Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AARS2	57505	broad.mit.edu	37	6	44279286	44279286	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA3	21	broad.mit.edu	37	16	2376381	2376381	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66918397	66918397	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20782645	20782645	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB6	10058	broad.mit.edu	37	2	220077768	220077768	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABP1	26	broad.mit.edu	37	7	150553664	150553664	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109617933	109617933	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAT1	38	broad.mit.edu	37	11	108016773	108016773	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL1	2180	broad.mit.edu	37	4	185705088	185705088	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL9	284382	broad.mit.edu	37	19	8808680	8808680	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236925911	236925911	+	Missense_Mutation	SNP	G	T	T	rs142646143		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM17	6868	broad.mit.edu	37	2	9666321	9666321	+	Silent	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21P1	145241	broad.mit.edu	37	14	70713766	70713767	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM22	53616	broad.mit.edu	37	7	87792285	87792285	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM28	10863	broad.mit.edu	37	8	24207290	24207290	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39627142	39627142	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39666959	39666959	+	Silent	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106135589	106135589	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33546268	33546268	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1599057	1599057	+	Intron	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167815391	167815391	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45699470	45699470	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7804815	7804815	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADNP2	22850	broad.mit.edu	37	18	77894782	77894782	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADSL	158	broad.mit.edu	37	22	40759087	40759087	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFM	173	broad.mit.edu	37	4	74349697	74349697	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP2	116986	broad.mit.edu	37	12	58131021	58131021	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86801146	86801146	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86823106	86823106	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGRN	375790	broad.mit.edu	37	1	957682	957682	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247063503	247063503	+	Silent	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105421237	105421253	+	Intron	DEL	AGCCAGCAGGGTAGTGA	-	-	rs66540327		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1L	55057	broad.mit.edu	37	1	26663852	26663852	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX15	246	broad.mit.edu	37	17	4539076	4539076	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK3	57538	broad.mit.edu	37	15	85400144	85400144	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR8	79800	broad.mit.edu	37	2	203790001	203790002	+	Intron	DNP	GG	TT	TT			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMBP	259	broad.mit.edu	37	9	116838847	116838847	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD2	271	broad.mit.edu	37	1	110173098	110173098	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT2	285	broad.mit.edu	37	8	6389879	6389879	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	74019917	74019917	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD1	27063	broad.mit.edu	37	10	92680175	92680175	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37447428	37447428	+	Intron	DEL	C	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99898388	99898388	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101430689	101430689	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101433709	101433709	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101433907	101433907	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101462895	101462895	+	Intron	DEL	G	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA6	309	broad.mit.edu	37	5	150503933	150503933	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP11A	9824	broad.mit.edu	37	15	32917842	32917842	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP24	83478	broad.mit.edu	37	4	86898879	86898879	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP26	23092	broad.mit.edu	37	5	142437235	142437235	+	Silent	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32563253	32563253	+	Silent	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11316665	11316665	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP9	64333	broad.mit.edu	37	12	57871282	57871282	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF10	9639	broad.mit.edu	37	8	1808322	1808322	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSG	22901	broad.mit.edu	37	17	66352735	66352735	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSK	153642	broad.mit.edu	37	5	94903741	94903741	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31323007	31323007	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG9B	285973	broad.mit.edu	37	7	150714102	150714102	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATL2	64225	broad.mit.edu	37	2	38542443	38542443	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113510353	113510353	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10419887	10419887	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPBD4	89978	broad.mit.edu	37	15	35746951	35746951	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXIN2	8313	broad.mit.edu	37	17	63554793	63554793	+	5'UTR	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZI1	22994	broad.mit.edu	37	17	79166471	79166471	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT1	2583	broad.mit.edu	37	12	58020640	58020640	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ1B	9031	broad.mit.edu	37	7	72880868	72880868	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS10	79738	broad.mit.edu	37	12	76739847	76739847	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70759928	70759928	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC8	112401	broad.mit.edu	37	19	53792981	53792981	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLK	640	broad.mit.edu	37	8	11407582	11407582	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLM	641	broad.mit.edu	37	15	91341467	91341468	+	Frame_Shift_Ins	INS	-	TT	TT			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36937430	36937430	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRF1	2972	broad.mit.edu	37	14	105685542	105685542	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRMS1L	84312	broad.mit.edu	37	14	36336971	36336971	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK2	9024	broad.mit.edu	37	11	1472754	1472754	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTAF1	9044	broad.mit.edu	37	10	93683798	93683804	+	5'UTR	DEL	AGGTCGC	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56403172	56403172	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZW2	28969	broad.mit.edu	37	7	16745717	16745717	+	3'UTR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf105	414152	broad.mit.edu	37	10	73472617	73472617	+	3'UTR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf82	143379	broad.mit.edu	37	10	118425379	118425379	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf90	118611	broad.mit.edu	37	10	128118366	128118366	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33640201	33640201	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf16	121793	broad.mit.edu	37	13	111973266	111973266	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf55	256646	broad.mit.edu	37	15	34648156	34648156	+	Silent	SNP	C	A	A	rs141659118	byFrequency;by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf60	284021	broad.mit.edu	37	17	62461564	62461564	+	5'Flank	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30806766	30806766	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf35	374872	broad.mit.edu	37	19	2280966	2280966	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf124	83932	broad.mit.edu	37	1	231474384	231474384	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf87	127795	broad.mit.edu	37	1	60463539	60463539	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf92	149499	broad.mit.edu	37	1	156902558	156902558	+	Intron	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf9	51430	broad.mit.edu	37	1	172558560	172558560	+	Silent	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf96	140680	broad.mit.edu	37	20	257517	257517	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3P1	388503	broad.mit.edu	37	19	10169059	10169059	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3	718	broad.mit.edu	37	19	6692982	6692982	+	Missense_Mutation	SNP	C	G	G	rs121909585		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf30	152405	broad.mit.edu	37	3	118865982	118865982	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf63	23272	broad.mit.edu	37	3	56680580	56680580	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4BPA	722	broad.mit.edu	37	1	207287595	207287595	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf40	401137	broad.mit.edu	37	4	71024063	71024063	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf51	646603	broad.mit.edu	37	4	146617753	146617753	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf36	285600	broad.mit.edu	37	5	93856111	93856111	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf106	64771	broad.mit.edu	37	6	34622570	34622570	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40234473	40234473	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40900032	40900032	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf27	221927	broad.mit.edu	37	7	2593887	2593887	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf31	136895	broad.mit.edu	37	7	25176554	25176554	+	Intron	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf24	84688	broad.mit.edu	37	9	34379748	34379748	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140809010	140809010	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	141010276	141010276	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2704937	2704937	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181680017	181680017	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG8	59283	broad.mit.edu	37	19	54481548	54481548	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG8	59283	broad.mit.edu	37	19	54481550	54481550	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86114787	86114787	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27440873	27440873	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO2	10241	broad.mit.edu	37	17	46930139	46930139	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44323760	44323760	