Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCB9	23457	broad.mit.edu	37	12	123434444	123434444	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	21970286	21970286	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	21997651	21997651	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG8	64241	broad.mit.edu	37	2	44079961	44079961	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD11	83451	broad.mit.edu	37	7	73151153	73151153	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADM	34	broad.mit.edu	37	1	76194211	76194211	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAT1	38	broad.mit.edu	37	11	108012461	108012461	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN2	41	broad.mit.edu	37	12	50472281	50472281	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACP6	51205	broad.mit.edu	37	1	147124193	147124193	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131324610	131324610	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20448550	20448550	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS3	79611	broad.mit.edu	37	12	81545902	81545902	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR5	79913	broad.mit.edu	37	20	37380703	37380703	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM28	10863	broad.mit.edu	37	8	24209637	24209637	+	Intron	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM33	80332	broad.mit.edu	37	20	3655230	3655230	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106110951	106110952	+	RNA	DNP	GG	TT	TT			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107169952	107169952	+	RNA	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33588685	33588685	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77331205	77331205	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43862482	43862482	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7709407	7709407	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGR3	155465	broad.mit.edu	37	7	16900155	16900155	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109674307	109674307	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247018989	247018989	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AICDA	57379	broad.mit.edu	37	12	8757007	8757007	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNA	80709	broad.mit.edu	37	9	117139109	117139109	+	Silent	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPL	249	broad.mit.edu	37	1	21902329	21902329	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPTL2	23452	broad.mit.edu	37	9	129851286	129851286	+	Nonsense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41519586	41519586	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114291045	114291045	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20A4	728747	broad.mit.edu	37	9	69382304	69382304	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD53	79998	broad.mit.edu	37	2	71206297	71206297	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD54	129138	broad.mit.edu	37	22	38229004	38229004	+	Silent	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99145080	99145080	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101436171	101436171	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA2	302	broad.mit.edu	37	15	60641388	60641388	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3D1	8943	broad.mit.edu	37	19	2115422	2115422	+	Intron	SNP	G	A	A	rs116599347	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141059477	141059477	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP21	57584	broad.mit.edu	37	10	24884819	24884819	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF10L	55160	broad.mit.edu	37	1	17983154	17983154	+	Silent	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF12	23365	broad.mit.edu	37	11	120316256	120316256	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL16	339231	broad.mit.edu	37	17	79650818	79650818	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3002330	3002330	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSH	347527	broad.mit.edu	37	X	2947341	2947341	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62580819	62580819	+	Intron	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177001424	177001424	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160136342	160136342	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160136563	160136563	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77254174	77254174	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALNT1	8706	broad.mit.edu	37	3	160803475	160803475	+	3'UTR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156617579	156617579	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	59024539	59024539	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCOR	54880	broad.mit.edu	37	X	39933725	39933726	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND6	221336	broad.mit.edu	37	6	56840664	56840664	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST3	144453	broad.mit.edu	37	12	70087526	70087526	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL1	80341	broad.mit.edu	37	20	31601577	31601577	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL1	80341	broad.mit.edu	37	20	31608184	31608184	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRF1	2972	broad.mit.edu	37	14	105692627	105692627	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSPRY	54836	broad.mit.edu	37	9	116116511	116116511	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	107914368	107914368	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108011250	108011250	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf28	27291	broad.mit.edu	37	10	99991416	99991416	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf50	645528	broad.mit.edu	37	10	26880231	26880231	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf87	399947	broad.mit.edu	37	11	109294974	109294974	+	3'UTR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40076706	40076707	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf26	122046	broad.mit.edu	37	13	31506822	31506822	+	5'Flank	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf177	283598	broad.mit.edu	37	14	99182744	99182744	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf48	256369	broad.mit.edu	37	14	94465924	94465924	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf48	256369	broad.mit.edu	37	14	94469445	94469445	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf41	84529	broad.mit.edu	37	15	36936445	36936445	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf78	284099	broad.mit.edu	37	17	35742976	35742976	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf22	91300	broad.mit.edu	37	19	899546	899546	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75065534	75065534	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf187	374946	broad.mit.edu	37	1	11769250	11769250	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34663245	34663245	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34684274	34684274	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20177420	20177420	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20180558	20180558	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113541279	113541279	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf34	375444	broad.mit.edu	37	5	43509410	43509410	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165715670	165715670	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	47846409	47846409	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf218	221718	broad.mit.edu	37	6	10430114	10430114	+	RNA	SNP	T	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf53	286006	broad.mit.edu	37	7	112124764	112124764	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57420289	57420289	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53531424	53531424	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48680470	48680470	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201043678	201043678	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27465587	27465587	+	Missense_Mutation	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO2	10241	broad.mit.edu	37	17	46928611	46928611	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93090352	93090352	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALHM1	255022	broad.mit.edu	37	10	105218594	105218594	+	5'UTR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMSAP1	157922	broad.mit.edu	37	9	138714662	138714662	+	Silent	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN2	824	broad.mit.edu	37	1	223949390	223949390	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPZB	832	broad.mit.edu	37	1	19665987	19665987	+	3'UTR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASKIN1	57524	broad.mit.edu	37	16	2233816	2233816	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBR3	874	broad.mit.edu	37	21	37518591	37518591	+	Silent	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92921085	92921085	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC40	55036	broad.mit.edu	37	17	78021138	78021138	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC81	60494	broad.mit.edu	37	11	86106346	86106346	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR2	729230	broad.mit.edu	37	3	46400068	46400068	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072677	17072677	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD101	9398	broad.mit.edu	37	1	117561104	117561104	+	Silent	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7531644	7531644	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD226	10666	broad.mit.edu	37	18	67540336	67540336	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300A	11314	broad.mit.edu	37	17	72470860	72470860	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD6	923	broad.mit.edu	37	11	60780728	60780728	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDAN1	146059	broad.mit.edu	37	15	43027805	43027805	+	Silent	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14A	