Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7380510	7380511	+	Intron	DEL	TT	-	-	rs59025287		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215848372	215848372	+	Silent	SNP	T	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48396088	48396088	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48734260	48734260	+	Intron	SNP	T	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC4	10257	broad.mit.edu	37	13	95714858	95714859	+	Intron	INS	-	C	C	rs1751033	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC4	10257	broad.mit.edu	37	13	95727523	95727523	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35634089	35634089	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31676334	31676334	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCS	84680	broad.mit.edu	37	11	44097139	44097139	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOXL	55289	broad.mit.edu	37	2	111789245	111789245	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236906437	236906437	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236906446	236906446	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39624684	39624684	+	Nonsense_Mutation	SNP	G	T	T	rs150053966	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106919127	106919127	+	Intron	SNP	C	T	T	rs79793232	byFrequency;by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107131492	107131492	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33596042	33596042	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43777382	43777382	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK4	79934	broad.mit.edu	37	19	41209671	41209671	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167819935	167819936	+	Intron	INS	-	TGTGTA	TGTGTA	rs79342040	byFrequency	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADNP2	22850	broad.mit.edu	37	18	77895267	77895267	+	Silent	SNP	C	T	T	rs141229292		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRB2	154	broad.mit.edu	37	5	148206398	148206398	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147855157	147855157	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFP	174	broad.mit.edu	37	4	74308042	74308042	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105409860	105409860	+	Silent	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77984062	77984062	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	244006380	244006380	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH4A1	8659	broad.mit.edu	37	1	19202827	19202827	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73675893	73675893	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38471802	38471802	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95650234	95650234	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26620592	26620592	+	Intron	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112154531	112154531	+	Intron	DEL	G	-	-	rs146946846		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21233632	21233632	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33391544	33391544	+	Intron	SNP	C	G	G	rs145343414	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF17	9828	broad.mit.edu	37	11	73070953	73070953	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARR3	407	broad.mit.edu	37	X	69496325	69496325	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3028116	3028116	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31324235	31324235	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG12	9140	broad.mit.edu	37	5	115168268	115168268	+	Intron	DEL	C	-	-	rs68015035		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42474301	42474301	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6AP2	10159	broad.mit.edu	37	X	40458922	40458923	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPAF1	64756	broad.mit.edu	37	1	47118364	47118364	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142231062	142231063	+	Intron	INS	-	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	70227696	70227696	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11030640	11030640	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11042995	11042995	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11043892	11043892	+	Intron	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11046419	11046419	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11046912	11046912	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11048510	11048510	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ1B	9031	broad.mit.edu	37	7	72856981	72856981	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS4	585	broad.mit.edu	37	15	73001918	73001918	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDKRB2	624	broad.mit.edu	37	14	96707170	96707170	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34079868	34079868	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	95881249	95881249	+	Intron	DEL	T	-	-	rs11326735		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43292652	43292652	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL2	254240	broad.mit.edu	37	22	32819844	32819844	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140477740	140477740	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A3	54718	broad.mit.edu	37	6	26430911	26430911	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf137	26098	broad.mit.edu	37	10	127431758	127431758	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf26	84190	broad.mit.edu	37	12	82824741	82824741	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	81209334	81209334	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf51	352909	broad.mit.edu	37	19	55677335	55677335	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf112	55732	broad.mit.edu	37	1	169743863	169743864	+	Intron	INS	-	A	A	rs148914091	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf150	148823	broad.mit.edu	37	1	247726866	247726866	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34636319	34636319	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf9	51430	broad.mit.edu	37	1	172571920	172571920	+	Silent	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9510545	9510545	+	3'UTR	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf107	388799	broad.mit.edu	37	20	55111465	55111465	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf196	149840	broad.mit.edu	37	20	5844057	5844057	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf3	57136	broad.mit.edu	37	20	24954301	24954301	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	45941862	45941862	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf43	51233	broad.mit.edu	37	22	23956425	23956425	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf28	51374	broad.mit.edu	37	2	27436173	27436173	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf57	165100	broad.mit.edu	37	2	232458213	232458213	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf41	60684	broad.mit.edu	37	4	184605296	184605296	+	Splice_Site	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf36	285600	broad.mit.edu	37	5	93489584	93489584	+	3'UTR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120768588	120768588	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57422712	57422712	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140953512	140953512	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81695888	81695888	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG2	10369	broad.mit.edu	37	22	36991060	36991061	+	Intron	INS	-	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCRL	10203	broad.mit.edu	37	2	188217032	188217032	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCRL	10203	broad.mit.edu	37	2	188228028	188228028	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93101848	93101848	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2998224	2998224	+	5'UTR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP4	837	broad.mit.edu	37	11	104825561	104825561	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC30	728621	broad.mit.edu	37	1	43110454	43110454	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC34	91057	broad.mit.edu	37	11	27371802	27371802	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC36	339834	broad.mit.edu	37	3	49294549	49294549	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC41	51134	broad.mit.edu	37	12	94818041	94818041	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC46	201134	broad.mit.edu	37	17	63746794	63746794	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85627344	85627344	+	Intron	SNP	G	A	A	rs12269739	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL11	6356	broad.mit.edu	37	17	32614718	32614718	+	3'UTR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB1	891	broad.mit.edu	37	5	68470998	68470998	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74491052	74491052	+	Intron	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD177	57126	broad.mit.edu	37	19	43859868	43859868	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158300520	158300520	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD209	30835	broad.mit.edu	37	19	7810117	7810117	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD33	945	broad.mit.edu	37	19	51729384	51729384	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227504937	227504937	+	5'UTR	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24537780	24537780	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883732	21883732	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44843315	44843315	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202698422	202698423	+	Intron	INS	-	TCTTCTTCT	TCTTCTTCT	rs66588345		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL3	51265	broad.mit.edu	37	5	133642367	133642367	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL5	6792	broad.mit.edu	37	X	18631449	18631449	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM20	125931	broad.mit.edu	37	19	45024466	45024466	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM4	1089	broad.mit.edu	37	19	42126009	42126009	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPI	2491	broad.mit.edu	37	X	100387152	100387152	+	Intron	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP120	153241	broad.mit.edu	37	5	122685675	122685675	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55890527	55890527	+	Intron	SNP	C	T	T	rs74782302	byFrequency;by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40049592	