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMLG	819	broad.mit.edu	37	5	134074270	134074270	+	5'UTR	SNP	A	G	G	rs111282208		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44141031	44141031	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110492304	110492304	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN7	23473	broad.mit.edu	37	3	15260164	15260164	+	Intron	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPS2	84698	broad.mit.edu	37	12	75784885	75784885	+	5'Flank	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2959040	2959040	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD14	79092	broad.mit.edu	37	17	78162253	78162253	+	Silent	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASD1	64921	broad.mit.edu	37	7	94181710	94181710	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASKIN2	57513	broad.mit.edu	37	17	73498744	73498744	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	122002503	122002503	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1A	54862	broad.mit.edu	37	19	14034501	14034501	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBP2	1238	broad.mit.edu	37	3	42931198	42931198	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC109B	55013	broad.mit.edu	37	4	110595086	110595086	+	Intron	SNP	G	A	A	rs10488887	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC33	80125	broad.mit.edu	37	15	74623141	74623141	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119960726	119960726	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR9	10803	broad.mit.edu	37	3	45943393	45943393	+	3'UTR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD151	977	broad.mit.edu	37	11	837379	837379	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300LB	124599	broad.mit.edu	37	17	72522108	72522108	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80302011	80302011	+	Intron	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD8B	926	broad.mit.edu	37	2	87073827	87073827	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14C	168448	broad.mit.edu	37	7	48964317	48964317	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC20B	166979	broad.mit.edu	37	5	54429307	54429307	+	Silent	SNP	A	G	G	rs149160251		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25A	993	broad.mit.edu	37	3	48215895	48215895	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65022079	65022079	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21817018	21817018	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21817022	21817022	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH3	1001	broad.mit.edu	37	16	68714851	68714851	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDR1	1038	broad.mit.edu	37	X	139866270	139866270	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDRT15P	94158	broad.mit.edu	37	17	13927944	13927944	+	RNA	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM1	634	broad.mit.edu	37	19	43026327	43026327	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM8	1088	broad.mit.edu	37	19	43093466	43093466	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48699962	48699962	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP55	55165	broad.mit.edu	37	10	95276915	95276916	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6172549	6172549	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHMP4C	92421	broad.mit.edu	37	8	82670559	82670559	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHP2	63928	broad.mit.edu	37	16	23766505	23766505	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRD	8646	broad.mit.edu	37	3	184104849	184104849	+	Silent	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRFAM7A	89832	broad.mit.edu	37	15	30663125	30663125	+	Intron	DEL	C	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136623175	136623175	+	Intron	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA4	1137	broad.mit.edu	37	20	61982414	61982414	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB2	1141	broad.mit.edu	37	1	154541836	154541836	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB4	1143	broad.mit.edu	37	15	78921765	78921765	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB4	1143	broad.mit.edu	37	15	78921903	78921903	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC12A	160364	broad.mit.edu	37	12	10132026	10132026	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC17A	388512	broad.mit.edu	37	19	14703196	14703196	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4M	10332	broad.mit.edu	37	19	7830189	7830189	+	Intron	SNP	G	C	C	rs117140487	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4M	10332	broad.mit.edu	37	19	7830196	7830196	+	Intron	DEL	C	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS2	134829	broad.mit.edu	37	6	123319371	123319371	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87660204	87660204	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87671611	87671611	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNIH3	149111	broad.mit.edu	37	1	224927216	224927216	+	3'UTR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205033534	205033534	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74570185	74570185	+	Intron	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP1	8506	broad.mit.edu	37	17	40849561	40849564	+	Intron	DEL	CTCT	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBLL1	22837	broad.mit.edu	37	2	165556062	165556062	+	Intron	SNP	T	C	C	rs139984226	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103364643	103364644	+	Intron	DNP	CA	AT	AT			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33139750	33139750	+	Intron	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33142405	33142405	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75823503	75823503	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32163665	32163665	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A1	1277	broad.mit.edu	37	17	48275260	48275260	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109767253	109767253	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	116956463	116956463	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A3BP	10087	broad.mit.edu	37	5	74670321	74670321	+	Intron	DEL	A	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A1	1291	broad.mit.edu	37	21	47412102	47412102	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48629266	48629266	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD2	51122	broad.mit.edu	37	3	149459216	149459216	+	3'UTR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD8	54951	broad.mit.edu	37	4	47453593	47453593	+	3'UTR	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB3	22849	broad.mit.edu	37	10	93840946	93840946	+	Intron	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211437942	211437942	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRABP1	1381	broad.mit.edu	37	15	78635905	78635905	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197169702	197169702	+	5'Flank	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRCT1	54544	broad.mit.edu	37	1	152487955	152487955	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3900576	3900576	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRNN	49860	broad.mit.edu	37	1	152382438	152382438	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAM	56253	broad.mit.edu	37	11	122741925	122741925	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF1R	1436	broad.mit.edu	37	5	149449494	149449494	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2830668	2830668	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST9	128822	broad.mit.edu	37	20	23584184	23584184	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE1	64693	broad.mit.edu	37	18	19997171	19997171	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTH	1491	broad.mit.edu	37	1	70899568	70899568	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80782968	80782968	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSL2	1515	broad.mit.edu	37	9	99799918	99799918	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL1	8454	broad.mit.edu	37	7	148481087	148481087	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL2	8453	broad.mit.edu	37	10	35320562	35320562	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWC25	54883	broad.mit.edu	37	17	36965933	36965933	+	Intron	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A4	1576	broad.mit.edu	37	7	99370101	99370101	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F11	57834	broad.mit.edu	37	19	16025237	16025237	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F2	8529	broad.mit.edu	37	19	16000218	16000218	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP7A1	1581	broad.mit.edu	37	8	59405181	59405181	+	Intron	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM1	23002	broad.mit.edu	37	14	59793591	59793591	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57476975	57476975	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72440100	72440100	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	86068012	86068012	+	Intron	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAGLB	221955	broad.mit.edu	37	7	6470059	6470059	+	Intron	DEL	T	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK3	1613	broad.mit.edu	37	19	3961336	3961336	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155176940	155176940	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR1	780	broad.mit.edu	37	6	30860208	30860208	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX52	11056	broad.mit.edu	37	17	35993383	35993383	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169294999	169294999	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137154236	137154236	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHFR	1719	broad.mit.edu	37	5	79950397	79950397	+	5'UTR	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX58	79132	broad.mit.edu	37	17	40256702	40256702	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX9	1660	broad.mit.edu	37	1	182850644	182850644	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47969892	47969892	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	107956632	107956632	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP5	9787	broad.mit.edu	37	14	55621589	55621589	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20944578	20944578	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13793973	13793973	+	Intron	SNP	T	A	A	rs147234148	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH6	1768	broad.mit.edu	37	2	85004618	85004618	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB3	414061	broad.mit.edu	37	2	234652186	234652186	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC3	5611	broad.mit.edu	37	13	96438214	96438214	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	129152931	129152931	+	Splice_Site	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK5	55816	broad.mit.edu	37	20	53205280	53205280	+	Missense_Mutation	SNP	G	T	T	rs148783714	byFrequency	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA4	55211	broad.mit.edu	37	3	109050530	109050530	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105405183	