8556	broad.mit.edu	37	1	100964529	100964529	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14C	168448	broad.mit.edu	37	7	48965231	48965231	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83635987	83635987	+	Intron	SNP	C	T	T	rs151197808	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95188777	95188777	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61689273	61689273	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK18	5129	broad.mit.edu	37	1	205495790	205495790	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK20	23552	broad.mit.edu	37	9	90588985	90588985	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM16	388551	broad.mit.edu	37	19	45206812	45206812	+	Silent	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR1	51816	broad.mit.edu	37	22	17669245	17669245	+	Missense_Mutation	SNP	G	T	T	rs116020027	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP135	9662	broad.mit.edu	37	4	56878095	56878095	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP350	9857	broad.mit.edu	37	1	179988994	179988994	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CETN2	1069	broad.mit.edu	37	X	151997692	151997693	+	Splice_Site	DNP	CC	AA	AA			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB	1082	broad.mit.edu	37	19	49548166	49548166	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6185922	6185922	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHERP	10523	broad.mit.edu	37	19	16640580	16640580	+	Silent	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	383704	383704	+	Silent	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRDL1	91851	broad.mit.edu	37	X	109919536	109919536	+	Missense_Mutation	SNP	T	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136700630	136700630	+	Missense_Mutation	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST10	9486	broad.mit.edu	37	2	101010245	101010245	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHUK	1147	broad.mit.edu	37	10	101982738	101982738	+	Splice_Site	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIITA	4261	broad.mit.edu	37	16	11016071	11016071	+	Missense_Mutation	SNP	G	T	T	rs142072017		TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57937651	57937651	+	Intron	SNP	C	A	A	rs117427943	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTF	1270	broad.mit.edu	37	11	58391556	58391556	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3030016	3030016	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76573654	76573654	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125281898	125281898	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COIL	8161	broad.mit.edu	37	17	55038469	55038469	+	5'Flank	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103354273	103354273	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103400227	103400227	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103444316	103444317	+	Intron	INS	-	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101807041	101807041	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86289114	86289114	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61449932	61449932	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC11	78989	broad.mit.edu	37	2	3651775	3651775	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC12	81035	broad.mit.edu	37	18	334694	334694	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131293942	131293942	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211515045	211515045	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP2	7180	broad.mit.edu	37	6	49665556	49665556	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	33992844	33992844	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34071500	34071500	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113347757	113347757	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113871274	113871274	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTA	1475	broad.mit.edu	37	3	122060408	122060408	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTF2T	23283	broad.mit.edu	37	10	53458658	53458658	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	10992502	10992502	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11346809	11346809	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTN	2017	broad.mit.edu	37	11	70256086	70256086	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16867009	16867009	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16957317	16957317	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17157611	17157611	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL2	8453	broad.mit.edu	37	10	35333791	35333791	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL2	8453	broad.mit.edu	37	10	35333797	35333797	+	Splice_Site	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101847700	101847700	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXADRP2	646243	broad.mit.edu	37	15	22015678	22015678	+	3'UTR	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXADRP2	646243	broad.mit.edu	37	15	22016244	22016244	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5R1	51706	broad.mit.edu	37	1	202934681	202934681	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYHR1	50626	broad.mit.edu	37	8	145690322	145690322	+	5'UTR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLD	1540	broad.mit.edu	37	16	50828404	50828404	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2E1	1571	broad.mit.edu	37	10	135371582	135371582	+	3'UTR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A5	1577	broad.mit.edu	37	7	99260305	99260305	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP46A1	10858	broad.mit.edu	37	14	100182493	100182493	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F3	4051	broad.mit.edu	37	19	15769365	15769365	+	Silent	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM1	23002	broad.mit.edu	37	14	59798619	59798619	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBH	1621	broad.mit.edu	37	9	136501597	136501597	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6652473	6652473	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDO	8528	broad.mit.edu	37	6	110714106	110714106	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162748381	162748381	+	Silent	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14216296	14216296	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137269862	137269862	+	Intron	SNP	C	G	G	rs149233725	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137294217	137294217	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS7C	201140	broad.mit.edu	37	17	9674801	9674802	+	3'UTR	DNP	GC	AG	AG			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX32	55760	broad.mit.edu	37	10	127555505	127555505	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47954024	47954024	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83676300	83676300	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBX1	127343	broad.mit.edu	37	1	46978111	46978112	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL2	23312	broad.mit.edu	37	15	51780775	51780775	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13885124	13885124	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25469539	25469539	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25498451	25498451	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3L	29947	broad.mit.edu	37	21	45671613	45671613	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37617641	37617641	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPH1	1801	broad.mit.edu	37	17	1936926	1936926	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28979469	28979469	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTX2	113878	broad.mit.edu	37	7	76112259	76112259	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP22	56940	broad.mit.edu	37	6	348400	348400	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNLRB2	83657	broad.mit.edu	37	16	80584308	80584308	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158141019	158141019	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDARADD	128178	broad.mit.edu	37	1	236645937	236645937	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDARADD	128178	broad.mit.edu	37	1	236646542	236646542	+	3'UTR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF2	1938	broad.mit.edu	37	19	3985437	3985437	+	5'UTR	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB3	146779	broad.mit.edu	37	17	60469123	60469123	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENSA	2029	broad.mit.edu	37	1	150601933	150601933	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34761599	34761599	+	Intron	SNP	T	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L2	2037	broad.mit.edu	37	6	131276035	131276035	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	111956698	111956698	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPC2	26122	broad.mit.edu	37	2	149542282	149542282	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134920202	134920202	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142563342	142563342	+	Silent	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142565987	142565987	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8L3	79574	broad.mit.edu	37	1	110293311	110293311	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EREG	2069	broad.mit.edu	37	4	75246765	75246765	+	Silent	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETNK2	55224	broad.mit.edu	37	1	204103601	204103601	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS2	2114	broad.mit.edu	37	21	40194579	40194579	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC3	11336	broad.mit.edu	37	5	458042	458042	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66205086	66205086	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZH1	2145	broad.mit.edu	37	17	40860860	40860860	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZH2	2146	broad.mit.edu	37	7	148511235	148511235	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZR	