Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7703845	7703845	+	Silent	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7715154	7715154	+	Intron	SNP	T	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67148168	67148168	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215874970	215874970	+	Intron	DEL	C	-	-			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48266982	48266982	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA1	19	broad.mit.edu	37	9	107550287	107550287	+	Missense_Mutation	SNP	T	G	G	rs150283412		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA3	21	broad.mit.edu	37	16	2347904	2347904	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG2	9429	broad.mit.edu	37	4	89018790	89018790	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89386649	89386649	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACHE	43	broad.mit.edu	37	7	100490353	100490353	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20476767	20476767	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20551901	20551901	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM3	6296	broad.mit.edu	37	16	20788795	20788795	+	Silent	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20430688	20430688	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127708205	127708205	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS13	11093	broad.mit.edu	37	9	136282577	136282577	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77354871	77354871	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77401460	77401460	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43846211	43846211	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178555091	178555091	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADC	113451	broad.mit.edu	37	1	33585818	33585818	+	3'UTR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100217876	100217876	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87531207	87531207	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGK	55750	broad.mit.edu	37	7	141321435	141321436	+	Intron	DEL	TG	-	-			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105411354	105411354	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIF1L	83543	broad.mit.edu	37	9	133995667	133995667	+	Silent	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP3	10566	broad.mit.edu	37	12	4745055	4745055	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91632583	91632583	+	Intron	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134253052	134253052	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK3	57538	broad.mit.edu	37	15	85401093	85401093	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPP	250	broad.mit.edu	37	2	233244592	233244592	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALX4	60529	broad.mit.edu	37	11	44286612	44286612	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54230835	54230835	+	5'Flank	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5672774	5672774	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA2P3	305	broad.mit.edu	37	10	66585390	66585390	+	RNA	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APAF1	317	broad.mit.edu	37	12	99059100	99059100	+	Intron	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3F	200316	broad.mit.edu	37	22	39441197	39441197	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21224558	21224558	+	3'UTR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21235078	21235078	+	Silent	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOC1P1	342	broad.mit.edu	37	19	45434091	45434091	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOE	348	broad.mit.edu	37	19	45411925	45411925	+	Silent	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115361596	115361596	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP25	9938	broad.mit.edu	37	2	69045161	69045161	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF4	50649	broad.mit.edu	37	2	131803548	131803548	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23250786	23250786	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101109602	101109603	+	Intron	INS	-	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197101454	197101454	+	Silent	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31325019	31325019	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG16L1	55054	broad.mit.edu	37	2	234201865	234201865	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2A	23130	broad.mit.edu	37	11	64665699	64665699	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATHL1	80162	broad.mit.edu	37	11	292927	292927	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160039758	160039758	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203669175	203669175	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5B	506	broad.mit.edu	37	12	57037225	57037225	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPBD4	89978	broad.mit.edu	37	15	35814402	35814402	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117704368	117704368	+	3'UTR	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZI1	22994	broad.mit.edu	37	17	79171723	79171723	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT3	8703	broad.mit.edu	37	1	161141691	161141691	+	Missense_Mutation	SNP	C	T	T	rs111614721	byFrequency;by1000genomes	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS2	583	broad.mit.edu	37	16	56535181	56535193	+	Intron	DEL	AAGACTCTGTCTC	-	-	rs150693766		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33397600	33397600	+	Silent	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156626175	156626175	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL8	606	broad.mit.edu	37	15	20874802	20874802	+	3'UTR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60588570	60588570	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIP2	663	broad.mit.edu	37	15	59961004	59961004	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPTF	2186	broad.mit.edu	37	17	65850144	65850144	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137475737	137475738	+	3'UTR	INS	-	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD1	54014	broad.mit.edu	37	21	40630279	40630279	+	Intron	SNP	A	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79999808	79999808	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD16	118663	broad.mit.edu	37	10	124043431	124043431	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33566049	33566049	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf85	283129	broad.mit.edu	37	11	64722102	64722102	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf42	374470	broad.mit.edu	37	12	103700057	103700057	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112622801	112622801	+	Silent	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf39	317761	broad.mit.edu	37	14	60938435	60938435	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24922567	24922567	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf45	89927	broad.mit.edu	37	16	15661933	15661933	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf14	81626	broad.mit.edu	37	1	182869054	182869054	+	3'UTR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf158	93190	broad.mit.edu	37	1	12815789	12815789	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf187	374946	broad.mit.edu	37	1	11766418	11766418	+	Silent	SNP	C	A	A	rs150554919		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf35	79169	broad.mit.edu	37	1	228289088	228289093	+	In_Frame_Del	DEL	TCTTTG	-	-			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf49	84066	broad.mit.edu	37	1	178490351	178490351	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf195	79025	broad.mit.edu	37	20	62187844	62187844	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf77	129881	broad.mit.edu	37	2	170505760	170505760	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3P1	388503	broad.mit.edu	37	19	10169634	10169634	+	RNA	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf3	401152	broad.mit.edu	37	4	120221638	120221638	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf174	387104	broad.mit.edu	37	6	127768137	127768137	+	3'UTR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40979921	40979921	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf80	389643	broad.mit.edu	37	8	27880986	27880986	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf30	91283	broad.mit.edu	37	9	103213223	103213223	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACHD1	57685	broad.mit.edu	37	1	64936557	64936557	+	5'UTR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2742684	2742684	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181707613	181707613	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48681721	48681721	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	55003941	55003941	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2963094	2963094	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2978556	2978556	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARNS1	57571	broad.mit.edu	37	11	67191644	67191644	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104903742	104903742	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP8	841	broad.mit.edu	37	2	202131579	202131579	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ2	845	broad.mit.edu	37	1	116247745	116247745	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D2B	387707	broad.mit.edu	37	10	97769676	