105405183	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105463529	105463529	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41559769	41559769	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	42080837	42080837	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNLRB2	83657	broad.mit.edu	37	16	80577307	80577307	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F1	1869	broad.mit.edu	37	20	32265061	32265061	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD1	79631	broad.mit.edu	37	15	82512058	82512058	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110925518	110925518	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGLN3	112399	broad.mit.edu	37	14	34419700	34419701	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHMT1	79813	broad.mit.edu	37	9	140729017	140729017	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4B	1975	broad.mit.edu	37	12	53400346	53400346	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELK3	2004	broad.mit.edu	37	12	96653545	96653545	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELN	2006	broad.mit.edu	37	7	73455693	73455693	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL4	6785	broad.mit.edu	37	6	80631256	80631256	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELP4	26610	broad.mit.edu	37	11	31531495	31531495	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79358799	79358799	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML5	161436	broad.mit.edu	37	14	89087598	89087599	+	Frame_Shift_Ins	INS	-	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR2	30817	broad.mit.edu	37	19	14866492	14866492	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120594882	120594882	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120613783	120613783	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142567015	142567015	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15	2060	broad.mit.edu	37	1	51937460	51937460	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT1	2131	broad.mit.edu	37	8	119123195	119123195	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61083938	61083938	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175530279	175530280	+	Nonsense_Mutation	DNP	GG	AT	AT			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190B	54462	broad.mit.edu	37	10	86215678	86215678	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B2	170067	broad.mit.edu	37	X	24329200	24329200	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177250489	177250490	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067753	190067754	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71F1	84691	broad.mit.edu	37	7	128358754	128358754	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANK1	92565	broad.mit.edu	37	10	127697497	127697497	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127627259	127627259	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127728739	127728739	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127800414	127800414	+	Intron	DEL	C	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER1A	2205	broad.mit.edu	37	1	159272552	159272553	+	Intron	DNP	GG	TT	TT			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40368402	40368402	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157660199	157660199	+	Missense_Mutation	SNP	G	C	C	rs141302640		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FECH	2235	broad.mit.edu	37	18	55233598	55233598	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125052358	125052358	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9L	360132	broad.mit.edu	37	7	55750582	55750582	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9L	360132	broad.mit.edu	37	7	55752873	55752873	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ36000	284124	broad.mit.edu	37	17	21904715	21904715	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142477633	142477635	+	In_Frame_Del	DEL	GCT	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84603941	84603941	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58120280	58120280	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN1	342184	broad.mit.edu	37	15	33357125	33357125	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171250010	171250010	+	Missense_Mutation	SNP	G	C	C	rs141233517		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO5	2330	broad.mit.edu	37	1	146672938	146672938	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO5	2330	broad.mit.edu	37	1	146680354	146680354	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14748736	14748736	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13702491	13702491	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD7	90167	broad.mit.edu	37	X	131233313	131233313	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD2	143162	broad.mit.edu	37	10	49393811	49393811	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32698990	32698990	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1L	83856	broad.mit.edu	37	9	108285051	108285051	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD5	53827	broad.mit.edu	37	19	35660493	35660493	+	Missense_Mutation	SNP	G	T	T	rs141471950		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYCO1	79443	broad.mit.edu	37	3	46008032	46008032	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17446952	17446952	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT2	2590	broad.mit.edu	37	1	230378930	230378930	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GARNL3	84253	broad.mit.edu	37	9	130119519	130119519	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA2	2624	broad.mit.edu	37	3	128200779	128200779	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153789863	153789863	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCLC	2729	broad.mit.edu	37	6	53378980	53378980	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120578934	120578934	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDAP2	54834	broad.mit.edu	37	1	118461089	118461089	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA4	2701	broad.mit.edu	37	1	35260118	35260118	+	Silent	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42006017	42006017	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP2R	9340	broad.mit.edu	37	17	9760757	9760757	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLIM4	27333	broad.mit.edu	37	3	167761353	167761353	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135439865	135439865	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR124	25960	broad.mit.edu	37	8	37696652	37696652	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154145355	154145355	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR15	2838	broad.mit.edu	37	3	98251438	98251438	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR44	11251	broad.mit.edu	37	11	60620811	60620811	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR50	9248	broad.mit.edu	37	X	150348572	150348572	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1C	54762	broad.mit.edu	37	3	113638907	113638907	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11737793	11737793	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREM2	64388	broad.mit.edu	37	1	240656560	240656560	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	31061956	31061956	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM3	2913	broad.mit.edu	37	7	86468581	86468581	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2IRD2P1	401375	broad.mit.edu	37	7	72662619	72662619	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2IRD2	84163	broad.mit.edu	37	7	74227165	74227165	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMH	2999	broad.mit.edu	37	14	25077022	25077022	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS2	3037	broad.mit.edu	37	8	122641407	122641407	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45267021	45267021	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18869084	18869085	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236746143	236746143	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236746281	236746281	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR4	399671	broad.mit.edu	37	14	73964837	73964837	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD3	79654	broad.mit.edu	37	1	45476310	45476310	+	Silent	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43592036	43592036	+	Intron	DEL	G	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93778921	93778921	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65408432	65408432	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28457617	28457617	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHATL	57467	broad.mit.edu	37	3	42738903	42738903	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHAT	55733	broad.mit.edu	37	1	210637891	210637891	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AG	8969	broad.mit.edu	37	6	27100922	27100922	+	Silent	SNP	C	G	G	rs143036813		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-F	3134	broad.mit.edu	37	6	29691944	29691944	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLX	3142	broad.mit.edu	37	1	221055381	221055381	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HP1BP3	50809	broad.mit.edu	37	1	21072173	21072173	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH3	11255	broad.mit.edu	37	20	60791983	60791983	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152192787	152192787	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSFYL1	27437	broad.mit.edu	37	22	17308477	17308477	+	RNA	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA14	51182	broad.mit.edu	37	10	14891690	14891690	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22159808	22159808	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70993478	70993478	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF5	64376	broad.mit.edu	37	10	124753980	124753980	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB2	3595	broad.mit.edu	37	1	67795269	67795269	+	Splice_Site	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB2	3595	broad.mit.edu	37	1	67861719	67861719	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAP	3556	broad.mit.edu	37	3	190327006	190327006	+	Intron	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35876564	35876564	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5D	3635	broad.mit.edu	37	2	234103862	234103863	+	Intron	INS	-	A	A	rs151215689	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS6	26512	broad.mit.edu	37	13	51957877	51957877	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK3	11213	broad.mit.edu	37	12	66628923	66628923	+	Intron	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK3	11213	broad.mit.edu	37	12	66628927	66628927	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL1	3670	broad.mit.edu	37	5	50689298	50689298	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182363664	182363664	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31336931	31336931	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31391695	31391695	