7430	broad.mit.edu	37	6	159208242	159208243	+	Intron	DEL	GA	-	-			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11R	50848	broad.mit.edu	37	1	161004746	161004746	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2	2147	broad.mit.edu	37	11	46750885	46750885	+	Intron	DEL	C	-	-			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAF2	23197	broad.mit.edu	37	5	175933972	175933972	+	3'UTR	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131519727	131519727	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM160A2	84067	broad.mit.edu	37	11	6239874	6239874	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171B	165215	broad.mit.edu	37	2	187626438	187626438	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM193A	8603	broad.mit.edu	37	4	2695659	2695659	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B1	100130302	broad.mit.edu	37	X	24383507	24383507	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A3	727830	broad.mit.edu	37	9	40702715	40702715	+	Silent	SNP	T	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10140745	10140745	+	3'UTR	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150946774	150946774	+	Silent	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92086706	92086706	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92535112	92535112	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92616483	92616483	+	Silent	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL18	80028	broad.mit.edu	37	7	5540694	5540694	+	Silent	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO10	26267	broad.mit.edu	37	9	37516063	37516063	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO21	23014	broad.mit.edu	37	12	117612321	117612321	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO36	130888	broad.mit.edu	37	2	230861624	230861624	+	Silent	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124998416	124998416	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERMT3	83706	broad.mit.edu	37	11	63987585	63987585	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP10	60681	broad.mit.edu	37	17	39974501	39974501	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152284188	152284188	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLI1	2313	broad.mit.edu	37	11	128642980	128642980	+	Intron	DEL	G	-	-			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28963910	28963910	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29005449	29005449	+	Splice_Site	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240458238	240458238	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN1	8456	broad.mit.edu	37	17	26851543	26851543	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP1	27086	broad.mit.edu	37	3	71021608	71021608	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79343066	79343066	+	Silent	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14859286	14859287	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37733495	37733495	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTCD	10841	broad.mit.edu	37	21	47570097	47570097	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD7	53822	broad.mit.edu	37	19	35642126	35642126	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD1	8321	broad.mit.edu	37	7	90895971	90895971	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G3BP1	10146	broad.mit.edu	37	5	151179556	151179556	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46390663	46390663	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD1	2571	broad.mit.edu	37	2	171702584	171702584	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173269651	173269651	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2	2620	broad.mit.edu	37	11	22696347	22696347	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22729631	22729631	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCK	2645	broad.mit.edu	37	7	44190501	44190501	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120580689	120580689	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFAP	2670	broad.mit.edu	37	17	42985523	42985523	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55198792	55198792	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA1	2697	broad.mit.edu	37	6	121768009	121768009	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT1D1	144423	broad.mit.edu	37	12	129467431	129467431	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121411082	121411082	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GORAB	92344	broad.mit.edu	37	1	170508612	170508612	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GORAB	92344	broad.mit.edu	37	1	170513848	170513848	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167038228	167038228	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC2	221914	broad.mit.edu	37	7	99773222	99773222	+	Silent	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR50	9248	broad.mit.edu	37	X	150348520	150348520	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB2	2885	broad.mit.edu	37	17	73316567	73316567	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA3	2892	broad.mit.edu	37	X	122319800	122319800	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	10031897	10031897	+	Missense_Mutation	SNP	T	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9935019	9935019	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34008232	34008232	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7620535	7620535	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM1	2944	broad.mit.edu	37	1	110231399	110231399	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106810239	106810239	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAL	3034	broad.mit.edu	37	12	96387882	96387882	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS1	3036	broad.mit.edu	37	19	52219651	52219651	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR1	26762	broad.mit.edu	37	5	156469690	156469690	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153223100	153223100	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC11	79885	broad.mit.edu	37	3	13524875	13524875	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18705968	18705968	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18868809	18868810	+	Frame_Shift_Ins	INS	-	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDLBP	3069	broad.mit.edu	37	2	242170421	242170421	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65411952	65411952	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91844775	91844775	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIAT1	64645	broad.mit.edu	37	1	100533603	100533603	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H4E	8367	broad.mit.edu	37	6	26202877	26202877	+	5'Flank	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST1	9394	broad.mit.edu	37	2	129025701	129025701	+	3'UTR	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118510677	118510677	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3B	9177	broad.mit.edu	37	11	113803683	113803683	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA3	94031	broad.mit.edu	37	4	8304267	8304267	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUS1B	135458	broad.mit.edu	37	6	656684	656684	+	Silent	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71007834	71007834	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFITM5	387733	broad.mit.edu	37	11	299433	299433	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA4	3441	broad.mit.edu	37	9	21187546	21187546	+	5'UTR	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT172	26160	broad.mit.edu	37	2	27679286	27679286	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC3	9543	broad.mit.edu	37	15	65621153	65621153	+	3'UTR	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2	3481	broad.mit.edu	37	11	2155357	2155357	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP6	3489	broad.mit.edu	37	12	53494882	53494882	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133790344	133790344	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL10RA	3587	broad.mit.edu	37	11	117864126	117864126	+	Splice_Site	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35861272	35861272	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPDH1	3614	broad.mit.edu	37	7	128041179	128041179	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100948472	100948472	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15198682	15198682	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSIG1	3638	broad.mit.edu	37	7	155100178	155100178	+	3'UTR	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSR	3643	broad.mit.edu	37	19	7162969	7162969	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTU	27152	broad.mit.edu	37	4	128637582	128637582	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75806716	75806717	+	Intron	DNP	TC	AA	AA			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF4	3662	broad.mit.edu	37	6	394900	394900	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITCH	83737	broad.mit.edu	37	20	33001615	33001615	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31336212	31336212	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31384813	31384813	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52823629	52823629	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7759586	7759586	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156638227	156638227	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26628208	26628208	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6086641	6086641	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JHDM1D	80853	broad.mit.edu	37	7	139800006	139800006	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64945331	64945331	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64952769	64952769	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMY	133746	broad.mit.edu	37	5	78580128	78580128	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMY	133746	broad.mit.edu	37	5	78580148	