40049593	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21869215	21869215	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIT1	1118	broad.mit.edu	37	1	203192352	203192352	+	Silent	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP4	10970	broad.mit.edu	37	12	106633563	106633563	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143018394	143018394	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN8	9073	broad.mit.edu	37	21	31587489	31587489	+	3'UTR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLNK	116449	broad.mit.edu	37	4	10539297	10539297	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTCL1	8218	broad.mit.edu	37	22	19184160	19184160	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87679506	87679506	+	Intron	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNIH3	149111	broad.mit.edu	37	1	224872688	224872688	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT7	29883	broad.mit.edu	37	8	17092352	17092352	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17486954	17486954	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41419071	41419071	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBL	23242	broad.mit.edu	37	7	51095389	51095389	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103400558	103400558	+	Intron	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103471678	103471678	+	Splice_Site	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70637869	70637869	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139889974	139889974	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A3BP	10087	broad.mit.edu	37	5	74670576	74670576	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107422444	107422444	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10100096	10100097	+	Intron	DNP	CC	AA	AA			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238280775	238280775	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125506587	125506587	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRP	1401	broad.mit.edu	37	1	159683210	159683210	+	3'UTR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSAG1	158511	broad.mit.edu	37	X	151909135	151909135	+	Intron	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37319243	37319243	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	22929744	22929744	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143996675	143996675	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C19	1557	broad.mit.edu	37	10	96535174	96535174	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C9	1559	broad.mit.edu	37	10	96701516	96701516	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2J2	1573	broad.mit.edu	37	1	60366603	60366603	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F22	126410	broad.mit.edu	37	19	15658804	15658823	+	Intron	DEL	GAGGGAGAGAGTGTGTGTGT	-	-	rs36213762		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP7B1	9420	broad.mit.edu	37	8	65508617	65508617	+	3'UTR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85906205	85906205	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85906211	85906211	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8L1	139425	broad.mit.edu	37	X	27998107	27998107	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50319210	50319210	+	Intron	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6647086	6647086	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6647528	6647528	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX26B	203522	broad.mit.edu	37	X	134690115	134690115	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1A	57706	broad.mit.edu	37	9	126643100	126643100	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50213372	50213372	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS9	10170	broad.mit.edu	37	2	169938310	169938310	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX16	8449	broad.mit.edu	37	6	30633124	30633124	+	Intron	SNP	T	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX57	90957	broad.mit.edu	37	2	39038463	39038463	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96502845	96502845	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO3	1735	broad.mit.edu	37	14	102028007	102028007	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISC1	27185	broad.mit.edu	37	1	232147907	232147907	+	Intron	DEL	G	-	-	rs35392101		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83585468	83585468	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21655913	21655913	+	Silent	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11684547	11684547	+	Intron	SNP	T	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11790374	11790374	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11840709	11840709	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169126491	169126491	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99535354	99535354	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116066789	116066789	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD2	1813	broad.mit.edu	37	11	113295303	113295303	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD5	1816	broad.mit.edu	37	4	9783868	9783868	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28588512	28588512	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29055744	29055744	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP22	56940	broad.mit.edu	37	6	325805	325805	+	Intron	SNP	T	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUXA	503835	broad.mit.edu	37	19	57670677	57670677	+	Intron	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102516551	102516551	+	Intron	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131760398	131760398	+	Intron	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDC4	23644	broad.mit.edu	37	16	67911567	67911567	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDNRB	1910	broad.mit.edu	37	13	78513106	78513108	+	Intron	DEL	CAC	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD2	9343	broad.mit.edu	37	17	42931994	42931994	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFL6	25975	broad.mit.edu	37	X	13641860	13641860	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHBP1	23301	broad.mit.edu	37	2	63217959	63217959	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37299162	37299162	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELP4	26610	broad.mit.edu	37	11	31648715	31648715	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELSPBP1	64100	broad.mit.edu	37	19	48519714	48519729	+	Intron	DEL	TTTCTTTCCTTCTTTC	-	-	rs112170164	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENO3	2027	broad.mit.edu	37	17	4859168	4859178	+	Intron	DEL	CTGTCTCTGCC	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX2	10495	broad.mit.edu	37	X	129790501	129790501	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP6	133121	broad.mit.edu	37	4	185096296	185096296	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46574181	46574182	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4A	64097	broad.mit.edu	37	5	111642524	111642527	+	Intron	DEL	AATT	-	-	rs137882537		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB42	2038	broad.mit.edu	37	15	43500962	43500962	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142568573	142568573	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPSTI1	94240	broad.mit.edu	37	13	43500181	43500182	+	Intron	INS	-	AGGA	AGGA			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103527867	103527867	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC8	1161	broad.mit.edu	37	5	60186677	60186677	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESF1	51575	broad.mit.edu	37	20	13714431	13714431	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT1	2131	broad.mit.edu	37	8	118831993	118831993	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72211810	72211810	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57420790	57420791	+	Intron	INS	-	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139155211	139155211	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM138B	654412	broad.mit.edu	37	2	114335678	114335678	+	RNA	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM163A	148753	broad.mit.edu	37	1	179782862	179782862	+	Intron	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM189A1	23359	broad.mit.edu	37	15	29526830	29526830	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62153761	62153761	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM35B2	439965	broad.mit.edu	37	10	47416929	47416929	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34961433	34961433	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55B	120406	broad.mit.edu	37	11	114550400	114550400	+	Silent	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12400819	12400819	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163044886	163044887	+	Intron	INS	-	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92085981	92085981	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92570949	92570949	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127681174	127681174	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15928552	15928552	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW7	55294	broad.mit.edu	37	4	153247364	153247364	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FECH	2235	broad.mit.edu	37	18	55221585	55221585	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	137756723	137756723	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIG4	9896	broad.mit.edu	37	6	110037827	110037827	+	Intron	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152276134	152276134	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152277156	152277156	+	Silent	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40330	645784	broad.mit.edu	37	2	89075539	89075539	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLRT2	23768	broad.mit.edu	37	14	86089394	86089394	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240306915	240306915	+	Intron	SNP	A	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240307250	240307250	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216242739	216242739	+	Intron	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159650819	159650819	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN4	121643	broad.mit.edu	37	12	109723080	109723081	+	Intron	DEL	GC	-	-	rs72228171		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29650528	29650528	