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB4	3691	broad.mit.edu	37	17	73746102	73746102	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB5	3693	broad.mit.edu	37	3	124485040	124485040	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB8	3696	broad.mit.edu	37	7	20441336	20441336	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH3	3699	broad.mit.edu	37	3	52833113	52833113	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVNS1ABP	10625	broad.mit.edu	37	1	185267224	185267241	+	In_Frame_Del	DEL	TTCCACCGTATTCAGAAA	-	-	rs74908023	byFrequency;by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK2	3717	broad.mit.edu	37	9	5081748	5081748	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6042384	6042384	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD6	89890	broad.mit.edu	37	13	41706687	41706687	+	5'UTR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156009595	156009595	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73849959	73849959	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63416870	63416870	+	Silent	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88658611	88658611	+	Silent	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB4	27345	broad.mit.edu	37	12	70760880	70760880	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62076856	62076857	+	Intron	INS	-	CCCCAAAGGG	CCCCAAAGGG	rs138698925	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36721883	36721883	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDELR3	11015	broad.mit.edu	37	22	38878654	38878654	+	3'UTR	DEL	T	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5A	5927	broad.mit.edu	37	12	493005	493005	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142651458	142651458	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHK	3795	broad.mit.edu	37	2	27317349	27317349	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0100	9703	broad.mit.edu	37	17	26942855	26942855	+	Intron	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0247	9766	broad.mit.edu	37	14	70125490	70125490	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0406	9675	broad.mit.edu	37	20	36611948	36611948	+	Silent	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43908192	43908192	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0947	23379	broad.mit.edu	37	5	5463461	5463461	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1274	27143	broad.mit.edu	37	10	72298908	72298908	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	93962756	93962756	+	Splice_Site	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94041586	94041586	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1841	84542	broad.mit.edu	37	2	61315481	61315481	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF15	56992	broad.mit.edu	37	3	44839184	44839184	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF18B	146909	broad.mit.edu	37	17	43005458	43005458	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72345451	72345452	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241661247	241661247	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10327434	10327434	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10364334	10364334	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55275191	55275191	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF15	28999	broad.mit.edu	37	3	126070627	126070627	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC7A	127707	broad.mit.edu	37	1	18809215	18809215	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC9	126823	broad.mit.edu	37	1	161069916	161069916	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL30	377007	broad.mit.edu	37	2	239056488	239056488	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK14	43847	broad.mit.edu	37	19	51582093	51582093	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK2	3817	broad.mit.edu	37	19	51379647	51379647	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT33B	3884	broad.mit.edu	37	17	39521771	39521771	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT35	3886	broad.mit.edu	37	17	39633999	39633999	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT5	3852	broad.mit.edu	37	12	52910540	52910540	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT72	140807	broad.mit.edu	37	12	52981431	52981431	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT85	3891	broad.mit.edu	37	12	52755390	52755390	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP1-1	81851	broad.mit.edu	37	17	39197549	39197549	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-3	337960	broad.mit.edu	37	21	31797799	31797799	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60902396	60902396	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60906119	60906119	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB2	3913	broad.mit.edu	37	3	49160160	49160160	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB2	3913	broad.mit.edu	37	3	49161963	49161963	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMP2	3920	broad.mit.edu	37	X	119565408	119565408	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1	23367	broad.mit.edu	37	5	154191175	154191175	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBXCOR1	390598	broad.mit.edu	37	15	68119430	68119430	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD3	143458	broad.mit.edu	37	11	36120153	36120153	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71978710	71978710	+	RNA	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202287785	202287785	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL5	222662	broad.mit.edu	37	6	35773816	35773816	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPE	3991	broad.mit.edu	37	19	42930740	42930740	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45635009	45635009	+	Intron	SNP	C	A	A	rs76586725	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP5L	91355	broad.mit.edu	37	22	25755958	25755958	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16A	55604	broad.mit.edu	37	6	25452335	25452335	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70488727	70488727	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM12	124801	broad.mit.edu	37	17	42114658	42114658	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LST-3TM12	338821	broad.mit.edu	37	12	21196342	21196342	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP4	8425	broad.mit.edu	37	19	41123169	41123169	+	Intron	DEL	G	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUC7L	55692	broad.mit.edu	37	16	239065	239065	+	3'UTR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166960797	166960797	+	Intron	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA4	4103	broad.mit.edu	37	X	151092768	151092768	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA5	4104	broad.mit.edu	37	X	151283365	151283365	+	3'UTR	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANEA	79694	broad.mit.edu	37	6	96034364	96034364	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K14	9020	broad.mit.edu	37	17	43347745	43347746	+	Intron	INS	-	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K1	4214	broad.mit.edu	37	5	56177585	56177585	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBOAT1	154141	broad.mit.edu	37	6	20113163	20113163	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC5R	4161	broad.mit.edu	37	18	13825793	13825793	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCCC2	64087	broad.mit.edu	37	5	70931014	70931014	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47670109	47670109	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13	9969	broad.mit.edu	37	17	60028436	60028436	+	Intron	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13	9969	broad.mit.edu	37	17	60060325	60060325	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD10	10227	broad.mit.edu	37	4	2934882	2934882	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD9	84804	broad.mit.edu	37	2	103353306	103353306	+	5'UTR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT4C	25834	broad.mit.edu	37	12	86373286	86373286	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR409	574413	broad.mit.edu	37	14	101531618	101531618	+	5'Flank	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129902310	129902310	+	Silent	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLC1	23209	broad.mit.edu	37	22	50512860	50512860	+	Intron	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLC1	23209	broad.mit.edu	37	22	50515229	50515229	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLH3	27030	broad.mit.edu	37	14	75515150	75515150	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL4	9757	broad.mit.edu	37	19	36228979	36228979	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL5	55904	broad.mit.edu	37	7	104702637	104702637	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLST8	64223	broad.mit.edu	37	16	2258703	2258703	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP13	4322	broad.mit.edu	37	11	102816471	102816471	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOBKL2C	148932	broad.mit.edu	37	1	47075248	47075248	+	3'UTR	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108822893	108822893	+	Intron	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPO	4353	broad.mit.edu	37	17	56356600	56356600	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC2	9902	broad.mit.edu	37	17	60767430	60767430	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS35	60488	broad.mit.edu	37	12	27907986	27907986	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRB3	253827	broad.mit.edu	37	12	65813542	65813542	+	Intron	SNP	G	T	T	rs142168683	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1P9	11223	broad.mit.edu	37	1	17085884	17085884	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151330762	151330762	+	Intron	DEL	C	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR15	22909	broad.mit.edu	37	15	31222754	31222754	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11290882	11290882	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS1	57509	broad.mit.edu	37	8	17507277	17507277	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9056608	9056608	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100685193	100685193	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1102476	1102476	+	Silent	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1155305	1155305	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC1	4604	broad.mit.edu	37	12	102060674	102060674	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC3	4607	broad.mit.edu	37	11	47364216	47364216	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23894913	23894913	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23901795	23901795	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL10	93408	broad.mit.edu	37	7	101267537	101267539	+	In_Frame_Del	DEL	CTC	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL3	4634	broad.mit.edu	37	3	46904660	46904660	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128390968	128390968	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOZ2	51778	broad.mit.edu	37	4	120107204	120107205	