Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7382946	7382946	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA11P	79963	broad.mit.edu	37	4	419845	419845	+	3'UTR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48335273	48335273	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA7	10347	broad.mit.edu	37	19	1055931	1055931	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66880041	66880041	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169780148	169780148	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87074240	87074240	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48139179	48139179	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG2	9429	broad.mit.edu	37	4	89018658	89018658	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABRA	137735	broad.mit.edu	37	8	107782241	107782241	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35486404	35486404	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX2	8309	broad.mit.edu	37	3	58491031	58491031	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPP	55	broad.mit.edu	37	3	132063770	132063770	+	Splice_Site	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20554527	20554527	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20565059	20565059	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20566759	20566759	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL7A	10881	broad.mit.edu	37	9	111625427	111625427	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236881160	236881160	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT1	139741	broad.mit.edu	37	X	127185254	127185254	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVRL1	94	broad.mit.edu	37	12	52309232	52309232	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127797287	127797287	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM28	10863	broad.mit.edu	37	8	24168942	24168942	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106067196	106067196	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAR	103	broad.mit.edu	37	1	154570438	154570438	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7773210	7773210	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7789657	7789657	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY6	112	broad.mit.edu	37	12	49172026	49172026	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31124845	31124845	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70890466	70890466	+	3'UTR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH6	130	broad.mit.edu	37	4	100131611	100131611	+	Missense_Mutation	SNP	G	T	T	rs148378840	byFrequency	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AEN	64782	broad.mit.edu	37	15	89172685	89172685	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFM	173	broad.mit.edu	37	4	74364807	74364807	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT6	137964	broad.mit.edu	37	8	41469728	41469728	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109664984	109664984	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247051677	247051677	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHDC1	27245	broad.mit.edu	37	1	27876303	27876303	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105411259	105411259	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91708554	91708554	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243736348	243736348	+	Silent	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1L2	160428	broad.mit.edu	37	12	105428127	105428127	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH9A1	223	broad.mit.edu	37	1	165638193	165638193	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH5	54890	broad.mit.edu	37	17	18110315	18110315	+	Intron	DEL	G	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29450338	29450338	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMN1	196394	broad.mit.edu	37	12	31862270	31862270	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOT	154796	broad.mit.edu	37	X	112022779	112022779	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOT	154796	broad.mit.edu	37	X	112022947	112022947	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC1	64682	broad.mit.edu	37	2	112592044	112592044	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114274074	114274074	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114275674	114275674	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY2	57037	broad.mit.edu	37	7	16666776	16666776	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	73984548	73984548	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95599576	95599576	+	RNA	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14784420	14784420	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99188504	99188504	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101295475	101295475	+	5'UTR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO7	50636	broad.mit.edu	37	2	242128053	242128053	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32C	23520	broad.mit.edu	37	4	165118545	165118545	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201459946	201459946	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2A2	161	broad.mit.edu	37	11	985518	985518	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA1	320	broad.mit.edu	37	9	72055683	72055683	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21247745	21247745	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOH	350	broad.mit.edu	37	17	64216930	64216930	+	Intron	DEL	A	-	-	rs78195703		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP10	89872	broad.mit.edu	37	1	154295602	154295602	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP1	116985	broad.mit.edu	37	11	72491965	72491965	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36126541	36126541	+	Missense_Mutation	SNP	C	A	A	rs139641204		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF2	10564	broad.mit.edu	37	20	47604875	47604875	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFIP2	23647	broad.mit.edu	37	11	6499431	6499431	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP39	80728	broad.mit.edu	37	8	145773606	145773606	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC4	55130	broad.mit.edu	37	10	28228927	28228927	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRB2	409	broad.mit.edu	37	17	4623803	4623803	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3002690	3002690	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART3	419	broad.mit.edu	37	4	76956352	76956352	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101312109	101312109	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119737477	119737477	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASZ1	136991	broad.mit.edu	37	7	117024854	117024854	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF7IP	55729	broad.mit.edu	37	12	14577856	14577856	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2A	23130	broad.mit.edu	37	11	64676738	64676738	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B3	492	broad.mit.edu	37	X	152818719	152818719	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN2L	11273	broad.mit.edu	37	16	28842280	28842280	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11039408	11039408	+	3'UTR	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11098714	11098714	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAMBI	25805	broad.mit.edu	37	10	28970327	28970327	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	58786659	58786659	+	Silent	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1A	657	broad.mit.edu	37	10	88615066	88615068	+	Intron	DEL	CTC	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43318582	43318582	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC2	54796	broad.mit.edu	37	9	16552658	16552658	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112991863	112991863	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36959354	36959354	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140508693	140508693	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	80001181	80001181	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108011058	108011058	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100612591	100612591	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZW2	28969	broad.mit.edu	37	7	16745808	16745808	+	3'UTR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf118	55088	broad.mit.edu	37	10	115922587	115922587	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf81	79949	broad.mit.edu	37	10	115531801	115531801	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf63	79864	broad.mit.edu	37	11	122817133	122817133	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf35	55196	broad.mit.edu	37	12	32135455	32135455	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf59	120939	broad.mit.edu	37	12	10332293	10332293	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf23	80209	broad.mit.edu	37	13	39611495	39611495	+	5'UTR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf33	