Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCB1	5243	broad.mit.edu	37	7	87195567	87195567	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20666292	20666292	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG2	9429	broad.mit.edu	37	4	89042715	89042715	+	Intron	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35687289	35687289	+	Silent	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAP1	9744	broad.mit.edu	37	17	7249688	7249688	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACLY	47	broad.mit.edu	37	17	40034439	40034439	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM1	116285	broad.mit.edu	37	16	20693868	20693868	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236898981	236898981	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR2B	93	broad.mit.edu	37	3	38518702	38518702	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106067320	106067320	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107198854	107198854	+	Intron	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178771087	178771087	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS7	11173	broad.mit.edu	37	15	79051803	79051803	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK1	57143	broad.mit.edu	37	14	78365798	78365798	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7626381	7626381	+	Silent	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7766703	7766703	+	Intron	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD3	120	broad.mit.edu	37	10	111892043	111892043	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AES	166	broad.mit.edu	37	19	3061240	3061240	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105406157	105406157	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77752792	77752792	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1L1	10840	broad.mit.edu	37	3	125824829	125824829	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH5	54890	broad.mit.edu	37	17	18098417	18098417	+	Intron	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29498224	29498224	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX12	239	broad.mit.edu	37	17	6913618	6913618	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38471612	38471612	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114274542	114274542	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKAR	150709	broad.mit.edu	37	2	190557960	190557960	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFY1	51479	broad.mit.edu	37	17	4120342	4120342	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD36B	57730	broad.mit.edu	37	2	98177030	98177030	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD55	79722	broad.mit.edu	37	5	55466377	55466377	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5708897	5708897	+	Intron	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101460686	101460686	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA2	321	broad.mit.edu	37	15	29390776	29390776	+	Silent	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOA4	337	broad.mit.edu	37	11	116691952	116691952	+	Silent	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21263872	21263872	+	Silent	SNP	A	C	C	rs150182638		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33385916	33385916	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33386084	33386084	+	Silent	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33386201	33386201	+	Intron	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP33	115703	broad.mit.edu	37	19	36270988	36270988	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AR	367	broad.mit.edu	37	X	66937656	66937656	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB11	140456	broad.mit.edu	37	X	15306300	15306300	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176852242	176852242	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119977080	119977080	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31250636	31250636	+	Splice_Site	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD3C	219293	broad.mit.edu	37	1	1387819	1387819	+	Intron	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108178567	108178567	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B3	492	broad.mit.edu	37	X	152806797	152806797	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203678661	203678661	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142204090	142204090	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZI2	64343	broad.mit.edu	37	3	28368430	28368430	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11049511	11049511	+	3'UTR	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69943498	69943498	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BASP1	10409	broad.mit.edu	37	5	17275182	17275182	+	Intron	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2L11	10018	broad.mit.edu	37	2	111921924	111921924	+	3'UTR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL8	606	broad.mit.edu	37	15	20874864	20874864	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136597524	136597524	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND6	221336	broad.mit.edu	37	6	56869441	56869441	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMX	660	broad.mit.edu	37	X	15543557	15543557	+	Intron	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf33	84935	broad.mit.edu	37	13	31498737	31498737	+	3'UTR	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf33	196951	broad.mit.edu	37	15	49657621	49657621	+	Intron	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf55	256646	broad.mit.edu	37	15	34640188	34640188	+	Missense_Mutation	SNP	C	A	A	rs138920290	by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf177	163747	broad.mit.edu	37	1	55277510	55277510	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf54	79630	broad.mit.edu	37	1	150245265	150245265	+	Silent	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf195	79025	broad.mit.edu	37	20	62187642	62187642	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	46122595	46122595	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf81	391267	broad.mit.edu	37	21	15343609	15343609	+	Intron	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26676332	26676332	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf43	55319	broad.mit.edu	37	4	164438493	164438494	+	Intron	DNP	GG	TA	TA			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37183248	37183248	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41149895	41149895	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165711608	165711608	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf201	404220	broad.mit.edu	37	6	4087866	4087866	+	5'UTR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120782291	120782291	+	Intron	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAB39	51719	broad.mit.edu	37	2	231658035	231658035	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54596841	54596841	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18825107	18825107	+	Silent	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44286856	44286856	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN1	4076	broad.mit.edu	37	11	34118329	34118329	+	Intron	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2954996	2954996	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCAR1	55749	broad.mit.edu	37	10	70506934	70506935	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC144A	9720	broad.mit.edu	37	17	16649707	16649707	+	Intron	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106121900	