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29651121	29651121	+	Intron	SNP	G	A	A	rs145422945		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUNDC2	65991	broad.mit.edu	37	X	154282908	154282908	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151358394	151358394	+	Silent	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27184976	27184976	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46125833	46125833	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16261170	16261170	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173232986	173232986	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22820551	22820551	+	3'UTR	DEL	G	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120569844	120569844	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIF	2694	broad.mit.edu	37	11	59610572	59610572	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPR	2766	broad.mit.edu	37	6	16254989	16254989	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC4	2239	broad.mit.edu	37	X	132458593	132458593	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153157751	153157760	+	Intron	DEL	GAGTGTGTGT	-	-	rs72394542		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA3	2892	broad.mit.edu	37	X	122616718	122616718	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37337884	37337884	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	10049098	10049098	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104432892	104432892	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP2	80852	broad.mit.edu	37	3	14561794	14561794	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108673616	108673616	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HADH	3033	broad.mit.edu	37	4	108942953	108942953	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR1	26762	broad.mit.edu	37	5	156459917	156459917	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18688152	18688152	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18801912	18801912	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDC	3067	broad.mit.edu	37	15	50545731	50545731	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236749753	236749753	+	Splice_Site	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5A	25938	broad.mit.edu	37	14	31782112	31782113	+	Intron	INS	-	AAAAG	AAAAG	rs143793771	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD2	143279	broad.mit.edu	37	10	93258885	93258885	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28443559	28443559	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HORMAD2	150280	broad.mit.edu	37	22	30501154	30501154	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HP1BP3	50809	broad.mit.edu	37	1	21073988	21073988	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100374754	100374754	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	25884798	25884801	+	Intron	DEL	TCTC	-	-	rs66595275	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26044201	26044201	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53652847	53652852	+	Intron	DEL	GCCGGT	-	-	rs11091285	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFIT1B	439996	broad.mit.edu	37	10	91144373	91144373	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18581012	18581012	+	Intron	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL10	3586	broad.mit.edu	37	1	206945577	206945577	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL19	29949	broad.mit.edu	37	1	207009977	207009977	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL4I1	259307	broad.mit.edu	37	19	50392964	50392964	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCB1	9657	broad.mit.edu	37	3	121491545	121491545	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156510566	156510566	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS4	8471	broad.mit.edu	37	X	107976364	107976364	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31393054	31393054	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52814365	52814365	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35186420	35186420	+	Intron	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124164921	124164921	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163360882	163360882	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155711558	155711558	+	Silent	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215345469	215345469	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN4	3783	broad.mit.edu	37	19	44281477	44281478	+	Intron	DEL	GG	-	-	rs72282703		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNS2	3788	broad.mit.edu	37	8	99441275	99441275	+	Silent	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196553118	196553118	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36663727	36663727	+	Intron	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36721970	36721970	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDELC2	143888	broad.mit.edu	37	11	108348368	108348368	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10610244	10610244	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0427	9811	broad.mit.edu	37	18	46062646	46062647	+	5'Flank	DNP	CT	AG	AG			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42442349	42442349	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1958	158405	broad.mit.edu	37	9	115337360	115337360	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57966311	57966311	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL1	3802	broad.mit.edu	37	19	55282330	55282330	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55272037	55272037	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55330201	55330201	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL3	26249	broad.mit.edu	37	5	137045461	137045461	+	Silent	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86869504	86869504	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT82	3888	broad.mit.edu	37	12	52788708	52788708	+	3'UTR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP6-2	337967	broad.mit.edu	37	21	31971050	31971050	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP9-8	83901	broad.mit.edu	37	17	39394381	39394381	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR1	8844	broad.mit.edu	37	17	25919562	25919562	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129674499	129674499	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107746311	107746311	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN1	3933	broad.mit.edu	37	9	138417022	138417022	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPRE1	64175	broad.mit.edu	37	1	43220689	43220689	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPREL1	55214	broad.mit.edu	37	3	189705288	189705288	+	Intron	DEL	G	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGTN	1939	broad.mit.edu	37	1	206766826	206766827	+	Intron	DEL	GA	-	-	rs113332386		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL5	222662	broad.mit.edu	37	6	35787141	35787141	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFP	10186	broad.mit.edu	37	13	40174995	40174995	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55105822	55105822	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55106759	55106759	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIM2	3982	broad.mit.edu	37	19	51890699	51890699	+	5'UTR	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPA	3988	broad.mit.edu	37	10	90982215	90982215	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC349196	349196	broad.mit.edu	37	8	7215484	7215484	+	5'Flank	SNP	C	A	A	rs11779457	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC441666	441666	broad.mit.edu	37	10	42832887	42832887	+	RNA	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC493754	493754	broad.mit.edu	37	7	66019485	66019485	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC550112	550112	broad.mit.edu	37	4	68582090	68582090	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC550643	550643	broad.mit.edu	37	X	56788343	56788343	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91814973	91814973	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC727677	727677	broad.mit.edu	37	8	128496359	128496362	+	5'Flank	DEL	AGGA	-	-	rs141487416	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23165468	23165468	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62598867	62598867	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPP	4026	broad.mit.edu	37	3	188295546	188295549	+	Intron	DEL	TTCG	-	-	rs72048204		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT1	26103	broad.mit.edu	37	10	85992129	85992129	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141115516	141115516	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141330703	141330704	+	Intron	DEL	AA	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC3B	116135	broad.mit.edu	37	3	26751695	26751695	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC50	123872	broad.mit.edu	37	16	84203521	84203521	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ4	344657	broad.mit.edu	37	3	169540089	169540089	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101596965	101596965	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM3	347731	broad.mit.edu	37	10	68687247	68687247	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77563362	77563362	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM14B	149986	broad.mit.edu	37	20	60706504	60706504	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYN	4067	broad.mit.edu	37	8	56891274	56891274	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL1	84569	broad.mit.edu	37	10	29581544	29581544	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB10	139422	broad.mit.edu	37	X	27839405	27839405	+	5'UTR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB1	4112	broad.mit.edu	37	X	30269224	30269224	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140996709	140996709	+	3'UTR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	78937696	78937697	+	Intron	INS	-	G	G	rs141479541	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1B1	11253	broad.mit.edu	37	9	139997282	139997285	+	Intron	DEL	ACAC	-	-	rs71835567		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP6	4135	broad.mit.edu	37	11	75356120	75356120	+	Intron	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165110849	165110849	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECP2	4204	broad.mit.edu	37	X	153297830	153297830	