84935	broad.mit.edu	37	13	31480629	31480629	+	5'UTR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf44	81556	broad.mit.edu	37	15	65888217	65888217	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf44	81556	broad.mit.edu	37	15	65897427	65897427	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf78	123970	broad.mit.edu	37	16	49433159	49433159	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf102	400591	broad.mit.edu	37	17	32905960	32905960	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf28	283987	broad.mit.edu	37	17	72954520	72954520	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30672588	30672588	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf131	128061	broad.mit.edu	37	1	231376721	231376721	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf156	92342	broad.mit.edu	37	1	169762918	169762918	+	5'UTR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75037607	75037607	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75038256	75038256	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75039035	75039035	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf55	163859	broad.mit.edu	37	1	226186817	226186817	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf88	128344	broad.mit.edu	37	1	111889256	111889256	+	5'UTR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf27	54976	broad.mit.edu	37	20	3735196	3735196	+	Intron	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf25	128989	broad.mit.edu	37	22	20040902	20040902	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf53	339779	broad.mit.edu	37	2	27360020	27360020	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf38	153571	broad.mit.edu	37	5	2753496	2753496	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165715846	165715846	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf167	253714	broad.mit.edu	37	6	97677061	97677061	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf204	387119	broad.mit.edu	37	6	118822287	118822287	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40965093	40965093	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf26	79034	broad.mit.edu	37	7	6631427	6631427	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120906829	120906829	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf41	80185	broad.mit.edu	37	8	33370060	33370060	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53820830	53820830	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54913031	54913031	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG4	27092	broad.mit.edu	37	17	65014413	65014414	+	Intron	DNP	TC	CT	CT			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62501903	62501903	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27454796	27454796	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALN1	83698	broad.mit.edu	37	7	71275515	71275515	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1D	57118	broad.mit.edu	37	10	12870807	12870807	+	Missense_Mutation	SNP	C	T	T	rs148446769		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44281962	44281962	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44302698	44302698	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN10	11132	broad.mit.edu	37	2	241533296	241533296	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110497517	110497517	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ2	845	broad.mit.edu	37	1	116280740	116280740	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	121980463	121980463	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	122003473	122003473	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERB	79820	broad.mit.edu	37	14	92054295	92054295	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBFA2T2	9139	broad.mit.edu	37	20	32162056	32162056	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBFA2T2	9139	broad.mit.edu	37	20	32210932	32210932	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN3	643866	broad.mit.edu	37	14	24897532	24897532	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC113	29070	broad.mit.edu	37	16	58287831	58287831	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31683245	31683245	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC63	160762	broad.mit.edu	37	12	111318979	111318979	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32779857	32779857	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28605528	28605528	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC92	80212	broad.mit.edu	37	12	124428133	124428133	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL1	6346	broad.mit.edu	37	17	32690054	32690054	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6B	10693	broad.mit.edu	37	17	33256051	33256051	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT7	10574	broad.mit.edu	37	2	73476034	73476034	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158325207	158325207	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200R1	131450	broad.mit.edu	37	3	112666767	112666767	+	Intron	SNP	C	T	T	rs145811094		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD48	962	broad.mit.edu	37	1	160654959	160654959	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157803102	157803102	+	Missense_Mutation	SNP	G	T	T	rs74121552	byFrequency;by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD68	968	broad.mit.edu	37	17	7483066	7483066	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25C	995	broad.mit.edu	37	5	137664244	137664244	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65016031	65016031	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883275	21883275	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883649	21883649	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83711897	83711897	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19520818	19520818	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73498295	73498295	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH5	1003	broad.mit.edu	37	16	66429973	66429973	+	Missense_Mutation	SNP	G	A	A	rs139755397	byFrequency;by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK7	1022	broad.mit.edu	37	5	68557894	68557894	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR1	51816	broad.mit.edu	37	22	17680558	17680558	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34854503	34854503	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CERKL	375298	broad.mit.edu	37	2	182412284	182412284	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55844547	55844547	+	Silent	SNP	G	T	T	rs145477234		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55860280	55860280	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR2	3080	broad.mit.edu	37	1	196918575	196918575	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196644997	196644997	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CH25H	9023	broad.mit.edu	37	10	90966469	90966469	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50828428	50828428	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD2	1106	broad.mit.edu	37	15	93485296	93485296	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40045883	40045883	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIT1	1118	broad.mit.edu	37	1	203186156	203186156	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIT1	1118	broad.mit.edu	37	1	203194165	203194165	+	Intron	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM1	1128	broad.mit.edu	37	11	62677634	62677634	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136700873	136700873	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	240072465	240072465	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA7	1139	broad.mit.edu	37	15	32393544	32393544	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNG	1146	broad.mit.edu	37	2	233405028	233405028	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST9	83539	broad.mit.edu	37	18	24524215	24524215	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIDEA	1149	broad.mit.edu	37	18	12262964	12262964	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86900454	86900454	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143038936	143038936	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN4	1364	broad.mit.edu	37	7	73245828	73245828	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN7	1366	broad.mit.edu	37	17	7164150	7164150	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP2	7461	broad.mit.edu	37	7	73811540	73811540	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTC	1213	broad.mit.edu	37	17	57762458	57762458	+	Silent	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58619201	58619201	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74414570	74414570	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74414951	74414951	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	2777972	2777973	+	Frame_Shift_Ins	INS	-	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	2924927	2924927	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP1	8506	broad.mit.edu	37	17	40835871	40835871	