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP2	55728	broad.mit.edu	37	4	40127837	40127837	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT2	10	broad.mit.edu	37	8	18257533	18257533	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20070465	20070465	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEAL2	23218	broad.mit.edu	37	3	47045903	47045903	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145330171	145330171	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145362115	145362115	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAN	1463	broad.mit.edu	37	19	19338712	19338712	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124885199	124885199	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00182	100302692	broad.mit.edu	37	X	73326679	73326679	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA9	4704	broad.mit.edu	37	12	4791405	4791405	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK2	4751	broad.mit.edu	37	1	211836943	211836943	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIL3	4783	broad.mit.edu	37	9	94171718	94171718	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236176844	236176844	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	36961594	36961594	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC4	58484	broad.mit.edu	37	2	32460361	32460361	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54318365	54318365	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56539809	56539809	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56565064	56565064	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56463807	56463807	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMNAT3	349565	broad.mit.edu	37	3	139280150	139280150	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD2	64127	broad.mit.edu	37	16	50753627	50753627	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOM1	64434	broad.mit.edu	37	7	156742967	156742967	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32178643	32178643	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32188208	32188208	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44560615	44560615	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPEPL1	79716	broad.mit.edu	37	20	57268829	57268829	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR5A2	2494	broad.mit.edu	37	1	200014483	200014483	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C1B	93034	broad.mit.edu	37	2	18770803	18770803	+	5'UTR	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C3	51251	broad.mit.edu	37	7	33102147	33102147	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5DC3	51559	broad.mit.edu	37	12	104181259	104181259	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88678594	88678594	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUFIP1	26747	broad.mit.edu	37	13	45563671	45563671	+	5'Flank	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP133	55746	broad.mit.edu	37	1	229600668	229600668	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	153968137	153968137	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF2B	728343	broad.mit.edu	37	X	101615492	101615492	+	3'UTR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH4	11247	broad.mit.edu	37	12	57619152	57619152	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228462074	228462074	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228492382	228492382	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167631743	167631743	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183594202	183594202	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53624885	53624885	+	Silent	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161990089	161990089	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H1	26539	broad.mit.edu	37	19	15918599	15918599	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H2	26538	broad.mit.edu	37	19	15839102	15839102	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1J2	26740	broad.mit.edu	37	9	125273575	125273575	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A12	346525	broad.mit.edu	37	7	143792957	143792957	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A25	392138	broad.mit.edu	37	7	143771552	143771552	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G3	81469	broad.mit.edu	37	1	247769603	247769603	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247310	248247310	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L3	391192	broad.mit.edu	37	1	248224140	248224140	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248366751	248366751	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T4	127074	broad.mit.edu	37	1	248524834	248524834	+	5'Flank	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C11	219429	broad.mit.edu	37	11	55371295	55371295	+	Silent	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51Q1	390061	broad.mit.edu	37	11	5443760	5443760	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AP2	338675	broad.mit.edu	37	11	56409724	56409724	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B17	219965	broad.mit.edu	37	11	58126656	58126656	+	5'Flank	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L2	26338	broad.mit.edu	37	11	55595263	55595263	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M10	390167	broad.mit.edu	37	11	56344619	56344619	+	Silent	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6F1	343169	broad.mit.edu	37	1	247875300	247875301	+	Missense_Mutation	DNP	CC	AA	AA	rs112992531		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL6	114880	broad.mit.edu	37	2	179253667	179253667	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26707430	26707430	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX5	5026	broad.mit.edu	37	17	3593191	3593191	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA2	8974	broad.mit.edu	37	5	131545977	131545977	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169433085	169433085	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169589482	169589482	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR6	79957	broad.mit.edu	37	1	156214029	156214029	+	Frame_Shift_Del	DEL	T	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25446491	25446491	+	Intron	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25448561	25448561	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX4	5078	broad.mit.edu	37	7	127251682	127251682	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91873723	91873723	+	Silent	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56128953	56128953	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA2	56146	broad.mit.edu	37	5	140175812	140175812	+	Silent	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHAC1	56135	broad.mit.edu	37	5	140308810	140308810	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB9	56127	broad.mit.edu	37	5	140567311	140567311	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA5	56110	broad.mit.edu	37	5	140744565	140744565	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGC4	56098	broad.mit.edu	37	5	140865302	140865302	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56138620	56138620	+	Splice_Site	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233136185	233136185	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71542904	71542904	+	Splice_Site	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCYT1B	9468	broad.mit.edu	37	X	24580290	24580290	+	3'UTR	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20704805	20704805	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE8B	8622	broad.mit.edu	37	5	76713967	76713967	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PELI1	57162	broad.mit.edu	37	2	64335187	64335187	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER1	5187	broad.mit.edu	37	17	8048275	8048275	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PES1	23481	broad.mit.edu	37	22	30977532	30977532	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	98155450	98155450	+	3'UTR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHC3	80012	broad.mit.edu	37	3	169899543	169899543	+	5'Flank	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB2	90102	broad.mit.edu	37	3	111637861	111637861	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGG	54872	broad.mit.edu	37	4	527726	527726	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGG	54872	broad.mit.edu	37	4	532897	532897	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98363772	98363772	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204403679	204403679	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18552547	18552547	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81187865	81187865	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81219212	81219212	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8678571	8678571	+	Intron	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG2	64857	broad.mit.edu	37	19	39915830	39915830	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG4	25894	broad.mit.edu	37	16	67319226	67319226	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA1	5361	broad.mit.edu	37	3	126751397	126751397	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131878806	131878806	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118228809	118228810	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POGZ	23126	broad.mit.edu	37	1	151400975	151400975	+	Intron	DEL	C	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLB	5423	broad.mit.edu	37	8	42207610	42207610	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133220712	133220712	+	Intron	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1A	25885	broad.mit.edu	37	2	86272899	86272899	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1B	84172	broad.mit.edu	37	2	113310460	113310460	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3F	10621	broad.mit.edu	37	20	18455927	18455927	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU5F1B	5462	broad.mit.edu	37	8	128428254	128428254	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149216513	149216513	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIL3	53938	broad.mit.edu	37	2	201746307	201746307	+	Intron	DEL	C	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIP5K2	23262	broad.mit.edu	37	5	102537262	102537262	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146085940	146085940	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAME	23532	broad.mit.edu	37	22	22890696	22890696	+	Silent	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRC1	9055	broad.mit.edu	37	15	91512930	91512930	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRC1	9055	broad.mit.edu	37	15	91517756	91517756	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM2	7799	broad.mit.edu	37	1	14096547	14096547	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKACB	5567	broad.mit.edu	37	1	84610229	84610229	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24225901	24225901	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCH	5583	broad.mit.edu	37	14	61924531	61924531	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48777168	