97769676	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219892544	219892544	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC74B	91409	broad.mit.edu	37	2	130899687	130899687	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85568543	85568543	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT7	10574	broad.mit.edu	37	2	73479685	73479685	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17076272	17076272	+	5'Flank	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD19	930	broad.mit.edu	37	16	28948703	28948703	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD38	952	broad.mit.edu	37	4	15818314	15818314	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD47	961	broad.mit.edu	37	3	107799048	107799048	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD6	923	broad.mit.edu	37	11	60785317	60785317	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD81	975	broad.mit.edu	37	11	2404476	2404476	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD99	4267	broad.mit.edu	37	X	2635785	2635785	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDADC1	81602	broad.mit.edu	37	13	49860298	49860298	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19473316	19473316	+	3'UTR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73548819	73548819	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK1	983	broad.mit.edu	37	10	62547906	62547906	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM18	729767	broad.mit.edu	37	19	51986489	51986489	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48697690	48697690	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPN	55839	broad.mit.edu	37	16	81056525	81056525	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR5	81494	broad.mit.edu	37	1	196946660	196946660	+	5'Flank	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196694524	196694524	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFLAR	8837	broad.mit.edu	37	2	202002426	202002426	+	Intron	SNP	A	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD6	84303	broad.mit.edu	37	3	126485666	126485666	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53276709	53276709	+	Intron	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA1	1134	broad.mit.edu	37	2	175622651	175622651	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST5	23563	broad.mit.edu	37	16	75563008	75563008	+	3'UTR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST5	23563	broad.mit.edu	37	16	75563474	75563474	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN15	24146	broad.mit.edu	37	7	100877770	100877770	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN1	9076	broad.mit.edu	37	3	190027981	190027981	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC12B	387837	broad.mit.edu	37	12	10167429	10167429	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC17A	388512	broad.mit.edu	37	19	14710915	14710915	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4F	165530	broad.mit.edu	37	2	71043249	71043249	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140185616	140185616	+	Intron	DEL	G	-	-			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMKLR1	1240	broad.mit.edu	37	12	108685534	108685534	+	3'UTR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87683357	87683357	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT6	57472	broad.mit.edu	37	5	179991787	179991787	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41303990	41303990	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74344240	74344240	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146536794	146536794	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103354041	103354041	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103379181	103379181	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103427520	103427520	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL20A1	57642	broad.mit.edu	37	20	61929352	61929352	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139614416	139614416	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189854960	189854960	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189861882	189861882	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111153944	111153944	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189925458	189925458	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A1	1291	broad.mit.edu	37	21	47410821	47410821	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A2	1292	broad.mit.edu	37	21	47545874	47545874	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130290238	130290238	+	Splice_Site	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO7	79585	broad.mit.edu	37	16	4408121	4408121	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPOX	1371	broad.mit.edu	37	3	98309400	98309400	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1B	1375	broad.mit.edu	37	22	51014842	51014842	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPVL	54504	broad.mit.edu	37	7	29070207	29070207	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197446916	197446916	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB5	9586	broad.mit.edu	37	7	28844166	28844166	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36706813	36706813	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBB1	1414	broad.mit.edu	37	22	26995496	26995496	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3063038	3063038	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34180202	34180202	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRNP3	80034	broad.mit.edu	37	2	166451720	166451720	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE5	4253	broad.mit.edu	37	14	39769164	39769164	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE5	4253	broad.mit.edu	37	14	39796151	39796151	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTBP2	1488	broad.mit.edu	37	10	126716241	126716241	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCF	10664	broad.mit.edu	37	16	67645894	67645894	+	Silent	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68280485	68280485	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL1	8454	broad.mit.edu	37	7	148497615	148497615	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYBA	1535	broad.mit.edu	37	16	88713266	88713266	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26A1	1592	broad.mit.edu	37	10	94836570	94836570	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72147228	72147228	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBN1	1627	broad.mit.edu	37	5	176885526	176885526	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBN1	1627	broad.mit.edu	37	5	176894024	176894024	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50942621	50942621	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDHD1	80821	broad.mit.edu	37	14	53570350	53570350	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI2	84301	broad.mit.edu	37	1	15964985	15964985	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB112	245915	broad.mit.edu	37	6	50016193	50016193	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC4	120863	broad.mit.edu	37	12	100660779	100660779	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC5	9681	broad.mit.edu	37	22	32302347	32302347	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKH	160851	broad.mit.edu	37	13	42739585	42739585	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS4	10901	broad.mit.edu	37	14	24424420	24424420	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	464974	464975	+	Intron	INS	-	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3	22894	broad.mit.edu	37	13	73346338	73346338	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLC1	10395	broad.mit.edu	37	8	12957250	12957250	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG4	1742	broad.mit.edu	37	17	7111464	7111464	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLL4	54567	broad.mit.edu	37	15	41222082	41222082	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124395614	124395614	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRT3	58524	broad.mit.edu	37	9	990765	990765	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11725838	11725838	+	Silent	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC2	27000	broad.mit.edu	37	7	102968127	102968127	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMBP	23268	broad.mit.edu	37	10	101646282	101646282	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	128841103	128841103	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25182907	25182907	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPAGT1	1798	broad.mit.edu	37	11	118969218	118969218	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF2	5977	broad.mit.edu	37	11	65113779	65113779	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35218803	35218803	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRG2	1819	broad.mit.edu	37	17	18007331	18007331	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	42080523	42080523	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56471080	56471080	+	Intron	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOX2	50506	broad.mit.edu	37	15	45394042	45394042	+	Nonsense_Mutation	SNP	C	A	A	rs148333059		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUXA	503835	broad.mit.edu	37	19	57669873	57669873	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103191726	103191726	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNLRB1	