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146817986	146817986	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146997243	146997243	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76350441	76350441	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125204494	125204494	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125521466	125521466	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125530543	125530543	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COASY	80347	broad.mit.edu	37	17	40716788	40716788	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103352680	103352680	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103428212	103428212	+	Silent	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103462546	103462546	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75839938	75839938	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121208880	121208880	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121267643	121267643	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32155450	32155450	+	Frame_Shift_Del	DEL	A	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL20A1	57642	broad.mit.edu	37	20	61929206	61929206	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139642888	139642888	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109738529	109738529	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48369668	48369668	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227912327	227912327	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107437736	107437736	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137630626	137630626	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189928079	189928079	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189951477	189951477	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238285757	238285757	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPB2	9276	broad.mit.edu	37	3	139096978	139096978	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPZ1	22818	broad.mit.edu	37	12	54737200	54737200	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB1	1360	broad.mit.edu	37	3	148559787	148559787	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB2	132864	broad.mit.edu	37	4	15063617	15063617	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE2	221184	broad.mit.edu	37	16	57144694	57144694	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPOX	1371	broad.mit.edu	37	3	98299562	98299563	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPVL	54504	broad.mit.edu	37	7	29111439	29111439	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIPAK	285464	broad.mit.edu	37	4	1389358	1389358	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGA	1418	broad.mit.edu	37	2	209025704	209025704	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSDE1	7812	broad.mit.edu	37	1	115282540	115282540	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34174722	34174722	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113241022	113241022	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113421123	113421123	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN1S1	1446	broad.mit.edu	37	4	70810648	70810648	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRNP3	80034	broad.mit.edu	37	2	166451702	166451702	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDP1	9150	broad.mit.edu	37	18	77464788	77464788	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA1	1495	broad.mit.edu	37	5	138253739	138253739	+	Intron	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11411693	11411693	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL1	8454	broad.mit.edu	37	7	148484115	148484115	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUZD1	50624	broad.mit.edu	37	10	124598650	124598650	+	Missense_Mutation	SNP	C	T	T	rs143659470		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC1	1538	broad.mit.edu	37	X	83128653	83128653	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC1	1538	broad.mit.edu	37	X	83129210	83129211	+	Missense_Mutation	DNP	CT	AC	AC			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2B7P1	1556	broad.mit.edu	37	19	41447305	41447306	+	Missense_Mutation	DNP	GA	TG	TG			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C19	1557	broad.mit.edu	37	10	96609917	96609917	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C19	1557	broad.mit.edu	37	10	96612442	96612442	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2F1	1572	broad.mit.edu	37	19	41622111	41622111	+	Silent	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A4	1576	broad.mit.edu	37	7	99375532	99375532	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F22	126410	broad.mit.edu	37	19	15648395	15648395	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72014709	72014709	+	3'UTR	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85969800	85969800	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAGLA	747	broad.mit.edu	37	11	61493400	61493400	+	Intron	SNP	C	T	T	rs140469647	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6652653	6652653	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36379738	36379738	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D4	23142	broad.mit.edu	37	4	52752827	52752827	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDHD2	23259	broad.mit.edu	37	8	38110569	38110569	+	Silent	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162724645	162724645	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162724952	162724952	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX3X	1654	broad.mit.edu	37	X	41203341	41203341	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX59	83479	broad.mit.edu	37	1	200628333	200628333	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB110	245913	broad.mit.edu	37	6	49977079	49977079	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB134	613211	broad.mit.edu	37	8	11851639	11851639	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX8	1659	broad.mit.edu	37	17	41561531	41561531	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DICER1	23405	broad.mit.edu	37	14	95562968	95562968	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	465069	465069	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3	22894	broad.mit.edu	37	13	73347793	73347793	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79576496	79576496	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79601669	79601669	+	Silent	SNP	C	A	A	rs138228867		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3534268	3534268	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124328213	124328213	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32398634	32398634	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118500202	118500202	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21901406	21901406	+	Intron	SNP	A	T	T	rs144553224	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7673701	7673701	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196618999	196618999	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38820518	38820518	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11700911	11700911	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC5G	285126	broad.mit.edu	37	2	27501140	27501140	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC6	9829	broad.mit.edu	37	1	65864448	65864448	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE1L3	1776	broad.mit.edu	37	3	58196464	58196464	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNPEP	23549	broad.mit.edu	37	2	220250827	220250827	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169129310	169129310	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169477428	169477429	+	Intron	DNP	GG	TT	TT			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154598648	154598648	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL4	10570	broad.mit.edu	37	10	134013942	134013942	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28612110	28612110	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56373386	56373386	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56482758	56482758	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBI3	10148	broad.mit.edu	37	19	4231316	4231316	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE2	9718	broad.mit.edu	37	3	183994878	183994878	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECM1	1893	broad.mit.edu	37	1	150482265	150482265	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDA2R	60401	broad.mit.edu	37	X	65824187	65824187	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1G	1937	broad.mit.edu	37	11	62327387	62327387	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	43926592	43926592	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55242489	55242489	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4A2	1974	broad.mit.edu	37	3	186504993	186504993	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELP2	55250	broad.mit.edu	37	18	33751061	33751061	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN2	