78580148	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB1	3745	broad.mit.edu	37	20	47990014	47990014	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211093022	211093022	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH4	23415	broad.mit.edu	37	17	40312564	40312564	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63246542	63246542	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88729781	88729781	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138670418	138670418	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	7049120	7049120	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1274	27143	broad.mit.edu	37	10	72291088	72291088	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1467	57613	broad.mit.edu	37	12	13232874	13232874	+	Silent	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1751	85452	broad.mit.edu	37	1	1897854	1897854	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13A	63971	broad.mit.edu	37	6	17817465	17817465	+	Splice_Site	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72339142	72339142	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF24	347240	broad.mit.edu	37	9	34263190	34263190	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLB	152831	broad.mit.edu	37	4	39439587	39439587	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA2	3838	broad.mit.edu	37	17	66040631	66040631	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KREMEN1	83999	broad.mit.edu	37	22	29534514	29534514	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT1	3848	broad.mit.edu	37	12	53069297	53069297	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT82	3888	broad.mit.edu	37	12	52793777	52793777	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21441624	21441624	+	Silent	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1	23367	broad.mit.edu	37	5	154179044	154179044	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARS	51520	broad.mit.edu	37	5	145562004	145562004	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD3	143458	broad.mit.edu	37	11	36057809	36057809	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS13	29124	broad.mit.edu	37	19	40097972	40097972	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG3	3980	broad.mit.edu	37	17	33319679	33319679	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN2L	81562	broad.mit.edu	37	2	97377555	97377555	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76427505	76427505	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMTK2	22853	broad.mit.edu	37	7	97821047	97821047	+	Nonsense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNPEP	4012	broad.mit.edu	37	5	96278781	96278781	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC349196	349196	broad.mit.edu	37	8	7191282	7191282	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC642846	642846	broad.mit.edu	37	12	9463597	9463597	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21936810	21936810	+	RNA	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22664776	22664776	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23198902	23198902	+	Intron	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23261850	23261850	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOX	4015	broad.mit.edu	37	5	121413408	121413408	+	Silent	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161016267	161016267	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH3	84859	broad.mit.edu	37	3	197544201	197544202	+	Intron	DEL	AT	-	-	rs1273552	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141441479	141441479	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141643727	141643727	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP8	7804	broad.mit.edu	37	1	53716632	53716632	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC10	376132	broad.mit.edu	37	12	70004184	70004184	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC25	126364	broad.mit.edu	37	19	18507413	18507413	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70446171	70446171	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85521630	85521630	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN2	10446	broad.mit.edu	37	1	204588373	204588373	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN3	54674	broad.mit.edu	37	7	110764808	110764808	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM11	134353	broad.mit.edu	37	5	157182279	157182279	+	3'UTR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33246320	33246320	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33540140	33540141	+	Intron	DNP	CA	AT	AT			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33590483	33590483	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	24998134	24998134	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160708664	160708664	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED2	10916	broad.mit.edu	37	X	54839689	54839689	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1D	254042	broad.mit.edu	37	2	172945218	172945218	+	3'UTR	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1D	254042	broad.mit.edu	37	2	172945222	172945222	+	3'UTR	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1LC3C	440738	broad.mit.edu	37	1	242161853	242161853	+	Nonsense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH4	57574	broad.mit.edu	37	2	217148264	217148264	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119732244	119732244	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186953530	186953530	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBP	4155	broad.mit.edu	37	18	74701873	74701873	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART2	147407	broad.mit.edu	37	18	29340603	29340603	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2L2	23101	broad.mit.edu	37	3	182934005	182934005	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA1	266727	broad.mit.edu	37	6	37617810	37617810	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126738207	126738207	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEPE	56955	broad.mit.edu	37	4	88767696	88767696	+	3'UTR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT11D1	64745	broad.mit.edu	37	14	21458132	21458132	+	5'UTR	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL1	4234	broad.mit.edu	37	12	58165850	58165856	+	Frame_Shift_Del	DEL	CGAGTCT	-	-			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL2B	55798	broad.mit.edu	37	7	128116783	128116783	+	5'UTR	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141778563	141778563	+	Intron	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR487A	619555	broad.mit.edu	37	14	101516046	101516046	+	5'Flank	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKLN1	4289	broad.mit.edu	37	7	130927493	130927493	+	Intron	SNP	G	A	A	rs149512727	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKS1	54903	broad.mit.edu	37	17	56283513	56283513	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLKL	197259	broad.mit.edu	37	16	74709403	74709403	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49435674	49435674	+	Intron	SNP	C	A	A	rs74413240		TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151945162	151945162	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151962128	151962128	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP13	4322	broad.mit.edu	37	11	102818698	102818698	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89053848	89053848	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP27	64066	broad.mit.edu	37	11	102576439	102576439	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55519725	55519725	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN2	79812	broad.mit.edu	37	10	88703608	88703608	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH9	10198	broad.mit.edu	37	12	123641456	123641456	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC1	4360	broad.mit.edu	37	10	17875916	17875916	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH6	2956	broad.mit.edu	37	2	48032810	48032810	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121467628	121467628	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11270888	11270888	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9048356	9048356	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100682645	100682645	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100699565	100699565	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL1	4603	broad.mit.edu	37	8	67524893	67524893	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYEOV	26579	broad.mit.edu	37	11	69063537	69063537	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10253943	10253943	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10404159	10404159	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10408603	10408603	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL1	4632	broad.mit.edu	37	2	211179550	211179550	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16902321	16902322	+	Intron	INS	-	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO19	80179	broad.mit.edu	37	17	34859855	34859855	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1G	64005	broad.mit.edu	37	7	45005450	45005450	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76886414	76886414	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2057240	2057240	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1926245	1926245	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NASP	4678	broad.mit.edu	37	1	46081054	46081054	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78392348	78392348	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16902974	16902974	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAN	1463	broad.mit.edu	37	19	19334856	19334856	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134022833	134022833	+	3'UTR	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134038953	134038953	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCSTN	23385	broad.mit.edu	37	1	160321647	