83658	broad.mit.edu	37	20	33122702	33122702	+	Intron	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71795525	71795525	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F7	144455	broad.mit.edu	37	12	77419217	77419217	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158266893	158266893	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131665592	131665592	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDAR	10913	broad.mit.edu	37	2	109547432	109547432	+	Silent	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDC4	23644	broad.mit.edu	37	16	67910950	67910950	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDC4	23644	broad.mit.edu	37	16	67911274	67911274	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDC4	23644	broad.mit.edu	37	16	67911320	67911320	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDDM3B	64184	broad.mit.edu	37	14	21238647	21238647	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDEM3	80267	broad.mit.edu	37	1	184681006	184681006	+	Silent	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD1	79631	broad.mit.edu	37	15	82456214	82456214	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHMT1	79813	broad.mit.edu	37	9	140611349	140611349	+	Silent	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37415212	37415212	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML2	24139	broad.mit.edu	37	19	46124826	46124826	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML4	27436	broad.mit.edu	37	2	42531598	42531598	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR2	30817	broad.mit.edu	37	19	14875215	14875215	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA4	2043	broad.mit.edu	37	2	222308421	222308421	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97200415	97200415	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX1	2052	broad.mit.edu	37	1	226032757	226032757	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPN2	22905	broad.mit.edu	37	17	19232056	19232056	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8L3	79574	broad.mit.edu	37	1	110293406	110293406	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212566539	212566539	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC	2121	broad.mit.edu	37	4	5810099	5810099	+	Intron	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVX2	344191	broad.mit.edu	37	2	176947278	176947278	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133749316	133749316	+	3'UTR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT2	2132	broad.mit.edu	37	11	44165921	44165921	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197021763	197021763	+	Splice_Site	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAHD2B	151313	broad.mit.edu	37	2	97749675	97749675	+	Intron	SNP	G	A	A	rs140595149	by1000genomes	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40A	85369	broad.mit.edu	37	1	110596155	110596155	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40B	57464	broad.mit.edu	37	7	129100269	129100269	+	Intron	SNP	T	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55A	120400	broad.mit.edu	37	11	114401171	114401171	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM58A	92002	broad.mit.edu	37	X	152859976	152859976	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM58B	339521	broad.mit.edu	37	1	200182760	200182760	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12030378	12030378	+	Intron	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12237240	12237240	+	Intron	DEL	G	-	-			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12272697	12272697	+	Intron	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANK1	92565	broad.mit.edu	37	10	127697946	127697946	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARSB	10056	broad.mit.edu	37	2	223484533	223484533	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92534618	92534618	+	Silent	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLIM1	54751	broad.mit.edu	37	1	16091771	16091771	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL21	26223	broad.mit.edu	37	5	135272539	135272539	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15928526	15928526	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15936487	15936487	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO18	84893	broad.mit.edu	37	10	5955790	5955790	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40419930	40419930	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZF1	389549	broad.mit.edu	37	7	121943805	121943805	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9L	360132	broad.mit.edu	37	7	55753014	55753014	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLCN	201163	broad.mit.edu	37	17	17125724	17125724	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128475757	128475757	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1	2332	broad.mit.edu	37	X	147013849	147013854	+	Intron	DEL	CATATA	-	-	rs73606781	by1000genomes	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC7	163479	broad.mit.edu	37	1	109276198	109276198	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXI2	399823	broad.mit.edu	37	10	129536807	129536807	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK2	3607	broad.mit.edu	37	17	80544225	80544225	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79205794	79205794	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT8	2530	broad.mit.edu	37	14	66082912	66082912	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101258801	101258801	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABPA	2551	broad.mit.edu	37	21	27135424	27135424	+	Intron	DEL	T	-	-			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46981053	46981053	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161580589	161580589	+	3'UTR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALM	130589	broad.mit.edu	37	2	38958889	38958889	+	Silent	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31154839	31154839	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31215591	31215591	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GANAB	23193	broad.mit.edu	37	11	62400265	62400265	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP6	163351	broad.mit.edu	37	1	89834209	89834209	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDI2	2665	broad.mit.edu	37	10	5827422	5827422	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGCX	2677	broad.mit.edu	37	2	85781125	85781125	+	Intron	SNP	T	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIT1	28964	broad.mit.edu	37	17	27905964	27905964	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJB4	127534	broad.mit.edu	37	1	35227576	35227576	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI1	2735	broad.mit.edu	37	12	57863398	57863398	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLOD5	392465	broad.mit.edu	37	X	48629475	48629475	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151266343	151266343	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLS2	27165	broad.mit.edu	37	12	56881845	56881845	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR26	2849	broad.mit.edu	37	10	125426265	125426265	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123479337	123479337	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRASP	160622	broad.mit.edu	37	12	52402862	52402862	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB7	2886	broad.mit.edu	37	17	37901389	37901389	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37346036	37346036	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7620469	7620469	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA5	221357	broad.mit.edu	37	6	52713848	52713848	+	5'Flank	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTSF1L	149699	broad.mit.edu	37	20	42355398	42355398	+	5'UTR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A3	2982	broad.mit.edu	37	4	156643013	156643013	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUK1	2987	broad.mit.edu	37	1	228333279	228333279	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMB	3002	broad.mit.edu	37	14	25100341	25100341	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240097978	240097978	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91727809	91727809	+	Silent	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91841230	91841230	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHAT	55733	broad.mit.edu	37	1	210847693	210847693	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIP1	3092	broad.mit.edu	37	7	75221203	75221203	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2BE	8349	broad.mit.edu	37	1	149858184	149858184	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176315903	176315903	+	Intron	SNP	A	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS2	3158	broad.mit.edu	37	1	120298351	120298351	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMHA1	23526	broad.mit.edu	37	19	1080588	1080588	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76463821	76463821	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPM	4670	broad.mit.edu	37	19	8550658	8550658	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152187998	152187998	+	Nonsense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90B3P	343477	broad.mit.edu	37	1	92109200	92109200	+	Silent	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA4	203100	broad.mit.edu	37	8	38831817	38831817	