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED4	29079	broad.mit.edu	37	13	48653923	48653923	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126778734	126778734	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MET	4233	broad.mit.edu	37	7	116415240	116415240	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEX3C	51320	broad.mit.edu	37	18	48703218	48703218	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC72080	389538	broad.mit.edu	37	7	97515292	97515292	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC72080	389538	broad.mit.edu	37	7	97576874	97576874	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12225804	12225804	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MID1	4281	broad.mit.edu	37	X	10491270	10491270	+	Intron	SNP	A	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR622	693207	broad.mit.edu	37	13	90882852	90882852	+	5'Flank	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR891B	100126304	broad.mit.edu	37	X	145082647	145082647	+	RNA	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR892A	100126342	broad.mit.edu	37	X	145078225	145078225	+	RNA	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23811062	23811062	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMD2	221938	broad.mit.edu	37	7	4949570	4949570	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89209556	89209556	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP27	64066	broad.mit.edu	37	11	102573850	102573850	+	Splice_Site	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS3	27304	broad.mit.edu	37	20	49576281	49576281	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH8	54737	broad.mit.edu	37	13	20222515	20222515	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSR1	4481	broad.mit.edu	37	8	16032713	16032713	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRA	4482	broad.mit.edu	37	8	10102618	10102618	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTA2	9219	broad.mit.edu	37	11	62362134	62362134	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR11	10903	broad.mit.edu	37	1	149908042	149908042	+	Intron	SNP	A	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29599481	29599481	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9000568	9000568	+	Splice_Site	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3229248	3229248	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL1	4603	broad.mit.edu	37	8	67477047	67477047	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL1	4603	broad.mit.edu	37	8	67492484	67492484	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108172929	108172929	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23884539	23884539	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK3	91807	broad.mit.edu	37	16	46766215	46766215	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26400946	26400946	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76545530	76545530	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1813026	1813026	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1842979	1842979	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	146233014	146233014	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF22P	285622	broad.mit.edu	37	5	85578382	85578382	+	5'UTR	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144596134	144596134	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145120424	145120424	+	Intron	DEL	T	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145120432	145120432	+	Intron	SNP	A	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBR1	4077	broad.mit.edu	37	17	41341942	41341942	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152427080	152427080	+	Silent	SNP	C	T	T	rs140688592	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21191365	21191365	+	Intron	SNP	T	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73575342	73575342	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NES	10763	broad.mit.edu	37	1	156640943	156640943	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFE2L3	9603	broad.mit.edu	37	7	26223439	26223439	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFXL1	152518	broad.mit.edu	37	4	47881042	47881042	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHLRC2	374354	broad.mit.edu	37	10	115664629	115664629	+	Silent	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHSL2	340527	broad.mit.edu	37	X	71264676	71264676	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHS	4810	broad.mit.edu	37	X	17739711	17739711	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	124979589	124979589	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKX6-1	4825	broad.mit.edu	37	4	85416877	85416877	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLE1	54475	broad.mit.edu	37	17	33463440	33463440	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247608106	247608106	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMBR	4829	broad.mit.edu	37	6	142397240	142397240	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMUR2	56923	broad.mit.edu	37	5	151775020	151775020	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL11	25926	broad.mit.edu	37	17	65717512	65717512	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOLC1	9221	broad.mit.edu	37	10	103922042	103922042	+	3'UTR	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120558252	120558252	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	A	A	rs11554290		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG2	9542	broad.mit.edu	37	5	139232788	139232788	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84744686	84744686	+	Intron	SNP	T	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50692594	50692594	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131550307	131550307	+	Intron	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP160	23279	broad.mit.edu	37	11	47843375	47843375	+	Splice_Site	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP37	79023	broad.mit.edu	37	12	102512127	102512127	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP37	79023	broad.mit.edu	37	12	102512139	102512139	+	Intron	SNP	A	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP98	4928	broad.mit.edu	37	11	3707286	3707286	+	Silent	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28171515	28171515	+	Intron	SNP	G	T	T	rs143579167	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128692649	128692649	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167646179	167646179	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50952126	50952126	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50952128	50952128	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN5	221391	broad.mit.edu	37	6	47775891	47775891	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A4	283297	broad.mit.edu	37	11	6898812	6898812	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Q1	219960	broad.mit.edu	37	11	57995391	57995391	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Q1	219960	broad.mit.edu	37	11	57996246	57996246	+	Silent	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11A1	26531	broad.mit.edu	37	6	29394424	29394424	+	3'UTR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1K1	392392	broad.mit.edu	37	9	125562401	125562401	+	5'Flank	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M1P	388762	broad.mit.edu	37	1	248285330	248285331	+	5'Flank	DNP	TG	GC	GC			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T6	254879	broad.mit.edu	37	1	248551426	248551426	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52J3	119679	broad.mit.edu	37	11	5068347	5068347	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6B3	150681	broad.mit.edu	37	2	240984737	240984737	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K2	81448	broad.mit.edu	37	1	158670181	158670181	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B2	26595	broad.mit.edu	37	11	124252675	124252675	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL8	114882	broad.mit.edu	37	12	76780440	76780440	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29604479	29604479	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9523408	9523408	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176811648	176811648	+	3'UTR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150840929	150840929	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX4	5078	broad.mit.edu	37	7	127254935	127254935	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55582372	55582372	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58299215	58299215	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99661647	99661647	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140189255	140189255	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140588872	140588872	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB3	56102	broad.mit.edu	37	5	140751895	140751895	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCYT1B	9468	broad.mit.edu	37	X	24690906	24690906	+	5'UTR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD7	79955	broad.mit.edu	37	10	102783726	102783726	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41967025	41967025	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57333080	57333080	+	Missense_Mutation	SNP	G	T	T	rs145933493	byFrequency	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKP	5214	broad.mit.edu	37	10	3147579	3147579	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF16	9767	broad.mit.edu	37	X	46898443	46898443	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF16	9767	broad.mit.edu	37	X	46913593	46913593	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA1	5255	broad.mit.edu	37	X	71825331	71825331	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB1	23187	broad.mit.edu	37	11	118495803	118495803	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHYHIPL	84457	broad.mit.edu	37	10	60996106	60996106	+	Intron	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGO	84720	broad.mit.edu	37	9	35091498	35091498	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PISD	23761	broad.mit.edu	37	22	32017928	32017928	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL4	143689	broad.mit.edu	37	11	94320540	94320540	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110535061	110535061	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51798748	51798748	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8628575	8628575	