Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	6564019	6564019	+	Intron	DEL	T	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7210838	7210840	+	Intron	DEL	TCC	-	-	rs111754952		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	9013459	9013459	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AAMP	14	broad.mit.edu	37	2	219134765	219134766	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASS	10157	broad.mit.edu	37	7	121733185	121733185	+	Silent	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215843639	215843639	+	Silent	SNP	T	C	C	rs35809021		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67270278	67270278	+	Intron	DEL	A	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67075414	67075414	+	Intron	DEL	A	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87151645	87151645	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87174155	87174155	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87180012	87180012	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20666136	20666136	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101604247	101604247	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48750509	48750509	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC4	10257	broad.mit.edu	37	13	95735306	95735306	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22015839	22015839	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG5	64240	broad.mit.edu	37	2	44052164	44052164	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG8	64241	broad.mit.edu	37	2	44079549	44079549	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD2	11057	broad.mit.edu	37	15	89698859	89698859	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148626008	148626008	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABP1	26	broad.mit.edu	37	7	150554366	150554366	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABTB2	25841	broad.mit.edu	37	11	34182595	34182595	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35444174	35444174	+	3'UTR	SNP	T	A	A	rs3214149		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89416277	89416277	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32014679	32014679	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT6	641372	broad.mit.edu	37	14	74083897	74083897	+	Splice_Site	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20482944	20482944	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA1	58	broad.mit.edu	37	1	229567937	229567937	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL6B	51412	broad.mit.edu	37	7	100252834	100252834	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236881119	236881119	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236894645	236894645	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21	8747	broad.mit.edu	37	14	70925650	70925650	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106623162	106623162	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106800506	106800506	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106825557	106825557	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107035201	107035201	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107087482	107087482	+	RNA	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107122328	107122328	+	RNA	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33658334	33658334	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43944677	43944677	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK1	57143	broad.mit.edu	37	14	78353513	78353513	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70901940	70901940	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70903899	70903899	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH4	127	broad.mit.edu	37	4	100063853	100063854	+	Frame_Shift_Ins	INS	-	G	G	rs61754858	byFrequency	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	87967184	87967184	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148038095	148038095	+	Silent	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148048255	148048255	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148055169	148055169	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148059872	148059872	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP4	119016	broad.mit.edu	37	10	46322003	46322003	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP6	414189	broad.mit.edu	37	10	51770011	51770011	+	3'UTR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86994434	86994434	+	Intron	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87468523	87468523	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL3	340351	broad.mit.edu	37	7	134719543	134719543	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49309821	49309821	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62297923	62297923	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSG	197	broad.mit.edu	37	3	186337578	186337578	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AICDA	57379	broad.mit.edu	37	12	8757303	8757303	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58492793	58492793	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1B1	219	broad.mit.edu	37	9	38396745	38396745	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR8	79800	broad.mit.edu	37	2	203831748	203831748	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMHR2	269	broad.mit.edu	37	12	53824052	53824052	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41519229	41519229	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114275193	114275193	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114278824	114278824	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKIB1	54467	broad.mit.edu	37	7	92017170	92017170	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95648786	95648787	+	Intron	DNP	CA	AG	AG			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD1	27063	broad.mit.edu	37	10	92679871	92679871	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95482866	95482866	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14799107	14799107	+	Silent	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14852041	14852041	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD36	375248	broad.mit.edu	37	2	97834529	97834529	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD49	54851	broad.mit.edu	37	11	94229854	94229855	+	5'UTR	INS	-	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99541606	99541606	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101316171	101316171	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32B	10541	broad.mit.edu	37	9	100767181	100767181	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANPEP	290	broad.mit.edu	37	15	90334395	90334395	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXRL	195977	broad.mit.edu	37	10	47700706	47700706	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36588327	36588327	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83332301	83332301	+	Intron	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7P1	375719	broad.mit.edu	37	9	67272463	67272463	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7P1	375719	broad.mit.edu	37	9	67273258	67273258	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36231049	36231049	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	143973045	143973045	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP25	9938	broad.mit.edu	37	2	69040776	69040776	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128839073	128839073	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11682955	11682955	+	5'UTR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156921173	156921173	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135754059	135754059	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1B	57492	broad.mit.edu	37	6	157517494	157517494	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID3C	138715	broad.mit.edu	37	9	34622422	34622422	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX3	51566	broad.mit.edu	37	X	100880242	100880242	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX5	64860	broad.mit.edu	37	X	101857109	101857109	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35729197	35729197	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35750437	35750437	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARR3	407	broad.mit.edu	37	X	69500516	69500516	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	2990216	2990216	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3030288	3030288	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AR	367	broad.mit.edu	37	X	66766619	66766619	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAM	79827	broad.mit.edu	37	11	122944291	122944291	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB15	142685	broad.mit.edu	37	7	123264718	123264718	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPN	54829	broad.mit.edu	37	9	95227369	95227369	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176983668	176983668	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119582901	119582901	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	120062088	120062088	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31320076	31320076	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2B	55102	broad.mit.edu	37	14	96794827	96794827	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG4A	115201	broad.mit.edu	37	X	107371905	107371905	+	Intron	DEL	A	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG4A	115201	broad.mit.edu	37	X	107397076	107397076	+	3'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG4B	23192	broad.mit.edu	37	2	242594615	242594616	+	Intron	DNP	GG	TT	TT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138869417	138869418	+	Intron	INS	-	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119509423	119509423	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36045890	36045890	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77298315	77298315	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77298317	77298317	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9A	10079	broad.mit.edu	37	20	50287569	50287570	+	Intron	INS	-	AG	AG			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142281403	142281403	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN7	6314	broad.mit.edu	37	3	63976117	63976117	+	Intron	SNP	C	T	T	rs139396106	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVL9	23080	broad.mit.edu	37	7	32956876	32956876	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AWAT1	158833	broad.mit.edu	37	X	69455988	69455988	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GAT2	135152	broad.mit.edu	37	6	71571537	71571537	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT2	124872	broad.mit.edu	37	17	47243516	47243517	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACE2	25825	broad.mit.edu	37	21	42647496	42647496	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11039060	11039060	+	3'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11044426	11044426	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11059131	11059131	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11059289	11059289	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11071419	11071419	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11074967	11074967	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11075446	11075446	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI2	576	broad.mit.edu	37	1	32222001	32222001	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70071172	70071172	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31603426	31603426	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS2	583	broad.mit.edu	37	16	56531833	56531833	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCCIP	56647	broad.mit.edu	37	10	127512031	127512031	+	5'Flank	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL6	604	broad.mit.edu	37	3	187442985	187442985	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL9	607	broad.mit.edu	37	1	147016176	147016179	+	Intron	DEL	CTCT	-	-	rs113842878		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST3	144453	broad.mit.edu	37	12	70070771	70070771	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLZF1	8548	broad.mit.edu	37	1	169352886	169352886	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP1	649	broad.mit.edu	37	8	22051898	22051898	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP6	654	broad.mit.edu	37	6	7861863	7861863	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP6	654	broad.mit.edu	37	6	7862664	7862664	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	95894255	95894255	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCC3	79184	broad.mit.edu	37	X	154317508	154317508	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRS3	680	broad.mit.edu	37	X	135570738	135570738	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79936786	79936786	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79936893	79936893	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79975018	79975018	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A3	10384	broad.mit.edu	37	6	26448982	26448982	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL8	79908	broad.mit.edu	37	5	180326273	180326273	+	5'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf11	83938	broad.mit.edu	37	10	77818332	77818332	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf76	79591	broad.mit.edu	37	10	103649278	103649278	+	Intron	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33628275	33628275	+	Silent	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf66	220004	broad.mit.edu	37	11	61253281	61253281	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf74	119710	broad.mit.edu	37	11	36680778	36680778	+	3'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf82	220042	broad.mit.edu	37	11	82644076	82644076	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf148	122945	broad.mit.edu	37	14	77873817	77873817	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf55	256646	broad.mit.edu	37	15	34640442	34640442	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf75	116028	broad.mit.edu	37	16	11444629	11444629	+	Silent	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf2	56651	broad.mit.edu	37	18	1362831	1362831	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf2	56651	broad.mit.edu	37	18	1363183	1363183	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30834600	30834600	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30499946	30499946	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf44	84167	broad.mit.edu	37	19	16611814	16611814	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51769231	51769231	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf107	27042	broad.mit.edu	37	1	210004486	210004486	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf141	400757	broad.mit.edu	37	1	67558976	67558976	+	Silent	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57202688	57202688	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55174633	55174633	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf26	54823	broad.mit.edu	37	1	185195994	185195994	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9510208	9510208	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf185	359710	broad.mit.edu	37	20	31660375	31660375	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20232504	20232504	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf72	92667	broad.mit.edu	37	20	17950904	17950904	+	Silent	SNP	C	A	A	rs145801798		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf63	130162	broad.mit.edu	37	2	55436623	55436623	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf1	51300	broad.mit.edu	37	3	119232532	119232532	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf30	152405	broad.mit.edu	37	3	118870190	118870190	+	3'UTR	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113541202	113541202	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf34	201895	broad.mit.edu	37	4	39606740	39606740	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41158703	41158703	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41159470	41159470	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41164189	41164189	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165715321	165715321	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	47872275	47872275	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf58	352999	broad.mit.edu	37	6	127898668	127898668	+	Intron	SNP	C	T	T	rs117572080	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40234490	40234491	+	Intron	DNP	TG	GT	GT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40889582	40889582	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39285368	39285368	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf102	375748	broad.mit.edu	37	9	98643717	98643717	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACHD1	57685	broad.mit.edu	37	1	65117772	65117772	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2764299	2764299	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2794920	2794920	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181480071	181480071	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81589186	81589186	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54537415	54537415	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB4	785	broad.mit.edu	37	2	152830089	152830089	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG4	27092	broad.mit.edu	37	17	65028026	65028026	+	3'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALB1	793	broad.mit.edu	37	8	91075233	91075233	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALHM1	255022	broad.mit.edu	37	10	105215148	105215148	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2A	815	broad.mit.edu	37	5	149636358	149636358	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKV	79012	broad.mit.edu	37	3	49899116	49899116	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMP	820	broad.mit.edu	37	3	48265844	48265844	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7540373	7540374	+	Intron	DEL	AA	-	-	rs12753184	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP5	838	broad.mit.edu	37	11	104871220	104871220	+	Silent	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAV3	859	broad.mit.edu	37	3	8787364	8787364	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBWD3	445571	broad.mit.edu	37	9	70490098	70490098	+	5'UTR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1B	200014	broad.mit.edu	37	1	52827271	52827271	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219892638	219892638	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31682379	31682379	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC13	152206	broad.mit.edu	37	3	42784550	42784550	+	Splice_Site	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC148	130940	broad.mit.edu	37	2	159281742	159281742	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC155	147872	broad.mit.edu	37	19	49901271	49901271	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC38	120935	broad.mit.edu	37	12	96292327	96292327	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC42	146849	broad.mit.edu	37	17	8644891	8644891	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC52	152185	broad.mit.edu	37	3	113212901	113212901	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC52	152185	broad.mit.edu	37	3	113213060	113213060	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32632877	32632877	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC85A	114800	broad.mit.edu	37	2	56491041	56491041	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC97	90324	broad.mit.edu	37	19	41822539	41822539	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC99	54908	broad.mit.edu	37	5	169023733	169023733	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCIN	881	broad.mit.edu	37	9	36171016	36171016	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL28	56477	broad.mit.edu	37	5	43388579	43388579	+	Splice_Site	SNP	C	A	A	rs78470036		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB3	85417	broad.mit.edu	37	X	50053674	50053674	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB3	85417	broad.mit.edu	37	X	50089666	50089666	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT7	10574	broad.mit.edu	37	2	73467575	73467575	+	Silent	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072422	17072422	+	Missense_Mutation	SNP	G	T	T	rs148571019		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD226	10666	broad.mit.edu	37	18	67590423	67590424	+	Intron	INS	-	AAGG	AAGG	rs148340090	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD40LG	959	broad.mit.edu	37	X	135738610	135738610	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD40	958	broad.mit.edu	37	20	44757607	44757607	+	Silent	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD8B	926	broad.mit.edu	37	2	87085255	87085255	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD99L2	83692	broad.mit.edu	37	X	149984762	149984762	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD99L2	83692	broad.mit.edu	37	X	149984764	149984764	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25B	994	broad.mit.edu	37	20	3782099	3782099	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227218937	227218938	+	Intron	DNP	CC	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227219179	227219179	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24535164	24535165	+	Intron	DEL	TG	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21802193	21802193	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883798	21883798	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19483704	19483704	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19483744	19483744	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44879714	44879714	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44891152	44891152	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44910757	44910757	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73200551	73200551	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73498249	73498249	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31316365	31316365	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31323217	31323217	+	Silent	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK14	5218	broad.mit.edu	37	7	90400304	90400304	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA1	1990	broad.mit.edu	37	12	51733776	51733776	+	Silent	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF3	11189	broad.mit.edu	37	1	151678486	151678486	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPQ	55166	broad.mit.edu	37	6	49440482	49440482	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP170	9859	broad.mit.edu	37	1	243362482	243362482	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CERKL	375298	broad.mit.edu	37	2	182514868	182514868	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFL2	1073	broad.mit.edu	37	14	35182632	35182632	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB	1082	broad.mit.edu	37	19	49551698	49551698	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50824265	50824265	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD6	84303	broad.mit.edu	37	3	126449353	126449353	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40081214	40081214	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40151030	40151031	+	Intron	DEL	CG	-	-	rs140116884		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHEK1	1111	broad.mit.edu	37	11	125505257	125505257	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHM	1121	broad.mit.edu	37	X	85158768	85158768	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	240072406	240072406	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB4	1143	broad.mit.edu	37	15	78917468	78917468	+	3'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRND	1144	broad.mit.edu	37	2	233394818	233394818	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CILP	8483	broad.mit.edu	37	15	65501959	65501959	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKMT2	1160	broad.mit.edu	37	5	80550258	80550258	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLASP1	23332	broad.mit.edu	37	2	122215209	122215209	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLASP2	23122	broad.mit.edu	37	3	33540177	33540177	+	Silent	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143020377	143020377	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN17	26285	broad.mit.edu	37	21	31538874	31538874	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC12B	387837	broad.mit.edu	37	12	10168176	10168176	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC5A	23601	broad.mit.edu	37	7	141643895	141643895	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC7A	64581	broad.mit.edu	37	12	10280406	10280406	