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70995855	70995855	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ID1	3397	broad.mit.edu	37	20	30193153	30193153	+	5'UTR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDUA	3425	broad.mit.edu	37	4	997367	997367	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFFO1	25900	broad.mit.edu	37	12	6658970	6658970	+	Silent	SNP	G	A	A	rs138562505		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC3	9543	broad.mit.edu	37	15	65622919	65622919	+	Silent	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL31	386653	broad.mit.edu	37	12	122657100	122657100	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL3RA	3563	broad.mit.edu	37	X	1499841	1499841	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143235948	143235948	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPMK	253430	broad.mit.edu	37	10	59975836	59975836	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISCU	23479	broad.mit.edu	37	12	108959109	108959109	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISM1	140862	broad.mit.edu	37	20	13280019	13280019	+	Silent	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITFG1	81533	broad.mit.edu	37	16	47488232	47488232	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB3BP	23421	broad.mit.edu	37	1	63955734	63955734	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54780413	54780413	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26749907	26749907	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP3	282973	broad.mit.edu	37	10	133958651	133958651	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JRK	8629	broad.mit.edu	37	8	143747207	143747207	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAZ	23254	broad.mit.edu	37	1	15361393	15361394	+	Intron	DEL	CC	-	-			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAZ	23254	broad.mit.edu	37	1	15420685	15420685	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211035408	211035408	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	170159686	170159686	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK15	60598	broad.mit.edu	37	20	43378633	43378633	+	Intron	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62076578	62076578	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10600419	10600419	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0196	9897	broad.mit.edu	37	8	126091004	126091004	+	Silent	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0317	9870	broad.mit.edu	37	14	75142577	75142577	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0368	23392	broad.mit.edu	37	9	114155912	114155912	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1530	57654	broad.mit.edu	37	4	1369427	1369427	+	Intron	SNP	A	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200943165	200943165	+	3'UTR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901812	51901812	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2C	11004	broad.mit.edu	37	1	45220380	45220380	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL1	3802	broad.mit.edu	37	19	55281414	55281414	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55270251	55270251	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70535587	70535587	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRC3	3823	broad.mit.edu	37	12	10584686	10584686	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRC4	8302	broad.mit.edu	37	12	10560232	10560232	+	3'UTR	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRD1	3824	broad.mit.edu	37	12	10460674	10460674	+	5'UTR	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT2	3849	broad.mit.edu	37	12	53041648	53041648	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6B	3854	broad.mit.edu	37	12	52843064	52843064	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21474925	21474925	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARGE	9215	broad.mit.edu	37	22	34046288	34046288	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS6	253782	broad.mit.edu	37	2	169547564	169547564	+	Silent	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136594656	136594656	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71971889	71971889	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71978259	71978259	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55145225	55145225	+	Intron	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54761086	54761087	+	5'UTR	INS	-	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC441601	441601	broad.mit.edu	37	11	50254415	50254415	+	RNA	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647121	647121	broad.mit.edu	37	1	121309838	121309838	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23161990	23161990	+	RNA	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOXL3	84695	broad.mit.edu	37	2	74763216	74763216	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160953584	160953584	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161011910	161011910	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82452662	82452662	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH3	84859	broad.mit.edu	37	3	197554103	197554103	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42356779	42356779	+	Silent	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP10	26020	broad.mit.edu	37	14	23344228	23344228	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141110564	141110564	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141110653	141110653	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141128318	141128318	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	142237928	142237928	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170151164	170151164	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40702895	40702895	+	Intron	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP4	8425	broad.mit.edu	37	19	41114293	41114293	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY96	23643	broad.mit.edu	37	8	74903787	74903787	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYG2	254773	broad.mit.edu	37	2	99863100	99863100	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39844179	39844179	+	Silent	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB1	4112	broad.mit.edu	37	X	30268769	30268769	+	Silent	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB3	4114	broad.mit.edu	37	X	30254710	30254710	+	Silent	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAG	4099	broad.mit.edu	37	19	35804024	35804024	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2C1	4123	broad.mit.edu	37	15	75651770	75651770	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2C1	4123	broad.mit.edu	37	15	75654158	75654158	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4	4134	broad.mit.edu	37	3	47957470	47957470	+	Nonsense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164449921	164449921	+	Silent	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBNL3	55796	broad.mit.edu	37	X	131573492	131573492	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEAF6	64769	broad.mit.edu	37	1	37979055	37979075	+	In_Frame_Del	DEL	GAATAATATTGCCATACATCT	-	-			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116413452	116413452	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MID1	4281	broad.mit.edu	37	X	10535644	10535644	+	Splice_Site	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR521-2	574481	broad.mit.edu	37	19	54219700	54219700	+	5'Flank	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR665	100126315	broad.mit.edu	37	14	101341417	101341417	+	RNA	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLXIP	22877	broad.mit.edu	37	12	122625515	122625515	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154861315	154861315	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP19	4327	broad.mit.edu	37	12	56230818	56230818	+	3'UTR	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP2	4355	broad.mit.edu	37	17	41958159	41958159	+	Silent	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC2	9902	broad.mit.edu	37	17	60744608	60744608	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A6E	245802	broad.mit.edu	37	11	60105568	60105568	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH4	4438	broad.mit.edu	37	1	76344974	76344974	+	Intron	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSL1	339287	broad.mit.edu	37	17	38287837	38287837	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSTO2P	100129405	broad.mit.edu	37	1	155717651	155717651	+	Silent	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9086155	9086155	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100695337	100695337	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3242083	3242083	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCL1	4610	broad.mit.edu	37	1	40363447	40363447	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10419599	10419599	+	Nonsense_Mutation	SNP	C	A	A	rs149095511		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10419608	10419608	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23883231	23883231	+	Silent	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO15A	51168	broad.mit.edu	37	17	18023155	18023155	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26294576	26294576	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1B	4430	broad.mit.edu	37	2	192275861	192275861	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1B	