106121900	+	Silent	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC148	130940	broad.mit.edu	37	2	159170495	159170495	+	Intron	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC34	91057	broad.mit.edu	37	11	27384257	27384257	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14A	8556	broad.mit.edu	37	1	100859098	100859098	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14C	168448	broad.mit.edu	37	7	48965384	48965384	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA7	83879	broad.mit.edu	37	2	174232113	174232113	+	Intron	DEL	G	-	-			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21882692	21882692	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44839281	44839281	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31267788	31267788	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26886006	26886006	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL4	344387	broad.mit.edu	37	2	39406328	39406328	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	18018822	18018822	+	Intron	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	18022493	18022493	+	Silent	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48689361	48689361	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP120	153241	broad.mit.edu	37	5	122751835	122751835	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFB	629	broad.mit.edu	37	6	31916807	31916807	+	Intron	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR5	81494	broad.mit.edu	37	1	196965399	196965399	+	Intron	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50824221	50824221	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRDL1	91851	broad.mit.edu	37	X	110006084	110006084	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120213792	120213792	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKMT1A	548596	broad.mit.edu	37	15	43990846	43990846	+	Missense_Mutation	SNP	G	A	A	rs142460452		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86898328	86898328	+	Intron	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN4	1183	broad.mit.edu	37	X	10181882	10181882	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPTM1	1209	broad.mit.edu	37	19	45489713	45489713	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSPN	63967	broad.mit.edu	37	1	36204707	36204707	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMTM5	116173	broad.mit.edu	37	14	23847491	23847491	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103400526	103400526	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103444120	103444120	+	Intron	SNP	A	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86375841	86375841	+	Intron	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO1C	23603	broad.mit.edu	37	12	109041101	109041101	+	3'UTR	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA5	93979	broad.mit.edu	37	7	130001127	130001127	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1C	126129	broad.mit.edu	37	19	50210786	50210786	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197404574	197404574	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB5	9586	broad.mit.edu	37	7	28858964	28858964	+	3'UTR	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2855829	2855830	+	Intron	DNP	GG	TT	TT			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34128334	34128334	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113516138	113516138	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114389230	114389230	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTBP2	1488	broad.mit.edu	37	10	126681258	126681258	+	Intron	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND1	1500	broad.mit.edu	37	11	57575697	57575697	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49046761	49046761	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR7	57007	broad.mit.edu	37	2	237490163	237490163	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	22928529	22928530	+	Intron	INS	-	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A43	64816	broad.mit.edu	37	7	99436638	99436638	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBT	1629	broad.mit.edu	37	1	100672088	100672088	+	Silent	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC2B	149069	broad.mit.edu	37	1	32677383	32677383	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36759392	36759392	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162745783	162745783	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX50	79009	broad.mit.edu	37	10	70700792	70700792	+	Intron	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2C	163259	broad.mit.edu	37	1	115166223	115166223	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC1	55635	broad.mit.edu	37	1	68947177	68947177	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRSX	207063	broad.mit.edu	37	X	2161034	2161035	+	Intron	DEL	CC	-	-			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX38	9785	broad.mit.edu	37	16	72137651	72137651	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRAS2	54769	broad.mit.edu	37	9	93375674	93375674	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISP1	84976	broad.mit.edu	37	1	223165064	223165064	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83170840	83170840	+	3'UTR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMGDH	29958	broad.mit.edu	37	5	78359439	78359439	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124341758	124341758	+	Silent	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20996463	20996463	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169143299	169143299	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169502911	169502911	+	Intron	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	432259	432259	+	Silent	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37649267	37649267	+	Intron	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	115200315	115200315	+	5'UTR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162862235	162862235	+	Intron	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162902089	162902089	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28916419	28916419	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28980983	28980983	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2LI1	51626	broad.mit.edu	37	2	44010827	44010827	+	Intron	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK1B	9149	broad.mit.edu	37	19	40316843	40316843	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71755423	71755423	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108355453	108355453	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDARADD	128178	broad.mit.edu	37	1	236645850	236645850	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF2K	29904	broad.mit.edu	37	16	22269910	22269910	+	Silent	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB1	79645	broad.mit.edu	37	8	49637302	49637302	+	Silent	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGLN3	112399	broad.mit.edu	37	14	34398210	34398210	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4E2	9470	broad.mit.edu	37	2	233421190	233421190	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38186529	38186530	+	Intron	INS	-	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66361398	66361398	+	Intron	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66439653	66439653	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134851646	134851647	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56274428	56274428	+	Silent	SNP	C	T	T	rs150544366	byFrequency	