160321647	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDEL1	81565	broad.mit.edu	37	17	8350154	8350154	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK7	140609	broad.mit.edu	37	1	198225496	198225496	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20939724	20939724	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22148551	22148551	+	5'Flank	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGEF	25791	broad.mit.edu	37	2	233834989	233834989	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236195839	236195839	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55512301	55512301	+	3'UTR	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247588096	247588096	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34243744	34243744	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44560479	44560479	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPDC1	56654	broad.mit.edu	37	9	139934536	139934536	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPEPL1	79716	broad.mit.edu	37	20	57287640	57287640	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP4	261734	broad.mit.edu	37	1	5948762	5948762	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR3	4883	broad.mit.edu	37	5	32739117	32739117	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NQO2	4835	broad.mit.edu	37	6	3019784	3019784	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84498364	84498364	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206617766	206617766	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64390552	64390552	+	Splice_Site	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64418893	64418893	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTF3	4908	broad.mit.edu	37	12	5603704	5603704	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135322900	135322900	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210	23225	broad.mit.edu	37	3	13384856	13384856	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP37	79023	broad.mit.edu	37	12	102512147	102512147	+	Silent	SNP	C	A	A	rs139625051	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228482094	228482094	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28171326	28171326	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A7	121364	broad.mit.edu	37	12	55615132	55615132	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C2	392376	broad.mit.edu	37	9	107367587	107367587	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG1	144125	broad.mit.edu	37	11	6806979	6806979	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L8	391190	broad.mit.edu	37	1	248112520	248112520	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248436623	248436623	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A16	81327	broad.mit.edu	37	11	55111191	55111191	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D6	219983	broad.mit.edu	37	11	59224871	59224871	+	Silent	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K17	390436	broad.mit.edu	37	14	20586080	20586080	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52H1	390067	broad.mit.edu	37	11	5566115	5566115	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52I2	143502	broad.mit.edu	37	11	4608223	4608223	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N4	390072	broad.mit.edu	37	11	5776387	5776387	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A3	390083	broad.mit.edu	37	11	5969347	5969347	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AS1	219447	broad.mit.edu	37	11	55798258	55798258	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H2	79310	broad.mit.edu	37	3	98002178	98002178	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N2	81442	broad.mit.edu	37	1	158746816	158746816	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6Y1	391112	broad.mit.edu	37	1	158517140	158517140	+	Silent	SNP	G	C	C	rs114824139	byFrequency;by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7G1	125962	broad.mit.edu	37	19	9225999	9225999	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B8	26493	broad.mit.edu	37	11	124310583	124310583	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8S1	341568	broad.mit.edu	37	12	48920047	48920047	+	Silent	SNP	C	T	T	rs139022158	byFrequency	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9G9	504191	broad.mit.edu	37	11	56468505	56468505	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24911443	24911443	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26690204	26690204	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOS	150677	broad.mit.edu	37	2	241079774	241079774	+	5'UTR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXCT1	5019	broad.mit.edu	37	5	41739717	41739717	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPN1	8106	broad.mit.edu	37	14	23794376	23794376	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI6	353238	broad.mit.edu	37	1	17723578	17723578	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI6	353238	broad.mit.edu	37	1	17723626	17723626	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAH	5053	broad.mit.edu	37	12	103238194	103238194	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAH	5053	broad.mit.edu	37	12	103306519	103306519	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAMR1	25891	broad.mit.edu	37	11	35492424	35492424	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176809253	176809253	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	119097409	119097409	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR3	152559	broad.mit.edu	37	4	79851513	79851513	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	205983604	205983604	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVA	55742	broad.mit.edu	37	11	12499565	12499565	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134073607	134073607	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91715193	91715193	+	Intron	SNP	T	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55780262	55780262	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207776	58207776	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140581684	140581684	+	Silent	SNP	T	C	C	rs142465110	byFrequency	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140590616	140590616	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165808673	165808673	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6C	5146	broad.mit.edu	37	10	95380423	95380423	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6C	5146	broad.mit.edu	37	10	95394518	95394518	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20370695	20370695	+	Missense_Mutation	SNP	C	A	A	rs142976690	byFrequency	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDP1	54704	broad.mit.edu	37	8	94935757	94935758	+	Nonsense_Mutation	DNP	CG	TT	TT			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73433091	73433091	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB3	5209	broad.mit.edu	37	10	6255623	6255623	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGR	5241	broad.mit.edu	37	11	100999187	100999187	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47942152	47942152	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81208553	81208553	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81254001	81254001	+	5'Flank	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110457421	110457421	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	32949210	32949210	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G3	50487	broad.mit.edu	37	22	31534744	31534744	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59814626	59814626	+	3'UTR	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAT	5327	broad.mit.edu	37	8	42037949	42037950	+	Intron	INS	-	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG3	26030	broad.mit.edu	37	14	65197348	65197348	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLUNC	51297	broad.mit.edu	37	20	31827564	31827564	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131908295	131908295	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS1	5378	broad.mit.edu	37	2	190719014	190719014	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L11	441263	broad.mit.edu	37	7	76610372	76610372	+	RNA	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD2	5425	broad.mit.edu	37	7	44156543	44156543	+	Missense_Mutation	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121258460	121258460	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1A	25885	broad.mit.edu	37	2	86271325	86271325	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POMP	51371	broad.mit.edu	37	13	29233235	29233235	+	5'Flank	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEA	340441	broad.mit.edu	37	8	43211932	43211932	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14542475	14542475	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	132021567	132021567	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F1	5463	broad.mit.edu	37	12	51584113	51584113	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA1	8500	broad.mit.edu	37	11	70118299	70118299	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPID	5481	broad.mit.edu	37	4	159638256	159638256	+	Missense_Mutation	SNP	C	A	A	rs146098645		TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37536602	37536602	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R7	5510	broad.mit.edu	37	2	242105748	242105748	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2C	5522	broad.mit.edu	37	4	6513617	6513617	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPTC7	160760	broad.mit.edu	37	12	110983531	110983531	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF1	65121	broad.mit.edu	37	1	12854687	12854687	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF2	65122	broad.mit.edu	37	1	12919588	12919588	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRCP	5547	broad.mit.edu	37	11	82611191	82611191	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23522321	23522321	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47245842	