4430	broad.mit.edu	37	2	192275912	192275912	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1H	283446	broad.mit.edu	37	12	109853404	109853404	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1	4661	broad.mit.edu	37	20	62871864	62871864	+	3'UTR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAAA	27163	broad.mit.edu	37	4	76851519	76851519	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAIP	4671	broad.mit.edu	37	5	70308281	70308281	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15519895	15519895	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145281882	145281882	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145359298	145359298	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144621558	144621558	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA3	8202	broad.mit.edu	37	20	46254147	46254147	+	Silent	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA6	23054	broad.mit.edu	37	20	33330706	33330706	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45105228	45105228	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO2	81831	broad.mit.edu	37	16	47163342	47163342	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEU4	129807	broad.mit.edu	37	2	242756197	242756197	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL3	57185	broad.mit.edu	37	1	24776161	24776161	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLN	57486	broad.mit.edu	37	5	65084484	65084484	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC5	84166	broad.mit.edu	37	16	57113062	57113062	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56538866	56538867	+	Frame_Shift_Ins	INS	-	CC	CC			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMUR2	56923	broad.mit.edu	37	5	151784223	151784223	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP2	4839	broad.mit.edu	37	12	6675688	6675688	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS3	4846	broad.mit.edu	37	7	150703845	150703845	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1I3	9970	broad.mit.edu	37	1	161207899	161207899	+	5'UTR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115422452	115422452	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32472118	32472118	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP2	83714	broad.mit.edu	37	12	2936904	2936904	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP2	83714	broad.mit.edu	37	12	2943997	2943997	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105167242	105167242	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88678610	88678610	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163317686	163317686	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	154034178	154034178	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP50	10762	broad.mit.edu	37	22	45580629	45580629	+	3'UTR	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NYNRIN	57523	broad.mit.edu	37	14	24884150	24884150	+	Silent	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28267587	28267587	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78433860	78433860	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50966404	50966404	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLAH	55301	broad.mit.edu	37	10	15107658	15107658	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPHN1	4983	broad.mit.edu	37	X	67331626	67331626	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10AD1	121275	broad.mit.edu	37	12	48596695	48596695	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158389727	158389727	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H6	122748	broad.mit.edu	37	14	20692096	20692096	+	Silent	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11L1	391189	broad.mit.edu	37	1	248004695	248004695	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR12D2	26529	broad.mit.edu	37	6	29364792	29364792	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG2	338755	broad.mit.edu	37	11	6789756	6789756	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T4	127074	broad.mit.edu	37	1	248525769	248525769	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K14	122740	broad.mit.edu	37	14	20483365	20483365	+	5'Flank	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E4	390081	broad.mit.edu	37	11	5905694	5905694	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A1	120796	broad.mit.edu	37	11	6048374	6048374	+	Silent	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AN1	390195	broad.mit.edu	37	11	59132388	59132388	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H15	403274	broad.mit.edu	37	3	97887574	97887574	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M9	390162	broad.mit.edu	37	11	56230566	56230566	+	Silent	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6T1	219874	broad.mit.edu	37	11	123814374	123814374	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7E24	26648	broad.mit.edu	37	19	9361887	9361887	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8I2	120586	broad.mit.edu	37	11	55860777	55860777	+	5'Flank	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL10	114884	broad.mit.edu	37	3	31871646	31871646	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL5	114879	broad.mit.edu	37	11	3147662	3147662	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSMR	9180	broad.mit.edu	37	5	38919157	38919157	+	Silent	SNP	C	T	T	rs61734274	byFrequency	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29650551	29650551	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXA1L	5018	broad.mit.edu	37	14	23240211	23240211	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52668615	52668615	+	Intron	SNP	T	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBXIP1	57326	broad.mit.edu	37	1	154923837	154923837	+	Missense_Mutation	SNP	G	A	A	rs144138798		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55700697	55700697	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55755635	55755636	+	Intron	DNP	CC	AA	AA			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDP1	200373	broad.mit.edu	37	2	120387532	120387532	+	Splice_Site	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47810811	47810811	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD11	22984	broad.mit.edu	37	10	105191887	105191887	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165808736	165808736	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66833286	66833286	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE5A	8654	broad.mit.edu	37	4	120488144	120488144	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149312169	149312169	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20373709	20373709	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20380967	20380967	+	Silent	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDP2	57546	broad.mit.edu	37	16	66918316	66918316	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGAP1	80055	broad.mit.edu	37	2	197784557	197784557	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58349576	58349576	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF2	5253	broad.mit.edu	37	9	96392140	96392140	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIM3	415116	broad.mit.edu	37	22	50356528	50356528	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIM3	415116	broad.mit.edu	37	22	50356707	50356707	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PJA2	9867	broad.mit.edu	37	5	108704449	108704449	+	Splice_Site	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47853457	47853457	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47866869	47866869	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9343696	9343696	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG1	5335	broad.mit.edu	37	20	39794177	39794177	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG1	5335	broad.mit.edu	37	20	39795098	39795098	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131951237	131951237	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG4B	153478	broad.mit.edu	37	5	182248	182248	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLTP	5360	broad.mit.edu	37	20	44538120	44538120	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLVAP	83483	broad.mit.edu	37	19	17476412	17476412	+	Silent	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L11	441263	broad.mit.edu	37	7	76619450	76619450	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP1	5407	broad.mit.edu	37	10	118360714	118360714	+	Splice_Site	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PODN	127435	broad.mit.edu	37	1	53535678	53535678	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133237666	133237666	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1B	84172	broad.mit.edu	37	2	113310160	113310160	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F2	5452	broad.mit.edu	37	19	42600252	42600252	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAP2B	8613	broad.mit.edu	37	1	57004312	57004312	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149216087	149216087	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	82070623	82070623	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1A	5494	broad.mit.edu	37	14	60759220	60759220	+	3'UTR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1H	57460	broad.mit.edu	37	12	63225839	63225839	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP6C	5537	broad.mit.edu	37	9	127920340	127920340	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM10	