84034	broad.mit.edu	37	18	2913094	2913094	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN3	90187	broad.mit.edu	37	20	39991656	39991656	+	Missense_Mutation	SNP	G	C	C	rs146469782		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR3	84658	broad.mit.edu	37	19	14758242	14758242	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP7	339221	broad.mit.edu	37	17	77709478	77709478	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD2	954	broad.mit.edu	37	9	139944560	139944560	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132551301	132551301	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46611573	46611573	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L2	2037	broad.mit.edu	37	6	131216229	131216229	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5434024	5434024	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	111938752	111938752	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	111970112	111970112	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA1	2041	broad.mit.edu	37	7	143097015	143097015	+	Silent	SNP	C	A	A	rs146631359	byFrequency	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89390204	89390204	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89391113	89391113	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142564038	142564038	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX2	2053	broad.mit.edu	37	8	27378492	27378492	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPN1	29924	broad.mit.edu	37	19	56206528	56206528	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103486936	103486936	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN2	10595	broad.mit.edu	37	16	23718184	23718184	+	Splice_Site	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERRFI1	54206	broad.mit.edu	37	1	8074129	8074129	+	Nonsense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI2B	2124	broad.mit.edu	37	17	29631504	29631504	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5L	115704	broad.mit.edu	37	19	7917924	7917924	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC8	149371	broad.mit.edu	37	1	231472329	231472329	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOSC4	54512	broad.mit.edu	37	8	145135259	145135259	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133849880	133849880	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11	2160	broad.mit.edu	37	4	187209002	187209002	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2	2147	broad.mit.edu	37	11	46740807	46740807	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107B	83641	broad.mit.edu	37	10	14563114	14563114	+	3'UTR	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139163668	139163668	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139278125	139278125	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM173B	134145	broad.mit.edu	37	5	10239183	10239183	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM180A	389558	broad.mit.edu	37	7	135418761	135418761	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM196A	642938	broad.mit.edu	37	10	128974033	128974033	+	Silent	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48A	55578	broad.mit.edu	37	13	37593535	37593535	+	Splice_Site	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43625106	43625106	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM86D	692099	broad.mit.edu	37	3	75476723	75476723	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187558005	187558005	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150920058	150920058	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150945458	150945458	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92532295	92532295	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127692897	127692897	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8160275	8160275	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL18	80028	broad.mit.edu	37	7	5540260	5540260	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL4	26235	broad.mit.edu	37	6	99353208	99353208	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15928432	15928432	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW7	55294	broad.mit.edu	37	4	153253847	153253847	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRLA	84824	broad.mit.edu	37	1	161681852	161681852	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FDXR	2232	broad.mit.edu	37	17	72858840	72858840	+	3'UTR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124975546	124975546	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125023004	125023004	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERD3L	222894	broad.mit.edu	37	7	19184913	19184913	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108516501	108516501	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FFAR3	2865	broad.mit.edu	37	19	35850521	35850521	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152329306	152329306	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152285620	152285620	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152285768	152285768	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ36000	284124	broad.mit.edu	37	17	21907107	21907107	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT3	2322	broad.mit.edu	37	13	28626770	28626770	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180046339	180046339	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3A	22862	broad.mit.edu	37	13	49771970	49771970	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXB2	442425	broad.mit.edu	37	9	79634849	79634849	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXG1	2290	broad.mit.edu	37	14	29237307	29237307	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXG1	2290	broad.mit.edu	37	14	29237327	29237327	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK1	221937	broad.mit.edu	37	7	4800592	4800592	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD6	122786	broad.mit.edu	37	14	52188791	52188791	+	Silent	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRRS1	391059	broad.mit.edu	37	1	100207832	100207832	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48512111	48512111	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRZB	2487	broad.mit.edu	37	2	183699728	183699728	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD2	123722	broad.mit.edu	37	15	83438669	83438669	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49190968	49190968	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39134992	39134992	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G3BP1	10146	broad.mit.edu	37	5	151170658	151170658	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABPA	2551	broad.mit.edu	37	21	27124258	27124258	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89899796	89899796	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADL1	339896	broad.mit.edu	37	3	30880603	30880603	+	Silent	SNP	C	A	A	rs148436135		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155099310	155099310	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155099313	155099313	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155158101	155158101	+	Silent	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA4	2626	broad.mit.edu	37	8	11606472	11606472	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP6	163351	broad.mit.edu	37	1	89849285	89849285	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120580432	120580432	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF15	9518	broad.mit.edu	37	19	18499157	18499157	+	Silent	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L2	89944	broad.mit.edu	37	11	134212620	134212620	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151234537	151234537	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG12	55970	broad.mit.edu	37	1	68173365	68173365	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPDA1	10007	broad.mit.edu	37	5	141385921	141385921	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPDA2	132789	broad.mit.edu	37	4	44719088	44719088	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133357344	133357344	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA6A	342096	broad.mit.edu	37	15	74373006	74373006	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA6D	653643	broad.mit.edu	37	15	75586718	75586718	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121411320	121411320	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167025164	167025165	+	Intron	DNP	CC	AA	AA			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC6	10082	broad.mit.edu	37	13	94197778	94197778	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR126	57211	broad.mit.edu	37	6	142736158	142736158	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154055989	154055989	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR161	23432	broad.mit.edu	37	1	168065747	168065747	+	Silent	SNP	T	A	A	rs28679686		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR50	9248	broad.mit.edu	37	X	150349228	150349228	+	Silent	