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN1	22883	broad.mit.edu	37	1	9811657	9811657	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140151003	140151003	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140178690	140178690	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTCL1	8218	broad.mit.edu	37	22	19210312	19210312	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS2	134829	broad.mit.edu	37	6	123369765	123369765	+	Splice_Site	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMA1	1215	broad.mit.edu	37	14	24976710	24976710	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMAH	8418	broad.mit.edu	37	6	25140291	25140291	+	5'Flank	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMKLR1	1240	broad.mit.edu	37	12	108686630	108686630	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMTM1	113540	broad.mit.edu	37	16	66600377	66600377	+	5'UTR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	87878769	87878769	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150911174	150911174	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87606749	87606749	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87755832	87755832	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTF	1270	broad.mit.edu	37	11	58391337	58391337	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	2778014	2778014	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP1	8506	broad.mit.edu	37	17	40839964	40839964	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146984697	146984698	+	Intron	INS	-	G	G	rs147257062	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146997190	146997190	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125545129	125545129	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125655018	125655018	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBL	23242	broad.mit.edu	37	7	51258706	51258706	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103405970	103405970	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103453184	103453185	+	Intron	DNP	CC	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103544265	103544265	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71716831	71716831	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121238797	121238797	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121292451	121292451	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121295758	121295758	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32164183	32164183	+	Silent	SNP	C	T	T	rs76478494	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70744137	70744137	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139872502	139872502	+	Intron	SNP	G	T	T	rs149984632	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86453278	86453278	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109810494	109810494	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	117063836	117063836	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107811887	107811887	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107930822	107930822	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107405936	107405936	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107486545	107486546	+	Intron	INS	-	A	A	rs5903314		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189957113	189957113	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A2	1292	broad.mit.edu	37	21	47546380	47546380	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130279403	130279403	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48609589	48609589	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48621469	48621469	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A2	1298	broad.mit.edu	37	1	40773211	40773211	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC11	78989	broad.mit.edu	37	2	3691618	3691618	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211465284	211465284	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211528397	211528397	+	Intron	DEL	C	-	-	rs3217218		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207830486	207830486	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36692029	36692029	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP1	167	broad.mit.edu	37	6	49825141	49825141	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRP	1401	broad.mit.edu	37	1	159683718	159683718	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAC1	55118	broad.mit.edu	37	10	99655247	99655247	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1414403	1414403	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF3R	1441	broad.mit.edu	37	1	36932411	36932411	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3046498	3046498	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34261934	34261934	+	Intron	SNP	C	A	A	rs150238846	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34403490	34403490	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34617228	34617228	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113243919	113243919	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113259218	113259218	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN3	1448	broad.mit.edu	37	4	71114782	71114782	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST2	1470	broad.mit.edu	37	20	23804646	23804646	+	3'UTR	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST9	128822	broad.mit.edu	37	20	23584161	23584161	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	69281660	69281660	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNB1	1499	broad.mit.edu	37	3	41268677	41268678	+	Intron	DEL	AT	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND1	1500	broad.mit.edu	37	11	57571070	57571070	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CX3CL1	6376	broad.mit.edu	37	16	57416912	57416912	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf26	51260	broad.mit.edu	37	X	75396667	75396667	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf27	25763	broad.mit.edu	37	X	37850383	37850383	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf64	100130613	broad.mit.edu	37	X	125955175	125955175	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYBB	1536	broad.mit.edu	37	X	37652816	37652816	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYGB	114757	broad.mit.edu	37	17	74533541	74533541	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC1	1538	broad.mit.edu	37	X	83127978	83127978	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26A1	1592	broad.mit.edu	37	10	94836521	94836521	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41532949	41532949	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A7	1551	broad.mit.edu	37	7	99319826	99319826	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4A11	1579	broad.mit.edu	37	1	47395734	47395734	+	3'UTR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F11	57834	broad.mit.edu	37	19	16025517	16025517	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F11	57834	broad.mit.edu	37	19	16038331	16038331	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTIP	9595	broad.mit.edu	37	2	158291002	158291002	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK2	23604	broad.mit.edu	37	15	64320965	64320965	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	122017692	122017692	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBH	1621	broad.mit.edu	37	9	136501612	136501612	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88885200	88885200	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF6	55827	broad.mit.edu	37	1	167960554	167960554	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36383060	36383060	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLRE1A	9937	broad.mit.edu	37	10	115609684	115609684	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDB1	1642	broad.mit.edu	37	11	61077628	61077628	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162745598	162745598	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX25	29118	broad.mit.edu	37	11	125780288	125780288	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX4	54514	broad.mit.edu	37	5	55075873	55075873	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEC1	50514	broad.mit.edu	37	9	118162849	118162849	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEC1	50514	broad.mit.edu	37	9	118163341	118163342	+	Intron	DNP	GG	TT	TT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB115	245929	broad.mit.edu	37	20	29845664	29845664	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB119	245932	broad.mit.edu	37	20	29978412	29978412	+	5'Flank	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1A	57706	broad.mit.edu	37	9	126288472	126288472	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197641096	197641096	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140223132	140223132	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14722411	14722411	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50131476	50131476	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHCR24	1718	broad.mit.edu	37	1	55319744	55319744	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX32	55760	broad.mit.edu	37	10	127578731	127578731	+	Intron	SNP	A	G	G	rs150291239		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61542314	61542314	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO2	1734	broad.mit.edu	37	14	80677673	80677673	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	108178994	108178994	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83445398	83445398	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83497874	83497874	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79580869	79580869	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3580689	3580689	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11593663	11593663	+	Silent	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJA3	9093	broad.mit.edu	37	16	4492463	4492463	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNER	92737	broad.mit.edu	37	2	230456283	230456283	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM3	26052	broad.mit.edu	37	1	171821968	171821968	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3L	29947	broad.mit.edu	37	21	45670639	45670639	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTTIP2	30836	broad.mit.edu	37	1	94344724	94344724	+	5'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225658116	225658116	+	Splice_Site	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169477278	169477278	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	50824396	50824396	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37650200	37650200	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	153959213	153959213	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L1	23333	broad.mit.edu	37	7	34985224	34985224	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	64061933	64061933	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L3	147991	broad.mit.edu	37	19	32970484	32970484	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117428976	117428976	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117553109	117553109	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7583538	7583538	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32335960	32335960	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102474633	102474633	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102502947	102502947	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1	22873	broad.mit.edu	37	13	96239622	96239622	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDNRB	1910	broad.mit.edu	37	13	78477707	78477708	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB4B	84766	broad.mit.edu	37	12	3775891	3775891	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38458524	38458524	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGLN3	112399	broad.mit.edu	37	14	34395076	34395076	+	3'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK4	440275	broad.mit.edu	37	15	40226638	40226638	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3B	8662	broad.mit.edu	37	7	2414036	2414036	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3IP1	442720	broad.mit.edu	37	7	109599576	109599576	+	3'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3IP1	442720	broad.mit.edu	37	7	109599592	109599592	+	3'UTR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37052089	37052089	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR1	2015	broad.mit.edu	37	19	6921811	6921811	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOSF1	55556	broad.mit.edu	37	18	691265	691265	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111470556	111470556	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP5	59084	broad.mit.edu	37	6	46129366	46129366	+	Silent	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46538024	46538025	+	Intron	INS	-	T	T	rs141655081	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34778240	34778240	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L2	2037	broad.mit.edu	37	6	131186653	131186653	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38227328	38227328	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66217200	66217200	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97251372	97251372	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93956666	93956666	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93967898	93967898	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134670058	134670058	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134670328	134670328	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8L3	79574	broad.mit.edu	37	1	110304322	110304322	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN2	10595	broad.mit.edu	37	16	23718103	23718103	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV5	2119	broad.mit.edu	37	3	185798928	185798928	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVX2	344191	broad.mit.edu	37	2	176948324	176948324	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC3L	283849	broad.mit.edu	37	16	67220986	67220986	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOSC10	5394	broad.mit.edu	37	1	11159895	11159895	+	5'UTR	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT1	2131	broad.mit.edu	37	8	118819684	118819684	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133767992	133767992	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66013900	66013900	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66104062	66104062	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F10	2159	broad.mit.edu	37	13	113798342	113798342	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6248675	6248675	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154088834	154088834	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154132396	154132396	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154250903	154250903	+	5'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP12	646486	broad.mit.edu	37	8	82441714	82441714	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP6	2172	broad.mit.edu	37	5	159650389	159650389	+	Intron	SNP	C	T	T	rs71579117		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAIM2	23017	broad.mit.edu	37	12	50288199	50288199	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM105A	54491	broad.mit.edu	37	5	14601255	14601255	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A2	10827	broad.mit.edu	37	5	153377264	153377264	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A2	10827	broad.mit.edu	37	5	153406765	153406765	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120C	54954	broad.mit.edu	37	X	54112423	54112423	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123B	139285	broad.mit.edu	37	X	63411303	63411303	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM134B	54463	broad.mit.edu	37	5	16475022	16475022	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135A	57579	broad.mit.edu	37	6	71269450	71269450	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139255092	139255092	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13A	10144	broad.mit.edu	37	4	89950666	89950666	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61068298	61068298	+	Intron	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM149A	25854	broad.mit.edu	37	4	187075718	187075718	+	Silent	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM168B	130074	broad.mit.edu	37	2	131829603	131829603	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM181A	90050	broad.mit.edu	37	14	94391751	94391751	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A1	407738	broad.mit.edu	37	3	68119040	68119040	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62415840	62415840	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10675214	10675214	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34148219	34148219	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177155694	177155694	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	11987083	11987083	+	Intron	SNP	C	G	G	rs143297471	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12399175	12399175	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156590312	156590312	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43626714	43626715	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75C1	441452	broad.mit.edu	37	9	90536927	90536927	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM82B	51115	broad.mit.edu	37	8	87498840	87498840	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM86C	55199	broad.mit.edu	37	11	71504425	71504425	+	Splice_Site	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163037994	163037994	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASLG	356	broad.mit.edu	37	1	172633365	172633365	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48782324	48782324	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127668831	127668831	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15769260	15769260	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15937326	15937326	+	3'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO3	26273	broad.mit.edu	37	11	33772068	33772068	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2C	9103	broad.mit.edu	37	1	161559177	161559177	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHSD2	9873	broad.mit.edu	37	11	72726866	72726866	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL6	343413	broad.mit.edu	37	1	159777723	159777723	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL6	343413	broad.mit.edu	37	1	159779445	159779445	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124982158	124982158	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125022630	125022630	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125351303	125351303	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	137939894	137939894	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR4	2264	broad.mit.edu	37	5	176522357	176522357	+	Missense_Mutation	SNP	G	A	A	rs34158682		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHIT	2272	broad.mit.edu	37	3	60814814	60814814	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL1	2273	broad.mit.edu	37	X	135290730	135290730	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34179946	34179946	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34298194	34298194	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIGN	55137	broad.mit.edu	37	2	164468385	164468385	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152326871	152326871	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152327811	152327811	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152275520	152275520	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152279608	152279609	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152283465	152283465	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLI1	2313	broad.mit.edu	37	11	128564099	128564099	+	Translation_Start_Site	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40330	645784	broad.mit.edu	37	2	89096906	89096906	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43950	347127	broad.mit.edu	37	9	84534432	84534432	+	3'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128479978	128479978	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240497607	240497607	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL2	114793	broad.mit.edu	37	2	153259323	153259323	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1NB	158521	broad.mit.edu	37	X	147084781	147084781	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1NB	158521	broad.mit.edu	37	X	147088156	147088156	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXL1	2300	broad.mit.edu	37	16	86612523	86612523	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXO1	2308	broad.mit.edu	37	13	41070339	41070340	+	Intron	INS	-	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXR1	283150	broad.mit.edu	37	11	118849735	118849735	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR1	2357	broad.mit.edu	37	19	52250185	52250185	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79207482	79207482	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79417957	79417957	+	Splice_Site	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39454433	39454433	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29649922	29649922	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD1	79981	broad.mit.edu	37	6	168476129	168476129	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD5	84978	broad.mit.edu	37	15	44282099	44282099	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37744267	37744267	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12722586	12722586	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162463754	162463754	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD2	23070	broad.mit.edu	37	6	37445234	37445234	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXN	2395	broad.mit.edu	37	9	71687583	71687583	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD4	8322	broad.mit.edu	37	11	86662549	86662549	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G6PD	2539	broad.mit.edu	37	X	153762748	153762748	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	27138984	27138984	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRE	2564	broad.mit.edu	37	X	151123779	151123780	+	Intron	DNP	CC	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151820033	151820033	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26508009	26508009	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT10	55568	broad.mit.edu	37	5	153717034	153717034	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	154875932	154875932	+	Intron	SNP	G	A	A	rs147743324	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155115588	155115588	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT8	26290	broad.mit.edu	37	12	4870418	4870418	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11643012	11643013	+	In_Frame_Ins	INS	-	GGG	GGG			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	172986439	172986439	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GARNL3	84253	broad.mit.edu	37	9	130116205	130116205	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9823044	9823044	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9901161	9901161	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATS	352954	broad.mit.edu	37	7	99869494	99869494	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBAP1	2630	broad.mit.edu	37	1	155184512	155184512	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBE1	2632	broad.mit.edu	37	3	81578932	81578932	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDA	9615	broad.mit.edu	37	9	74837977	74837977	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF5	8200	broad.mit.edu	37	20	34025047	34025047	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDI1	2664	broad.mit.edu	37	X	153670677	153670677	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55223617	55223617	+	Intron	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55266660	55266660	+	3'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT7	2686	broad.mit.edu	37	20	33444618	33444618	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT8P	645367	broad.mit.edu	37	2	91968873	91968873	+	RNA	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIF	2694	broad.mit.edu	37	11	59609961	59609961	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP1	170575	broad.mit.edu	37	7	150417174	150417174	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIT2	9815	broad.mit.edu	37	12	110429410	110429410	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLA	2717	broad.mit.edu	37	X	100658672	100658672	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6556186	6556186	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLE1	2733	broad.mit.edu	37	9	131271368	131271368	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIPR1	11010	