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16848117	16848117	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84563198	84563198	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84569352	84569352	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24766974	24766974	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLG	5428	broad.mit.edu	37	15	89868839	89868839	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3E	55718	broad.mit.edu	37	16	22330235	22330235	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130877663	130877663	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPT2	9374	broad.mit.edu	37	6	32122496	32122496	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAF2	11230	broad.mit.edu	37	X	48930132	48930132	+	Silent	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70980553	70980553	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM15	63977	broad.mit.edu	37	21	43259675	43259675	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47267458	47267458	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57262516	57262516	+	Intron	DEL	A	-	-	rs75873741		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57328907	57328907	+	Intron	SNP	C	G	G	rs113000665		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57398118	57398119	+	Intron	INS	-	T	T	rs147643173		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57499090	57499090	+	Intron	SNP	C	T	T	rs113814058		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD2	25865	broad.mit.edu	37	19	47181713	47181713	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRG3	79057	broad.mit.edu	37	X	150867176	150867176	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE	58497	broad.mit.edu	37	1	150997258	150997258	+	Silent	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE	58497	broad.mit.edu	37	1	150999611	150999612	+	Intron	INS	-	G	G	rs140963403	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43371376	43371376	+	Intron	SNP	A	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43539894	43539894	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43770582	43770582	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSTPIP2	9050	broad.mit.edu	37	18	43609177	43609177	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTDSS1	9791	broad.mit.edu	37	8	97299396	97299397	+	Intron	INS	-	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198668535	198668535	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198677294	198677294	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55718234	55718234	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41419861	41419861	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSER1	79832	broad.mit.edu	37	11	32954592	32954592	+	Silent	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51L1	5890	broad.mit.edu	37	14	68949778	68949779	+	Intron	DEL	AG	-	-	rs10570973		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG2	5897	broad.mit.edu	37	11	36614854	36614854	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM15	64783	broad.mit.edu	37	1	110882461	110882461	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H2	54542	broad.mit.edu	37	9	125620998	125620998	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79255449	79255449	+	3'UTR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103123972	103123972	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REN	5972	broad.mit.edu	37	1	204124180	204124180	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43617524	43617524	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117240356	117240356	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGAG1	57529	broad.mit.edu	37	X	109694088	109694088	+	Silent	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBG	57127	broad.mit.edu	37	1	156347250	156347250	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHD	6007	broad.mit.edu	37	1	25632871	25632871	+	Intron	SNP	G	C	C	rs138674175	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130926887	130926887	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104672372	104672372	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEL	6041	broad.mit.edu	37	1	182554508	182554508	+	Silent	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF165	494470	broad.mit.edu	37	18	44030176	44030176	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF220	55182	broad.mit.edu	37	1	44989069	44989069	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL23P8	222901	broad.mit.edu	37	7	20867064	20867064	+	RNA	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTN	126638	broad.mit.edu	37	1	152128369	152128369	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRBP1	6238	broad.mit.edu	37	20	17639837	17639837	+	Intron	SNP	C	T	T	rs113442443		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC1	51319	broad.mit.edu	37	3	158015742	158015742	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1	861	broad.mit.edu	37	21	36463208	36463208	+	Intron	DEL	C	-	-	rs10712853		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUVBL2	10856	broad.mit.edu	37	19	49510571	49510571	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237446193	237446193	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237550672	237550672	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134978251	134978251	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMSN1	64092	broad.mit.edu	37	21	15882887	15882887	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASH1	23328	broad.mit.edu	37	6	148795398	148795398	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCD5	79966	broad.mit.edu	37	4	83601843	83601843	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38743392	38743392	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38760394	38760394	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	166018882	166018882	+	Splice_Site	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38592784	38592784	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71334924	71334924	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16B	89866	broad.mit.edu	37	1	177906203	177906203	+	Intron	SNP	C	A	A	rs146318029	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13971163	13971163	+	Silent	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83636642	83636642	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT3	55964	broad.mit.edu	37	22	42388740	42388740	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT4	5414	broad.mit.edu	37	17	56598179	56598180	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERINC5	256987	broad.mit.edu	37	5	79527443	79527443	+	Intron	DEL	A	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA5	5104	broad.mit.edu	37	14	95058481	95058481	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB9	5272	broad.mit.edu	37	6	2895786	2895786	+	Intron	DEL	A	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7239690	7239690	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK223	157285	broad.mit.edu	37	8	8185691	8185691	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D4A	63898	broad.mit.edu	37	8	19251949	19251949	+	Intron	SNP	A	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3KBP1	30011	broad.mit.edu	37	X	19818018	19818018	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2A	9644	broad.mit.edu	37	10	105362155	105362155	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA9	729993	broad.mit.edu	37	16	13164001	13164001	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC15	284266	broad.mit.edu	37	18	43405779	43405779	+	Intron	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP1	8631	broad.mit.edu	37	17	46214542	46214542	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A2	6555	broad.mit.edu	37	13	103718580	103718580	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119014861	119014861	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A18	5002	broad.mit.edu	37	11	2943331	2943331	+	Splice_Site	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92949202	92949202	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103029979	103029979	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92352583	92352583	+	Intron	SNP	A	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A4	55089	broad.mit.edu	37	12	47162214	47162214	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70633732	70633732	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN5	162394	broad.mit.edu	37	17	33591957	33591957	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144905795	144905795	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11144075	11144075	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88367564	88367564	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-26	100033802	broad.mit.edu	37	15	25477644	25477644	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP27	11017	broad.mit.edu	37	2	70129937	70129937	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX17	9784	broad.mit.edu	37	2	27596077	27596077	+	Intron	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOCS6	9306	broad.mit.edu	37	18	67992072	67992072	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SON	6651	broad.mit.edu	37	21	34924840	34924840	+	Silent	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS1	10580	broad.mit.edu	37	10	97197462	97197462	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106675714	106675714	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106960809	106960809	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231363570	231363570	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA13	221178	broad.mit.edu	37	13	24853068	24853071	+	Intron	DEL	TTCC	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35641547	35641547	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPON1	10418	broad.mit.edu	37	11	14157044	14157044	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR3	6707	broad.mit.edu	37	1	152975806	152975829	+	In_Frame_Del	DEL	CCAGGCTACACCAAGGTCCCTGAA	-	-	rs72704847	byFrequency;by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR4	163778	broad.mit.edu	37	1	152944661	152944661	+	3'UTR	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158626316	158626316	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158637981	158637981	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX7	280658	broad.mit.edu	37	X	52674373	52674373	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA5	29906	broad.mit.edu	37	18	44284556	44284571	+	Frame_Shift_Del	