47245842	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47292735	47292735	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69031067	69031067	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG3	10394	broad.mit.edu	37	11	57146032	57146032	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCH	5583	broad.mit.edu	37	14	61788817	61788817	+	5'UTR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48733567	48733567	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48790258	48790258	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53822338	53822338	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35089562	35089562	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT8	56341	broad.mit.edu	37	12	3677879	3677879	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142458580	142458580	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43763160	43763160	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB6	5694	broad.mit.edu	37	17	4701416	4701416	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11574361	11574361	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198665956	198665956	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRF	5792	broad.mit.edu	37	1	44072370	44072370	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	8380268	8380268	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220164680	220164680	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158913507	158913507	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QARS	5859	broad.mit.edu	37	3	49141464	49141464	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173891779	173891779	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARB	5915	broad.mit.edu	37	3	25215855	25215855	+	5'UTR	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARG	5916	broad.mit.edu	37	12	53608973	53608973	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM15	64783	broad.mit.edu	37	1	110882449	110882449	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114385063	114385064	+	Intron	DEL	AC	-	-			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMX2	51634	broad.mit.edu	37	X	129543515	129543515	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH8	50700	broad.mit.edu	37	19	10132321	10132321	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDX	5962	broad.mit.edu	37	11	110108242	110108242	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103193923	103193923	+	Silent	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RENBP	5973	broad.mit.edu	37	X	153205701	153205702	+	Intron	DNP	GG	AA	AA			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107075814	107075814	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS14	10636	broad.mit.edu	37	5	176799028	176799028	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHCE	6006	broad.mit.edu	37	1	25725549	25725549	+	Intron	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104671839	104671840	+	Intron	DNP	CC	AA	AA			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105261102	105261102	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE1	6035	broad.mit.edu	37	14	21269740	21269741	+	3'UTR	INS	-	ATAC	ATAC			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21790024	21790024	+	Silent	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPIA	22934	broad.mit.edu	37	2	88998120	88998120	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL3L	6123	broad.mit.edu	37	16	2000734	2000734	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRH	10692	broad.mit.edu	37	4	110757323	110757323	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60213093	60213093	+	Silent	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP2	122042	broad.mit.edu	37	13	32356798	32356798	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP3	51289	broad.mit.edu	37	5	33936760	33936760	+	5'UTR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38939038	38939038	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237893689	237893689	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237895400	237895400	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAAL1	113174	broad.mit.edu	37	11	18108622	18108622	+	Intron	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS2	9701	broad.mit.edu	37	22	50869524	50869524	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGB3A2	117156	broad.mit.edu	37	5	147261642	147261642	+	3'UTR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165986747	165986747	+	Silent	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3B	55800	broad.mit.edu	37	11	123524362	123524362	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167085307	167085307	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50292799	50292799	+	Intron	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71398284	71398284	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC14L3	266629	broad.mit.edu	37	22	30856245	30856245	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23IP	11196	broad.mit.edu	37	10	121691670	121691671	+	Nonsense_Mutation	DNP	GG	CT	CT			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELL	6402	broad.mit.edu	37	1	169660891	169660891	+	3'UTR	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3E	9723	broad.mit.edu	37	7	83016314	83016314	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4A	64218	broad.mit.edu	37	1	156130171	156130171	+	Intron	SNP	T	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122629675	122629675	+	Intron	DEL	G	-	-			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95090210	95090210	+	3'UTR	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB3	6317	broad.mit.edu	37	18	61323052	61323052	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI2	5276	broad.mit.edu	37	3	167183287	167183287	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42530189	42530189	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD5	55209	broad.mit.edu	37	3	9506104	9506104	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L2	26470	broad.mit.edu	37	16	29909285	29909285	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFI1	9814	broad.mit.edu	37	22	32011186	32011186	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155935668	155935668	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148431679	148431679	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOX2	6474	broad.mit.edu	37	3	157815836	157815836	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHQ1	55164	broad.mit.edu	37	3	72890283	72890283	+	Silent	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC14	100049587	broad.mit.edu	37	19	52152225	52152225	+	5'Flank	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPG	55423	broad.mit.edu	37	20	1617103	1617103	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164786792	164786792	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC11A2	4891	broad.mit.edu	37	12	51382191	51382191	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A9	56996	broad.mit.edu	37	7	100464250	100464250	+	3'UTR	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43224153	43224153	+	Intron	SNP	G	C	C	rs76167630	byFrequency;by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A6	9356	broad.mit.edu	37	11	62751813	62751813	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A16	8034	broad.mit.edu	37	10	70263487	70263487	+	Intron	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F4	341880	broad.mit.edu	37	14	58056241	58056241	+	Intron	DEL	G	-	-			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A3	126969	broad.mit.edu	37	1	95360466	95360466	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74452074	74452074	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74542253	74542253	+	5'Flank	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51865391	51865391	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A10P	386757	broad.mit.edu	37	16	32890877	32890877	+	Intron	DEL	C	-	-			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A10P	386757	broad.mit.edu	37	16	32894028	32894028	+	5'Flank	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A14	11254	broad.mit.edu	37	X	115582710	115582710	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110717279	110717279	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55731751	55731751	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170214166	170214166	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A8	23428	broad.mit.edu	37	14	23608613	23608613	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40656817	40656817	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70633341	70633341	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A2	6549	broad.mit.edu	37	2	103274287	103274287	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21370190	21370190	+	Missense_Mutation	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84454311	84454311	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84455094	84455094	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLMAP	7871	broad.mit.edu	37	3	57847886	57847886	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17877754	17877754	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMU1	55234	broad.mit.edu	37	9	33073725	33073725	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-19	767597	broad.mit.edu	37	14	101442783	101442783	+	5'Flank	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51314704	51314704	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1263060	1263060	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOCS5	9655	broad.mit.edu	37	2	46986062	46986062	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108459106	108459106	+	Frame_Shift_Del	DEL	C	-	-			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106924246	106924246	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX9	6662	broad.mit.edu	37	17	70120440	70120440	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP3	6670	broad.mit.edu	37	2	174820756	174820756	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP4	