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123471196	123471196	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB14	2888	broad.mit.edu	37	2	165365354	165365354	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHL1	29841	broad.mit.edu	37	2	10136041	10136041	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158142240	158142240	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA3	2892	broad.mit.edu	37	X	122537110	122537110	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120776196	120776196	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126746619	126746619	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GXYLT2	727936	broad.mit.edu	37	3	72978385	72978385	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	145040800	145040800	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HADHB	3032	broad.mit.edu	37	2	26507175	26507175	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HARS2	23438	broad.mit.edu	37	5	140073471	140073471	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS3	79441	broad.mit.edu	37	4	2240765	2240765	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN4	10021	broad.mit.edu	37	15	73617434	73617434	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240085557	240085557	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41055817	41055817	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELQ	113510	broad.mit.edu	37	4	84374799	84374799	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEY1	23462	broad.mit.edu	37	8	80679499	80679499	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIATL1	84641	broad.mit.edu	37	9	97177371	97177371	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIF1A	3091	broad.mit.edu	37	14	62199167	62199167	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HINT3	135114	broad.mit.edu	37	6	126298798	126298798	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1E	3008	broad.mit.edu	37	6	26156534	26156534	+	5'Flank	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2BF	440689	broad.mit.edu	37	1	149398967	149398967	+	RNA	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HM13	81502	broad.mit.edu	37	20	30137841	30137841	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMBS	3145	broad.mit.edu	37	11	118960402	118960402	+	Silent	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186022935	186022935	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186077635	186077635	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76456054	76456055	+	5'UTR	DNP	GC	TT	TT			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76475975	76475975	+	Intron	DEL	A	-	-	rs35317176		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46628225	46628225	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100995424	100995424	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HR	55806	broad.mit.edu	37	8	21978774	21978774	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS2ST1	9653	broad.mit.edu	37	1	87530232	87530232	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST3	266722	broad.mit.edu	37	13	97226845	97226845	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119962113	119962113	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSFX2	100130086	broad.mit.edu	37	X	148770668	148770668	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA7	3311	broad.mit.edu	37	1	161576686	161576686	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63256706	63256706	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63256880	63256880	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63256927	63256927	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR6	3362	broad.mit.edu	37	1	20005368	20005368	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYAL4	23553	broad.mit.edu	37	7	123516883	123516883	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS	3376	broad.mit.edu	37	9	95004351	95004351	+	Intron	DEL	G	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA14	3448	broad.mit.edu	37	9	21239471	21239471	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA14	3448	broad.mit.edu	37	9	21239473	21239473	+	Silent	SNP	C	T	T	rs150969341	byFrequency	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23383458	23383458	+	Missense_Mutation	SNP	G	T	T	rs149351958		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160485620	160485620	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF22	283284	broad.mit.edu	37	11	18738526	18738526	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117142563	117142563	+	Missense_Mutation	SNP	C	A	A	rs140588218		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL13RA2	3598	broad.mit.edu	37	X	114239721	114239721	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17B	27190	broad.mit.edu	37	5	148756541	148756541	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17RE	132014	broad.mit.edu	37	3	9952837	9952838	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RL2	8808	broad.mit.edu	37	2	102818106	102818106	+	Missense_Mutation	SNP	G	T	T	rs142080534		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL33	90865	broad.mit.edu	37	9	6252962	6252962	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166925881	166925881	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143081565	143081565	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPMK	253430	broad.mit.edu	37	10	59956367	59956367	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISX	91464	broad.mit.edu	37	22	35463074	35463074	+	5'UTR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITFG1	81533	broad.mit.edu	37	16	47196406	47196406	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52377468	52377468	+	Missense_Mutation	SNP	G	T	T	rs139705254		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15559257	15559257	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15760929	15760929	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54783745	54783745	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4821203	4821203	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33641319	33641319	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVNS1ABP	10625	broad.mit.edu	37	1	185269294	185269294	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124066000	124066000	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124398428	124398428	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KATNA1	11104	broad.mit.edu	37	6	149959680	149959680	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111146070	111146070	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111147160	111147160	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73849102	73849102	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND3	3752	broad.mit.edu	37	1	112524479	112524479	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63417159	63417159	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155555778	155555778	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ3	3786	broad.mit.edu	37	8	133182528	133182528	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNS2	3788	broad.mit.edu	37	8	99440308	99440308	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36721888	36721888	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD5	54442	broad.mit.edu	37	16	2757372	2757372	+	3'UTR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM1B	221656	broad.mit.edu	37	6	18207730	18207730	+	Silent	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0195	9772	broad.mit.edu	37	17	73467940	73467940	+	5'UTR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0319	9856	broad.mit.edu	37	6	24566863	24566863	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27751301	27751301	+	Intron	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1244	57221	broad.mit.edu	37	6	138629992	138629992	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324	57535	broad.mit.edu	37	1	109743374	109743374	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94088672	94088672	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94120073	94120073	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94120084	94120084	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1468	57614	broad.mit.edu	37	18	59855222	59855222	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1468	57614	broad.mit.edu	37	18	59888679	59888679	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100090445	100090445	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1644	85352	broad.mit.edu	37	22	44645613	44645613	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF14	9928	broad.mit.edu	37	1	200569251	200569251	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39720008	39720008	+	Intron	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245849484	245849484	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51902186	51902187	+	Frame_Shift_Ins	INS	-	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158064446	158064446	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70370930	70370930	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL38	340359	