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC2	2068	broad.mit.edu	37	19	45867504	45867504	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPNP	284729	broad.mit.edu	37	1	17030482	17030482	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVPLL	645027	broad.mit.edu	37	17	18284916	18284916	+	Splice_Site	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107A	11170	broad.mit.edu	37	3	58555535	58555535	+	Missense_Mutation	SNP	C	T	T	rs11539089		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM119A	151194	broad.mit.edu	37	2	208489080	208489080	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120B	84498	broad.mit.edu	37	6	170627007	170627007	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM160B1	57700	broad.mit.edu	37	10	116595168	116595168	+	Intron	SNP	C	T	T	rs142343792	by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169A	26049	broad.mit.edu	37	5	74095669	74095669	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62104158	62104158	+	3'UTR	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62148863	62148863	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM35A	54537	broad.mit.edu	37	10	88939887	88939887	+	Silent	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10672704	10672704	+	Silent	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM46C	54855	broad.mit.edu	37	1	118166707	118166707	+	3'UTR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190130042	190130042	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65C	140876	broad.mit.edu	37	20	49218697	49218697	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54805296	54805296	+	Silent	SNP	G	T	T	rs149380682		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89865685	89865685	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCI	55215	broad.mit.edu	37	15	89858441	89858441	+	Intron	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187531125	187531125	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126328353	126328353	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8206690	8206690	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR1A	2209	broad.mit.edu	37	1	149754121	149754121	+	5'Flank	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125022813	125022813	+	Intron	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERD3L	222894	broad.mit.edu	37	7	19185001	19185001	+	Translation_Start_Site	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGA	2243	broad.mit.edu	37	4	155507348	155507348	+	Silent	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128489100	128489100	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216230044	216230044	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNBP1L	54874	broad.mit.edu	37	1	93998519	93998519	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159653930	159653930	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89409458	89409458	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXA1	3169	broad.mit.edu	37	14	38061776	38061776	+	Silent	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37732384	37732384	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48537632	48537633	+	Intron	DEL	AT	-	-	rs78674320	by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17445725	17445725	+	Silent	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAGE2A	729447	broad.mit.edu	37	X	49208295	49208296	+	Intron	INS	-	TAT	TAT			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173150846	173150846	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN4	50628	broad.mit.edu	37	17	651064	651064	+	Silent	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFI1B	8328	broad.mit.edu	37	9	135863743	135863743	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA2	2742	broad.mit.edu	37	X	14748434	14748434	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D1	79709	broad.mit.edu	37	19	17671210	17671210	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAZ	2781	broad.mit.edu	37	22	23438214	23438214	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPKOW	27238	broad.mit.edu	37	X	48979004	48979005	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR111	222611	broad.mit.edu	37	6	47645713	47645713	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR114	221188	broad.mit.edu	37	16	57597789	57597789	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR15	2838	broad.mit.edu	37	3	98251773	98251773	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR32	2854	broad.mit.edu	37	19	51274220	51274220	+	Silent	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR34	2857	broad.mit.edu	37	X	41555023	41555023	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR34	2857	broad.mit.edu	37	X	41555104	41555131	+	Frame_Shift_Del	DEL	TAATCGCCCTCTATGTATTTCTGGGTAT	-	-			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR56	9289	broad.mit.edu	37	16	57697431	57697431	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94343889	94343889	+	Intron	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13715638	13715638	+	3'UTR	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34008347	34008347	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88323694	88323694	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM6	2916	broad.mit.edu	37	5	178414064	178414064	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27476787	27476787	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27561364	27561365	+	5'Flank	DNP	TC	AA	AA			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC11	79885	broad.mit.edu	37	3	13546159	13546159	+	Silent	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC1	3065	broad.mit.edu	37	1	32792491	32792491	+	Intron	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELB	92797	broad.mit.edu	37	12	66698690	66698690	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFE2	148738	broad.mit.edu	37	1	145416843	145416843	+	Silent	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222716696	222716696	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AG	8969	broad.mit.edu	37	6	27100668	27100668	+	5'Flank	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76476421	76476421	+	3'UTR	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22208080	22208080	+	Intron	DEL	G	-	-			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53652847	53652852	+	Intron	DEL	GCCGGT	-	-	rs11091285	by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71127621	71127621	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71220865	71220865	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23383342	23383342	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23385654	23385654	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2	3481	broad.mit.edu	37	11	2156601	2156601	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP4	3487	broad.mit.edu	37	17	38609369	38609369	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFN1	91156	broad.mit.edu	37	1	201190883	201190883	+	Intron	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111689661	111689661	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1R2	7850	broad.mit.edu	37	2	102625953	102625953	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	103891987	103891987	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RN	3557	broad.mit.edu	37	2	113890416	113890416	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL3RA	3563	broad.mit.edu	37	X	1471176	1471176	+	Intron	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPACT	55364	broad.mit.edu	37	18	22008782	22008782	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING5	