Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
BAI2	576	broad.mit.edu	36	1	31994493	31994493	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31994493	31994493	BAI2	1	G	G	T	35
KHDRBS1	10657	broad.mit.edu	36	1	32276782	32276782	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	32276782	32276782	KHDRBS1	1	G	G	A	37
ERMAP	114625	broad.mit.edu	36	1	43080955	43080955	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43080955	43080955	ERMAP	1	A	A	T	16
EIF2B3	8891	broad.mit.edu	36	1	45113910	45113910	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	45113910	45113910	EIF2B3	1	G	G	C	41
POMGNT1	55624	broad.mit.edu	36	1	46431602	46431602	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	46431602	46431602	POMGNT1	1	G	G	C	46
USP24	23358	broad.mit.edu	36	1	55363661	55363661	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55363661	55363661	USP24	1	A	A	T	12
SF3B4	10262	broad.mit.edu	36	1	148164355	148164355	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	148164355	148164355	SF3B4	1	G	G	A	41
ARHGEF11	9826	broad.mit.edu	36	1	155177816	155177816	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	155177816	155177816	ARHGEF11	1	A	A	T	6
FAM20B	9917	broad.mit.edu	36	1	177279714	177279714	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	177279714	177279714	FAM20B	1	G	G	A	41
KLHDC8A	55220	broad.mit.edu	36	1	203579005	203579005	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	203579005	203579005	KLHDC8A	1	G	G	C	47
USH2A	7399	broad.mit.edu	36	1	214447291	214447291	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	214447291	214447291	USH2A	1	C	C	T	20
VWA2	340706	broad.mit.edu	36	10	116027764	116027764	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	116027764	116027764	VWA2	10	G	G	T	34
MTG1	92170	broad.mit.edu	36	10	135082980	135082980	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	135082980	135082980	MTG1	10	G	G	C	46
ART5	116969	broad.mit.edu	36	11	3617997	3617997	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	3617997	3617997	ART5	11	G	G	A	37
ACCSL	390110	broad.mit.edu	36	11	44034203	44034203	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44034203	44034203	ACCSL	11	A	A	T	14
ATM	472	broad.mit.edu	36	11	107741029	107741029	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	107741029	107741029	ATM	11	A	A	G	16
DIXDC1	85458	broad.mit.edu	36	11	111361233	111361233	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	111361233	111361233	DIXDC1	11	G	G	A	44
MCAM	4162	broad.mit.edu	36	11	118687796	118687796	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	118687796	118687796	MCAM	11	C	C	G	27
CD163L1	283316	broad.mit.edu	36	12	7477313	7477313	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	7477313	7477313	CD163L1	12	A	A	G	11
PDE3A	5139	broad.mit.edu	36	12	20691141	20691141	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	20691141	20691141	PDE3A	12	G	G	C	36
KRT6A	3853	broad.mit.edu	36	12	51167847	51167847	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	51167847	51167847	KRT6A	12	C	C	A	28
MTUS2	23281	broad.mit.edu	36	13	28497077	28497077	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	28497077	28497077	MTUS2	13	T	T	C	56
MAB21L1	4081	broad.mit.edu	36	13	34947751	34947751	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	34947751	34947751	MAB21L1	13	T	T	G	52
NDFIP2	54602	broad.mit.edu	36	13	78993083	78993083	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	78993083	78993083	NDFIP2	13	T	T	A	57
OR6S1	341799	broad.mit.edu	36	14	20179490	20179490	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	20179490	20179490	OR6S1	14	G	G	C	44
MDGA2	161357	broad.mit.edu	36	14	46458974	46458974	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	46458974	46458974	MDGA2	14	G	G	T	46
ZC3H14	79882	broad.mit.edu	36	14	88109076	88109076	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	88109076	88109076	ZC3H14	14	G	G	C	33
HCN4	10021	broad.mit.edu	36	15	71422832	71422832	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	71422832	71422832	HCN4	15	A	A	T	3
UBE2Q2	92912	broad.mit.edu	36	15	73952823	73952823	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	73952823	73952823	UBE2Q2	15	G	G	T	35
ITFG1	81533	broad.mit.edu	36	16	46052298	46052298	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	46052298	46052298	ITFG1	16	C	C	A	23
TP53	7157	broad.mit.edu	36	17	7519221	7519221	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7519221	7519221	TP53	17	A	A	T	7
PER1	5187	broad.mit.edu	36	17	7992067	7992067	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7992067	7992067	PER1	17	G	G	C	44
ACLY	47	broad.mit.edu	36	17	37278556	37278556	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37278556	37278556	ACLY	17	G	G	C	34
NOTUM	147111	broad.mit.edu	36	17	77504235	77504235	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	77504235	77504235	NOTUM	17	C	C	A	29
ANKRD29	147463	broad.mit.edu	36	18	19472839	19472839	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	19472839	19472839	ANKRD29	18	A	A	C	1
ZNF57	126295	broad.mit.edu	36	19	2868849	2868849	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2868849	2868849	ZNF57	19	T	T	G	52
OR7D4	125958	broad.mit.edu	36	19	9185997	9185997	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	9185997	9185997	OR7D4	19	C	C	T	29