broad.mit.edu	37	12	75884364	75884365	+	Intron	DEL	AA	-	-	rs146756328		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLS	2744	broad.mit.edu	37	2	191819686	191819686	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58604808	58604808	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GM2A	2760	broad.mit.edu	37	5	150760042	150760042	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG11	2791	broad.mit.edu	37	7	93555527	93555527	+	Silent	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA6C	653641	broad.mit.edu	37	15	75555890	75555890	+	Intron	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8C	729786	broad.mit.edu	37	15	20777826	20777826	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20327418	20327418	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC3	2719	broad.mit.edu	37	X	133087439	133087439	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176777567	176777567	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135427340	135427340	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135427841	135427841	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR141	353345	broad.mit.edu	37	7	37780805	37780805	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR156	165829	broad.mit.edu	37	3	119905559	119905559	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR156	165829	broad.mit.edu	37	3	119935581	119935581	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR174	84636	broad.mit.edu	37	X	78426599	78426599	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR64	10149	broad.mit.edu	37	X	19045212	19045212	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRIN1	114787	broad.mit.edu	37	5	176025350	176025350	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1A	57655	broad.mit.edu	37	19	35501114	35501114	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123489532	123489532	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB7	2886	broad.mit.edu	37	17	37903138	37903138	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158283987	158283987	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA3	2892	broad.mit.edu	37	X	122387081	122387081	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	93743739	93743739	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94436331	94436331	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104390432	104390432	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104432502	104432502	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK5	2869	broad.mit.edu	37	10	121207709	121207709	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146351044	146351044	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM3	2913	broad.mit.edu	37	7	86493507	86493507	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88386591	88386591	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126085984	126085984	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126173116	126173116	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTSE1	51512	broad.mit.edu	37	22	46704789	46704789	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA2B	2981	broad.mit.edu	37	1	42620549	42620549	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA2B	2981	broad.mit.edu	37	1	42620590	42620590	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106697123	106697123	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2C	2984	broad.mit.edu	37	12	14827455	14827455	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108618974	108618975	+	Intron	DNP	GG	TT	TT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPC	2995	broad.mit.edu	37	2	127447686	127447686	+	Intron	SNP	G	A	A	rs55988600		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMK	3003	broad.mit.edu	37	5	54327100	54327100	+	Intron	SNP	G	A	A	rs140825158	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45353354	45353354	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC8	55869	broad.mit.edu	37	X	71684338	71684339	+	Intron	DNP	CC	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC8	55869	broad.mit.edu	37	X	71787903	71787903	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18633750	18633750	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18819895	18819895	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	19018035	19018035	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD2	143279	broad.mit.edu	37	10	93260329	93260329	+	Missense_Mutation	SNP	G	C	C	rs111679609		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43477795	43477795	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEMGN	55363	broad.mit.edu	37	9	100689761	100689761	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93797496	93797496	+	Splice_Site	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65419004	65419004	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65486237	65486237	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIP	64399	broad.mit.edu	37	4	145628274	145628274	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIPK2	28996	broad.mit.edu	37	7	139288933	139288933	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H4D	8360	broad.mit.edu	37	6	26189055	26189055	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP1	3096	broad.mit.edu	37	6	12124121	12124121	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29864594	29864594	+	Intron	SNP	T	C	C	rs115939242	byFrequency;by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLTF	6596	broad.mit.edu	37	3	148764045	148764045	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGN5	79366	broad.mit.edu	37	X	80371621	80371621	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA3	3200	broad.mit.edu	37	7	27149875	27149875	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD3	3232	broad.mit.edu	37	2	177033966	177033966	+	Missense_Mutation	SNP	G	A	A	rs138422926	byFrequency	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH2	3274	broad.mit.edu	37	5	175110088	175110088	+	5'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST3B1	9953	broad.mit.edu	37	17	14205337	14205337	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	25881844	25881844	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26044058	26044058	+	Intron	SNP	G	T	T	rs150536058	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114383950	114383950	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD11B1	3290	broad.mit.edu	37	1	209874938	209874938	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA4L	22824	broad.mit.edu	37	4	128744825	128744825	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPD1	3329	broad.mit.edu	37	2	198358265	198358265	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATSF1	27336	broad.mit.edu	37	X	135593890	135593890	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1B	3351	broad.mit.edu	37	6	78172078	78172078	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2A	3356	broad.mit.edu	37	13	47469742	47469742	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	113858185	113858185	+	Intron	DEL	T	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	113865593	113865593	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR5A	3361	broad.mit.edu	37	7	154863018	154863018	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR5A	3361	broad.mit.edu	37	7	154876139	154876139	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYOU1	10525	broad.mit.edu	37	11	118921762	118921762	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH3G	3421	broad.mit.edu	37	X	153053076	153053076	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDO2	169355	broad.mit.edu	37	8	39847362	39847362	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDS	3423	broad.mit.edu	37	X	148586155	148586155	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFLTD1	160492	broad.mit.edu	37	12	25672901	25672901	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA14	3448	broad.mit.edu	37	9	21231729	21231729	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA14	3448	broad.mit.edu	37	9	21231827	21231827	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFRD1	3475	broad.mit.edu	37	7	112090931	112090931	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99250729	99250729	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47122408	47122408	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFL1	374918	broad.mit.edu	37	19	46733027	46733027	+	5'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130410305	130410305	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130416704	130416704	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104650771	104650771	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104886211	104886211	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	105011536	105011536	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL26	55801	broad.mit.edu	37	12	68595782	68595782	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL5RA	3568	broad.mit.edu	37	3	3143587	3143587	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING3	54556	broad.mit.edu	37	7	120607861	120607861	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41729829	41729829	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO8	10526	broad.mit.edu	37	12	30827041	30827041	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCJ	654502	broad.mit.edu	37	3	158983086	158983086	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75954465	75954465	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC2	23096	broad.mit.edu	37	X	53267402	53267402	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123105155	123105156	+	Intron	DNP	CC	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF4	3662	broad.mit.edu	37	6	397185	397185	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15760935	15760935	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31422329	31422329	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187529044	187529044	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7657932	7657932	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN2	50618	broad.mit.edu	37	2	24531428	24531432	+	Intron	DEL	AGTGG	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN2	50618	broad.mit.edu	37	2	24531441	24531441	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK1	3716	broad.mit.edu	37	1	65303784	65303784	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD8	84541	broad.mit.edu	37	3	67053833	67053833	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111145889	111145889	+	3'UTR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	120373105	120373105	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND3	3752	broad.mit.edu	37	1	112524390	112524390	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211034962	211034962	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH4	23415	broad.mit.edu	37	17	40330185	40330185	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163419840	163419840	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	169780838	169780838	+	5'Flank	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	169898705	169898705	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ10	3766	broad.mit.edu	37	1	160012018	160012018	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215408511	215408511	+	3'UTR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK9	51305	broad.mit.edu	37	8	140630830	140630830	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK9	51305	broad.mit.edu	37	8	140630832	140630832	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154744596	154744596	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNS2	3788	broad.mit.edu	37	8	99441529	99441529	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196309515	196309515	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44266874	44266874	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	6984340	6984340	+	Silent	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53225784	53225784	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55972875	55972875	+	Silent	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142661269	142661269	+	5'Flank	SNP	G	T	T	rs142896348		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS2	202559	broad.mit.edu	37	6	62604607	62604607	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS3	10656	broad.mit.edu	37	8	136657371	136657371	+	Intron	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0494	9813	broad.mit.edu	37	1	47162396	47162396	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42501195	42501195	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0748	9840	broad.mit.edu	37	12	55344741	55344742	+	Intron	DEL	TC	-	-	rs74928482		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0802	23255	broad.mit.edu	37	18	8819248	8819248	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1199	57214	broad.mit.edu	37	15	81171177	81171177	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94053361	94053361	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94084621	94084621	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94089145	94089145	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94129095	94129095	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95523891	95523891	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95541452	95541452	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43481291	43481291	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8940715	8940715	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF11	3832	broad.mit.edu	37	10	94373192	94373192	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245645580	245645581	+	Intron	INS	-	G	G	rs141850727	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4A	24137	broad.mit.edu	37	X	69595841	69595841	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39563849	39563849	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158047416	158047416	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIT	3815	broad.mit.edu	37	4	55561740	55561740	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL24	54800	broad.mit.edu	37	3	183382794	183382794	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL2	11275	broad.mit.edu	37	4	166219024	166219025	+	Intron	DNP	GG	TT	TT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152733823	152733823	+	3'UTR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152733877	152733877	+	3'UTR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT25	147183	broad.mit.edu	37	17	38907509	38907509	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38956215	38956215	+	5'Flank	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT36	8689	broad.mit.edu	37	17	39643457	39643457	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT36	8689	broad.mit.edu	37	17	39644763	39644763	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT72	140807	broad.mit.edu	37	12	52992582	52992582	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP24-1	643803	broad.mit.edu	37	21	31654512	31654512	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP9-9	81870	broad.mit.edu	37	17	39388597	39388597	+	5'Flank	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTDAP	388533	broad.mit.edu	37	19	35979475	35979475	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129634381	129634381	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209797177	209797177	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107710115	107710115	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107746206	107746206	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LANCL2	55915	broad.mit.edu	37	7	55468883	55468883	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAS1L	81887	broad.mit.edu	37	X	64749020	64749020	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE1B	353132	broad.mit.edu	37	1	152785398	152785398	+	3'UTR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCLAT1	253558	broad.mit.edu	37	2	30841837	30841838	+	Intron	DEL	TG	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP1	3936	broad.mit.edu	37	13	46758669	46758669	+	5'Flank	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHD	197257	broad.mit.edu	37	16	75147927	75147927	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPROT	54741	broad.mit.edu	37	1	65895708	65895708	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202288055	202288055	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL1	340596	broad.mit.edu	37	X	111914783	111914783	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75602868	75602868	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75606693	75606693	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA6	79168	broad.mit.edu	37	19	54772800	54772800	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55176016	55176016	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMCH1	22998	broad.mit.edu	37	4	41673202	41673202	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	27991568	27991568	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	27999278	27999278	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	28148448	28148448	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD2	92255	broad.mit.edu	37	5	36105365	36105365	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100101266	100101266	broad.mit.edu	37	19	24345771	24345771	+	RNA	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090281	238090281	+	RNA	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133991	100133991	broad.mit.edu	37	17	43331672	43331672	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC145845	145845	broad.mit.edu	37	15	37172629	37172629	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148000718	148000718	+	Intron	SNP	G	A	A	rs145915343	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283050	283050	broad.mit.edu	37	10	80735857	80735857	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283922	283922	broad.mit.edu	37	16	74372915	74372915	+	Intron	DEL	T	-	-	rs67181940		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285692	285692	broad.mit.edu	37	5	9749404	9749404	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC399959	399959	broad.mit.edu	37	11	121970343	121970343	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC399959	399959	broad.mit.edu	37	11	121975675	121975676	+	Intron	DNP	GG	TT	TT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC399959	399959	broad.mit.edu	37	11	122049735	122049735	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49831322	49831322	+	3'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC643486	643486	broad.mit.edu	37	X	95592526	95592526	+	RNA	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148943829	148943829	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148946884	148946884	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148947925	148947925	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148950676	148950676	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148951302	148951302	+	RNA	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647946	647946	broad.mit.edu	37	18	37091793	37091793	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC651250	651250	broad.mit.edu	37	17	66147832	66147832	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91810667	91810668	+	Intron	INS	-	T	T	rs138669114		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91820087	91820087	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91820817	91820817	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91846556	91846556	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22533464	22533464	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22721838	22721838	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23135161	23135161	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONRF3	79836	broad.mit.edu	37	X	118123451	118123451	+	Silent	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONRF3	79836	broad.mit.edu	37	X	118148390	118148390	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONRF3	79836	broad.mit.edu	37	X	118151704	118151704	+	3'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOXL3	84695	broad.mit.edu	37	2	74762948	74762948	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAR1	1902	broad.mit.edu	37	9	113704157	113704157	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT2	54947	broad.mit.edu	37	16	55565831	55565831	+	Silent	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40400506	40400506	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42282594	42282594	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141812825	141812825	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57535139	57535139	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC48	83450	broad.mit.edu	37	17	17900918	17900918	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN2	10446	broad.mit.edu	37	1	204593884	204593884	+	Intron	DEL	C	-	-	rs143936900		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	76975739	76975739	+	3'UTR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115919135	115919135	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115987160	115987160	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM3	27258	broad.mit.edu	37	3	14220343	14220343	+	5'UTR	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33482545	33482545	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	75048590	75048590	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTB	4050	broad.mit.edu	37	6	31548850	31548850	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP4	51213	broad.mit.edu	37	X	114524286	114524286	+	5'Flank	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160789241	160789241	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235904858	235904858	+	Missense_Mutation	SNP	C	G	G	rs148018560		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTFL1	54585	broad.mit.edu	37	3	45869894	45869894	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA10	4109	broad.mit.edu	37	X	151304000	151304000	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA11	4110	broad.mit.edu	37	X	148797451	148797451	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA3	4102	broad.mit.edu	37	X	151935268	151935268	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140967445	140967445	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED2	10916	broad.mit.edu	37	X	54839747	54839747	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED2	10916	broad.mit.edu	37	X	54841073	54841073	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1B1	11253	broad.mit.edu	37	9	139996607	139996607	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2B1	4125	broad.mit.edu	37	19	12760975	12760975	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1LC3C	440738	broad.mit.edu	37	1	242159538	242159538	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K6	5608	broad.mit.edu	37	17	67450502	67450502	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K2	10746	broad.mit.edu	37	2	128087548	128087548	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K2	10746	broad.mit.edu	37	2	128096651	128096651	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71199705	71199705	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK10	5602	broad.mit.edu	37	4	87090215	87090215	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP1	9479	broad.mit.edu	37	11	45926331	45926331	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH10	162333	broad.mit.edu	37	17	60866033	60866033	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220799554	220799554	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220805569	220805569	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD5	55777	broad.mit.edu	37	2	149270532	149270532	+	3'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138669857	138669857	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138688010	138688010	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN3	55283	broad.mit.edu	37	1	85498862	85498862	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCRS1	10445	broad.mit.edu	37	12	49959503	49959503	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47573658	47573658	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47669961	47669961	+	Intron	SNP	G	T	T	rs113480226		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90468013	90468013	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEAF6	64769	broad.mit.edu	37	1	37962294	37962294	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	169276805	169276806	+	Intron	DEL	AC	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECP2	4204	broad.mit.edu	37	X	153297826	153297826	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126732432	126732432	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS1	4211	broad.mit.edu	37	2	66669970	66669970	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL11A	28989	broad.mit.edu	37	9	132397704	132397704	+	Silent	SNP	C	T	T	rs151072869		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5	4249	broad.mit.edu	37	2	135075488	135075488	