56980	broad.mit.edu	37	11	129814846	129814846	+	Silent	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23517871	23517871	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDX3	10935	broad.mit.edu	37	10	120933463	120933463	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM1	5557	broad.mit.edu	37	12	57136825	57136825	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57467240	57467240	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCA	5578	broad.mit.edu	37	17	64299089	64299089	+	Silent	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54395925	54395925	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48701460	48701460	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT8	56341	broad.mit.edu	37	12	3686040	3686040	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRODH2	58510	broad.mit.edu	37	19	36302983	36302983	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROP1	5626	broad.mit.edu	37	5	177421277	177421277	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF38B	55119	broad.mit.edu	37	1	109241695	109241695	+	Intron	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRX1	5396	broad.mit.edu	37	1	170699562	170699562	+	Intron	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43383759	43383759	+	5'UTR	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMC6	5706	broad.mit.edu	37	14	53177706	53177706	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTMS	5763	broad.mit.edu	37	12	6879667	6879668	+	3'UTR	INS	-	C	C	rs141146858	by1000genomes	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	71016248	71016249	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220166166	220166166	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220167287	220167287	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40714510	40714510	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYCR2	29920	broad.mit.edu	37	1	226110141	226110141	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYCRL	65263	broad.mit.edu	37	8	144689070	144689070	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSER1	79832	broad.mit.edu	37	11	32990614	32990614	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB2B	84932	broad.mit.edu	37	14	21930621	21930621	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGGTA	5875	broad.mit.edu	37	14	24735807	24735807	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP1	10635	broad.mit.edu	37	12	4648105	4648105	+	5'UTR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54B	25788	broad.mit.edu	37	8	95411503	95411503	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA1	5921	broad.mit.edu	37	5	86628288	86628288	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114782654	114782654	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL1	8437	broad.mit.edu	37	12	113543702	113543702	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47044476	47044477	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H1	149041	broad.mit.edu	37	1	173934332	173934332	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1P	5969	broad.mit.edu	37	2	79364398	79364398	+	RNA	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC5	5985	broad.mit.edu	37	12	118465911	118465911	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS10	6001	broad.mit.edu	37	10	121275047	121275047	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOU	58480	broad.mit.edu	37	1	228873641	228873641	+	Intron	DEL	T	-	-	rs35672194		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT1	6016	broad.mit.edu	37	1	155870156	155870156	+	3'UTR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE12	493901	broad.mit.edu	37	14	21058864	21058864	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF130	55819	broad.mit.edu	37	5	179467544	179467544	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94484653	94484653	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL23P8	222901	broad.mit.edu	37	7	20866978	20866978	+	RNA	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL7A	6130	broad.mit.edu	37	9	136216155	136216155	+	Intron	SNP	G	A	A	rs147366255	by1000genomes	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA2	6196	broad.mit.edu	37	6	166952376	166952376	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC2	65117	broad.mit.edu	37	12	123005861	123005861	+	Intron	SNP	T	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	92983040	92983040	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100PBP	64766	broad.mit.edu	37	1	33292039	33292039	+	Silent	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARS2	54938	broad.mit.edu	37	19	39409051	39409051	+	Intron	SNP	C	T	T	rs60352446		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAND3	114821	broad.mit.edu	37	6	28540528	28540528	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCIN	85477	broad.mit.edu	37	7	12680151	12680151	+	Intron	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167141098	167141098	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4153810	4153810	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24C	9632	broad.mit.edu	37	10	75528692	75528692	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84658570	84658570	+	Intron	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101176517	101176517	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT1	1731	broad.mit.edu	37	16	30391340	30391340	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42532073	42532073	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD3	84193	broad.mit.edu	37	14	99879343	99879343	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B3	23450	broad.mit.edu	37	16	70573038	70573039	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D4A	63898	broad.mit.edu	37	8	19192164	19192164	+	Intron	DEL	T	-	-			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC1	54436	broad.mit.edu	37	4	8220037	8220037	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGIRR	59307	broad.mit.edu	37	11	407965	407965	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC15	284266	broad.mit.edu	37	18	43421949	43421949	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100838959	100838959	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPB1	10326	broad.mit.edu	37	20	1552325	1552325	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKA3	221150	broad.mit.edu	37	13	21729744	21729744	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A2	10246	broad.mit.edu	37	6	25915958	25915958	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22396178	22396178	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A6	6511	broad.mit.edu	37	19	15083694	15083694	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103006517	103006517	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A1	9154	broad.mit.edu	37	15	85487954	85487954	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC29A3	55315	broad.mit.edu	37	10	73121984	73121984	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A2	7780	broad.mit.edu	37	1	26372278	26372278	+	Intron	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F3	148641	broad.mit.edu	37	1	234454683	234454683	+	Silent	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A9	55334	broad.mit.edu	37	14	69908952	69908952	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC41A2	84102	broad.mit.edu	37	12	105321916	105321916	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33947450	33947450	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110709673	110709673	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1219834	1219834	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40402082	40402082	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A2	6549	broad.mit.edu	37	2	103317603	103317603	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2B1	11309	broad.mit.edu	37	11	74914095	74914095	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98770956	98770956	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20568941	20568941	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164906989	164906989	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC2	64094	broad.mit.edu	37	6	169067092	169067092	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-20	100033460	broad.mit.edu	37	15	25468258	25468258	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51449322	51449322	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX8	29886	broad.mit.edu	37	7	2297597	2297597	+	Intron	SNP	A	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SON	6651	broad.mit.edu	37	21	34918600	34918600	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106970956	106970956	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX10	6663	broad.mit.edu	37	22	38379591	38379591	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16261724	16261724	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167983618	167983618	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167983777	167983777	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158618419	158618419	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRR	63826	broad.mit.edu	37	17	2224940	2224940	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX3	10214	broad.mit.edu	37	X	48216750	48216750	+	5'Flank	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA2	8128	broad.mit.edu	37	15	92973239	92973239	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11IP	114790	broad.mit.edu	37	2	220477819	220477819	