broad.mit.edu	37	8	124664263	124664263	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86890577	86890578	+	Frame_Shift_Ins	INS	-	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK13	26085	broad.mit.edu	37	19	51560016	51560016	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152733428	152733428	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT38	8687	broad.mit.edu	37	17	39594374	39594374	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6A	3853	broad.mit.edu	37	12	52883764	52883764	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT73	319101	broad.mit.edu	37	12	53002076	53002077	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT82	3888	broad.mit.edu	37	12	52799698	52799698	+	Nonsense_Mutation	SNP	C	A	A	rs145722634		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-2	337959	broad.mit.edu	37	21	31744512	31744512	+	Missense_Mutation	SNP	G	T	T	rs143324515	byFrequency	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-3	85290	broad.mit.edu	37	17	39324300	39324300	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651136	1651136	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651191	1651199	+	In_Frame_Del	DEL	GGCTGTGGA	-	-	rs144216147		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAG3	3902	broad.mit.edu	37	12	6882248	6882248	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60921986	60921986	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAPTM5	7805	broad.mit.edu	37	1	31206807	31206807	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP4	113251	broad.mit.edu	37	12	50829370	50829370	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2B	26239	broad.mit.edu	37	1	152659518	152659518	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16513545	16513545	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66075681	66075681	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48654415	48654415	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPF	8513	broad.mit.edu	37	10	90438386	90438386	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPN	643418	broad.mit.edu	37	10	90526198	90526198	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1A	4009	broad.mit.edu	37	1	165182967	165182967	+	Missense_Mutation	SNP	G	T	T	rs149908681		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148193697	148193697	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC400759	400759	broad.mit.edu	37	1	89889745	89889745	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728855	728855	broad.mit.edu	37	1	149648198	149648198	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728989	728989	broad.mit.edu	37	1	146516045	146516045	+	5'Flank	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161012107	161012107	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	81893015	81893015	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	81969103	81969103	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82416656	82416656	+	Intron	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82456781	82456781	+	Silent	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62845511	62845511	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62862036	62862036	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62894601	62894601	+	Splice_Site	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG3	121227	broad.mit.edu	37	12	59274658	59274658	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141083415	141083415	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141232702	141232702	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	169985444	169985444	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170097559	170097559	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP5	4041	broad.mit.edu	37	11	68183797	68183797	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP8	7804	broad.mit.edu	37	1	53728281	53728281	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40136810	40136810	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33488323	33488323	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUM	4060	broad.mit.edu	37	12	91497992	91497992	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160735892	160735892	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160765919	160765919	+	5'Flank	SNP	C	A	A	rs113865465		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD1L1	8379	broad.mit.edu	37	7	2041803	2041803	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD2L1BP	9587	broad.mit.edu	37	6	43604373	43604375	+	In_Frame_Del	DEL	CTT	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA11	4110	broad.mit.edu	37	X	148798362	148798362	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA12	4111	broad.mit.edu	37	X	151900601	151900601	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140983288	140983288	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2C1	4123	broad.mit.edu	37	15	75654347	75654347	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164854263	164854263	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164854265	164854265	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2L	23263	broad.mit.edu	37	13	113718714	113718714	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138696968	138696968	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138724720	138724720	+	5'UTR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA1	266727	broad.mit.edu	37	6	37622484	37622484	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDH1B	130752	broad.mit.edu	37	2	207619756	207619756	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90361967	90361967	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151102898	151102898	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126769092	126769092	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIG1	644890	broad.mit.edu	37	10	15008412	15008412	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS3P1	4213	broad.mit.edu	37	17	15690727	15690727	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MET	4233	broad.mit.edu	37	7	116339431	116339431	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP1	4236	broad.mit.edu	37	15	44097385	44097385	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5	4249	broad.mit.edu	37	2	135075046	135075046	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGST2	4258	broad.mit.edu	37	4	140624700	140624700	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR887	100126347	broad.mit.edu	37	5	15935347	15935347	+	RNA	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLH1	4292	broad.mit.edu	37	3	37038135	37038135	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168281294	168281294	+	Intron	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP11	4320	broad.mit.edu	37	22	24124381	24124381	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90848858	90848858	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4	10934	broad.mit.edu	37	4	174537899	174537899	+	5'Flank	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH10	10199	broad.mit.edu	37	2	71361141	71361141	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL21	219927	broad.mit.edu	37	11	68668125	68668125	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60233781	60233781	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1R	4486	broad.mit.edu	37	3	49928939	49928939	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTCP1NB	100272147	broad.mit.edu	37	X	154290188	154290188	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFR	4524	broad.mit.edu	37	1	11854623	11854623	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63444307	63444307	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29599371	29599371	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9019982	9019982	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9064859	9064859	+	Silent	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9065531	9065531	+	Silent	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100676084	100676084	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100684682	100684682	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100684721	100684721	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1271325	1271325	+	Silent	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49412407	49412407	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF5	4617	broad.mit.edu	37	12	81112085	81112085	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10348286	10348286	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23851835	23851835	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23884825	23884825	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10303865	10303865	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171034881	171034881	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171243919	171243919	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128322930	128322930	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128346079	128346079	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9B	4650	broad.mit.edu	37	19	17212808	