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR493	574450	broad.mit.edu	37	14	101335285	101335285	+	5'Flank	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR622	693207	broad.mit.edu	37	13	90883176	90883176	+	5'Flank	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129903161	129903161	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129903163	129903163	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLH3	27030	broad.mit.edu	37	14	75514425	75514425	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP12	4321	broad.mit.edu	37	11	102734850	102734850	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89179914	89179914	+	Silent	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP27	64066	broad.mit.edu	37	11	102563669	102563669	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP7	4316	broad.mit.edu	37	11	102394103	102394103	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MN1	4330	broad.mit.edu	37	22	28198923	28198923	+	5'Flank	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPDZ	8777	broad.mit.edu	37	9	13125040	13125040	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP1	4354	broad.mit.edu	37	X	154014616	154014616	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP1	4354	broad.mit.edu	37	X	154022754	154022754	+	Intron	SNP	C	T	T	rs142007963	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED1	758	broad.mit.edu	37	22	43830880	43830880	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A6A	64231	broad.mit.edu	37	11	59940732	59940732	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSMB	4477	broad.mit.edu	37	10	51556783	51556784	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTA3	57504	broad.mit.edu	37	2	42883408	42883408	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTCP1	4515	broad.mit.edu	37	X	154294351	154294351	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTNR1B	4544	broad.mit.edu	37	11	92715526	92715526	+	3'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11174961	11174961	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9005308	9005308	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9038484	9038484	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9074641	9074641	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100679879	100679879	+	Missense_Mutation	SNP	C	T	T	rs71273404		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100682595	100682595	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100695328	100695328	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1213754	1213754	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49419138	49419138	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYADML	151325	broad.mit.edu	37	2	33952708	33952708	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC1	4604	broad.mit.edu	37	12	102025749	102025749	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77644747	77644747	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10215525	10215525	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10406597	10406598	+	Intron	INS	-	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10433079	10433079	+	Intron	SNP	T	C	C	rs140153513	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL4	4635	broad.mit.edu	37	17	45299669	45299669	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK3	91807	broad.mit.edu	37	16	46766387	46766387	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16711189	16711189	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109779932	109779932	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26181403	26181403	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1A	4640	broad.mit.edu	37	12	57422451	57422451	+	3'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1A	4640	broad.mit.edu	37	12	57433111	57433111	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1A	4640	broad.mit.edu	37	12	57440853	57440853	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26305791	26305791	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26409803	26409803	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26436439	26436439	+	Silent	SNP	C	T	T	rs150600683		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171240417	171240417	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYRIP	25924	broad.mit.edu	37	3	40299730	40299730	+	3'UTR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST4	23522	broad.mit.edu	37	10	76784747	76784747	+	Missense_Mutation	SNP	G	A	A	rs138617006	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAIP	4671	broad.mit.edu	37	5	70308408	70308408	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	102047643	102047643	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78540113	78540113	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	36046595	36046595	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145286839	145286840	+	Intron	INS	-	TT	TT	rs11487291		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145311569	145311569	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145579396	145579396	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145706616	145706616	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	146418202	146418202	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF14	25832	broad.mit.edu	37	1	148003801	148003801	+	3'UTR	SNP	C	T	T	rs138972996	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16901321	16901321	+	Intron	SNP	G	A	A	rs10752421		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145047039	145047039	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145048529	145048529	+	Intron	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145051421	145051421	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145056919	145056919	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145069497	145069498	+	Intron	INS	-	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145072066	145072066	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145111362	145111362	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145190799	145190799	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145191738	145191738	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA6	23054	broad.mit.edu	37	20	33329685	33329685	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCR2	9436	broad.mit.edu	37	6	41304236	41304236	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDP	4693	broad.mit.edu	37	X	43809121	43809121	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST1	3340	broad.mit.edu	37	5	149912381	149912381	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115858750	115858750	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA1	4694	broad.mit.edu	37	X	119005827	119005827	+	5'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21147150	21147150	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152496381	152496382	+	Intron	INS	-	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152522011	152522011	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152541305	152541305	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFL	4747	broad.mit.edu	37	8	24812994	24812994	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20958066	20958066	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29559881	29559881	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29654664	29654664	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204923420	204923420	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFE2L2	4780	broad.mit.edu	37	2	178096096	178096096	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFYC	4802	broad.mit.edu	37	1	41204676	41204676	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHSL2	340527	broad.mit.edu	37	X	71288403	71288403	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKG7	4818	broad.mit.edu	37	19	51875431	51875431	+	Silent	SNP	G	A	A	rs144240268		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKRF	55922	broad.mit.edu	37	X	118724170	118724171	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5425044	5425044	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMD3	51068	broad.mit.edu	37	3	160965079	160965079	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMNAT2	23057	broad.mit.edu	37	1	183221760	183221760	+	3'UTR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMNAT2	23057	broad.mit.edu	37	1	183230509	183230510	+	Intron	DNP	TG	CT	CT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMNAT2	23057	broad.mit.edu	37	1	183387498	183387498	+	5'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMU	10874	broad.mit.edu	37	4	56482460	56482460	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NNMT	4837	broad.mit.edu	37	11	114127526	114127526	+	5'Flank	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL4	8715	broad.mit.edu	37	18	31463018	31463018	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL9	79707	broad.mit.edu	37	1	6586685	6586685	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NONO	4841	broad.mit.edu	37	X	70510515	70510515	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1AP	9722	broad.mit.edu	37	1	162268142	162268142	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2NL	388677	broad.mit.edu	37	1	145283255	145283255	+	3'UTR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120506172	120506172	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOV	4856	broad.mit.edu	37	8	120430556	120430556	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89068997	89068997	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89177467	89177467	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPLOC4	55666	broad.mit.edu	37	17	79580490	79580490	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR4A3	8013	broad.mit.edu	37	9	102595773	102595773	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115364594	115364594	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115380512	115380513	+	Intron	DNP	TG	GT	GT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107790155	107790155	+	3'UTR	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107866017	107866017	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84447545	84447545	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP1	8204	broad.mit.edu	37	21	16340221	16340221	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206628157	206628157	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50280583	50280583	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	78692324	78692325	+	Intron	DNP	GT	TG	TG			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79200292	79200292	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79423462	79423462	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTF3	4908	broad.mit.edu	37	12	5588354	5588354	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131717428	131717428	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131836904	131836904	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131865402	131865402	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132204935	132204935	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107866731	107866731	+	Intron	DEL	C	-	-	rs80083341		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107979278	107979278	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88525844	88525844	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88667299	88667299	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUMA1	4926	broad.mit.edu	37	11	71715082	71715082	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP160	23279	broad.mit.edu	37	11	47829998	47829998	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP160	23279	broad.mit.edu	37	11	47857177	47857177	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135323483	135323483	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	153965279	153965279	+	3'UTR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NWD1	284434	broad.mit.edu	37	19	16902383	16902383	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102337996	102337996	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101804821	101804821	+	5'Flank	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101805267	101805268	+	Intron	DNP	CC	AT	AT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101818963	101818963	+	RNA	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101091849	101091849	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101096623	101096623	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101098123	101098123	+	5'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH1	30010	broad.mit.edu	37	7	8651448	8651448	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123637367	123637367	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123822530	123822530	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123870869	123870869	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGT	8473	broad.mit.edu	37	X	70767659	70767659	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGT	8473	broad.mit.edu	37	X	70767788	70767788	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGT	8473	broad.mit.edu	37	X	70777049	70777049	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53603065	53603065	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ONECUT2	9480	broad.mit.edu	37	18	55143662	55143662	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132304819	132304819	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132305912	132305912	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132693027	132693027	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	133010616	133010616	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPHN1	4983	broad.mit.edu	37	X	67327529	67327529	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRM1	4988	broad.mit.edu	37	6	154414512	154414512	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J1	26476	broad.mit.edu	37	1	159410295	159410295	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Q1	219960	broad.mit.edu	37	11	57995886	57995886	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10W1	81341	broad.mit.edu	37	11	58034795	58034795	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10X1	128367	broad.mit.edu	37	1	158549796	158549796	+	5'Flank	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Z1	128368	broad.mit.edu	37	1	158576995	158576995	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A2	442361	broad.mit.edu	37	7	143807167	143807167	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B6	26212	broad.mit.edu	37	6	27925457	27925457	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247695256	247695256	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G2	81470	broad.mit.edu	37	1	247751499	247751499	+	5'Flank	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248097638	248097638	+	5'Flank	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248138843	248138843	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247091	248247091	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M1P	388762	broad.mit.edu	37	1	248285644	248285644	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M1P	388762	broad.mit.edu	37	1	248285647	248285647	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M7	391196	broad.mit.edu	37	1	248487861	248487861	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T10	127069	broad.mit.edu	37	1	248756858	248756858	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W3	343171	broad.mit.edu	37	1	248059191	248059191	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W5	441932	broad.mit.edu	37	1	247654449	247654449	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55135487	55135487	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A16	81327	broad.mit.edu	37	11	55111427	55111427	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C11	219429	broad.mit.edu	37	11	55370991	55370991	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M1	441670	broad.mit.edu	37	14	20248771	20248771	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4P4	81300	broad.mit.edu	37	11	55405768	55405768	+	5'Flank	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4S2	219431	broad.mit.edu	37	11	55419009	55419009	+	Silent	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A3	390083	broad.mit.edu	37	11	5969312	5969312	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AN1	390195	broad.mit.edu	37	11	59132851	59132851	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5P2	120065	broad.mit.edu	37	11	7817741	7817741	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C2	341416	broad.mit.edu	37	12	55846562	55846562	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N1	128372	broad.mit.edu	37	1	158735630	158735630	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B2	26595	broad.mit.edu	37	11	124253105	124253105	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B3	390271	broad.mit.edu	37	11	124267113	124267113	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8K5	219453	broad.mit.edu	37	11	55926935	55926935	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57797249	57797249	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57876617	57876617	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSCAR	126014	broad.mit.edu	37	19	54604075	54604075	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSR2	116039	broad.mit.edu	37	8	99961221	99961221	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29617494	29617494	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY2	5029	broad.mit.edu	37	11	72945675	72945675	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P704P	641455	broad.mit.edu	37	14	20019996	20019996	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1L	80336	broad.mit.edu	37	20	43547710	43547710	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1P2	728773	broad.mit.edu	37	2	147345676	147345676	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC5	140886	broad.mit.edu	37	X	90690871	90690871	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAFAH1B1	5048	broad.mit.edu	37	17	2583589	2583589	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110289543	110289543	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110463776	110463776	+	3'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9543476	9543476	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAMR1	25891	broad.mit.edu	37	11	35492293	35492293	+	Missense_Mutation	SNP	G	A	A	rs144144764	byFrequency	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPL	390928	broad.mit.edu	37	19	39589522	39589522	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPOLA	10914	broad.mit.edu	37	14	97009236	97009236	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP10	84875	broad.mit.edu	37	8	145058997	145058997	+	Silent	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150780100	150780100	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102533825	102533825	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX1	5087	broad.mit.edu	37	1	164662381	164662383	+	Intron	DEL	CAG	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91090515	91090515	+	Missense_Mutation	SNP	G	T	T	rs144734965	byFrequency	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91133598	91133598	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140166174	140166174	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA5	56143	broad.mit.edu	37	5	140203277	140203277	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA6	56142	broad.mit.edu	37	5	140208622	140208622	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA8	56140	broad.mit.edu	37	5	140222201	140222201	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB2	56133	broad.mit.edu	37	5	140475894	140475894	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140773662	140773662	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB1	56104	broad.mit.edu	37	5	140731490	140731490	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB4	8641	broad.mit.edu	37	5	140769092	140769092	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82544953	82544953	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCMTD1	115294	broad.mit.edu	37	8	52758276	52758276	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71489976	71489976	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDAP1	11333	broad.mit.edu	37	7	99001133	99001133	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178862195	178862195	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31890120	31890120	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4A	5141	broad.mit.edu	37	19	10565513	10565513	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66833805	66833805	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144992377	144992377	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145020321	145020321	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145024569	145024570	+	Intron	DEL	AC	-	-	rs10535581		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145025289	145025289	+	Intron	SNP	G	T	T	rs112449329		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145026525	145026525	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4D	5144	broad.mit.edu	37	5	58317296	58317296	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55087364	55087364	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32061173	32061173	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5L	51555	broad.mit.edu	37	3	179615934	179615934	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB1	5207	broad.mit.edu	37	X	54987335	54987335	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB1	5207	broad.mit.edu	37	X	54989706	54989706	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP2	114770	broad.mit.edu	37	19	15586230	15586230	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP3	114771	broad.mit.edu	37	1	153283229	153283229	+	5'Flank	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGR	5241	broad.mit.edu	37	11	100920868	100920868	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGS1	9489	broad.mit.edu	37	17	76396790	76396790	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF6	84295	broad.mit.edu	37	X	133547965	133547965	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47533764	47533764	+	Silent	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47632620	47632620	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHTF2	57157	broad.mit.edu	37	7	77469691	77469691	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2A	5286	broad.mit.edu	37	11	17115871	17115871	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRB	29990	broad.mit.edu	37	7	99950619	99950619	+	Splice_Site	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL4	143689	broad.mit.edu	37	11	94351135	94351135	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PJA1	64219	broad.mit.edu	37	X	68381182	68381182	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47852943	47852944	+	Intron	DNP	CC	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110510782	110510782	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51923295	51923295	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125079258	125079258	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125281797	125281797	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP1	5317	broad.mit.edu	37	1	201263122	201263122	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP4	8502	broad.mit.edu	37	2	159488548	159488548	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G7	7941	broad.mit.edu	37	6	46675888	46675888	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28804980	28804980	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8528981	8528984	+	Intron	DEL	TCTT	-	-	rs10541606		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8628660	8628660	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8637933	8637933	+	Splice_Site	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198956915	198956915	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18854510	18854510	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18892442	18892442	+	5'Flank	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA5	54477	broad.mit.edu	37	12	19460891	19460891	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204218035	204218035	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132022463	132022463	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132044842	132044842	+	Intron	SNP	G	A	A	rs142852781	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG4B	153478	broad.mit.edu	37	5	181795	181795	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG7	440107	broad.mit.edu	37	12	93147902	93147902	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEK	5341	broad.mit.edu	37	2	68607711	68607711	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK1S1	55857	broad.mit.edu	37	20	21142700	21142700	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK4	10733	broad.mit.edu	37	4	128807079	128807079	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLP1	5354	broad.mit.edu	37	X	103041173	103041173	