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11	6794	broad.mit.edu	37	19	1207078	1207078	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK33	65975	broad.mit.edu	37	11	8578924	8578924	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP1	6812	broad.mit.edu	37	9	130428493	130428493	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD2	56241	broad.mit.edu	37	22	24584423	24584423	+	3'UTR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2B	9899	broad.mit.edu	37	15	91827441	91827441	+	Silent	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113194786	113194786	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYMPK	8189	broad.mit.edu	37	19	46357804	46357804	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN3	8224	broad.mit.edu	37	22	33265054	33265054	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT15	83849	broad.mit.edu	37	10	46964083	46964083	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL1	84958	broad.mit.edu	37	1	27679907	27679907	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL2	54843	broad.mit.edu	37	11	85428555	85428555	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYVN1	84447	broad.mit.edu	37	11	64900727	64900727	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC3	10460	broad.mit.edu	37	4	1725333	1725333	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160031569	160031569	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R13	50838	broad.mit.edu	37	12	11061032	11061032	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX15	6913	broad.mit.edu	37	1	119427674	119427674	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	52927128	52927128	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT3	64518	broad.mit.edu	37	17	15211833	15211833	+	Intron	SNP	T	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20871686	20871686	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30705190	30705190	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM2	26230	broad.mit.edu	37	6	155465668	155465668	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM2	26230	broad.mit.edu	37	6	155465909	155465909	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166981071	166981071	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63054226	63054226	+	Intron	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED3	23423	broad.mit.edu	37	15	79606204	79606204	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126138085	126138085	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM189	387521	broad.mit.edu	37	20	48741560	48741560	+	3'UTR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC4	84899	broad.mit.edu	37	13	101286989	101286989	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP6	7130	broad.mit.edu	37	2	152220649	152220649	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF8	943	broad.mit.edu	37	1	12140164	12140164	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF11	8600	broad.mit.edu	37	13	43175189	43175189	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNK2	10188	broad.mit.edu	37	3	195610174	195610174	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT3	7140	broad.mit.edu	37	11	1955113	1955113	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN2	219931	broad.mit.edu	37	11	68835056	68835056	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPD52L2	7165	broad.mit.edu	37	20	62517464	62517464	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144288333	144288333	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPP2	7174	broad.mit.edu	37	13	103297230	103297230	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20126703	20126703	+	Intron	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10906860	10906860	+	3'UTR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPX2	22974	broad.mit.edu	37	20	30388637	30388637	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF6	7189	broad.mit.edu	37	11	36520017	36520017	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM45	80263	broad.mit.edu	37	1	117654812	117654812	+	3'UTR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55034988	55034988	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM7	81786	broad.mit.edu	37	5	180625764	180625764	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM9	114088	broad.mit.edu	37	14	51561379	51561379	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14359323	14359323	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230675910	230675910	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72967855	72967855	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10	80705	broad.mit.edu	37	2	99697698	99697698	+	Intron	DEL	C	-	-			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10	80705	broad.mit.edu	37	2	99720657	99720657	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81610058	81610058	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768902	31768902	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSNAXIP1	55815	broad.mit.edu	37	16	67858717	67858717	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC18	118491	broad.mit.edu	37	10	75051834	75051834	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL6	284076	broad.mit.edu	37	17	46867264	46867264	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP4	56995	broad.mit.edu	37	6	158919876	158919876	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC16	57544	broad.mit.edu	37	14	52936818	52936818	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNRD1	7296	broad.mit.edu	37	12	104709747	104709747	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4A	9354	broad.mit.edu	37	11	118250358	118250358	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBTD2	92181	broad.mit.edu	37	5	171682218	171682218	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35955676	35955676	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1L	23074	broad.mit.edu	37	12	100451895	100451895	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCC	55245	broad.mit.edu	37	20	33891776	33891776	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215802231	215802231	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP20	10868	broad.mit.edu	37	9	132623374	132623374	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP38	84640	broad.mit.edu	37	4	144118998	144118998	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	8993022	8993022	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP20	27340	broad.mit.edu	37	12	101702085	101702085	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTY	7404	broad.mit.edu	37	Y	15361647	15361647	+	3'UTR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38931270	38931270	+	IGR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	82896537	82896537	+	IGR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	86320338	86320338	+	IGR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	92813951	92813951	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	110659511	110659511	+	IGR	DEL	G	-	-			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18175284	18175284	+	IGR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27828567	27828567	+	IGR	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4388462	4388462	+	IGR	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48611728	48611728	+	IGR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50129476	50129476	+	IGR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56268671	56268671	+	IGR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59055866	59055866	+	IGR	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	93921635	93921635	+	IGR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	19566373	19566373	+	IGR	SNP	T	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34362172	34362172	+	IGR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55916979	55916979	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80658658	80658658	+	IGR	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80717559	80717559	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19968410	19968410	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	32057683	32057683	+	IGR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	66362179	66362179	+	IGR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806560	19806560	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20084517	20084517	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137319	20137319	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20482397	20482397	+	IGR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20992625	20992625	+	IGR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45334630	45334630	+	IGR	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20456579	20456579	+	IGR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79851677	79851677	+	IGR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	11336448	11336448	+	IGR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33038914	33038914	+	IGR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33497362	33497362	+	IGR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76269079	76269079	+	IGR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	78123217	78123217	+	IGR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22253212	22253212	+	IGR	SNP	C	G	G	rs4450426		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60217414	60217414	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	64881449	