84289	broad.mit.edu	37	2	242651391	242651391	+	Splice_Site	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5D	3635	broad.mit.edu	37	2	233925269	233925269	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156815041	156815041	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15634141	15634141	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7755153	7755153	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7755155	7755155	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7611659	7611659	+	Silent	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4774722	4774722	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JKAMP	51528	broad.mit.edu	37	14	59965536	59965536	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAAG1	353219	broad.mit.edu	37	6	24358006	24358006	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAL1	3730	broad.mit.edu	37	X	8553266	8553266	+	Intron	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123987728	123987728	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124397099	124397099	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB1	3745	broad.mit.edu	37	20	47991417	47991418	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211034006	211034006	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH2	3757	broad.mit.edu	37	7	150648009	150648009	+	Silent	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63417001	63417001	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36691048	36691048	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHNYN	23351	broad.mit.edu	37	14	24901122	24901122	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0125	9834	broad.mit.edu	37	14	106369547	106369547	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0754	643314	broad.mit.edu	37	1	39876290	39876290	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57164495	57164495	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95543256	95543256	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF14	9928	broad.mit.edu	37	1	200584453	200584453	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10355184	10355185	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154396718	154396718	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRC1	3821	broad.mit.edu	37	12	10603002	10603002	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRG2	346689	broad.mit.edu	37	7	139164445	139164445	+	Silent	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	T	T	rs121913529		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT80	144501	broad.mit.edu	37	12	52565917	52565917	+	Intron	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT9	3857	broad.mit.edu	37	17	39723454	39723454	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR1	8844	broad.mit.edu	37	17	25919482	25919482	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209807600	209807600	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAX1	54900	broad.mit.edu	37	1	203741361	203741361	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE1E	353135	broad.mit.edu	37	1	152760201	152760201	+	3'UTR	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169684972	169684972	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48653192	48653192	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54756860	54756860	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMK2	3985	broad.mit.edu	37	22	31644745	31644745	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN28A	79727	broad.mit.edu	37	1	26751741	26751741	+	Intron	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1B	4010	broad.mit.edu	37	9	129455736	129455736	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100128542	100128542	broad.mit.edu	37	7	150444407	150444407	+	5'Flank	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285074	285074	broad.mit.edu	37	2	87276736	87276736	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285501	285501	broad.mit.edu	37	4	178882073	178882073	+	Intron	DEL	C	-	-			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442308	442308	broad.mit.edu	37	7	55713239	55713239	+	5'Flank	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645323	645323	broad.mit.edu	37	5	87962639	87962639	+	3'UTR	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78207545	78207545	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647946	647946	broad.mit.edu	37	18	36915032	36915032	+	Intron	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22661133	22661133	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23263607	23263607	+	RNA	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23264760	23264760	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23265034	23265034	+	RNA	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161071259	161071259	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG3	121227	broad.mit.edu	37	12	59277358	59277358	+	Silent	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT2	340745	broad.mit.edu	37	10	85982019	85982019	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141665729	141665729	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170063141	170063141	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170063148	170063148	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC36	55282	broad.mit.edu	37	16	67401389	67401389	+	Intron	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70482257	70482257	+	Intron	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRCC1	85444	broad.mit.edu	37	8	86043979	86043979	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160789137	160789137	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB6	158809	broad.mit.edu	37	X	26212996	26212996	+	Silent	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED2	10916	broad.mit.edu	37	X	54840152	54840152	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED2	10916	broad.mit.edu	37	X	54840154	54840154	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K15	389840	broad.mit.edu	37	X	19392585	19392585	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D2	256714	broad.mit.edu	37	X	20082923	20082923	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPRE1	22919	broad.mit.edu	37	20	31427528	31427528	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN4	8785	broad.mit.edu	37	20	43933171	43933171	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAX	4149	broad.mit.edu	37	14	65544178	65544178	+	Intron	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM6	4175	broad.mit.edu	37	2	136603920	136603920	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METRNL	284207	broad.mit.edu	37	17	81042956	81042956	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP3L	9848	broad.mit.edu	37	4	170913311	170913311	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141747582	141747582	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5	4249	broad.mit.edu	37	2	135011889	135011889	+	5'UTR	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR184	406960	broad.mit.edu	37	15	79502162	79502162	+	RNA	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89054067	89054067	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPEG1	219972	broad.mit.edu	37	11	58979598	58979598	+	Silent	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRF	116535	broad.mit.edu	37	11	68777385	68777385	+	Translation_Start_Site	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A12	54860	broad.mit.edu	37	11	60269373	60269373	+	Intron	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1A	4489	