Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
TNFRSF9	3604	broad.mit.edu	36	1	7922616	7922616	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7922616	7922616	TNFRSF9	1	A	A	T	14
YBX1	4904	broad.mit.edu	36	1	42921706	42921706	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	42921706	42921706	YBX1	1	G	G	T	41
NPR1	4881	broad.mit.edu	36	1	151926389	151926389	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	151926389	151926389	NPR1	1	G	G	A	33
PFKP	5214	broad.mit.edu	36	10	3164604	3164604	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3164604	3164604	PFKP	10	G	G	C	33
KIAA1462	57608	broad.mit.edu	36	10	30356945	30356945	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30356945	30356945	KIAA1462	10	G	G	C	39
AGAP8	728404	broad.mit.edu	36	10	50895039	50895039	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	50895039	50895039	AGAP8	10	A	A	T	12
PSD	5662	broad.mit.edu	36	10	104166290	104166290	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	104166290	104166290	PSD	10	C	C	T	26
OR6A2	8590	broad.mit.edu	36	11	6772720	6772720	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6772720	6772720	OR6A2	11	G	G	A	37
A2ML1	144568	broad.mit.edu	36	12	8882264	8882264	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	8882264	8882264	A2ML1	12	G	G	A	40
PDE1B	5153	broad.mit.edu	36	12	53256677	53256677	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	53256677	53256677	PDE1B	12	G	G	A	48
TIMELESS	8914	broad.mit.edu	36	12	55103349	55103349	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	55103349	55103349	TIMELESS	12	A	A	G	6
MTIF3	219402	broad.mit.edu	36	13	26909388	26909388	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	26909388	26909388	MTIF3	13	C	C	A	29
C13orf23	80209	broad.mit.edu	36	13	38484999	38484999	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38484999	38484999	C13orf23	13	G	G	C	47
HOMEZ	57594	broad.mit.edu	36	14	22814962	22814962	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	22814962	22814962	HOMEZ	14	G	G	T	44
CLEC14A	161198	broad.mit.edu	36	14	37794184	37794184	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37794184	37794184	CLEC14A	14	G	G	C	36
SYNE2	23224	broad.mit.edu	36	14	63759661	63759661	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	63759661	63759661	SYNE2	14	A	A	C	5
OCA2	4948	broad.mit.edu	36	15	25902144	25902144	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	25902144	25902144	OCA2	15	G	G	C	36
INO80	54617	broad.mit.edu	36	15	39063352	39063352	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	39063352	39063352	INO80	15	G	G	A	48
MGRN1	23295	broad.mit.edu	36	16	4658286	4658286	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	4658286	4658286	MGRN1	16	C	C	T	32
IL21R	50615	broad.mit.edu	36	16	27367753	27367753	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27367753	27367753	IL21R	16	G	G	A	43
RBL2	5934	broad.mit.edu	36	16	52061578	52061578	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52061578	52061578	RBL2	16	C	C	T	19
ZNF319	57567	broad.mit.edu	36	16	56588171	56588171	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	56588171	56588171	ZNF319	16	G	G	A	44
HYDIN	54768	broad.mit.edu	36	16	69512218	69512219	+	Missense_Mutation	DNP	GT	GT	AG	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	69512218	69512219	HYDIN	16	GT	GT	AG	40
KRTAP9-3	83900	broad.mit.edu	36	17	36642507	36642507	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	36642507	36642507	KRTAP9-3	17	T	T	C	57
GPR142	350383	broad.mit.edu	36	17	69875436	69875436	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	69875436	69875436	GPR142	17	G	G	A	47
DNAH17	8632	broad.mit.edu	36	17	73967479	73967479	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73967479	73967479	DNAH17	17	G	G	C	42
CETN1	1068	broad.mit.edu	36	18	570898	570898	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	570898	570898	CETN1	18	C	C	T	31