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20534306	20534306	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA3	55558	broad.mit.edu	37	X	153688886	153688886	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA3	55558	broad.mit.edu	37	X	153697726	153697726	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131829786	131829786	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	132192419	132192419	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNC1	10154	broad.mit.edu	37	12	94634548	94634548	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PML	5371	broad.mit.edu	37	15	74325121	74325121	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L1	5379	broad.mit.edu	37	7	99927981	99927981	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNMA5	114824	broad.mit.edu	37	X	152160070	152160070	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POC1B	282809	broad.mit.edu	37	12	89865359	89865359	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLH	5429	broad.mit.edu	37	6	43568549	43568549	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2G	5436	broad.mit.edu	37	11	62529221	62529221	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POT1	25913	broad.mit.edu	37	7	124464083	124464083	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	132010918	132010918	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	132021524	132021524	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU3F4	5456	broad.mit.edu	37	X	82764010	82764010	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAP2B	8613	broad.mit.edu	37	1	57004108	57004108	+	Intron	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARD	5467	broad.mit.edu	37	6	35378976	35378976	+	Missense_Mutation	SNP	C	A	A	rs147861745		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPCDC	60490	broad.mit.edu	37	15	75341301	75341301	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP2	8495	broad.mit.edu	37	11	7561477	7561477	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1L	151742	broad.mit.edu	37	3	160624698	160624698	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1C	151242	broad.mit.edu	37	2	182907614	182907614	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146070866	146070866	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146080909	146080909	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2C	5522	broad.mit.edu	37	4	6494118	6494118	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3CA	5530	broad.mit.edu	37	4	101947137	101947137	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PQLC1	80148	broad.mit.edu	37	18	77703499	77703499	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF1	65121	broad.mit.edu	37	1	12855647	12855647	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF2	65122	broad.mit.edu	37	1	12918837	12918837	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF4	400735	broad.mit.edu	37	1	12939641	12939641	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM10	56980	broad.mit.edu	37	11	129801063	129801063	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM2	7799	broad.mit.edu	37	1	14073347	14073347	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM6	93166	broad.mit.edu	37	5	122506864	122506864	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23509999	23509999	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23524382	23524382	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69002766	69002766	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69032571	69032571	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186275564	186275564	+	Missense_Mutation	SNP	C	G	G	rs12128607	byFrequency;by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57314489	57314489	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57390335	57390335	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57422066	57422067	+	Intron	INS	-	T	T	rs141911261		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57434028	57434028	+	Intron	DEL	C	-	-	rs66506304		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCH	5583	broad.mit.edu	37	14	61656303	61656303	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCH	5583	broad.mit.edu	37	14	61659325	61659325	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53781121	53781121	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROK2	60675	broad.mit.edu	37	3	71830633	71830634	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD3	23362	broad.mit.edu	37	8	18662320	18662320	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43674241	43674241	+	3'UTR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43679647	43679647	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43514502	43514502	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSKH2	85481	broad.mit.edu	37	8	87063291	87063292	+	Intron	INS	-	TTTG	TTTG	rs111727263		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD3	5709	broad.mit.edu	37	17	38140627	38140627	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCH1	5727	broad.mit.edu	37	9	98244371	98244371	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71331711	71331711	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTP4A1	7803	broad.mit.edu	37	6	64259011	64259011	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPDC1	138639	broad.mit.edu	37	9	96857587	96857588	+	Intron	INS	-	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214546293	214546293	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70966027	70966027	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	71029451	71029451	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40811964	40811964	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41306427	41306427	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121684623	121684623	+	Splice_Site	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTX4	390667	broad.mit.edu	37	16	1536155	1536155	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL2	5819	broad.mit.edu	37	19	45377033	45377033	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52321170	52321170	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD2	84795	broad.mit.edu	37	10	100146712	100146712	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9313807	9313807	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB15	376267	broad.mit.edu	37	14	65417703	65417703	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3IP	117177	broad.mit.edu	37	12	70150087	70150087	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB6A	5870	broad.mit.edu	37	11	73429723	73429723	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB6B	51560	broad.mit.edu	37	3	133547660	133547660	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51L1	5890	broad.mit.edu	37	14	69148361	69148361	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54L	8438	broad.mit.edu	37	1	46740392	46740392	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPB	57148	broad.mit.edu	37	20	37188750	37188750	+	Intron	DEL	T	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178753642	178753642	+	Silent	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85403834	85403834	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3L	202151	broad.mit.edu	37	5	36284428	36284429	+	Intron	INS	-	T	T	rs140779703	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3	8498	broad.mit.edu	37	19	5932408	5932408	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1A	5906	broad.mit.edu	37	1	112191377	112191377	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173832214	173832214	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA1	5921	broad.mit.edu	37	5	86645181	86645181	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80429898	80429899	+	Intron	INS	-	GT	GT	rs139770057	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP6	5930	broad.mit.edu	37	16	24578601	24578601	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBKS	64080	broad.mit.edu	37	2	28095803	28095803	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM23	55147	broad.mit.edu	37	14	23370874	23370874	+	3'UTR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM33	155435	broad.mit.edu	37	7	155511072	155511072	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM41	55285	broad.mit.edu	37	X	106356257	106356257	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBPMS2	348093	broad.mit.edu	37	15	65041462	65041462	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H1	149041	broad.mit.edu	37	1	173939679	173939679	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERG	85004	broad.mit.edu	37	12	15262427	15262428	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFPL4A	342931	broad.mit.edu	37	19	56274270	56274270	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFTN2	130132	broad.mit.edu	37	2	198498522	198498522	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS4	5999	broad.mit.edu	37	1	163039311	163039311	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241463959	241463959	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDF1	64285	broad.mit.edu	37	16	108670	108670	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDF1	64285	broad.mit.edu	37	16	112636	112636	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOQ	23433	broad.mit.edu	37	2	46803613	46803613	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOXF2B	727940	broad.mit.edu	37	X	119293345	119293345	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130941233	130941233	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40613017	40613017	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLIM	51132	broad.mit.edu	37	X	73811612	73811612	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87049387	87049387	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87414191	87414191	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF168	165918	broad.mit.edu	37	3	196214492	196214492	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNLS	55328	broad.mit.edu	37	10	90074095	90074095	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNLS	55328	broad.mit.edu	37	10	90074097	90074097	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNPEP	6051	broad.mit.edu	37	1	201958761	201958761	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORA	6095	broad.mit.edu	37	15	61152120	61152120	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAP1	26015	broad.mit.edu	37	15	41815414	41815414	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1L	23322	broad.mit.edu	37	16	53672396	53672396	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL10L	140801	broad.mit.edu	37	14	47120507	47120507	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL36A	6173	broad.mit.edu	37	X	100646602	100646602	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS27	6232	broad.mit.edu	37	1	153964363	153964363	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA6	27330	broad.mit.edu	37	X	83360759	83360759	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA6	27330	broad.mit.edu	37	X	83402986	83402986	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7230227	7230227	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	108913118	108913118	+	3'UTR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	108995951	108995951	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1	861	broad.mit.edu	37	21	36467136	36467136	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237900637	237900638	+	Intron	DNP	GC	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23915047	23915047	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134992425	134992425	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51172874	51172874	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASH3	54440	broad.mit.edu	37	X	128926858	128926858	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78192077	78192077	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCFD2	152579	broad.mit.edu	37	4	53751768	53751768	+	Intron	SNP	G	T	T	rs114828846	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCMH1	22955	broad.mit.edu	37	1	41578782	41578782	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML2	10389	broad.mit.edu	37	X	18341953	18341953	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166237055	166237055	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62049695	62049695	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRIB	23513	broad.mit.edu	37	8	144891925	144891925	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16B	89866	broad.mit.edu	37	1	177909875	177909875	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23B	10483	broad.mit.edu	37	20	18492938	18492938	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC62	7095	broad.mit.edu	37	3	169703589	169703589	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELE	6401	broad.mit.edu	37	1	169694799	169694799	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELL	6402	broad.mit.edu	37	1	169679513	169679513	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6B	10501	broad.mit.edu	37	19	4556051	4556051	+	Silent	SNP	C	A	A	rs73527729	byFrequency;by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95035874	95035874	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB11	89778	broad.mit.edu	37	18	61388402	61388402	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE2	5270	broad.mit.edu	37	2	224866368	224866368	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135205501	135205501	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L2	26470	broad.mit.edu	37	16	29908169	29908169	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26640580	26640580	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS9	8683	broad.mit.edu	37	12	120901792	120901792	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN3	81855	broad.mit.edu	37	10	102798282	102798282	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	156017843	156017843	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	13959702	13959702	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14720490	14720490	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67136545	67136545	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGMS1	259230	broad.mit.edu	37	10	52066855	52066855	+	3'UTR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BGR	6450	broad.mit.edu	37	21	40824153	40824153	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148421175	148421175	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148427380	148427380	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA9	729993	broad.mit.edu	37	16	13326990	13326990	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIN3B	23309	broad.mit.edu	37	19	16977262	16977262	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232579424	232579424	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38673055	38673055	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPA	140885	broad.mit.edu	37	20	1902071	1902071	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPA	140885	broad.mit.edu	37	20	1918276	1918276	+	3'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPD	128646	broad.mit.edu	37	20	1532360	1532360	+	Missense_Mutation	SNP	C	G	G	rs141059543		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164793808	164793808	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44672666	44672666	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44684782	44684782	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A5	284111	broad.mit.edu	37	17	6610463	6610463	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	42946265	42946265	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A2	6565	broad.mit.edu	37	3	121658136	121658136	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A2	10246	broad.mit.edu	37	6	25917015	25917015	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A23	63027	broad.mit.edu	37	6	3287280	3287280	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A31	83447	broad.mit.edu	37	4	128694602	128694602	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92407401	92407401	+	3'UTR	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128335250	128335250	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A2	9153	broad.mit.edu	37	15	45554362	45554362	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A6	55676	broad.mit.edu	37	2	32427238	32427238	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A9	10463	broad.mit.edu	37	4	42072578	42072578	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC33A1	9197	broad.mit.edu	37	3	155571368	155571368	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B3	51000	broad.mit.edu	37	6	8417116	8417116	+	Splice_Site	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118588148	118588148	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F4	341880	broad.mit.edu	37	14	58048191	58048191	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F4	341880	broad.mit.edu	37	14	58060567	58060567	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC37A3	84255	broad.mit.edu	37	7	140035027	140035027	+	3'UTR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A6	145389	broad.mit.edu	37	14	61482646	61482646	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A8	146167	broad.mit.edu	37	16	84066907	84066907	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18284617	18284617	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75699718	75699718	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75911683	75911683	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33964168	33964168	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74481740	74481740	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A11	6538	broad.mit.edu	37	3	10905396	10905396	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1216785	1216785	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A4	6532	broad.mit.edu	37	17	28530395	28530395	+	Intron	SNP	C	A	A	rs56162408		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20652075	20652075	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40392214	40392214	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40605837	40605837	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70512598	70512598	+	3'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A6	10479	broad.mit.edu	37	X	135098824	135098824	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21551342	21551342	+	5'Flank	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168176542	168176542	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168324901	168324901	+	Intron	DEL	C	-	-	rs111565966		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84454262	84454262	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144898835	144898835	+	5'Flank	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK4	139065	broad.mit.edu	37	X	142718957	142718957	+	5'UTR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA1	6594	broad.mit.edu	37	X	128657044	128657044	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPX	23676	broad.mit.edu	37	X	21762044	21762044	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88367253	88367253	+	5'Flank	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84333034	84333034	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25318309	25318309	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51363079	51363079	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108489683	108489683	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106802914	106802914	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOS1	6654	broad.mit.edu	37	2	39285804	39285804	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX7	83595	broad.mit.edu	37	8	10583458	10583458	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214878642	214878642	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG9	9043	broad.mit.edu	37	17	49048028	49048028	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG9	9043	broad.mit.edu	37	17	49098727	49098727	+	Splice_Site	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123593576	123593576	+	5'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXC	64663	broad.mit.edu	37	X	140336710	140336710	+	5'Flank	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXC	64663	broad.mit.edu	37	X	140373583	140373583	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN1	494118	broad.mit.edu	37	X	144336524	144336527	+	Intron	DEL	ACCA	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN1	494118	broad.mit.edu	37	X	144336736	144336736	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN2	494119	broad.mit.edu	37	X	142803585	142803585	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN4	441525	broad.mit.edu	37	X	142117844	142117844	+	Intron	DEL	G	-	-	rs142435885		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATS1	221409	broad.mit.edu	37	6	44344260	44344260	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35668654	35668654	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35792527	35792527	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG20	23111	broad.mit.edu	37	13	36942350	36942350	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55648735	55648735	+	5'Flank	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158580934	158580934	+	3'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158580936	158580936	+	3'UTR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158597361	158597361	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158645855	158645855	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN1	6711	broad.mit.edu	37	2	54843381	54843381	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65234298	65234299	+	Intron	INS	-	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A2	6716	broad.mit.edu	37	2	31762851	31762851	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH1	54434	broad.mit.edu	37	12	109198892	109198892	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL2	6483	broad.mit.edu	37	16	70432294	70432295	+	Missense_Mutation	DNP	CG	AA	AA	rs149280914		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104046429	104046429	+	Silent	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104079016	104079016	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104121076	104121076	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104126559	104126559	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG2	10735	broad.mit.edu	37	X	123204916	123204916	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD3	10948	broad.mit.edu	37	17	37815776	37815776	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK39	27347	broad.mit.edu	37	2	168997079	168997079	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOML3	161003	broad.mit.edu	37	13	39541077	39541077	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74477340	74477340	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3B	201595	broad.mit.edu	37	3	31641905	31641905	+	Silent	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3B	201595	broad.mit.edu	37	3	31659275	31659275	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX2	2054	broad.mit.edu	37	12	131293210	131293210	+	Missense_Mutation	SNP	C	G	G	rs149127129	byFrequency	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX2	2054	broad.mit.edu	37	12	131293229	131293229	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT6B1	391365	broad.mit.edu	37	2	37414644	37414644	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD4	55061	broad.mit.edu	37	1	223497485	223497485	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113168917	113168917	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113213737	113213737	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113213739	113213739	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12089792	12089792	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152532593	152532593	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR1	6869	broad.mit.edu	37	2	75322461	75322461	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR1	6869	broad.mit.edu	37	2	75350575	75350575	+	Intron	SNP	C	A	A	rs115749547	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGLN3	29114	broad.mit.edu	37	3	111718410	111718411	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160031289	160031289	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R40	259286	broad.mit.edu	37	7	142918956	142918956	+	5'Flank	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAZ	6901	broad.mit.edu	37	X	153642004	153642005	+	Intron	DNP	CG	TT	TT	rs35731638		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCCD1	55171	broad.mit.edu	37	3	186271888	186271888	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79279574	79279574	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79286261	79286261	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHHL1	126637	broad.mit.edu	37	1	152060367	152060367	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD6	221400	broad.mit.edu	37	6	46657163	46657163	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD4	7004	broad.mit.edu	