64881449	+	IGR	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	4459301	4459301	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	63778752	63778752	+	IGR	SNP	A	G	G	rs143811833	by1000genomes	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	68893518	68893518	+	IGR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22882440	22882440	+	IGR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23032162	23032162	+	IGR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55210175	55210175	+	IGR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13882172	13882172	+	IGR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146527929	146527929	+	IGR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187532115	187532115	+	IGR	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	200833012	200833012	+	IGR	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238196636	238196636	+	IGR	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	243214035	243214035	+	IGR	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249066288	249066288	+	IGR	SNP	A	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79987888	79987888	+	IGR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181000	11181000	+	IGR	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181104	11181104	+	IGR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	21797935	21797935	+	IGR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130987124	130987124	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131027316	131027316	+	IGR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83084015	83084015	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	88289363	88289363	+	IGR	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91795582	91795582	+	IGR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	98018802	98018802	+	IGR	SNP	A	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	178211561	178211561	+	IGR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	6815114	6815114	+	IGR	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87101023	87101024	+	IGR	DNP	GT	AA	AA			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90262858	90262858	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11374252	11374252	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135873528	135873529	+	IGR	DNP	GG	TC	TC			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	163906216	163906216	+	IGR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	22596087	22596087	+	IGR	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70261457	70261457	+	IGR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174386292	174386292	+	IGR	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23303747	23303747	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910350	25910350	+	IGR	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30365727	30365727	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41967375	41967375	+	IGR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	142383994	142383995	+	IGR	DNP	CC	AA	AA			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49327724	49327724	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56978379	56978379	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57084236	57084236	+	IGR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62517803	62517803	+	IGR	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63355030	63355030	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	85010701	85010701	+	IGR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	61851528	61851528	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86554931	86554931	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86556167	86556168	+	IGR	DNP	CG	AA	AA			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357206	68357206	+	IGR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115239045	115239045	+	IGR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144713849	144713850	+	IGR	DNP	GG	TT	TT			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147280152	147280152	+	IGR	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79828178	79828178	+	IGR	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	95228986	95228986	+	IGR	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82786237	82786237	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82833543	82833543	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100587852	100587852	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG2	23584	broad.mit.edu	37	11	124621476	124621476	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDHD1	11169	broad.mit.edu	37	14	55429914	55429914	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR43	23160	broad.mit.edu	37	2	29136679	29136679	+	Intron	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR48	57599	broad.mit.edu	37	3	39108230	39108230	+	Intron	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR59	79726	broad.mit.edu	37	16	74943862	74943862	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR69	164781	broad.mit.edu	37	2	228786358	228786358	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR75	84128	broad.mit.edu	37	2	190331122	190331122	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT2	7472	broad.mit.edu	37	7	116937675	116937675	+	Silent	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168105626	168105626	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP1	7511	broad.mit.edu	37	10	111633292	111633292	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO7	23039	broad.mit.edu	37	8	21856831	21856831	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB10	65986	broad.mit.edu	37	8	81426180	81426180	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB40	9923	broad.mit.edu	37	1	22853015	22853015	+	3'UTR	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC11	23318	broad.mit.edu	37	1	52901105	52901105	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC7	84186	broad.mit.edu	37	9	37305697	37305697	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC6	64429	broad.mit.edu	37	10	114192186	114192186	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE21	79038	broad.mit.edu	37	14	104192963	104192963	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68273500	68273500	+	Intron	DEL	A	-	-			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM6	9204	broad.mit.edu	37	1	35477543	35477543	+	Nonsense_Mutation	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF138	7697	broad.mit.edu	37	7	64275283	64275284	+	Intron	DEL	GC	-	-	rs7809431	by1000genomes	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF214	7761	broad.mit.edu	37	11	7022088	7022088	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF224	7767	broad.mit.edu	37	19	44605073	44605073	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF268	10795	broad.mit.edu	37	12	133732053	133732053	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF335	63925	broad.mit.edu	37	20	44578472	44578472	+	Silent	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF341	84905	broad.mit.edu	37	20	32368854	32368854	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21465382	21465382	+	Intron	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF500	26048	broad.mit.edu	37	16	4815539	4815539	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF566	84924	broad.mit.edu	37	19	36963677	36963677	+	Intron	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF623	9831	broad.mit.edu	37	8	144733027	144733027	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF624	57547	broad.mit.edu	37	17	16527059	16527059	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF655	79027	broad.mit.edu	37	7	99161786	99161786	+	Intron	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF665	79788	broad.mit.edu	37	19	53668506	53668506	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF692	55657	broad.mit.edu	37	1	249150836	249150836	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63667629	63667629	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF746	155061	broad.mit.edu	37	7	149191267	149191267	+	Intron	SNP	C	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780A	284323	broad.mit.edu	37	19	40581599	40581599	+	Missense_Mutation	SNP	T	A	A	rs140183562	byFrequency	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57769595	57769595	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF85	7639	broad.mit.edu	37	19	21132566	21132566	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	134628115	134628115	+	Silent	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22309600	22309600	+	Intron	SNP	T	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22356394	22356394	+	Intron	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22592238	22592238	+	Intron	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	28618518	28618518	+	Intron	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	34583634	34583634	+	Silent	SNP	G	C	C			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105012348	105012348	+	Intron	SNP	A	G	G			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	146297274	146297274	+	5'Flank	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38279737	38279737	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63370796	63370796	+	Intron	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63816225	63816225	+	RNA	SNP	G	A	A			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