ALPK2	115701	broad.mit.edu	36	18	54354532	54354532	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	54354532	54354532	ALPK2	18	G	G	A	43
FBXO15	201456	broad.mit.edu	36	18	69891772	69891772	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	69891772	69891772	FBXO15	18	C	C	A	21
TUBB4	10382	broad.mit.edu	36	19	6446297	6446297	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6446297	6446297	TUBB4	19	C	C	T	31
ZNF441	126068	broad.mit.edu	36	19	11752822	11752822	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	11752822	11752822	ZNF441	19	G	G	C	45
TRMT1	55621	broad.mit.edu	36	19	13081216	13081216	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	13081216	13081216	TRMT1	19	G	G	A	48
RYR1	6261	broad.mit.edu	36	19	43624902	43624902	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43624902	43624902	RYR1	19	T	T	A	51
GRLF1	2909	broad.mit.edu	36	19	52115114	52115115	+	Missense_Mutation	DNP	CC	CC	TT	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	52115114	52115115	GRLF1	19	CC	CC	TT	30
GRLF1	2909	broad.mit.edu	36	19	52115528	52115528	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	52115528	52115528	GRLF1	19	C	C	T	29
ZNF611	81856	broad.mit.edu	36	19	57900299	57900299	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	57900299	57900299	ZNF611	19	T	T	A	51
ZNF776	284309	broad.mit.edu	36	19	62957005	62957005	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	62957005	62957005	ZNF776	19	G	G	C	33
INPP5D	3635	broad.mit.edu	36	2	233698786	233698786	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	233698786	233698786	INPP5D	2	C	C	G	29
ZNF217	7764	broad.mit.edu	36	20	51625714	51625714	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	51625714	51625714	ZNF217	20	C	C	G	17
KREMEN1	83999	broad.mit.edu	36	22	27867934	27867934	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27867934	27867934	KREMEN1	22	C	C	T	30
PIK3IP1	113791	broad.mit.edu	36	22	30009151	30009151	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	30009151	30009151	PIK3IP1	22	C	C	G	21
SENP7	57337	broad.mit.edu	36	3	102533628	102533628	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	102533628	102533628	SENP7	3	G	G	A	37
ECE2	9718	broad.mit.edu	36	3	185484334	185484334	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	185484334	185484334	ECE2	3	C	C	T	19
WDR55	54853	broad.mit.edu	36	5	140029001	140029001	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140029001	140029001	WDR55	5	A	A	C	6
MUC21	394263	broad.mit.edu	36	6	31059720	31059720	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	31059720	31059720	MUC21	6	G	G	A	33
MUC21	394263	broad.mit.edu	36	6	31062239	31062239	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31062239	31062239	MUC21	6	G	G	A	34
MUC21	394263	broad.mit.edu	36	6	31062412	31062412	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31062412	31062412	MUC21	6	G	G	A	45
GPR141	353345	broad.mit.edu	36	7	37747314	37747314	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37747314	37747314	GPR141	7	A	A	G	16
MAGI2	9863	broad.mit.edu	36	7	77723552	77723552	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	77723552	77723552	MAGI2	7	C	C	T	23
TRPV5	56302	broad.mit.edu	36	7	142335310	142335310	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	142335310	142335310	TRPV5	7	G	G	T	40
ZNF212	7988	broad.mit.edu	36	7	148582403	148582403	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	148582403	148582403	ZNF212	7	G	G	A	47
CACNA1F	778	broad.mit.edu	36	X	48951974	48951974	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	48951974	48951974	CACNA1F	23	C	C	T	22
ARMCX2	9823	broad.mit.edu	36	X	100798796	100798796	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	100798796	100798796	ARMCX2	23	C	C	T	29
SUSD2	56241	broad.mit.edu	36	22	22909157	22909158	+	Frame_Shift_Del	DEL	GA	-	GA	novel	Unknown	TCGA-25-2398-01	TCGA-25-2398-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	22909157	22909158	SUSD2	22	GA	-	GA	41