37	12	3119872	3119872	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX11	56159	broad.mit.edu	37	X	70073066	70073067	+	Intron	INS	-	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX28	1527	broad.mit.edu	37	X	153505595	153505595	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177681	89177681	+	Silent	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43526973	43526973	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11441645	11441645	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138169324	138169324	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43774977	43774978	+	Intron	DNP	CA	AT	AT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156375423	156375423	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153524116	153524116	+	5'UTR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153541000	153541000	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35699910	35699910	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63073493	63073493	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM4SF5	9032	broad.mit.edu	37	17	4675171	4675171	+	5'Flank	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF4	81501	broad.mit.edu	37	8	105360972	105360972	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF4	81501	broad.mit.edu	37	8	105361102	105361102	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	125955814	125955814	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129617823	129617823	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32959924	32959924	+	Missense_Mutation	SNP	C	G	G	rs148901847	byFrequency	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM144	55314	broad.mit.edu	37	4	159156650	159156650	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM171	134285	broad.mit.edu	37	5	72419493	72419493	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM194A	23306	broad.mit.edu	37	12	57457954	57457954	+	Silent	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM225	338661	broad.mit.edu	37	11	123756149	123756149	+	5'UTR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM31	203562	broad.mit.edu	37	X	102968777	102968777	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM56	148534	broad.mit.edu	37	1	95628883	95628883	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94777668	94777668	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM86A	144110	broad.mit.edu	37	11	18723452	18723452	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM9	252839	broad.mit.edu	37	1	201115898	201115898	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMLHE	55217	broad.mit.edu	37	X	154720960	154720960	+	3'UTR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMSB15A	11013	broad.mit.edu	37	X	101769133	101769133	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS2	80351	broad.mit.edu	37	10	93611069	93611069	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175049310	175049310	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC18	84629	broad.mit.edu	37	7	5360212	5360212	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6A	27327	broad.mit.edu	37	16	24802584	24802584	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175293635	175293635	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175306892	175306892	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1L1	10040	broad.mit.edu	37	17	53038146	53038146	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOPBP1	11073	broad.mit.edu	37	3	133375796	133375796	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR3A	64222	broad.mit.edu	37	1	179064318	179064318	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX	9760	broad.mit.edu	37	8	59764213	59764213	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579358	7579358	+	Missense_Mutation	SNP	C	A	A	rs11540654		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579752	7579752	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPM3	7170	broad.mit.edu	37	1	154148630	154148630	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10969930	10969930	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK2	66008	broad.mit.edu	37	2	202254176	202254176	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML4	285852	broad.mit.edu	37	6	41204319	41204319	+	Nonstop_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72704091	72704091	+	Intron	DEL	G	-	-	rs7970630	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72774538	72774538	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM43	129868	broad.mit.edu	37	2	96262129	96262129	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM49	57093	broad.mit.edu	37	11	89531802	89531802	+	Intron	DEL	A	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248039252	248039252	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC1	7220	broad.mit.edu	37	3	142523308	142523308	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38357119	38357119	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77403430	77403430	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77403702	77403702	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234863911	234863911	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234873364	234873364	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234878399	234878399	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234891489	234891489	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV3	162514	broad.mit.edu	37	17	3427682	3427682	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRY6	154754	broad.mit.edu	37	7	142481804	142481804	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSG101	7251	broad.mit.edu	37	11	18505561	18505561	+	Silent	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51722784	51722784	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768669	31768669	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN2	10100	broad.mit.edu	37	1	115601639	115601639	+	Intron	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC14	151613	broad.mit.edu	37	3	180320030	180320030	+	5'UTR	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC18	118491	broad.mit.edu	37	10	75072377	75072377	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC35	9694	broad.mit.edu	37	8	109453979	109453979	+	5'Flank	DEL	T	-	-	rs144246994		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179530287	179530287	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179586471	179586471	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179658028	179658028	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3C	7278	broad.mit.edu	37	13	19753625	19753625	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUSC5	286753	broad.mit.edu	37	17	1198690	1198690	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC6	347736	broad.mit.edu	37	3	138023966	138023966	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRP1	7306	broad.mit.edu	37	9	12704747	12704747	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2E2	7325	broad.mit.edu	37	3	23309482	23309482	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404042	34404042	+	RNA	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2Q1	55585	broad.mit.edu	37	1	154528093	154528093	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN2	29978	broad.mit.edu	37	X	56591133	56591133	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN4	56893	broad.mit.edu	37	1	156011313	156011313	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42611955	42611955	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19443693	19443693	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UFD1L	7353	broad.mit.edu	37	22	19444059	19444059	+	Intron	DEL	T	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A1	10941	broad.mit.edu	37	4	70460862	70460862	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A1	10941	broad.mit.edu	37	4	70505439	70505439	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35988626	35988626	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96091363	96091363	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96091647	96091647	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URGCP	55665	broad.mit.edu	37	7	43916325	43916325	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216246298	216246298	+	Silent	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216259098	216259098	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USHBP1	83878	broad.mit.edu	37	19	17370140	17370140	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179399940	179399940	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107161157	107161157	+	IGR	SNP	A	T	T	rs141855313	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107254568	107254568	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	109336088	109336088	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	110892922	110892922	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	113018829	113018829	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	11416561	11416561	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	132541942	132541942	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	133655672	133655672	+	IGR	SNP	C	G	G	rs111438456		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	18410355	18410355	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	20599381	20599381	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	2112419	2112419	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37333088	37333088	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38450683	38450683	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38539771	38539771	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38982118	38982118	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	3926961	3926961	+	IGR	DEL	A	-	-	rs146764761		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	3986012	3986012	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42383711	42383712	+	IGR	INS	-	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	50768993	50768993	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	5390496	5390496	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	5390506	5390506	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	64670971	64670972	+	IGR	INS	-	A	A	rs141836871	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	91575717	91575717	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	92836752	92836752	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	93400000	93400001	+	IGR	INS	-	CA	CA	rs146842695	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	103590810	103590811	+	IGR	INS	-	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	104618037	104618037	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	114729709	114729709	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	114744862	114744862	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	114797894	114797894	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	114850125	114850125	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	115556337	115556337	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	116116231	116116231	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	118811932	118811932	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	121535764	121535767	+	IGR	DEL	GAAG	-	-	rs72131634		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	123827148	123827148	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124029772	124029772	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15901037	15901037	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30210094	30210094	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	36754724	36754724	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	40107910	40107910	+	IGR	DEL	A	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	42124422	42124422	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4232021	4232021	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4474578	4474578	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4475302	4475302	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45592102	45592102	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48869281	48869281	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48929999	48929999	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48968036	48968036	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49897791	49897791	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50129580	50129580	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55647141	55647141	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55821999	55821999	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56322375	56322375	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56693605	56693605	+	IGR	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58059308	58059308	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58660932	58660932	+	IGR	DEL	A	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58663688	58663688	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	61711700	61711700	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79951807	79951807	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87239162	87239162	+	IGR	DEL	G	-	-	rs111374172		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90383898	90383898	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90598493	90598494	+	IGR	DEL	AC	-	-	rs35783260		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90848255	90848255	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	91409594	91409594	+	IGR	DEL	A	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	92742364	92742364	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	93921606	93921606	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94783552	94783552	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	95388557	95388557	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97354431	97354431	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97354440	97354440	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	98078195	98078195	+	IGR	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128713341	128713341	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	17536286	17536286	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31901187	31901187	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33139045	33139046	+	IGR	DEL	TT	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33882957	33882957	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	46459698	46459698	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	54082177	54082178	+	IGR	INS	-	TTG	TTG	rs146865283	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58615201	58615201	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	67577268	67577269	+	IGR	INS	-	T	T	rs148356386	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	75917537	75917537	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	76709419	76709419	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80450306	80450306	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	83986006	83986006	+	IGR	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	85345042	85345042	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88366941	88366943	+	IGR	DEL	GAG	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	90919353	90919353	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	9509902	9509902	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98355336	98355336	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98555056	98555056	+	IGR	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	101387713	101387713	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105466862	105466862	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19058712	19058712	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53709345	53709345	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	55711594	55711594	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61326421	61326421	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61627446	61627446	+	IGR	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	73674738	73674738	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	75303950	75303950	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	75451462	75451462	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	77480775	77480775	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	87871343	87871343	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	100431226	100431226	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19123659	19123659	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20723068	20723068	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25809874	25809874	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	32357417	32357417	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	34955365	34955365	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43734986	43734986	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52769946	52769946	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	62331209	62331209	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	66859605	66859605	+	IGR	DEL	G	-	-	rs35762661		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	86208878	86208878	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96429097	96429097	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97618405	97618405	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97691923	97691923	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97759717	97759717	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20445858	20445858	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31130067	31130067	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	35531257	35531257	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	37783281	37783281	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	37945001	37945001	+	IGR	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	39775497	39775498	+	IGR	INS	-	A	A	rs72437631		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	46049386	46049386	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	77272699	77272699	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	87757789	87757792	+	IGR	DEL	GGAA	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	87793225	87793225	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	95189901	95189901	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	95289496	95289496	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96985538	96985539	+	IGR	DNP	GG	TT	TT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97170608	97170608	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	16906365	16906365	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	16906417	16906417	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32111397	32111397	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32368295	32368295	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32374943	32374943	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32450980	32450980	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32490381	32490381	+	IGR	SNP	C	T	T	rs113695612		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32490386	32490386	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32616285	32616285	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32835812	32835812	+	IGR	SNP	C	T	T	rs147166362	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33503694	33503694	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33504562	33504562	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33946489	33946489	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34877418	34877418	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46885124	46885124	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	49046441	49046444	+	IGR	DEL	TCTT	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51141782	51141782	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52750810	52750810	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52788319	52788319	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60058428	60058428	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60392515	60392515	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	61089823	61089823	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	61666914	61666914	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73769915	73769915	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	75743509	75743509	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	78083461	78083461	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79965829	79965829	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	80403762	80403762	+	IGR	SNP	A	G	G	rs60358661	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	15737442	15737442	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21542062	21542062	+	IGR	SNP	A	G	G	rs140016429	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21553245	21553245	+	IGR	SNP	C	T	T	rs113146318	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21554398	21554398	+	IGR	SNP	T	A	A	rs77976532	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25601193	25601193	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39105740	39105740	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	47282828	47282828	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	48016856	48016856	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51680022	51680022	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	54805997	54805997	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	63449618	63449618	+	IGR	DEL	G	-	-	rs140499611		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	68307399	68307399	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	69920999	69920999	+	IGR	DEL	A	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	69966973	69966973	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	75663428	75663429	+	IGR	DNP	GG	AT	AT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11619765	11619765	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14378374	14378374	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	23784985	23784985	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26635582	26635582	+	IGR	SNP	G	T	T	rs112406113	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	28182053	28182053	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	28870031	28870031	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	37399125	37399125	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39369311	39369311	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39525600	39525600	+	IGR	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	4722530	4722530	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	55524132	55524132	+	IGR	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	61401975	61401975	+	IGR	DEL	T	-	-	rs34802022		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	62337668	62337668	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	66997180	66997180	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	70023182	70023182	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	70169593	70169593	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	71646038	71646038	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	18159670	18159670	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	19944391	19944391	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20317750	20317750	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22655383	22655383	+	IGR	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22655385	22655385	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22792764	22792764	+	IGR	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22868638	22868638	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	27735231	27735231	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29436201	29436201	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31359610	31359611	+	IGR	INS	-	G	G	rs72542947	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31568614	31568614	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51270280	51270281	+	IGR	DNP	CT	AG	AG			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	8889996	8889996	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9315025	9315025	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9346611	9346611	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102840596	102840596	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	105119483	105119483	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106463848	106463848	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	108868161	108868161	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	118858298	118858298	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	119158251	119158251	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13219416	13219416	