broad.mit.edu	37	16	56670402	56670402	+	5'Flank	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237026969	237026969	+	Intron	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC4	4585	broad.mit.edu	37	3	195516064	195516064	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1267038	1267038	+	Silent	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3242840	3242840	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23868310	23868310	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36714238	36714238	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76599714	76599714	+	Intron	SNP	A	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128331592	128331592	+	Silent	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95072657	95072658	+	Intron	INS	-	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2071615	2071616	+	Intron	DEL	CA	-	-			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAAA	27163	broad.mit.edu	37	4	76851457	76851457	+	Intron	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144825611	144825611	+	Intron	SNP	C	G	G	rs146822890	by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG2	54892	broad.mit.edu	37	7	158443760	158443760	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5L	57701	broad.mit.edu	37	12	50186578	50186578	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST2	8509	broad.mit.edu	37	10	75563160	75563160	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152512312	152512312	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152539283	152539283	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK2	4751	broad.mit.edu	37	1	211843896	211843896	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70526020	70526020	+	Intron	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63768436	63768436	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5415694	5415694	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247588134	247588134	+	Missense_Mutation	SNP	C	G	G	rs104895398	byFrequency	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55452714	55452714	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NNT	23530	broad.mit.edu	37	5	43700482	43700482	+	Intron	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOM1	64434	broad.mit.edu	37	7	156756633	156756633	+	Missense_Mutation	SNP	A	G	G	rs114916388	byFrequency;by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34243788	34243788	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPFFR2	10886	broad.mit.edu	37	4	73013616	73013616	+	3'UTR	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105197057	105197057	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRN1	51299	broad.mit.edu	37	6	5999207	5999207	+	3'UTR	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156845459	156845459	+	Splice_Site	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUCKS1	64710	broad.mit.edu	37	1	205687366	205687366	+	3'UTR	DEL	T	-	-			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP133	55746	broad.mit.edu	37	1	229611358	229611358	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBP2B	29989	broad.mit.edu	37	9	136081894	136081894	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228433466	228433466	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSL1	23363	broad.mit.edu	37	2	220422840	220422840	+	Intron	SNP	A	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50953850	50953850	+	Silent	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161970075	161970075	+	Silent	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52R1	119695	broad.mit.edu	37	11	4824914	4824914	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B2	390190	broad.mit.edu	37	11	58190779	58190779	+	5'Flank	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7E5P	219445	broad.mit.edu	37	11	55747457	55747457	+	5'UTR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP1	133060	broad.mit.edu	37	4	4228436	4228436	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXR1	55074	broad.mit.edu	37	8	107709650	107709650	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA3	283208	broad.mit.edu	37	11	74000151	74000151	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1P2	728773	broad.mit.edu	37	2	147346429	147346429	+	3'UTR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI4	23569	broad.mit.edu	37	1	17634806	17634806	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAMR1	25891	broad.mit.edu	37	11	35547170	35547170	+	5'UTR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140216005	140216005	+	Silent	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140589765	140589765	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB5	26167	broad.mit.edu	37	5	140516399	140516399	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB9	56127	broad.mit.edu	37	5	140568343	140568343	+	Silent	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140724231	140724231	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA6	56109	broad.mit.edu	37	5	140756102	140756102	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE2	26577	broad.mit.edu	37	3	142539657	142539657	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20704816	20704816	+	Intron	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15082476	15082476	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD7	79955	broad.mit.edu	37	10	102789810	102789811	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73453569	73453569	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PENK	5179	broad.mit.edu	37	8	57358315	57358315	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PES1	23481	broad.mit.edu	37	22	30976163	30976163	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PET112L	5188	broad.mit.edu	37	4	152626296	152626297	+	Intron	INS	-	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230468405	230468405	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGPEP1L	145814	broad.mit.edu	37	15	99511696	99511696	+	3'UTR	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHTF1	10745	broad.mit.edu	37	1	114267487	114267487	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106509746	106509746	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106521446	106521446	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2A	5305	broad.mit.edu	37	10	22898559	22898559	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNA	5306	broad.mit.edu	37	17	1438691	1438691	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL2	55124	broad.mit.edu	37	8	22140496	22140496	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL3	440822	broad.mit.edu	37	22	25156012	25156012	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81222569	81222569	+	Missense_Mutation	SNP	G	T	T	rs28534622		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110456199	110456199	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110473980	110473980	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125281475	125281475	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA1A	51365	broad.mit.edu	37	3	119336746	119336746	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD1	5337	broad.mit.edu	37	3	171330266	171330266	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLSCR5	389158	broad.mit.edu	37	3	146309466	146309466	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24755699	24755699	+	Intron	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76808028	76808028	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF12	390999	broad.mit.edu	37	1	12835550	12835550	+	Intron	