DEL	AATATTTCGTGCCTCA	-	-	rs146980909		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52539056	52539056	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48045513	48045513	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT3H	8464	broad.mit.edu	37	6	44988218	44988218	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12187427	12187427	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN3	8224	broad.mit.edu	37	22	32914260	32914260	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAB3	257397	broad.mit.edu	37	X	30872236	30872236	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123970361	123970361	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACO1	51204	broad.mit.edu	37	17	61683704	61683704	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR1	6869	broad.mit.edu	37	2	75313849	75313849	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1	6872	broad.mit.edu	37	X	70595026	70595026	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D4	9882	broad.mit.edu	37	13	75991382	75991382	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8B	54885	broad.mit.edu	37	X	106116689	106116689	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8	11138	broad.mit.edu	37	2	101666962	101666962	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL2	26608	broad.mit.edu	37	7	72985127	72985127	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX19	9095	broad.mit.edu	37	1	168262523	168262524	+	Intron	INS	-	TGTT	TGTT	rs140890330	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79279682	79279682	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1	10915	broad.mit.edu	37	5	145887540	145887540	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF20	6942	broad.mit.edu	37	22	42575497	42575498	+	Intron	DEL	AA	-	-	rs67057709		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30700805	30700805	+	Missense_Mutation	SNP	T	G	G	rs149415841	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPI	7035	broad.mit.edu	37	2	188349011	188349011	+	Intron	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133984821	133984822	+	Intron	INS	-	TT	TT	rs1554541		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11418911	11418911	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43784882	43784883	+	Intron	DNP	CC	AA	AA			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK1	9874	broad.mit.edu	37	2	171850178	171850179	+	3'UTR	INS	-	AA	AA	rs144505944		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	130231722	130231723	+	Intron	INS	-	CTCCTTCTCCCTCCTCCCG	CTCCTTCTCCCTCCTCCCG	rs149346895	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM144	55314	broad.mit.edu	37	4	159174723	159174723	+	3'UTR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM150A	129303	broad.mit.edu	37	2	85828980	85828981	+	Intron	INS	-	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM150C	441027	broad.mit.edu	37	4	83415936	83415937	+	Intron	INS	-	T	T	rs147227674		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM154	201799	broad.mit.edu	37	4	153549745	153549745	+	Intron	DEL	C	-	-	rs72117571		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM45A	55076	broad.mit.edu	37	3	100274262	100274262	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM50B	757	broad.mit.edu	37	21	34854064	34854064	+	5'Flank	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM55B	90809	broad.mit.edu	37	14	20927364	20927364	+	Splice_Site	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC18	84629	broad.mit.edu	37	7	5359833	5359833	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC18	84629	broad.mit.edu	37	7	5359984	5359984	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175521730	175521730	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175644572	175644572	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175676060	175676060	+	Intron	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10973783	10973783	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42202060	42202061	+	Intron	DEL	TG	-	-	rs59260540		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM21	6737	broad.mit.edu	37	11	4406464	4406464	+	3'UTR	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14482690	14482690	+	Splice_Site	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230654475	230654475	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122853870	122853870	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234851353	234851353	+	Silent	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116454784	116454784	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51599512	51599512	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43212003	43212003	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7B	145567	broad.mit.edu	37	14	91252704	91252704	+	Intron	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80749390	80749390	+	Intron	SNP	G	C	C	rs3799493	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179611535	179611535	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAC2	337867	broad.mit.edu	37	13	99896102	99896102	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4B	10277	broad.mit.edu	37	1	10118731	10118732	+	Intron	INS	-	T	T	rs142864591	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103331276	103331276	+	Intron	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35954265	35954265	+	3'UTR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35542338	35542338	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210802366	210802366	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126222906	126222906	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216260027	216260027	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP15	9958	broad.mit.edu	37	12	62784975	62784975	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP25	29761	broad.mit.edu	37	21	17198712	17198713	+	Intron	INS	-	GTT	GTT			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP44	84101	broad.mit.edu	37	12	95914952	95914952	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP20	27340	broad.mit.edu	37	12	101679536	101679536	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144875803	144875803	+	Intron	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	115163698	115163698	+	IGR	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	15815109	15815109	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37626418	37626418	+	IGR	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38982168	38982168	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52667180	52667180	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	70304527	70304527	+	IGR	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	77170079	77170079	+	IGR	SNP	G	T	T	rs115003714	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	83471615	83471615	+	IGR	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	86491847	86491847	+	IGR	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	129166341	129166341	+	IGR	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130453742	130453742	+	IGR	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	133577493	133577493	+	IGR	DEL	G	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	17809551	17809551	+	IGR	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	21909626	21909626	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4263796	4263796	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48967343	48967343	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48967608	48967608	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48971772	48971772	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49013208	49013208	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49893214	49893214	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55071555	55071555	+	IGR	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55351008	55351008	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59259239	59259239	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6079037	6079037	+	IGR	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80027817	80027818	+	IGR	INS	-	AG	AG	rs142216727	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	11669341	11669341	+	IGR	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	15146973	15146973	+	IGR	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30145721	30145721	+	IGR	DEL	A	-	-	rs11312169		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	4057974	4057974	+	IGR	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61625341	61625341	+	IGR	SNP	C	A	A	rs142732872	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63396464	63396464	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	82468449	82468449	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	94914943	94914944	+	IGR	INS	-	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	97439199	97439199	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98655810	98655810	+	IGR	SNP	G	A	A	rs79023906	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	31652513	31652520	+	IGR	DEL	AAGAAAGA	-	-	rs7986217		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	46443079	46443079	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54911897	54911897	+	IGR	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	83715757	83715757	+	IGR	DEL	A	-	-	rs35293897		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20094857	20094857	+	IGR	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147623	20147623	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147949	20147949	+	IGR	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20264653	20264653	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	29735376	29735376	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	30492731	30492731	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	54204302	54204305	+	IGR	DEL	GAAA	-	-	rs71829926		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	56377895	56377896	+	IGR	INS	-	T	T	rs149104130	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59602759	59602759	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82535701	82535702	+	IGR	INS	-	TCCC	TCCC	rs28394171		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97980586	97980593	+	IGR	DEL	TTCCTTTT	-	-	rs71883285	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98921236	98921236	+	IGR	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	101094215	101094215	+	IGR	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22482661	