Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
BAI2	576	broad.mit.edu	36	1	31979906	31979906	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			A	C	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	31979906	31979906	BAI2	1	A	A	C	8
SGIP1	84251	broad.mit.edu	36	1	66920155	66920155	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	66920155	66920155	SGIP1	1	C	C	A	26
RORC	6097	broad.mit.edu	36	1	150052047	150052047	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	150052047	150052047	RORC	1	G	G	A	39
PEAR1	375033	broad.mit.edu	36	1	155149369	155149369	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	155149369	155149369	PEAR1	1	G	G	A	38
FAM190B	54462	broad.mit.edu	36	10	86121396	86121396	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	86121396	86121396	FAM190B	10	T	T	C	61
COL17A1	1308	broad.mit.edu	36	10	105827221	105827221	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	105827221	105827221	COL17A1	10	G	G	T	39
MKI67	4288	broad.mit.edu	36	10	129797435	129797435	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	129797435	129797435	MKI67	10	G	G	A	34
ANO3	63982	broad.mit.edu	36	11	26638567	26638567	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	26638567	26638567	ANO3	11	G	G	A	36
CARD17	440068	broad.mit.edu	36	11	104477348	104477348	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	104477348	104477348	CARD17	11	C	C	G	26
TUBA3C	7278	broad.mit.edu	36	13	18646092	18646092	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	18646092	18646092	TUBA3C	13	G	G	C	39
DYNC1H1	1778	broad.mit.edu	36	14	101586624	101586624	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	101586624	101586624	DYNC1H1	14	C	C	T	27
FBXL16	146330	broad.mit.edu	36	16	685880	685880	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	685880	685880	FBXL16	16	C	C	G	23
HYDIN	54768	broad.mit.edu	36	16	69512219	69512219	+	Missense_Mutation	SNP	T	T	G	rs67115747	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	69512219	69512219	HYDIN	16	T	T	G	59
TP53	7157	broad.mit.edu	36	17	7518296	7518296	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7518296	7518296	TP53	17	A	A	T	8
SLC5A10	125206	broad.mit.edu	36	17	18813408	18813408	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	18813408	18813408	SLC5A10	17	C	C	T	19
ALDOC	230	broad.mit.edu	36	17	23924969	23924969	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	23924969	23924969	ALDOC	17	G	G	A	38
KRT13	3860	broad.mit.edu	36	17	36911044	36911044	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	36911044	36911044	KRT13	17	C	C	T	19
JUP	3728	broad.mit.edu	36	17	37172789	37172789	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	37172789	37172789	JUP	17	T	T	C	60
EPB41L3	23136	broad.mit.edu	36	18	5424019	5424019	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	5424019	5424019	EPB41L3	18	T	T	A	54
NOL4	8715	broad.mit.edu	36	18	29777135	29777135	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	29777135	29777135	NOL4	18	T	T	C	58
SERPINB13	5275	broad.mit.edu	36	18	59411136	59411136	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	59411136	59411136	SERPINB13	18	C	C	T	23
TSHZ1	10194	broad.mit.edu	36	18	71127104	71127104	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	71127104	71127104	TSHZ1	18	A	A	T	7
MED26	9441	broad.mit.edu	36	19	16547872	16547872	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	16547872	16547872	MED26	19	C	C	T	27
NLRP11	204801	broad.mit.edu	36	19	60999347	60999347	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	60999347	60999347	NLRP11	19	C	C	G	29
ZNF773	374928	broad.mit.edu	36	19	62707958	62707958	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	62707958	62707958	ZNF773	19	C	C	A	26
TTC15	51112	broad.mit.edu	36	2	3448385	3448385	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3448385	3448385	TTC15	2	T	T	C	55
GLI2	2736	broad.mit.edu	36	2	121463541	121463541	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	121463541	121463541	GLI2	2	G	G	A	34
COL4A4	1286	broad.mit.edu	36	2	227651005	227651005	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	227651005	227651005	COL4A4	2	T	T	C	56
INSM1	3642	broad.mit.edu	36	20	20298306	20298306	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	20298306	20298306	INSM1	20	C	C	G	23
CST3	1471	broad.mit.edu	36	20	23563890	23563890	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	23563890	23563890	CST3	20	C	C	A	18
ZNF335	63925	broad.mit.edu	36	20	44030397	44030397	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44030397	44030397	ZNF335	20	C	C	G	17
SLC12A5	57468	broad.mit.edu	36	20	44111793	44111793	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	44111793	44111793	SLC12A5	20	G	G	A	42
STAC	6769	broad.mit.edu	36	3	36509724	36509724	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	36509724	36509724	STAC	3	C	C	T	27
PRKCI	5584	broad.mit.edu	36	3	171482391	171482391	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			T	G	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	171482391	171482391	PRKCI	3	T	T	G	51
CCNA2	890	broad.mit.edu	36	4	122961670	122961670	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			T	G	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	122961670	122961670	CCNA2	4	T	T	G	52
CDH9	1007	broad.mit.edu	36	5	26921537	26921537	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26921537	26921537	CDH9	5	C	C	T	28
PARP8	79668	broad.mit.edu	36	5	50164406	50164406	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	50164406	50164406	PARP8	5	C	C	T	19
WWC1	23286	broad.mit.edu	36	5	167824343	167824343	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	167824343	167824343	WWC1	5	G	G	A	40
ITPR3	3710	broad.mit.edu	36	6	33747782	33747782	+	Splice_Site_SNP	SNP	A	A	G	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	33747782	33747782	ITPR3	6	A	A	G	7
C6orf142	90523	broad.mit.edu	36	6	54097349	54097349	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	54097349	54097349	C6orf142	6	A	A	C	5
MTO1	25821	broad.mit.edu	36	6	74248501	74248501	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	74248501	74248501	MTO1	6	C	C	A	29
SYNE1	23345	broad.mit.edu	36	6	152818386	152818386	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	152818386	152818386	SYNE1	6	C	C	G	28
ZNF713	349075	broad.mit.edu	36	7	55958463	55958463	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	55958463	55958463	ZNF713	7	C	C	A	32
EYA1	2138	broad.mit.edu	36	8	72396627	72396627	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	72396627	72396627	EYA1	8	G	G	C	36
SON	6651	broad.mit.edu	36	21	33847482	33847505	+	In_Frame_Del	DEL	GTCCTGGAGTCTTCGGCTGTGACC	-	GTCCTGGAGTCTTCGGCTGTGACC	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	33847482	33847505	SON	21	GTCCTGGAGTCTTCGGCTGTGACC	-	GTCCTGGAGTCTTCGGCTGTGACC	48
SNRK	54861	broad.mit.edu	36	3	43364896	43364899	+	Frame_Shift_Del	DEL	CCAC	-	CCAC	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	43364896	43364899	SNRK	3	CCAC	-	CCAC	18
FOXO3	2309	broad.mit.edu	36	6	109092241	109092242	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-13-1487-01	TCGA-13-1487-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Ins	INS	109092241	109092242	FOXO3	6	-	C	-	52