48777168	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48826536	48826536	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRA	8575	broad.mit.edu	37	2	179306402	179306402	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLHR	2834	broad.mit.edu	37	10	120354273	120354273	+	Missense_Mutation	SNP	C	G	G	rs144077709		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR12	57479	broad.mit.edu	37	19	50102993	50102993	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR21	643905	broad.mit.edu	37	2	240982117	240982144	+	Frame_Shift_Del	DEL	GTGGGTGAAGAGGCATGGATGAAGGACT	-	-	rs147066740	byFrequency;by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS37	136242	broad.mit.edu	37	7	141540759	141540759	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS55	203074	broad.mit.edu	37	8	10389131	10389131	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43372791	43372791	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43679379	43679379	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43545392	43545392	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG7	5676	broad.mit.edu	37	19	43430163	43430163	+	Silent	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43262023	43262023	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMC2	5701	broad.mit.edu	37	7	102989143	102989143	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD1	5707	broad.mit.edu	37	2	231951952	231951952	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD2	5708	broad.mit.edu	37	3	184022010	184022010	+	Intron	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11575322	11575322	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFRN	5738	broad.mit.edu	37	1	117504037	117504037	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2B	2185	broad.mit.edu	37	8	27293395	27293395	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL3	25945	broad.mit.edu	37	3	110852594	110852594	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSOX1	5768	broad.mit.edu	37	1	180159464	180159464	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSOX1	5768	broad.mit.edu	37	1	180159812	180159812	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB34	83871	broad.mit.edu	37	17	27041896	27041896	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17696555	17696555	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP17	64901	broad.mit.edu	37	5	170341165	170341165	+	Intron	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173678841	173678841	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178442407	178442407	+	3'UTR	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL3	64926	broad.mit.edu	37	19	15571845	15571845	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80521430	80521430	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBCK1	10616	broad.mit.edu	37	20	391276	391276	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48387854	48387854	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79348663	79348663	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS12	6002	broad.mit.edu	37	4	3416626	3416626	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241262063	241262063	+	Splice_Site	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHEB	6009	broad.mit.edu	37	7	151164231	151164231	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIC8B	55188	broad.mit.edu	37	12	107209055	107209055	+	Silent	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104928554	104928554	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104987541	104987541	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87096047	87096047	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF144B	255488	broad.mit.edu	37	6	18399744	18399744	+	5'UTR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF165	494470	broad.mit.edu	37	18	44036010	44036010	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF170	81790	broad.mit.edu	37	8	42743112	42743112	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF207	388591	broad.mit.edu	37	1	6272205	6272205	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROPN1B	152015	broad.mit.edu	37	3	125694456	125694456	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10468624	10468624	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1L	23322	broad.mit.edu	37	16	53675021	53675021	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1L	23322	broad.mit.edu	37	16	53686548	53686548	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL3	6122	broad.mit.edu	37	22	39710735	39710735	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL4	6124	broad.mit.edu	37	15	66797176	66797176	+	5'UTR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA1	6195	broad.mit.edu	37	1	26872624	26872624	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP12	23223	broad.mit.edu	37	10	99150638	99150638	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159566391	159566391	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159567946	159567946	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39018549	39018549	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34102736	34102736	+	Silent	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34117912	34117912	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A4	6275	broad.mit.edu	37	1	153516469	153516469	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAA3P	6290	broad.mit.edu	37	11	18134348	18134348	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9L	219285	broad.mit.edu	37	7	92763290	92763290	+	Silent	SNP	T	C	C	rs142212031	byFrequency	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATL1	340562	broad.mit.edu	37	X	84363926	84363926	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAPER	49855	broad.mit.edu	37	15	76994155	76994155	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCG3	29106	broad.mit.edu	37	15	52011673	52011673	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCYL2	55681	broad.mit.edu	37	12	100717494	100717494	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50210531	50210531	+	Intron	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4308337	4308337	+	3'UTR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC13	6396	broad.mit.edu	37	3	10347472	10347472	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16B	89866	broad.mit.edu	37	1	177910913	177910913	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24D	9871	broad.mit.edu	37	4	119666152	119666152	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122632547	122632547	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP5	205564	broad.mit.edu	37	3	196611993	196611993	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP5	205564	broad.mit.edu	37	3	196612172	196612172	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERINC3	10955	broad.mit.edu	37	20	43150551	43150551	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB3	6317	broad.mit.edu	37	18	61323207	61323207	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD1A	9739	broad.mit.edu	37	16	30974843	30974843	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD1A	9739	broad.mit.edu	37	16	30974845	30974845	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SET	6418	broad.mit.edu	37	9	131454184	131454184	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26706651	26706651	+	Silent	SNP	C	T	T	rs147328329		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6	124925	broad.mit.edu	37	17	27297074	27297074	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7239387	7239387	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN5	94097	broad.mit.edu	37	2	73267911	73267911	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	156186311	156186311	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67099861	67099861	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGSM2	9905	broad.mit.edu	37	17	2246985	2246985	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D1B	117157	broad.mit.edu	37	1	162372583	162372583	+	Silent	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148406292	148406292	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPK	23729	broad.mit.edu	37	17	3527580	3527580	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIDT1	54847	broad.mit.edu	37	3	113326905	113326905	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPA	140885	broad.mit.edu	37	20	1917939	1917939	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF7	57823	broad.mit.edu	37	1	160722056	160722056	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC11A2	4891	broad.mit.edu	37	12	51386501	51386501	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC11A2	4891	broad.mit.edu	37	12	51386719	51386719	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC11A2	4891	broad.mit.edu	37	12	51389289	51389289	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19665960	19665960	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92922951	92922951	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92959832	92959832	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A21	89874	broad.mit.edu	37	14	37198814	37198814	+	Intron	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A27	9481	broad.mit.edu	37	6	46644292	46644292	+	3'UTR	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A37	51312	broad.mit.edu	37	8	23423746	23423746	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A2	9153	broad.mit.edu	37	15	45545435	45545435	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35A5	55032	broad.mit.edu	37	3	112299982	112299982	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35C2	51006	broad.mit.edu	37	20	44984529	44984529	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A10	124565	broad.mit.edu	37	17	79219674	79219674	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A10	124565	broad.mit.edu	37	17	79249934	79249934	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18250889	18250889	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC43A1	8501	broad.mit.edu	37	11	57258837	57258837	+	Splice_Site	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A11	6538	broad.mit.edu	37	3	10975883	10975883	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85255532	85255532	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A13	157724	broad.mit.edu	37	8	87242442	87242442	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70634945	70634945	+	Silent	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168112682	168112682	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168620627	168620627	+	Intron	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144905579	144905579	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA5	8467	broad.mit.edu	37	4	144469215	144469215	+	Silent	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCB1	6598	broad.mit.edu	37	22	24129426	24129426	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC1	6599	broad.mit.edu	37	3	47719886	47719887	+	Intron	DNP	CC	AA	AA			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88387418	88387418	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNCA	6622	broad.mit.edu	37	4	90743427	