6671	broad.mit.edu	37	7	21470206	21470206	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG1	6674	broad.mit.edu	37	8	101206247	101206247	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	123850195	123850195	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE7P	441251	broad.mit.edu	37	7	72333533	72333533	+	RNA	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220354241	220354241	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK5	11005	broad.mit.edu	37	5	147499565	147499565	+	Intron	SNP	T	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55903664	55903664	+	5'Flank	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158636191	158636191	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158656379	158656380	+	5'UTR	DNP	GG	TC	TC			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9055137	9055137	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK2	6733	broad.mit.edu	37	7	104767464	104767464	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149475980	149475980	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149520961	149520961	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSRP1	6749	broad.mit.edu	37	11	57099813	57099813	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSTR4	6754	broad.mit.edu	37	20	23016165	23016165	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX6	280657	broad.mit.edu	37	X	47976315	47976315	+	Intron	SNP	T	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA6	338596	broad.mit.edu	37	10	17432489	17432489	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIM1	6786	broad.mit.edu	37	11	4103493	4103493	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STMN2	11075	broad.mit.edu	37	8	80567438	80567438	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX2	2054	broad.mit.edu	37	12	131285836	131285836	+	Splice_Site	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46311847	46311847	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75490673	75490673	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT10	341359	broad.mit.edu	37	12	33592511	33592511	+	5'UTR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR5	9038	broad.mit.edu	37	6	132910429	132910429	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC3	6866	broad.mit.edu	37	12	57407014	57407015	+	Intron	DNP	TG	CT	CT			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R19	259294	broad.mit.edu	37	12	11174543	11174543	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D15	64786	broad.mit.edu	37	12	72315330	72315330	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114841347	114841347	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139717340	139717340	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152082707	152082707	+	Silent	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEM5	284486	broad.mit.edu	37	1	151825794	151825794	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128134714	128134714	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98180606	98180606	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM2D2	83877	broad.mit.edu	37	8	38851131	38851131	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM4SF20	79853	broad.mit.edu	37	2	228243815	228243815	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMBIM6	7009	broad.mit.edu	37	12	50155472	50155472	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO4	255104	broad.mit.edu	37	1	20067529	20067529	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF1	8577	broad.mit.edu	37	9	103271243	103271243	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF2	23671	broad.mit.edu	37	2	193049172	193049172	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129566310	129566310	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129569309	129569309	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM135	65084	broad.mit.edu	37	11	86806456	86806456	+	Intron	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM154	201799	broad.mit.edu	37	4	153565758	153565758	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63C	57156	broad.mit.edu	37	14	77703169	77703169	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63C	57156	broad.mit.edu	37	14	77709294	77709294	+	Silent	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63C	57156	broad.mit.edu	37	14	77710631	77710631	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM69	51249	broad.mit.edu	37	1	46159007	46159007	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11B	132724	broad.mit.edu	37	4	69095238	69095238	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68699042	68699042	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68935729	68935729	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS4	56649	broad.mit.edu	37	11	117979478	117979478	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNPO3	23534	broad.mit.edu	37	7	128696197	128696197	+	5'Flank	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC18	84629	broad.mit.edu	37	7	5360180	5360180	+	Nonsense_Mutation	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578492	7578492	+	Nonsense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPRG1L	127262	broad.mit.edu	37	1	3542012	3542012	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55035198	55035198	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM60	166655	broad.mit.edu	37	4	165961743	165961743	+	Silent	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230650610	230650610	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC6	7225	broad.mit.edu	37	11	101353723	101353723	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45825878	45825878	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116427219	116427219	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142625439	142625439	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31767880	31767880	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC13	79573	broad.mit.edu	37	1	231052046	231052046	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7A	57217	broad.mit.edu	37	2	47251540	47251540	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80747670	80747670	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179429587	179429587	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179449825	179449825	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP5	114791	broad.mit.edu	37	15	22862760	22862760	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC16	57544	broad.mit.edu	37	14	52977860	52977860	+	Intron	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
T	6862	broad.mit.edu	37	6	166579969	166579969	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404398	34404398	+	RNA	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19444381	19444381	+	Missense_Mutation	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UFC1	51506	broad.mit.edu	37	1	161123809	161123809	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B28	54490	broad.mit.edu	37	4	70156378	70156378	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK4	54986	broad.mit.edu	37	3	41877535	41877535	+	Intron	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96222645	96222645	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP1	7398	broad.mit.edu	37	1	62913035	62913035	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	112210422	112210422	+	IGR	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38978071	38978071	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38990038	38990038	+	IGR	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	39006452	39006452	+	IGR	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42528030	42528030	+	IGR	DEL	G	-	-			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	60897731	60897731	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130417031	130417031	+	IGR	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48967555	48967555	+	IGR	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48970709	48970709	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49854669	49854669	+	IGR	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55783116	55783116	+	IGR	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94646155	94646155	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	107665221	107665221	+	IGR	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	108675072	108675072	+	IGR	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	129500347	129500347	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31900941	31900941	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	93518060	93518060	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	93709382	93709382	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19527030	19527030	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19956690	19956690	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	28552217	28552217	+	IGR	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	82264533	82264533	+	IGR	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	103840360	103840360	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20265152	20265152	+	IGR	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25736539	25736539	+	IGR	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20213638	20213639	+	IGR	DNP	GG	CT	CT			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20445774	20445774	+	IGR	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22465989	22465989	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22567281	22567281	+	IGR	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60165101	60165101	+	IGR	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20250405	20250405	+	IGR	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33424593	33424593	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52689229	52689229	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	61089353	61089353	+	IGR	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	66982585	66982585	+	IGR	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60214346	