065	38962065	ETV4	17	C	C	G	27
CA4	762	broad.mit.edu	36	17	55591421	55591421	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55591421	55591421	CA4	17	A	A	G	11
TMC8	147138	broad.mit.edu	36	17	73646067	73646067	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73646067	73646067	TMC8	17	C	C	T	23
C18orf45	85019	broad.mit.edu	36	18	19132002	19132002	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	19132002	19132002	C18orf45	18	G	G	T	35
C18orf34	374864	broad.mit.edu	36	18	29182907	29182907	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29182907	29182907	C18orf34	18	T	T	G	56
ZNF91	7644	broad.mit.edu	36	19	23336986	23336986	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	23336986	23336986	ZNF91	19	C	C	T	17
SHKBP1	92799	broad.mit.edu	36	19	45786835	45786835	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	45786835	45786835	SHKBP1	19	C	C	T	19
RSPH6A	81492	broad.mit.edu	36	19	51009836	51009837	+	Missense_Mutation	DNP	CC	CC	AA	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	51009836	51009837	RSPH6A	19	CC	CC	AA	22
NLRP12	91662	broad.mit.edu	36	19	59004776	59004776	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	59004776	59004776	NLRP12	19	G	G	C	41
LILRA5	353514	broad.mit.edu	36	19	59514739	59514739	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	59514739	59514739	LILRA5	19	T	T	C	62
MAP4K3	8491	broad.mit.edu	36	2	39517539	39517539	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39517539	39517539	MAP4K3	2	T	T	C	63
TTL	150465	broad.mit.edu	36	2	112968226	112968226	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	112968226	112968226	TTL	2	G	G	T	46
SCN3A	6328	broad.mit.edu	36	2	165711590	165711590	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	165711590	165711590	SCN3A	2	A	A	G	12
C2orf66	401027	broad.mit.edu	36	2	197380523	197380523	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	197380523	197380523	C2orf66	2	G	G	A	41
SNED1	25992	broad.mit.edu	36	2	241670404	241670404	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	241670404	241670404	SNED1	2	C	C	T	30
SLC4A11	83959	broad.mit.edu	36	20	3158863	3158863	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3158863	3158863	SLC4A11	20	C	C	G	17
PROKR2	128674	broad.mit.edu	36	20	5230783	5230783	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5230783	5230783	PROKR2	20	C	C	T	19
MYH7B	57644	broad.mit.edu	36	20	33050327	33050327	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33050327	33050327	MYH7B	20	A	A	C	11
TRPM2	7226	broad.mit.edu	36	21	44635613	44635613	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44635613	44635613	TRPM2	21	G	G	T	46
ALDH1L1	10840	broad.mit.edu	36	3	127355060	127355060	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	127355060	127355060	ALDH1L1	3	C	C	G	32
NPHP3	27031	broad.mit.edu	36	3	133903036	133903036	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	133903036	133903036	NPHP3	3	G	G	C	46
ABCC5	10057	broad.mit.edu	36	3	185121873	185121873	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	185121873	185121873	ABCC5	3	A	A	T	1
FGFR3	2261	broad.mit.edu	36	4	1777374	1777374	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	1777374	1777374	FGFR3	4	G	G	T	46
CCDC158	339965	broad.mit.edu	36	4	77497599	77497599	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	77497599	77497599	CCDC158	4	C	C	G	32
C4orf21	55345	broad.mit.edu	36	4	113758564	113758564	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	113758564	113758564	C4orf21	4	G	G	C	45
ADCY2	108	broad.mit.edu	36	5	7879918	7879918	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	7879918	7879918	ADCY2	5	C	C	T	18
CTNND2	1501	broad.mit.edu	36	5	11289923	11289923	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	11289923	11289923	CTNND2	5	C	C	G	30
FBN2	2201	broad.mit.edu	36	5	127738326	127738326	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	127738326	127738326	FBN2	5	C	C	T	32
CTNNA1	1495	broad.mit.edu	36	5	138145513	138145513	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	138145513	138145513	CTNNA1	5	A	A	C	4
HIST1H2BJ	8970	broad.mit.edu	36	6	27208431	27208431	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	27208431	27208431	HIST1H2BJ	6	G	G	A	40
ABCC10	89845	broad.mit.edu	36	6	43514388	43514388	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	43514388	43514388	ABCC10	6	G	G	A	47
EPDR1	54749	broad.mit.edu	36	7	37926943	37926943	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	37926943	37926943	EPDR1	7	A	A	C	6
NPC1L1	29881	broad.mit.edu	36	7	44519640	44519640	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44519640	44519640	NPC1L1	7	G	G	C	34
ELN	2006	broad.mit.edu	36	7	73093497	73093497	+	Missense_Mutation	SNP	C	C	A	rs41350445	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73093497	73093497	ELN	7	C	C	A	27
DGKI	9162	broad.mit.edu	36	7	136922464	136922464	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	136922464	136922464	DGKI	7	C	C	A	25
TRPS1	7227	broad.mit.edu	36	8	116701055	116701055	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	116701055	116701055	TRPS1	8	G	G	A	43
BAI1	575	broad.mit.edu	36	8	143566730	143566730	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	143566730	143566730	BAI1	8	T	T	C	54
USP51	158880	broad.mit.edu	36	X	55531044	55531044	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55531044	55531044	USP51	23	T	T	C	54
UTP14A	10813	broad.mit.edu	36	X	128891264	128891264	+	Nonstop_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01	TCGA-31-1959-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonstop_Mutation	SNP	128891264	128891264	UTP14A	23	G	G	C	45