22482663	+	IGR	DEL	AAT	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	53188861	53188861	+	IGR	SNP	C	A	A	rs145478500	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60165234	60165234	+	IGR	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	77271809	77271809	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20128859	20128859	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	22682280	22682280	+	IGR	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31173727	31173727	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31345826	31345829	+	IGR	DEL	CCTT	-	-	rs12932165		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32489474	32489474	+	IGR	DEL	C	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32611654	32611654	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33372700	33372700	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33984938	33984938	+	IGR	SNP	A	C	C	rs146941741	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48884010	48884010	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51286882	51286882	+	IGR	SNP	G	A	A	rs151333746	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55482682	55482683	+	IGR	INS	-	GAAG	GAAG	rs138737506	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79875322	79875322	+	IGR	SNP	C	T	T	rs147175879	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	82316	82316	+	IGR	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	85850017	85850017	+	IGR	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51834473	51834473	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15203218	15203218	+	IGR	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41901557	41901557	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	49837609	49837609	+	IGR	DEL	C	-	-	rs144344617		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	58506103	58506103	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	65819043	65819043	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22499263	22499263	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22790842	22790842	+	IGR	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35034357	35034357	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43844689	43844689	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51714950	51714950	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	57385317	57385320	+	IGR	DEL	TGTA	-	-	rs71947783		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	8788404	8788407	+	IGR	DEL	GTCC	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	105941206	105941206	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143488844	143488844	+	IGR	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143534418	143534418	+	IGR	DEL	A	-	-	rs2872278	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146589521	146589521	+	IGR	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	14809013	14809015	+	IGR	DEL	ATA	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148923899	148923899	+	IGR	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158494595	158494595	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159249110	159249110	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163272104	163272108	+	IGR	DEL	TAACT	-	-	rs56193415		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	181120898	181120898	+	IGR	SNP	T	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192900223	192900223	+	IGR	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	193726155	193726155	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	199357137	199357137	+	IGR	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	204682953	204682954	+	IGR	DEL	AC	-	-	rs35296946		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208494035	208494035	+	IGR	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208980993	208980993	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	213717454	213717456	+	IGR	DEL	AGA	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	236274886	236274886	+	IGR	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	239264715	239264715	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248605387	248605387	+	IGR	DEL	A	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	50758936	50758936	+	IGR	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	51544957	51544958	+	IGR	INS	-	ACA	ACA	rs140537127	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	25742736	25742736	+	IGR	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29456793	29456793	+	IGR	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29582943	29582943	+	IGR	SNP	C	T	T	rs113661450		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29605191	29605191	+	IGR	SNP	G	C	C	rs143937497	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38859538	38859538	+	IGR	SNP	A	G	G	rs62212772		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10140915	10140915	+	IGR	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14900115	14900115	+	IGR	SNP	T	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	23808806	23808807	+	IGR	DNP	CC	AA	AA			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	40242221	40242222	+	IGR	INS	-	TG	TG	rs138433731	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9418564	9418564	+	IGR	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9852825	9852825	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16868466	16868466	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16909977	16909981	+	IGR	DEL	CAAAA	-	-	rs111736616		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34986707	34986707	+	IGR	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	122993840	122993840	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146301485	146301485	+	IGR	SNP	C	T	T	rs142896864	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	151297211	151297211	+	IGR	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17465829	17465829	+	IGR	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17465923	17465923	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	200463951	200463955	+	IGR	DEL	ATTAA	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	211739932	211739932	+	IGR	SNP	A	G	G	rs114184637	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	234713306	234713306	+	IGR	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	33862231	33862231	+	IGR	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	53111655	53111655	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	68015347	68015347	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800531	91800531	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96241248	96241248	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	113822199	113822199	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	139606045	139606046	+	IGR	INS	-	GC	GC			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	142905076	142905076	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	182393538	182393538	+	IGR	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36809870	36809870	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76748573	76748573	+	IGR	DEL	T	-	-	rs145387231		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	15154167	15154167	+	IGR	DEL	T	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	158865042	158865042	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17335863	17335863	+	IGR	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190191490	190191490	+	IGR	DEL	G	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190542818	190542818	+	IGR	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190574318	190574318	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190588085	190588085	+	IGR	SNP	C	G	G	rs79344145		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190588705	190588716	+	IGR	DEL	GTGTGTGTGTAG	-	-	rs72438449		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190604736	190604736	+	IGR	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190634056	190634056	+	IGR	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190648225	190648225	+	IGR	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190662034	190662034	+	IGR	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190925765	190925765	+	IGR	SNP	T	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	40113	40113	+	IGR	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43589666	43589666	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49323446	49323446	+	IGR	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49516698	49516698	+	IGR	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70257302	70257302	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105058482	105058482	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105751606	105751606	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107061513	107061513	+	IGR	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	108924569	108924569	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130301769	130301769	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154510460	154510462	+	IGR	DEL	TCT	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154872787	154872787	+	IGR	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	166128095	166128095	+	IGR	SNP	A	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	177522491	177522491	+	IGR	SNP	A	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40597897	40597897	+	IGR	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	6958708	6958708	+	IGR	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	143663809	143663809	+	IGR	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	56296951	56296951	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57929029	57929032	+	IGR	DEL	AAAT	-	-	rs139620314		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	71760732	71760732	+	IGR	SNP	A	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	88986020	88986020	+	IGR	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	110055900	110055900	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124335803	124335804	+	IGR	INS	-	GAGAA	GAGAA	rs28707456	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136398991	136398991	+	IGR	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141650378	141650378	+	IGR	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	155862152	155862152	+	IGR	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	156426489	156426489	+	IGR	