SMARCA4	6597	broad.mit.edu	36	19	10966512	10966512	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	10966512	10966512	SMARCA4	19	C	C	A	29
MLL4	9757	broad.mit.edu	36	19	40904188	40904188	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	40904188	40904188	MLL4	19	A	A	G	2
ATP1A3	478	broad.mit.edu	36	19	47164836	47164836	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47164836	47164836	ATP1A3	19	C	C	A	20
CACNG6	59285	broad.mit.edu	36	19	59207216	59207216	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	59207216	59207216	CACNG6	19	G	G	A	43
HEATR5B	54497	broad.mit.edu	36	2	37108713	37108713	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	37108713	37108713	HEATR5B	2	G	G	T	45
FAM161A	84140	broad.mit.edu	36	2	61920764	61920764	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	61920764	61920764	FAM161A	2	G	G	C	41
FER1L5	90342	broad.mit.edu	36	2	96727007	96727007	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	96727007	96727007	FER1L5	2	C	C	T	17
CCNT2	905	broad.mit.edu	36	2	135428333	135428333	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	135428333	135428333	CCNT2	2	G	G	A	34
DPP4	1803	broad.mit.edu	36	2	162589667	162589667	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	162589667	162589667	DPP4	2	C	C	T	26
ABCA12	26154	broad.mit.edu	36	2	215551883	215551883	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	215551883	215551883	ABCA12	2	A	A	G	4
MARCH4	57574	broad.mit.edu	36	2	216850783	216850783	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	216850783	216850783	MARCH4	2	G	G	C	42
FAM134A	79137	broad.mit.edu	36	2	219753079	219753079	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	219753079	219753079	FAM134A	2	G	G	C	35
PCSK2	5126	broad.mit.edu	36	20	17394023	17394023	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17394023	17394023	PCSK2	20	C	C	T	19
STAU1	6780	broad.mit.edu	36	20	47174417	47174417	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47174417	47174417	STAU1	20	C	C	T	27
GCNT4	51301	broad.mit.edu	36	5	74360422	74360422	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74360422	74360422	GCNT4	5	C	C	A	18
FBXO38	81545	broad.mit.edu	36	5	147775749	147775749	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	147775749	147775749	FBXO38	5	T	T	A	54
RUFY1	80230	broad.mit.edu	36	5	178945450	178945450	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	178945450	178945450	RUFY1	5	C	C	G	20
HIST1H1A	3024	broad.mit.edu	36	6	26125656	26125656	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	26125656	26125656	HIST1H1A	6	G	G	C	40
ZNF184	7738	broad.mit.edu	36	6	27527992	27527992	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27527992	27527992	ZNF184	6	C	C	G	22
GNL1	2794	broad.mit.edu	36	6	30629215	30629215	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	30629215	30629215	GNL1	6	A	A	G	11
SYTL3	94120	broad.mit.edu	36	6	159006487	159006487	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	159006487	159006487	SYTL3	6	G	G	C	36
DAGLB	221955	broad.mit.edu	36	7	6442674	6442674	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	6442674	6442674	DAGLB	7	G	G	A	35
EGFR	1956	broad.mit.edu	36	7	55240662	55240662	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	55240662	55240662	EGFR	7	A	A	G	5
CPA4	51200	broad.mit.edu	36	7	129737955	129737955	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	129737955	129737955	CPA4	7	C	C	A	21
AKR1B10L	441282	broad.mit.edu	36	7	133910733	133910733	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	133910733	133910733	AKR1B10L	7	G	G	A	37
ZNF746	155061	broad.mit.edu	36	7	148822461	148822461	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	148822461	148822461	ZNF746	7	G	G	A	37
GPR124	25960	broad.mit.edu	36	8	37809764	37809764	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	37809764	37809764	GPR124	8	G	G	C	43
HRSP12	10247	broad.mit.edu	36	8	99185949	99185949	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	99185949	99185949	HRSP12	8	C	C	G	32
POP1	10940	broad.mit.edu	36	8	99239036	99239036	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	99239036	99239036	POP1	8	G	G	A	45
FLJ43860	389690	broad.mit.edu	36	8	142514506	142514506	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	142514506	142514506	FLJ43860	8	C	C	T	17
AK3	50808	broad.mit.edu	36	9	4708447	4708447	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	4708447	4708447	AK3	9	G	G	C	47
PPP1R3F	89801	broad.mit.edu	36	X	49029240	49029240	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	49029240	49029240	PPP1R3F	23	G	G	C	44
CCNB3	85417	broad.mit.edu	36	X	50054721	50054721	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	50054721	50054721	CCNB3	23	G	G	A	39
MORC4	79710	broad.mit.edu	36	X	106091944	106091944	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	106091944	106091944	MORC4	23	T	T	A	60
MID2	11043	broad.mit.edu	36	X	106970864	106970864	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	106970864	106970864	MID2	23	C	C	T	31
COL4A6	1288	broad.mit.edu	36	X	107440712	107440712	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	107440712	107440712	COL4A6	23	T	T	A	54
GLDC	2731	broad.mit.edu	36	9	6544727	6544736	+	Frame_Shift_Del	DEL	GAAGATTTAG	-	GAAGATTTAG	novel	Unknown	TCGA-13-1501-01	TCGA-13-1501-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	6544727	6544736	GLDC	9	GAAGATTTAG	-	GAAGATTTAG	45