90743427	+	Silent	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNHG11	128439	broad.mit.edu	37	20	37076785	37076785	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51363054	51363054	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX4	8723	broad.mit.edu	37	3	125176076	125176076	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOHLH2	54937	broad.mit.edu	37	13	36776079	36776079	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOLH	6650	broad.mit.edu	37	16	600778	600779	+	Intron	INS	-	C	C	rs146137561	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP7	121340	broad.mit.edu	37	12	53722569	53722569	+	Silent	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARC	6678	broad.mit.edu	37	5	151051018	151051018	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHK2	56848	broad.mit.edu	37	19	49131871	49131871	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCD1	90853	broad.mit.edu	37	1	32262457	32262457	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPP2	6694	broad.mit.edu	37	2	234959606	234959606	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55648410	55648410	+	5'Flank	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158596791	158596791	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41019339	41019339	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30733731	30733731	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64485100	64485100	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRMS	6725	broad.mit.edu	37	20	62174736	62174736	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPX2	27286	broad.mit.edu	37	X	99911966	99911966	+	Intron	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM3	222183	broad.mit.edu	37	7	75894605	75894605	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149523945	149523945	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53045646	53045646	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC	6769	broad.mit.edu	37	3	36546004	36546004	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM	8027	broad.mit.edu	37	10	17726590	17726590	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAP1	26228	broad.mit.edu	37	4	68447243	68447243	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT2	6773	broad.mit.edu	37	12	56745374	56745374	+	Intron	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK10	6793	broad.mit.edu	37	5	171481838	171481838	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23749978	23749978	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK39	27347	broad.mit.edu	37	2	169103872	169103892	+	In_Frame_Del	DEL	GCCGCCGCCGCTGTCACCGGG	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX18	53407	broad.mit.edu	37	4	4421841	4421841	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5	134957	broad.mit.edu	37	6	147556517	147556517	+	Intron	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46318884	46318884	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4452510	4452510	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN5	140732	broad.mit.edu	37	20	31590750	31590750	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD4	55061	broad.mit.edu	37	1	223396808	223396808	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113169628	113169628	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC3	10460	broad.mit.edu	37	4	1737014	1737014	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF5L	27097	broad.mit.edu	37	1	229738448	229738448	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC2	26115	broad.mit.edu	37	17	61492904	61492904	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS2	80222	broad.mit.edu	37	1	150477145	150477145	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D1	23216	broad.mit.edu	37	4	38104848	38104848	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D21	161514	broad.mit.edu	37	15	74181384	74181384	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3P2	440452	broad.mit.edu	37	17	60348726	60348726	+	Frame_Shift_Del	DEL	T	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBK1	29110	broad.mit.edu	37	12	64895307	64895307	+	3'UTR	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115112623	115112623	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114837405	114837405	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139611091	139611091	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151743591	151743591	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECPR1	25851	broad.mit.edu	37	7	97870217	97870217	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT5	146279	broad.mit.edu	37	16	10776156	10776156	+	Intron	DEL	C	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20850850	20850850	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56679776	56679776	+	Silent	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98155853	98155853	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120476467	120476467	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM146	257062	broad.mit.edu	37	19	5748092	5748092	+	Intron	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM168	64418	broad.mit.edu	37	7	112407532	112407532	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29659837	29659837	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29911607	29911607	+	Intron	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMX3	54495	broad.mit.edu	37	18	66355146	66355146	+	Intron	SNP	T	C	C	rs71945526		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175292368	175292368	+	3'UTR	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32018012	32018012	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1	10043	broad.mit.edu	37	22	35743195	35743195	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP2A	7153	broad.mit.edu	37	17	38564376	38564376	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR1AIP1	26092	broad.mit.edu	37	1	179870363	179870363	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPRXL	348825	broad.mit.edu	37	3	14106924	14106924	+	3'UTR	SNP	C	A	A	rs146887121	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10920051	10920051	+	Intron	DEL	A	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10973829	10973829	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML2	79865	broad.mit.edu	37	6	41162312	41162312	+	Silent	SNP	G	T	T	rs141822677	byFrequency;by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42211039	42211039	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72667457	72667457	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM31	11074	broad.mit.edu	37	6	30072985	30072985	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM4	89122	broad.mit.edu	37	7	99490024	99490024	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14498688	14498688	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38266167	38266167	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142569271	142569271	+	3'UTR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL8	164714	broad.mit.edu	37	22	50487531	50487531	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179516782	179516783	+	Intron	INS	-	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBBP5	643224	broad.mit.edu	37	9	141070101	141070101	+	5'UTR	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBG1	7283	broad.mit.edu	37	17	40764085	40764085	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC15	79770	broad.mit.edu	37	5	134223691	134223691	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC15	79770	broad.mit.edu	37	5	134229390	134229390	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37936447	37936447	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA6	55236	broad.mit.edu	37	4	68527971	68527971	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2G1	7326	broad.mit.edu	37	17	4192814	4192814	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBIAD1	29914	broad.mit.edu	37	1	11345877	11345877	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19505708	19505708	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN1	51035	broad.mit.edu	37	11	62444254	62444254	+	Intron	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54786899	54786899	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33510402	33510402	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35406908	35406908	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF2	26019	broad.mit.edu	37	10	12009279	12009280	+	Intron	DNP	CC	AA	AA			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229783584	229783584	+	Intron	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1G	124590	broad.mit.edu	37	17	72915586	72915586	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215847654	215847654	+	Silent	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216219877	216219877	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216420112	216420112	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55598341	55598341	+	Silent	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61459536	61459536	+	Intron	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP20	27340	broad.mit.edu	37	12	101728221	101728221	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19027296	19027296	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	22452938	22452938	+	IGR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36727801	36727801	+	IGR	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65929944	65929944	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	82476563	82476563	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	133734761	133734761	+	IGR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55245736	55245736	+	IGR	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	62783573	62783573	+	IGR	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	62815137	62815137	+	IGR	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	17142273	17142273	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	4207823	4207823	+	IGR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	49345266	49345266	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95192891	95192891	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96103132	96103132	+	IGR	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20170018	20170018	+	IGR	SNP	C	G	G	rs140304162	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20450233	20450233	+	IGR	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22692328	22692328	+	IGR	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31130126	31130126	+	IGR	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	35376526	35376526	+	IGR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79528946	79528946	+	IGR	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	85805238	85805238	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32489414	32489414	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32626311	32626311	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33371504	33371504	+	IGR	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33629628	33629628	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34339141	34339141	