60214346	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15038539	15038539	+	IGR	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22793134	22793134	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	30528396	30528396	+	IGR	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158495401	158495401	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	199878421	199878421	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248605280	248605280	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248605286	248605286	+	IGR	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248605298	248605298	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	32833774	32833774	+	IGR	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11180870	11180870	+	IGR	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11180994	11180994	+	IGR	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	16130153	16130153	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16915153	16915153	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16920091	16920091	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27283615	27283615	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107092058	107092058	+	IGR	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132384120	132384120	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146584729	146584729	+	IGR	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	190795467	190795467	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194141474	194141474	+	IGR	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	226857822	226857822	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	41384325	41384325	+	IGR	DEL	G	-	-			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91795484	91795484	+	IGR	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91872724	91872724	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91924852	91924852	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91927298	91927298	+	IGR	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91944014	91944014	+	IGR	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	141539402	141539402	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	149700281	149700281	+	IGR	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180042013	180042013	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75377609	75377609	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88997534	88997534	+	IGR	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96387306	96387306	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	189660222	189660222	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	26113433	26113433	+	IGR	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69416377	69416377	+	IGR	DEL	C	-	-			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	75843177	75843177	+	IGR	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84761087	84761087	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97361588	97361588	+	IGR	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	113544488	113544488	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	32441077	32441077	+	IGR	SNP	A	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54350513	54350513	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	71875457	71875457	+	IGR	SNP	T	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	121874732	121874732	+	IGR	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	12893047	12893047	+	IGR	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	137982967	137982967	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143839612	143839612	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145280464	145280464	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145280468	145280468	+	IGR	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665432	56665432	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57076602	57076602	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62693376	62693376	+	IGR	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62693503	62693503	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65888670	65888670	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20743597	20743597	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	49297540	49297540	+	IGR	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7885694	7885694	+	IGR	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	21696145	21696145	+	IGR	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7477984	7477984	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141282493	141282493	+	IGR	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155215485	155215485	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64772205	64772205	+	IGR	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74546529	74546529	+	IGR	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPR2	7434	broad.mit.edu	37	7	158835748	158835748	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62174899	62174899	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61034797	61034797	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6130970	6130970	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70853322	70853322	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR33	55339	broad.mit.edu	37	2	128528312	128528312	+	Intron	SNP	A	G	G	rs71394693		TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167319802	167319802	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113082164	113082164	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR69	164781	broad.mit.edu	37	2	228769535	228769535	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37506958	37506958	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	993807	993807	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108618773	108618773	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31558933	31558933	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168115433	168115433	+	3'UTR	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YPEL5	51646	broad.mit.edu	37	2	30379480	30379480	+	Intron	SNP	C	G	G			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB47	92999	broad.mit.edu	37	3	42705455	42705455	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H7B	23264	broad.mit.edu	37	22	41716673	41716673	+	Silent	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC4H2	55906	broad.mit.edu	37	X	64139199	64139199	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC14	23174	broad.mit.edu	37	16	87447928	87447928	+	Intron	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31809806	31809806	+	Missense_Mutation	SNP	A	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77765131	77765131	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766327	77766327	+	Silent	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZKSCAN5	23660	broad.mit.edu	37	7	99110112	99110112	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM4	9202	broad.mit.edu	37	1	35847069	35847069	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND19	116225	broad.mit.edu	37	9	140482165	140482165	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF143	7702	broad.mit.edu	37	11	9534020	9534020	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22157392	22157392	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF227	7770	broad.mit.edu	37	19	44732552	44732552	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF235	9310	broad.mit.edu	37	19	44803895	44803895	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF323	64288	broad.mit.edu	37	6	28295326	28295326	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF335	63925	broad.mit.edu	37	20	44579020	44579020	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21552501	21552501	+	Silent	SNP	G	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF407	55628	broad.mit.edu	37	18	72346333	72346333	+	Nonsense_Mutation	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF496	84838	broad.mit.edu	37	1	247492178	247492179	+	Intron	DNP	CA	AG	AG			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31040159	31040159	+	Silent	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF547	284306	broad.mit.edu	37	19	57876262	57876262	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF765	91661	broad.mit.edu	37	19	53901370	53901370	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185801222	185801222	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF845	91664	broad.mit.edu	37	19	53855116	53855116	+	Silent	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZRANB3	84083	broad.mit.edu	37	2	136261918	136261918	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZXDC	79364	broad.mit.edu	37	3	126180752	126180752	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31298063	31298063	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22236934	22236934	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	12092123	12092123	+	5'Flank	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	190788352	190788352	+	Silent	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	203044006	203044006	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90249485	90249485	+	Intron	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24170402	24170402	+	Intron	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124116823	124116823	+	Silent	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142111227	142111227	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142168688	142168688	+	Intron	SNP	G	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142428990	142428991	+	Intron	DNP	CG	TT	TT			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142510407	142510407	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143140526	143140526	+	Intron	SNP	C	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	99583690	99583690	+	Intron	SNP	T	A	A			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84678679	84678679	+	5'Flank	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