17212808	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MZF1	7593	broad.mit.edu	37	19	59080697	59080697	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NACA	4666	broad.mit.edu	37	12	57109568	57109568	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NACA	4666	broad.mit.edu	37	12	57110843	57110843	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101795334	101795334	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARF	26502	broad.mit.edu	37	17	80436675	80436675	+	Splice_Site	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV1	89796	broad.mit.edu	37	1	201750344	201750344	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78400193	78400193	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBN	4683	broad.mit.edu	37	8	90982841	90982841	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF7	343505	broad.mit.edu	37	1	120384922	120384922	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144520730	144520730	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144619343	144619343	+	Intron	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG	64151	broad.mit.edu	37	4	17814136	17814136	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133541158	133541158	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA1	8648	broad.mit.edu	37	2	24929509	24929509	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124817745	124817745	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124824809	124824809	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	119145679	119145679	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD4L	23327	broad.mit.edu	37	18	56033381	56033381	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27256240	27256240	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK2	4751	broad.mit.edu	37	1	211848791	211848791	+	Silent	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK4	6787	broad.mit.edu	37	3	52802407	52802407	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73552647	73552647	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NES	10763	broad.mit.edu	37	1	156642540	156642540	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEUROG2	63973	broad.mit.edu	37	4	113436287	113436287	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204985517	204985517	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIC	4782	broad.mit.edu	37	19	3433537	3433537	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFX1	4799	broad.mit.edu	37	9	33307152	33307152	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGDN	25983	broad.mit.edu	37	14	23945502	23945502	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEJ1	79840	broad.mit.edu	37	2	219942058	219942058	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHLRC3	387921	broad.mit.edu	37	13	39616394	39616394	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52505683	52505683	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	125144412	125144412	+	3'UTR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63831127	63831127	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC5	84166	broad.mit.edu	37	16	57076012	57076012	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56424218	56424218	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56363306	56363306	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOMO2	283820	broad.mit.edu	37	16	18543048	18543048	+	Intron	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26116039	26116039	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS3	4846	broad.mit.edu	37	7	150703475	150703475	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOVA1	4857	broad.mit.edu	37	14	26917372	26917372	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69320713	69320713	+	Intron	SNP	C	A	A	rs148086918	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69328113	69328113	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPBWR1	2831	broad.mit.edu	37	8	53853210	53853210	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34888198	34888198	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY5R	4889	broad.mit.edu	37	4	164271912	164271912	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY	4852	broad.mit.edu	37	7	24329252	24329252	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115374006	115374006	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP1	8829	broad.mit.edu	37	10	33475483	33475483	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50149280	50149280	+	Silent	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C1A	84618	broad.mit.edu	37	1	40131791	40131791	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C1B	93034	broad.mit.edu	37	2	18766474	18766474	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP133	55746	broad.mit.edu	37	1	229593873	229593873	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134103703	134103703	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP62	23636	broad.mit.edu	37	19	50411625	50411625	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP85	79902	broad.mit.edu	37	17	73229160	73229160	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102339862	102339862	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102343728	102343728	+	Intron	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183522218	183522218	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50944420	50944420	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G8	219869	broad.mit.edu	37	11	123900397	123900397	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K1	391109	broad.mit.edu	37	1	158435390	158435390	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158389847	158389847	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10V1	390201	broad.mit.edu	37	11	59481191	59481191	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H4	390442	broad.mit.edu	37	14	20711524	20711524	+	Missense_Mutation	SNP	G	T	T	rs142588807	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14A16	284532	broad.mit.edu	37	1	247978993	247978993	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1S2	219958	broad.mit.edu	37	11	57970951	57970951	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A5	393046	broad.mit.edu	37	7	143748389	143748389	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B3	442184	broad.mit.edu	37	6	29054770	29054770	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2J2	26707	broad.mit.edu	37	6	29142069	29142069	+	Nonsense_Mutation	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248166970	248166970	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248167153	248167153	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248167323	248167323	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248263100	248263100	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L1P	26247	broad.mit.edu	37	1	248153623	248153623	+	5'UTR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248202135	248202135	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M1P	388762	broad.mit.edu	37	1	248285550	248285550	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248367167	248367167	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55433224	55433224	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55433583	55433583	+	3'UTR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K14	122740	broad.mit.edu	37	14	20482705	20482705	+	Silent	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K17	390436	broad.mit.edu	37	14	20586056	20586056	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20295661	20295661	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22332768	22332768	+	5'UTR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22333131	22333131	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N5	390437	broad.mit.edu	37	14	20612048	20612048	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51A7	119687	broad.mit.edu	37	11	4929527	4929527	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51I1	390063	broad.mit.edu	37	11	5462206	5462206	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51L1	119682	broad.mit.edu	37	11	5021145	5021145	+	Silent	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52A5	390054	broad.mit.edu	37	11	5152927	5152927	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52K2	119774	broad.mit.edu	37	11	4470602	4470602	+	Silent	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A3	390083	broad.mit.edu	37	11	5969356	5969356	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D13	390142	broad.mit.edu	37	11	55541472	55541472	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5I1	10798	broad.mit.edu	37	11	55703126	55703126	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5J2	282775	broad.mit.edu	37	11	55944722	55944722	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T1	390155	broad.mit.edu	37	11	56043396	56043397	+	Missense_Mutation	DNP	GG	TT	TT	rs113612396	byFrequency	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N1	128372	broad.mit.edu	37	1	158736362	158736362	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N1	128372	