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREB	10113	broad.mit.edu	37	2	27356508	27356508	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE2	166336	broad.mit.edu	37	3	64160315	64160315	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE2	166336	broad.mit.edu	37	3	64160317	64160317	+	Intron	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE2	166336	broad.mit.edu	37	3	64160780	64160780	+	Intron	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAR1A	5573	broad.mit.edu	37	17	66526261	66526261	+	Intron	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCH	5583	broad.mit.edu	37	14	61857846	61857846	+	Intron	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRIP1	79706	broad.mit.edu	37	7	102065387	102065387	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRX2	51450	broad.mit.edu	37	9	132482836	132482836	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS53	339105	broad.mit.edu	37	16	31106861	31106861	+	5'Flank	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSKH2	85481	broad.mit.edu	37	8	87076698	87076698	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGES2	80142	broad.mit.edu	37	9	130884626	130884626	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH1R	5745	broad.mit.edu	37	3	46935371	46935371	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2B	2185	broad.mit.edu	37	8	27296831	27296831	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87691257	87691257	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70949592	70949592	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PURG	29942	broad.mit.edu	37	8	30889476	30889476	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52387683	52387683	+	Silent	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP2	22841	broad.mit.edu	37	10	119805526	119805526	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB22A	57403	broad.mit.edu	37	20	56886045	56886045	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD50	10111	broad.mit.edu	37	5	131911645	131911645	+	Intron	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RADIL	55698	broad.mit.edu	37	7	4917468	4917468	+	Silent	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79338971	79338971	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM28	55131	broad.mit.edu	37	7	127977073	127977073	+	Intron	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS16	6004	broad.mit.edu	37	1	182569327	182569327	+	3'UTR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS17	26575	broad.mit.edu	37	6	153345676	153345676	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS18	64407	broad.mit.edu	37	1	192127796	192127796	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOBTB1	9886	broad.mit.edu	37	10	62648417	62648417	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30329087	30329087	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF2	6045	broad.mit.edu	37	1	185060664	185060664	+	Intron	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF5P1	286140	broad.mit.edu	37	8	38458536	38458536	+	Silent	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10467776	10467776	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10469612	10469612	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH1	89765	broad.mit.edu	37	21	43896062	43896062	+	Silent	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67843821	67843822	+	Intron	DEL	CA	-	-			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38949747	38949747	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237551398	237551398	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237969450	237969450	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARS2	54938	broad.mit.edu	37	19	39439344	39439344	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATL1	340562	broad.mit.edu	37	X	84363285	84363285	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBDS	51119	broad.mit.edu	37	7	66456124	66456124	+	Silent	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCMH1	22955	broad.mit.edu	37	1	41536410	41536411	+	Intron	INS	-	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38904605	38904605	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62041867	62041867	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38595865	38595866	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9054396	9054396	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122680072	122680072	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101049254	101049254	+	Intron	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFI1	9814	broad.mit.edu	37	22	31979927	31979927	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGPP2	130367	broad.mit.edu	37	2	223317599	223317599	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP5L	80851	broad.mit.edu	37	1	249110993	249110993	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GLB1	51100	broad.mit.edu	37	1	87185402	87185402	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70505983	70505983	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPRH	257218	broad.mit.edu	37	6	146234621	146234621	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHQ1	55164	broad.mit.edu	37	3	72799282	72799282	+	3'UTR	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52000281	52000281	+	Intron	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGMAR1	10280	broad.mit.edu	37	9	34635808	34635808	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIN3A	25942	broad.mit.edu	37	15	75706514	75706514	+	Intron	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPD	128646	broad.mit.edu	37	20	1538424	1538424	+	5'Flank	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164730786	164730786	+	Silent	SNP	C	G	G	rs75253993	byFrequency;by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92406445	92406445	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A5	92745	broad.mit.edu	37	X	48318013	48318013	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A6	145389	broad.mit.edu	37	14	61503886	61503886	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21392247	21392247	+	3'UTR	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCD1	6602	broad.mit.edu	37	12	50492660	50492660	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG5	23381	broad.mit.edu	37	1	156237397	156237397	+	Silent	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25220671	25220671	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX29	92017	broad.mit.edu	37	16	12662399	12662399	+	Silent	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231050917	231050917	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE3	441272	broad.mit.edu	37	7	99917154	99917154	+	Intron	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIRE1	56907	broad.mit.edu	37	18	12450838	12450838	+	Intron	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPON1	10418	broad.mit.edu	37	11	14156818	14156818	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPON1	10418	broad.mit.edu	37	11	14282069	14282069	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55648527	55648527	+	5'Flank	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41078156	41078156	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM2	10254	broad.mit.edu	37	2	152980221	152980221	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK25	10494	broad.mit.edu	37	2	242437747	242437747	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23826248	23826248	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP2	6813	broad.mit.edu	37	19	7705739	7705739	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113275213	