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143419209	143419209	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	14803435	14803435	+	IGR	SNP	G	T	T	rs36074786		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148872185	148872185	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149224195	149224195	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149224204	149224204	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149912119	149912120	+	IGR	INS	-	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152595110	152595110	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152789841	152789844	+	IGR	DEL	GTGT	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	154450704	154450704	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157610132	157610132	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157680018	157680018	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158389699	158389699	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163253452	163253452	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163559813	163559813	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163850334	163850334	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163850336	163850336	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166245961	166245961	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166765701	166765701	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166766230	166766230	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	17013348	17013348	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175013838	175013838	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175289745	175289745	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	184168716	184168716	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187229626	187229626	+	IGR	DEL	T	-	-	rs35570115		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191115700	191115700	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192045944	192045944	+	IGR	DEL	C	-	-	rs150709319	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	193726295	193726295	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	200832998	200832998	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221434601	221434601	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222573957	222573957	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	224767444	224767444	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	234465303	234465303	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	236056394	236056395	+	IGR	INS	-	T	T	rs147993682	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238180672	238180672	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242987908	242987909	+	IGR	INS	-	T	T	rs72503247		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247347374	247347374	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247835334	247835334	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	32306435	32306436	+	IGR	INS	-	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	39176518	39176518	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	41891100	41891101	+	IGR	DEL	TG	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	48506228	48506228	+	IGR	DEL	A	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	59644775	59644775	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	70996293	70996293	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	77165463	77165463	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	84753635	84753635	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	88230521	88230521	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	90844635	90844635	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	91490362	91490362	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	95041587	95041587	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12139521	12139521	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	18070870	18070870	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	26202318	26202318	+	IGR	DEL	T	-	-	rs77929867		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29588012	29588012	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	346052	346052	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38659621	38659621	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38944887	38944887	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	39382276	39382276	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	40287373	40287373	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	46788607	46788610	+	IGR	DEL	GTGA	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	51458116	51458116	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53411786	53411787	+	IGR	INS	-	C	C	rs146457262	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	55176714	55176714	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	5909153	5909153	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6968356	6968356	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10702163	10702163	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10872619	10872619	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10897983	10897983	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11119992	11119992	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11127380	11127380	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20616922	20616922	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123696	16123696	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16415346	16415346	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16487074	16487074	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	18802946	18802946	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	21622804	21622804	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	25732026	25732026	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	35093606	35093607	+	IGR	INS	-	A	A	rs145878557	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	35229400	35229401	+	IGR	DEL	CA	-	-	rs112185550		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	47714282	47714282	+	IGR	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	48684274	48684274	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103873799	103873799	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104112240	104112240	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104619685	104619685	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105295080	105295081	+	IGR	DNP	CT	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106831720	106831720	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117732793	117732793	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119472463	119472463	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	122811790	122811790	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	124724190	124724190	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	126580943	126580943	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	126580964	126580964	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127207515	127207515	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	137485568	137485568	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	155844423	155844423	+	IGR	SNP	C	A	A	rs75871120		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	156123152	156123153	+	IGR	INS	-	A	A	rs149506580	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	157504469	157504469	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	157794639	157794639	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162362308	162362308	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162363018	162363018	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168236809	168236809	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	171739953	171739953	+	IGR	DEL	T	-	-	rs113511890		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	174725815	174725815	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	178042591	178042591	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	179923443	179923443	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	184882932	184882932	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	199866955	199866955	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	209937556	209937557	+	IGR	DNP	CA	AG	AG			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21881482	21881482	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	219063009	219063009	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	239742073	239742073	+	IGR	DEL	T	-	-	rs71928479		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	239743931	239743931	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	35669506	35669506	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	372437	372437	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4562541	4562541	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49489771	49489771	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	5273890	5273890	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52798085	52798085	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58507797	58507797	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	6333461	6333462	+	IGR	INS	-	T	T	rs150490401	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	6636460	6636460	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	67103432	67103432	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	67898314	67898314	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	69113332	69113332	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	70329752	70329752	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	7543051	7543051	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	79324351	79324351	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81424755	81424755	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	85329539	85329539	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	88459020	88459021	+	IGR	INS	-	TCC	TCC	rs147503331	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800198	91800198	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91913495	91913495	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	104221482	104221482	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	109983348	109983348	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	112864676	112864676	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116187106	116187106	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116306385	116306385	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117128155	117128155	+	IGR	SNP	G	T	T	rs116496194	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	122036420	122036420	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	122769329	122769329	+	IGR	SNP	C	G	G	rs113771589	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	125396690	125396691	+	IGR	DEL	CA	-	-	rs112812202		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146075114	146075114	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148704170	148704170	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	157632485	157632485	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161908942	161908942	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	172597833	172597833	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	172994984	172994984	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	175695410	175695410	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	178202831	178202831	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	178211364	178211364	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	179887151	179887151	+	IGR	SNP	T	C	C	rs141514427	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180041183	180041183	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	18924139	18924139	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	190433338	190433338	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31495751	31495751	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	5157492	5157492	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	63128473	63128473	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	70035349	70035349	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	70189403	70189403	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75571131	75571131	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75857276	75857276	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80265748	80265748	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	900227	900227	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96338251	96338251	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	105692649	105692649	+	IGR	SNP	G	A	A	rs112759152		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	111866558	111866558	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	113378992	113378992	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	118580561	118580561	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	121591506	121591507	+	IGR	DEL	TT	-	-	rs71597082		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	122997640	122997641	+	IGR	INS	-	T	T	rs144824439	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	12929396	12929396	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	145766734	145766734	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	151948502	151948502	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	153535245	153535245	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165440792	165440792	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	166521687	166521687	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	168477169	168477170	+	IGR	INS	-	A	A	rs143031129	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	168842506	168842506	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17072612	17072612	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	180325847	180325847	+	IGR	SNP	G	T	T	rs139837072	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18413511	18413511	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190313284	190313284	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190610595	190610595	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190648107	190648107	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190653618	190653618	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	20102109	20102109	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	23063931	23063931	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	31761747	31761747	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	42106	42106	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43588811	43588811	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	45872714	45872714	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	46417391	46417391	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4895911	4895911	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4896949	4896949	+	IGR	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49216088	49216088	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49553027	49553027	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49611	49611	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	55679615	55679615	+	IGR	DEL	C	-	-	rs33928443		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	61987849	61987849	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64141461	64141461	+	IGR	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65296974	65296974	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	67050139	67050139	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69170444	69170444	+	IGR	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70221010	70221010	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70276729	70276729	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70884844	70884844	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9115067	9115067	+	IGR	SNP	C	A	A	rs147621641	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9431125	9431125	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	96083077	96083077	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	97133959	97133959	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105502868	105502868	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110284263	110284263	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12486591	12486591	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	137956432	137956433	+	IGR	DNP	GG	TT	TT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144288724	144288724	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15071216	15071216	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	151762377	151762377	+	IGR	DEL	A	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	161709457	161709457	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	163136275	163136275	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	19199804	19199804	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23304209	23304209	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24786891	24786891	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	26071814	26071815	+	IGR	DEL	TG	-	-	rs71603245		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882534	29882534	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	31140165	31140165	+	IGR	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	34189961	34189961	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	42135564	42135565	+	IGR	INS	-	A	A	rs140444981	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	46324252	46324252	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	51978692	51978692	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56718848	56718848	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5842687	5842687	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	82184461	82184461	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	87219982	87219982	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	87791228	87791228	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	96392460	96392460	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	121975150	121975150	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	1238275	1238276	+	IGR	DNP	CC	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	12456561	12456561	+	IGR	DEL	G	-	-	rs149002064		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	12665172	12665172	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	138027822	138027822	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	1402964	1402964	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	153219962	153219962	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	156630637	156630638	+	IGR	INS	-	T	T	rs139533804	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	171048954	171048954	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	23549717	23549718	+	IGR	INS	-	TGAG	TGAG			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	23856863	23856863	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	26701563	26701564	+	IGR	DNP	GG	TT	TT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27375790	27375790	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29150168	29150168	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29604130	29604130	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	30365822	30365822	+	IGR	DEL	A	-	-	rs35877206		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	37012828	37012828	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	39088593	39088594	+	IGR	INS	-	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	39926363	39926363	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49118266	49118266	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50880463	50880463	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57970859	57970859	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58584358	58584358	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	6765822	6765822	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72295547	72295547	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	7481345	7481345	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	82732446	82732446	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	86076451	86076451	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10491238	10491238	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10819509	10819509	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	116245520	116245520	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	119880937	119880937	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124985194	124985194	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131578700	131578700	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	137807423	137807423	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141164442	141164442	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141188299	141188299	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144702320	144702320	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152951259	152951259	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	153098932	153098932	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	153169464	153169465	+	IGR	DNP	GG	TC	TC			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	3103217	3103217	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31477278	31477278	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	36011110	36011110	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	50287910	50287910	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	50325278	50325278	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	51913219	51913219	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52204806	52204806	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52757369	52757369	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53861417	53861417	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56372619	56372619	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56570349	56570349	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56754338	56754338	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216900	57216901	+	IGR	DNP	CA	AT	AT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57245388	57245388	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57393496	57393496	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57656980	57656980	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57661524	57661524	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57932853	57932853	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61077341	61077341	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61819744	61819744	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61829969	61829969	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61830447	61830447	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61830483	61830483	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62499138	62499138	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63020585	63020585	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63032690	63032691	+	IGR	DNP	GG	TT	TT			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65277558	65277558	+	IGR	SNP	C	G	G	rs147500012	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	67715820	67715821	+	IGR	DEL	AT	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	68675916	68675916	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	7117913	7117913	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	76166980	76166980	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88366439	88366439	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	93776208	93776208	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9583347	9583347	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	104408342	104408343	+	IGR	DEL	AA	-	-	rs35659235		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	108750333	108750333	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	110779284	110779284	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	114583762	114583762	+	IGR	SNP	G	T	T	rs146608950	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	118257598	118257598	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	127504630	127504630	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130052775	130052776	+	IGR	DEL	AA	-	-	rs138917767		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132321159	132321160	+	IGR	INS	-	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132816418	132816418	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134745614	134745614	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134906172	134906173	+	IGR	DEL	CC	-	-	rs35650325		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136086790	136086790	+	IGR	DEL	G	-	-	rs11287842		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137515336	137515337	+	IGR	INS	-	