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	18066337	18066337	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55654681	55654681	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63126629	63126629	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	97004281	97004281	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	97004294	97004294	+	IGR	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132529954	132529954	+	IGR	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	29677809	29677815	+	IGR	DEL	ACCACAC	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47010640	47010640	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47342041	47342041	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7996081	7996081	+	IGR	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	107267590	107267590	+	IGR	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109889711	109889711	+	IGR	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	118694227	118694227	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	14922253	14922253	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	21178843	21178843	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43163318	43163318	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68403603	68403603	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68491533	68491534	+	IGR	DEL	TC	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	91345969	91345969	+	IGR	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100418000	100418000	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	101439975	101439975	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106793381	106793381	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	123353660	123353660	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	16217144	16217144	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	34735500	34735500	+	IGR	DEL	G	-	-	rs35822719		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	49431285	49431285	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52818559	52818559	+	IGR	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63264258	63264258	+	IGR	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64470159	64470159	+	IGR	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	67820115	67820115	+	IGR	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68094528	68094528	+	IGR	SNP	G	T	T	rs143786749	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74963301	74963301	+	IGR	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78340715	78340715	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	80845606	80845606	+	IGR	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92542729	92542729	+	IGR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13485652	13485652	+	IGR	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59006128	59006128	+	IGR	SNP	A	T	T	rs78912113		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9951904	9951904	+	IGR	DEL	A	-	-	rs112684711		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82779263	82779263	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPR2	7434	broad.mit.edu	37	7	158896409	158896409	+	Intron	SNP	A	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS39	23339	broad.mit.edu	37	15	42454305	42454305	+	Silent	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSX1	30813	broad.mit.edu	37	20	25059479	25059479	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTN	7448	broad.mit.edu	37	17	26697216	26697216	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF1	8936	broad.mit.edu	37	6	110421772	110421772	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF3	10810	broad.mit.edu	37	13	27239724	27239725	+	Intron	INS	-	A	A	rs150309212	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASH2P	375260	broad.mit.edu	37	2	114345005	114345005	+	Intron	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR27	253769	broad.mit.edu	37	6	170070699	170070699	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR41	55255	broad.mit.edu	37	5	76776240	76776240	+	Intron	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR53	348793	broad.mit.edu	37	3	196288135	196288135	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIZ	58525	broad.mit.edu	37	19	15538418	15538418	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT8A	7478	broad.mit.edu	37	5	137423338	137423339	+	Intron	INS	-	AA	AA	rs66902804		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRN	7486	broad.mit.edu	37	8	30954383	30954383	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78459050	78459050	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	167759885	167759885	+	5'Flank	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPR1	9213	broad.mit.edu	37	1	180775252	180775252	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YWHAG	7532	broad.mit.edu	37	7	75959117	75959117	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YWHAG	7532	broad.mit.edu	37	7	75991303	75991303	+	5'Flank	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB7C	201501	broad.mit.edu	37	18	45566337	45566337	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207169707	207169707	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC15	158866	broad.mit.edu	37	X	74641834	74641834	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77690624	77690624	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147131357	147131357	+	3'UTR	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM3	9203	broad.mit.edu	37	X	70465445	70465445	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF167	55888	broad.mit.edu	37	3	44619311	44619311	+	Intron	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF234	10780	broad.mit.edu	37	19	44652983	44652983	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22270766	22270766	+	Intron	SNP	T	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF268	10795	broad.mit.edu	37	12	133758615	133758615	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF292	23036	broad.mit.edu	37	6	87914900	87914900	+	Intron	SNP	C	T	T	rs116689979	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF292	23036	broad.mit.edu	37	6	87925825	87925848	+	Intron	DEL	AGACACACACACACACACACACAC	-	-	rs71960404		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64395882	64395882	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF44	51710	broad.mit.edu	37	19	12386639	12386639	+	Intron	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF502	91392	broad.mit.edu	37	3	44752247	44752247	+	5'Flank	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF507	22847	broad.mit.edu	37	19	32845048	32845048	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF569	148266	broad.mit.edu	37	19	37917123	37917123	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF587	84914	broad.mit.edu	37	19	58322236	58322236	+	Intron	SNP	C	T	T	rs78368959		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF587	84914	broad.mit.edu	37	19	58337760	58337760	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF592	9640	broad.mit.edu	37	15	85326375	85326375	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	65591	65591	+	Intron	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF681	148213	broad.mit.edu	37	19	23938224	23938224	+	Intron	SNP	C	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF776	284309	broad.mit.edu	37	19	58265121	58265121	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185803625	185803625	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF835	90485	broad.mit.edu	37	19	57175665	57175665	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048570	238048570	+	Silent	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	102182935	102182935	+	Intron	SNP	A	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	51816491	51816491	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	97728899	97728899	+	Intron	DEL	C	-	-			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	52478707	52478707	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	65276613	65276613	+	5'Flank	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102315191	102315191	+	RNA	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29286400	29286400	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143463794	143463794	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143965415	143965415	+	Intron	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	565370	565370	+	5'Flank	SNP	G	A	A	rs150290022	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	68428402	68428403	+	Intron	INS	-	T	T	rs148408827	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27703820	27703820	+	5'Flank	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	65975263	65975263	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	8003410	8003410	+	Intron	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14661621	14661621	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	170900042	170900042	+	5'Flank	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	17849252	17849252	+	Intron	SNP	C	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	18622062	18622062	+	Intron	SNP	T	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100551592	100551592	+	RNA	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142104545	142104545	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142120409	142120409	+	Intron	SNP	G	T	T			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142120459	142120459	+	Intron	SNP	G	T	T	rs138311632	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38284885	38284886	+	Intron	INS	-	GGGT	GGGT	rs138091320	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	51458794	51458794	+	5'Flank	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12427623	12427623	+	Intron	SNP	T	C	C	rs77644952		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12446334	12446334	+	Intron	SNP	G	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12446342	12446342	+	Intron	SNP	T	G	G			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66457773	66457773	+	5'Flank	SNP	G	T	T	rs146714440	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68414373	68414373	+	RNA	SNP	C	T	T	rs71267791		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	10093	10093	+	5'Flank	SNP	T	C	C			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	3670	3670	+	RNA	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	3707	3707	+	RNA	SNP	G	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