113275213	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152683397	152683397	+	Missense_Mutation	SNP	C	G	G	rs116758271	byFrequency;by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64428310	64428310	+	Silent	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ2	8871	broad.mit.edu	37	6	158504309	158504309	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT12	91683	broad.mit.edu	37	11	66807603	66807603	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC1	6863	broad.mit.edu	37	7	97363555	97363555	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1B	9014	broad.mit.edu	37	2	9994427	9994427	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D23	55773	broad.mit.edu	37	3	100025155	100025155	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL1X	6907	broad.mit.edu	37	X	9661033	9661033	+	Intron	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL1X	6907	broad.mit.edu	37	X	9677597	9677597	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85448069	85448069	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDO2	6999	broad.mit.edu	37	4	156828908	156828908	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179565061	179565061	+	Intron	SNP	A	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20848270	20848270	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30700236	30700236	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM4	7047	broad.mit.edu	37	3	44929222	44929222	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGOLN2	10618	broad.mit.edu	37	2	85553611	85553611	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32497056	32497056	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMM50	92609	broad.mit.edu	37	19	39973716	39973716	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153541038	153541038	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR7	51284	broad.mit.edu	37	X	12904932	12904932	+	Silent	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM6SF1	53346	broad.mit.edu	37	15	83784772	83784772	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM6SF2	53345	broad.mit.edu	37	19	19381871	19381871	+	Silent	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2592817	2592817	+	Intron	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44403633	44403633	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM130	222865	broad.mit.edu	37	7	98452829	98452829	+	Intron	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19756129	19756129	+	Intron	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNK2	10188	broad.mit.edu	37	3	195615192	195615192	+	Intron	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNK2	10188	broad.mit.edu	37	3	195615199	195615199	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3	7137	broad.mit.edu	37	19	55665260	55665260	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175048440	175048441	+	Intron	INS	-	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175323782	175323782	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP1MT	116447	broad.mit.edu	37	8	144444959	144444959	+	5'Flank	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH1	7166	broad.mit.edu	37	11	18062188	18062188	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1480976	1480976	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31368994	31368994	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49703715	49703715	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179489860	179489860	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH2	94015	broad.mit.edu	37	17	72256330	72256330	+	Silent	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP2	10844	broad.mit.edu	37	10	135101728	135101728	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP4	56995	broad.mit.edu	37	6	158910480	158910480	+	Intron	SNP	A	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA3	9039	broad.mit.edu	37	3	69127009	69127009	+	Silent	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3A	7337	broad.mit.edu	37	15	25600999	25600999	+	Intron	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3B	89910	broad.mit.edu	37	12	109926250	109926250	+	Intron	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT1	56886	broad.mit.edu	37	2	128914952	128914952	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96181717	96181717	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRC1	7384	broad.mit.edu	37	3	48637210	48637210	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USHBP1	83878	broad.mit.edu	37	19	17367579	17367579	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP15	9958	broad.mit.edu	37	12	62795017	62795017	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107446887	107446887	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42681325	42681325	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	109920250	109920250	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48930092	48930092	+	IGR	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89372614	89372614	+	IGR	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	2851236	2851236	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33138754	33138754	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33607733	33607733	+	IGR	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34318441	34318441	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19956968	19956968	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19957154	19957154	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90485932	90485932	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19340320	19340320	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	42025220	42025220	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	86652304	86652305	+	IGR	INS	-	TTTCCTTC	TTTCCTTC	rs151129058	by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20433880	20433880	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22490015	22490015	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	50087360	50087360	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	59693313	59693313	+	IGR	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32369582	32369582	+	IGR	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33412779	33412779	+	IGR	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34641726	34641726	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	58810403	58810403	+	IGR	DEL	C	-	-			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60391449	60391449	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39063535	39063538	+	IGR	DEL	TTCC	-	-	rs71764584		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14630725	14630725	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22793184	22793184	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35874357	35874357	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121245260	121245260	+	IGR	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	26846553	26846553	+	IGR	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	55833517	55833517	+	IGR	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	68708688	68708688	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80749235	80749235	+	IGR	SNP	G	T	T	rs114797848	by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	143612760	143612760	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	16134365	16134365	+	IGR	DEL	T	-	-			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210010349	210010349	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91924965	91924965	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95425955	