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52689341	52689341	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20657780	20657780	+	IGR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14999075	14999075	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	75147714	75147714	+	IGR	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15778042	15778042	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	19938461	19938461	+	IGR	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22793203	22793203	+	IGR	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43158357	43158357	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	52048480	52048480	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	12898354	12898354	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903144	148903144	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149065461	149065461	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	179556363	179556363	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	236275344	236275344	+	IGR	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247400751	247400751	+	IGR	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	55688982	55688982	+	IGR	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	59438745	59438745	+	IGR	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10885090	10885090	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10899224	10899224	+	IGR	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	21798243	21798243	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24475126	24475126	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17339333	17339333	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	16134300	16134300	+	IGR	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91927172	91927172	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91927241	91927242	+	IGR	DNP	CC	AG	AG			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	152634895	152634895	+	IGR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96386910	96386910	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98031008	98031008	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	106024562	106024562	+	IGR	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	176416217	176416217	+	IGR	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190394064	190394064	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28825637	28825637	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28825782	28825782	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33012614	33012614	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9514656	9514656	+	IGR	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110286020	110286020	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110320154	110320154	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	14877736	14877736	+	IGR	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	170772282	170772282	+	IGR	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25911160	25911160	+	IGR	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75374608	75374608	+	IGR	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	92225648	92225648	+	IGR	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	39967624	39967624	+	IGR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58778521	58778521	+	IGR	SNP	T	C	C	rs66981166		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	71874830	71874830	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72294825	72294825	+	IGR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109638806	109638806	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	149031313	149031314	+	IGR	DNP	CC	AA	AA			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56297573	56297573	+	IGR	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57075545	57075545	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216761	57216761	+	IGR	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62586748	62586748	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	99905599	99905599	+	IGR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20791865	20791865	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7885854	7885854	+	IGR	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27610092	27610092	+	IGR	SNP	A	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	38643396	38643396	+	IGR	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	40332923	40332923	+	IGR	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	101801772	101801772	+	IGR	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	123307021	123307021	+	IGR	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134773700	134773700	+	IGR	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	140985676	140985676	+	IGR	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	73619066	73619066	+	IGR	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101198093	101198093	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177609075	177609075	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VENTXP7	391518	broad.mit.edu	37	3	21447901	21447902	+	RNA	INS	-	CC	CC	rs143568999	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEZT	55591	broad.mit.edu	37	12	95645844	95645844	+	Silent	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDHD1	11169	broad.mit.edu	37	14	55471735	55471735	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR19	57728	broad.mit.edu	37	4	39274582	39274582	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR1	9948	broad.mit.edu	37	4	10084555	10084555	+	Intron	SNP	C	G	G	rs139052665	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR53	348793	broad.mit.edu	37	3	196281560	196281560	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR60	55112	broad.mit.edu	37	7	158662678	158662678	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR60	55112	broad.mit.edu	37	7	158695181	158695181	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR67	93594	broad.mit.edu	37	8	124152957	124152957	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR91	29062	broad.mit.edu	37	7	134870995	134870996	+	Frame_Shift_Ins	INS	-	CACGGTGACCACAGGGG	CACGGTGACCACAGGGG			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP3	8838	broad.mit.edu	37	6	112375623	112375623	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108604018	108604018	+	Silent	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WTAP	9589	broad.mit.edu	37	6	160157394	160157395	+	Intron	INS	-	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YLPM1	56252	broad.mit.edu	37	14	75248655	75248655	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YTHDC2	64848	broad.mit.edu	37	5	112878169	112878169	+	Silent	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC4	29063	broad.mit.edu	37	4	25334902	25334902	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC14	79683	broad.mit.edu	37	6	158014043	158014043	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31809098	31809098	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77618058	77618058	+	Silent	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP106	64397	broad.mit.edu	37	15	42729559	42729559	+	Silent	SNP	T	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP30	22835	broad.mit.edu	37	19	38134077	38134077	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147128524	147128524	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM3	114026	broad.mit.edu	37	19	57647096	57647096	+	Silent	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF181	339318	broad.mit.edu	37	19	35231824	35231824	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF195	7748	broad.mit.edu	37	11	3380968	3380968	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF202	7753	broad.mit.edu	37	11	123597574	123597574	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF211	10520	broad.mit.edu	37	19	58153284	58153284	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF225	7768	broad.mit.edu	37	19	44636444	44636444	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF284	342909	broad.mit.edu	37	19	44584993	44584993	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF324B	388569	broad.mit.edu	37	19	58967524	58967524	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF395	55893	broad.mit.edu	37	8	28218359	28218359	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF434	54925	broad.mit.edu	37	16	3434572	3434572	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF451	26036	broad.mit.edu	37	6	57015521	57015521	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF502	91392	broad.mit.edu	37	3	44752308	44752308	+	5'Flank	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF512	84450	broad.mit.edu	37	2	27822533	27822533	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935348	30935348	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF592	9640	broad.mit.edu	37	15	85342529	85342529	+	Intron	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	59391	59391	+	Silent	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF610	162963	broad.mit.edu	37	19	52856949	52856949	+	Silent	SNP	C	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF679	168417	broad.mit.edu	37	7	63720730	63720730	+	Intron	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88956742	88956742	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNRF4	148066	broad.mit.edu	37	19	5456195	5456195	+	Silent	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP1	22917	broad.mit.edu	37	11	60636958	60636958	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZYG11B	79699	broad.mit.edu	37	1	53245579	53245579	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3981186	3981186	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	41774441	41774441	+	Intron	SNP	A	G	G			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22433966	22433967	+	Intron	INS	-	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	28513069	28513070	+	Intron	DEL	CT	-	-	rs497094		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	37266920	37266920	+	RNA	DEL	G	-	-			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43130543	43130543	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186671025	186671025	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89447691	89447691	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89513152	89513152	+	RNA	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89890421	89890421	+	5'Flank	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180539214	180539214	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	85166317	85166317	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7305133	7305133	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142247339	142247339	+	Intron	SNP	C	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142247527	142247527	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142494273	142494273	+	Intron	SNP	G	T	T			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38288904	38288904	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	40694919	40694919	+	Intron	SNP	G	A	A			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