T	T	rs75519803		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138507983	138507986	+	IGR	DEL	TTAG	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138590457	138590460	+	IGR	DEL	TTCT	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138671629	138671629	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138958883	138958883	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	144473996	144473996	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	34519891	34519891	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	34731992	34731992	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	35764027	35764027	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	40996074	40996074	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47014602	47014602	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47090840	47090840	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50378066	50378066	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	60925259	60925260	+	IGR	DEL	CA	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	66290358	66290358	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	69189700	69189700	+	IGR	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	81818712	81818712	+	IGR	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83281664	83281664	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	84353983	84353983	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	91302734	91302737	+	IGR	DEL	AAAC	-	-	rs34901984		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	97142857	97142857	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98369004	98369004	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	102067639	102067639	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	104291781	104291781	+	IGR	SNP	C	G	G	rs144876142	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	105622129	105622129	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	105790151	105790151	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120526918	120526918	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120613632	120613632	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	125449935	125449935	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	14069251	14069251	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	141038893	141038893	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	16244041	16244041	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	17810951	17810951	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	24158887	24158887	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	31254039	31254039	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	35148305	35148305	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	35592866	35592866	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	37047075	37047075	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43314263	43314263	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44750488	44750488	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	45358761	45358761	+	IGR	SNP	T	C	C	rs78589151		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66480102	66480102	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66482245	66482245	+	IGR	SNP	A	G	G	rs79081929		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67293788	67293788	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68393641	68393641	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68415761	68415761	+	IGR	SNP	G	T	T	rs139483630		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68417807	68417807	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68417917	68417917	+	IGR	SNP	A	T	T	rs66853417		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68420752	68420752	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76089553	76089553	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78034984	78034984	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90473620	90473620	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100212104	100212104	+	IGR	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100594900	100594900	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100793114	100793114	+	IGR	DEL	T	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	101429290	101429290	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	103020882	103020882	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	105661719	105661719	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106808261	106808261	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106951470	106951470	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	108208993	108208993	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	113448420	113448420	+	IGR	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115010396	115010397	+	IGR	INS	-	CT	CT	rs72144859		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	116788132	116788132	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120420282	120420282	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	121205499	121205499	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	121559789	121559789	+	IGR	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	124461290	124461290	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	124642130	124642130	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	125391907	125391907	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	125391924	125391924	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	125871905	125871905	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	129686207	129686207	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	129722028	129722028	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	130106168	130106168	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134746142	134746142	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135154881	135154881	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135160848	135160848	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136960526	136960527	+	IGR	INS	-	CGCG	CGCG			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	137570816	137570816	+	IGR	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	138312758	138312758	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	138529245	138529245	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139479186	139479186	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	140148077	140148077	+	IGR	SNP	G	A	A	rs138002299	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141850515	141850515	+	IGR	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	142760652	142760653	+	IGR	INS	-	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	142889741	142889741	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	143113027	143113027	+	IGR	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	143698774	143698774	+	IGR	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144337923	144337923	+	IGR	SNP	A	G	G	rs112268595		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144337943	144337943	+	IGR	SNP	T	C	C	rs113028137	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144776265	144776265	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145967761	145967761	+	IGR	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146280405	146280405	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146318429	146318429	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146680942	146680942	+	IGR	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146685949	146685950	+	IGR	INS	-	TTC	TTC			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146764151	146764151	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147119444	147119444	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147133915	147133915	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147468560	147468560	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147513575	147513575	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	148185561	148185561	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	148202067	148202067	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	148893018	148893018	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	149459672	149459672	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	149852027	149852027	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150161893	150161893	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150367441	150367441	+	IGR	DEL	A	-	-	rs34336006		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150395181	150395181	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150432708	150432708	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150663431	150663431	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151189261	151189261	+	IGR	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	152870663	152870663	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	22454078	22454078	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25574842	25574842	+	IGR	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25664106	25664106	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	35169151	35169151	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	35779987	35779987	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	36767026	36767026	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	39724713	39724713	+	IGR	SNP	G	T	T	rs144629317	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	42346741	42346741	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52004947	52004947	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	5463242	5463242	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	54699086	54699086	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	57703736	57703736	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	57793405	57793405	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	57960697	57960697	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	62079737	62079737	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	62519587	62519587	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63653530	63653530	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63870509	63870509	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65296047	65296048	+	IGR	DNP	CC	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68004424	68004424	+	IGR	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68004959	68004959	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68275285	68275285	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	69303394	69303394	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	73596701	73596701	+	IGR	DEL	A	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74966684	74966684	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78478914	78478914	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79816758	79816758	+	IGR	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	80160700	80160700	+	IGR	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	84727443	84727443	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	84952013	84952013	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	85339941	85339941	+	IGR	SNP	G	A	A	rs73630501	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	85340306	85340306	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	88622547	88622547	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89368367	89368367	+	IGR	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	90035106	90035106	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92076975	92076975	+	IGR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92477350	92477350	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	94804783	94804783	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97507111	97507111	+	IGR	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97507512	97507512	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97746891	97746891	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97919864	97919864	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13354603	13354603	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13470518	13470518	+	IGR	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59005035	59005035	+	IGR	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59006529	59006529	+	IGR	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59007866	59007866	+	IGR	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59021482	59021482	+	IGR	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL2	57216	broad.mit.edu	37	1	160393760	160393760	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108315476	108315476	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82808182	82808183	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177648845	177648845	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VILL	50853	broad.mit.edu	37	3	38044811	38044811	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPRBP	9730	broad.mit.edu	37	3	51457152	51457152	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38857849	38857850	+	Intron	INS	-	A	A	rs111468558		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61048167	61048167	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP11P1	441818	broad.mit.edu	37	18	30091879	30091879	+	RNA	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP11P1	441818	broad.mit.edu	37	18	30092202	30092203	+	RNA	DNP	CC	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP2NL	164684	broad.mit.edu	37	22	42415661	42415661	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY4	57705	broad.mit.edu	37	10	49994685	49994685	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR19	57728	broad.mit.edu	37	4	39276448	39276448	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54362041	54362041	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPF3	644150	broad.mit.edu	37	7	29943995	29943995	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP3	8838	broad.mit.edu	37	6	112385761	112385761	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK3	65267	broad.mit.edu	37	X	54249934	54249934	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78979543	78979543	+	Intron	DEL	T	-	-	rs71726401		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWP2	11060	broad.mit.edu	37	16	69942788	69942788	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31611315	31611315	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIAP	331	broad.mit.edu	37	X	123022382	123022382	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168099943	168099943	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR7	343702	broad.mit.edu	37	20	30584859	30584859	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB3	79842	broad.mit.edu	37	11	62519825	62519825	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB9	221504	broad.mit.edu	37	6	33422863	33422863	+	5'UTR	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H14	79882	broad.mit.edu	37	14	89041146	89041146	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC4H2	55906	broad.mit.edu	37	X	64250710	64250710	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC9	84240	broad.mit.edu	37	5	80604290	80604290	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC15	158866	broad.mit.edu	37	X	74725692	74725692	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31815884	31815884	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77767626	77767626	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP36L1	677	broad.mit.edu	37	14	69259441	69259441	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT4	79698	broad.mit.edu	37	8	40720195	40720195	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF193	7746	broad.mit.edu	37	6	28194853	28194853	+	5'UTR	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF193	7746	broad.mit.edu	37	6	28195201	28195201	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF248	57209	broad.mit.edu	37	10	38121256	38121256	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF251	90987	broad.mit.edu	37	8	145947114	145947114	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF253	56242	broad.mit.edu	37	19	20003006	20003006	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF2	7549	broad.mit.edu	37	2	95841833	95841833	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF2	7549	broad.mit.edu	37	2	95843205	95843205	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49671947	49671947	+	Silent	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF429	353088	broad.mit.edu	37	19	21720466	21720466	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF430	80264	broad.mit.edu	37	19	21240404	21240404	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF454	285676	broad.mit.edu	37	5	178391871	178391871	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF532	55205	broad.mit.edu	37	18	56651651	56651651	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31047973	31047973	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF549	256051	broad.mit.edu	37	19	58046558	58046558	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22375740	22375740	+	Intron	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF699	374879	broad.mit.edu	37	19	9406725	9406725	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF699	374879	broad.mit.edu	37	19	9408689	9408689	+	Intron	SNP	C	A	A	rs144916883	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF711	7552	broad.mit.edu	37	X	84523197	84523197	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134421668	134421668	+	Missense_Mutation	SNP	G	T	T	rs150700463	byFrequency	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF790	388536	broad.mit.edu	37	19	37314167	37314167	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF792	126375	broad.mit.edu	37	19	35449248	35449248	+	Missense_Mutation	SNP	C	G	G	rs142139829		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF862	643641	broad.mit.edu	37	7	149559371	149559371	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF90	7643	broad.mit.edu	37	19	20228727	20228727	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM4	65249	broad.mit.edu	37	19	13928235	13928235	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZW10	9183	broad.mit.edu	37	11	113619168	113619168	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42957061	42957061	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55062252	55062252	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31300746	31300746	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	74668971	74668971	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101490043	101490043	+	5'Flank	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22362877	22362877	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22591467	22591467	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	31289035	31289035	+	5'Flank	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	73079198	73079198	+	RNA	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	80775842	80775842	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25424069	25424069	+	5'Flank	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25485056	25485056	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	62555345	62555345	+	5'Flank	DEL	C	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	80590153	80590153	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84947231	84947231	+	5'Flank	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32062934	32062935	+	5'Flank	DNP	CC	AA	AA			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34981260	34981260	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34981823	34981823	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	45158320	45158320	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22217706	22217709	+	Intron	DEL	ACAC	-	-	rs150814658		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	40040742	40040742	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	44840303	44840303	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	44993030	44993030	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	5762567	5762567	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22785179	22785179	+	RNA	SNP	G	C	C	rs76240421		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32516131	32516131	+	5'Flank	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143148169	143148169	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148878362	148878362	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	565336	565336	+	5'Flank	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23170443	23170443	+	RNA	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10458619	10458619	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	48157991	48157991	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130000227	130000227	+	RNA	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133064260	133064261	+	Intron	INS	-	C	C	rs148351345	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186656377	186656377	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186672189	186672189	+	Intron	SNP	A	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186696433	186696433	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	216706088	216706089	+	Intron	DEL	AA	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78384618	78384618	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89168718	89168718	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90044192	90044192	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90078039	90078039	+	RNA	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90219283	90219283	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90249312	90249312	+	RNA	DEL	G	-	-			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90420091	90420091	+	Intron	SNP	T	G	G	rs146894360	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95614079	95614079	+	5'Flank	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	174328027	174328027	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180491706	180491706	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14665352	14665352	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	150711574	150711574	+	Intron	SNP	T	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	85165129	85165129	+	Intron	SNP	A	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	151470732	151470732	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	17354546	17354546	+	RNA	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	175574017	175574017	+	RNA	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20936436	20936436	+	RNA	SNP	A	G	G	rs138225046	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	43020742	43020742	+	5'Flank	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	10186113	10186113	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	19182968	19182968	+	5'Flank	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9809969	9809969	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9908853	9908853	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	106205041	106205041	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	106272326	106272326	+	Intron	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124603790	124603790	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142161687	142161687	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142176359	142176359	+	Intron	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142180500	142180500	+	Intron	SNP	C	G	G			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142223722	142223722	+	Intron	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142326476	142326476	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143140451	143140451	+	Intron	SNP	C	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	10396337	10396337	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12449102	12449102	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12482315	12482315	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	32803054	32803054	+	Intron	SNP	A	G	G	rs138512604	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58136479	58136479	+	Intron	SNP	G	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109393286	109393286	+	Intron	SNP	A	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66458266	66458266	+	5'Flank	SNP	A	G	G	rs902932		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	10725	10725	+	RNA	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	11295	11295	+	RNA	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	11559	11559	+	RNA	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	13063	13063	+	RNA	SNP	G	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	4786	4786	+	5'Flank	SNP	T	C	C			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	103183123	103183123	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79553173	79553173	+	Intron	SNP	C	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