95425955	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	127006073	127006073	+	IGR	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163413037	163413037	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	168384430	168384430	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	27046820	27046820	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36810105	36810105	+	IGR	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	130060719	130060719	+	IGR	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13979666	13979666	+	IGR	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49507940	49507940	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69166726	69166726	+	IGR	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70222948	70222948	+	IGR	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70223037	70223037	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110284037	110284037	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	127122259	127122259	+	IGR	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39719092	39719092	+	IGR	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	60039760	60039760	+	IGR	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97913143	97913143	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28937855	28937855	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	56297531	56297531	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85997236	85997236	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143774770	143774770	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152143977	152143977	+	IGR	SNP	A	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63459422	63459423	+	IGR	DNP	GG	TT	TT			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	13562780	13562780	+	IGR	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43395501	43395501	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	90426858	90426858	+	IGR	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	101481455	101481456	+	IGR	DNP	TG	CT	CT			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	105279467	105279467	+	IGR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	116613552	116613552	+	IGR	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30800435	30800435	+	IGR	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	98175652	98175652	+	IGR	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100055614	100055614	+	IGR	SNP	T	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106844631	106844631	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115807692	115807692	+	IGR	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115882895	115882895	+	IGR	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134745721	134745721	+	IGR	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	142889748	142889748	+	IGR	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	35779783	35779783	+	IGR	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48014264	48014264	+	IGR	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	51722993	51722993	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	57705710	57705710	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	61998755	61998755	+	IGR	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63652934	63652934	+	IGR	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	94754773	94754773	+	IGR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL3	389136	broad.mit.edu	37	3	87017782	87017782	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM1	284415	broad.mit.edu	37	19	54554771	54554771	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98809610	98809610	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAS	7454	broad.mit.edu	37	X	48546713	48546713	+	Silent	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241886443	241886443	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR78	79819	broad.mit.edu	37	1	67370902	67370902	+	Silent	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WHSC1	7468	broad.mit.edu	37	4	1955058	1955058	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT2B	7482	broad.mit.edu	37	1	113059924	113059924	+	Missense_Mutation	SNP	G	A	A	rs143127439		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBED2	79413	broad.mit.edu	37	3	111313116	111313116	+	5'UTR	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H12B	340554	broad.mit.edu	37	X	64722402	64722402	+	Silent	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF100	163227	broad.mit.edu	37	19	21910505	21910505	+	Silent	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF133	7692	broad.mit.edu	37	20	18296289	18296289	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF229	7772	broad.mit.edu	37	19	44932705	44932705	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF28	7576	broad.mit.edu	37	19	53302200	53302200	+	3'UTR	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF354C	30832	broad.mit.edu	37	5	178503473	178503473	+	Missense_Mutation	SNP	G	C	C	rs138654012		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF410	57862	broad.mit.edu	37	14	74370901	74370901	+	Intron	SNP	T	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31047980	31047980	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF567	163081	broad.mit.edu	37	19	37210123	37210123	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF578	147660	broad.mit.edu	37	19	53014631	53014631	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	59677	59677	+	Intron	SNP	T	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF618	114991	broad.mit.edu	37	9	116750742	116750742	+	Silent	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF674	641339	broad.mit.edu	37	X	46388454	46388454	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63674406	63674406	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF80	7634	broad.mit.edu	37	3	113955745	113955745	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF814	730051	broad.mit.edu	37	19	58384234	58384234	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57768689	57768689	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	102189358	102189358	+	Intron	SNP	C	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5A	79149	broad.mit.edu	37	19	56736248	56736248	+	Silent	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5A	79149	broad.mit.edu	37	19	56833712	56833712	+	Intron	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	113660973	113660973	+	RNA	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30914596	30914596	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80749424	80749424	+	5'Flank	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20644051	20644051	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33784701	33784701	+	Missense_Mutation	SNP	C	G	G	rs142648569	by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29199070	29199070	+	Intron	SNP	G	T	T			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121116787	121116787	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95599362	95599362	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69337091	69337091	+	Intron	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	33162297	33162297	+	RNA	SNP	C	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142247404	142247404	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142471725	142471725	+	Intron	SNP	G	A	A			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	75516110	75516110	+	Intron	SNP	G	A	A	rs145127984	by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