broad.mit.edu	37	1	158736501	158736501	+	5'Flank	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6X1	390260	broad.mit.edu	37	11	123625330	123625330	+	5'Flank	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8G2	26492	broad.mit.edu	37	11	124095992	124095992	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H3	390152	broad.mit.edu	37	11	55890084	55890084	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC3L	23595	broad.mit.edu	37	6	88318756	88318756	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC5L	5001	broad.mit.edu	37	7	103767298	103767298	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC6L	23594	broad.mit.edu	37	16	46729468	46729468	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL6	114880	broad.mit.edu	37	2	179255873	179255873	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29648274	29648274	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXSR1	9943	broad.mit.edu	37	3	38293721	38293721	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY10	27334	broad.mit.edu	37	X	78216858	78216859	+	Missense_Mutation	DNP	CG	GA	GA			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY12	64805	broad.mit.edu	37	3	151055929	151055929	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P704P	641455	broad.mit.edu	37	14	20020050	20020050	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17566290	17566290	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9624939	9624939	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176668531	176668531	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25446604	25446604	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP14	54625	broad.mit.edu	37	3	122432421	122432421	+	Splice_Site	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP1	142	broad.mit.edu	37	1	226570958	226570958	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP2	10038	broad.mit.edu	37	14	20820432	20820432	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATZ1	23598	broad.mit.edu	37	22	31740992	31740992	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBLD	64081	broad.mit.edu	37	10	70048269	70048269	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91133849	91133849	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91134054	91134054	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55569195	55569195	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55600099	55600099	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55782676	55782676	+	Silent	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH18	54510	broad.mit.edu	37	4	138451195	138451195	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140250613	140250613	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140167035	140167035	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140168079	140168079	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA4	56144	broad.mit.edu	37	5	140188946	140188946	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB5	26167	broad.mit.edu	37	5	140515678	140515678	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB5	26167	broad.mit.edu	37	5	140515852	140515852	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB6	56130	broad.mit.edu	37	5	140531098	140531098	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCF11	51585	broad.mit.edu	37	11	82893518	82893518	+	Silent	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82785355	82785355	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165989971	165989971	+	5'UTR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144865934	144865935	+	Intron	DNP	CC	AA	AA			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4D	5144	broad.mit.edu	37	5	58271612	58271612	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6C	5146	broad.mit.edu	37	10	95389010	95389010	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55155069	55155069	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20380924	20380924	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32073957	32073957	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER1	5187	broad.mit.edu	37	17	8047130	8047130	+	Silent	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKM	5213	broad.mit.edu	37	12	48525021	48525021	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGRMC2	10424	broad.mit.edu	37	4	129192459	129192460	+	3'UTR	DNP	TG	AA	AA			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20	51230	broad.mit.edu	37	20	34435389	34435389	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98412421	98412421	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C3	5289	broad.mit.edu	37	18	39570474	39570474	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209169637	209169637	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITX2	5308	broad.mit.edu	37	4	111554084	111554084	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51907900	51907900	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN1	5585	broad.mit.edu	37	19	14578650	14578650	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125268013	125268013	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	33021742	33021742	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAT	5327	broad.mit.edu	37	8	42050582	42050582	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB2	5330	broad.mit.edu	37	15	40585908	40585908	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9459604	9459604	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	95993841	95993841	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131948375	131948375	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132110108	132110108	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM1P	440456	broad.mit.edu	37	17	62796792	62796792	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161135904	161135904	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLN	5350	broad.mit.edu	37	6	118880304	118880304	+	3'UTR	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131815418	131815418	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131866996	131866996	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L11	441263	broad.mit.edu	37	7	76631612	76631612	+	RNA	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118196236	118196236	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA1	285848	broad.mit.edu	37	6	36269754	36269754	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84561380	84561380	+	Intron	DEL	T	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD2	5425	broad.mit.edu	37	7	44154838	44154838	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121208671	121208671	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53103646	53103646	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38153086	38153086	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38158809	38158809	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19553587	19553587	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19566058	19566058	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19566169	19566169	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23816048	23816048	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149216164	149216164	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149216724	149216724	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3B	79660	broad.mit.edu	37	8	8998956	8998956	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2A	5520	broad.mit.edu	37	8	26151302	26151302	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146086384	146086384	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF1	65121	broad.mit.edu	37	1	12853572	12853572	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23526942	23526942	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69104797	69104797	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKACB	5567	broad.mit.edu	37	1	84650823	84650823	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROL1	58503	broad.mit.edu	37	4	71275358	71275358	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRT1	80863	broad.mit.edu	37	6	32116988	32116988	+	3'UTR	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142459541	142459541	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142459766	142459766	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS38	339501	broad.mit.edu	37	1	228004907	228004907	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS53	339105	broad.mit.edu	37	16	31097227	31097230	+	Intron	DEL	CTAA	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSEN2	5664	broad.mit.edu	37	1	227081775	227081775	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43352057	43352057	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43679578	43679578	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43523270	43523270	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43576960	43576960	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCH2	8643	broad.mit.edu	37	1	45293036	45293036	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11589657	11589657	+	Missense_Mutation	SNP	G	A	A	rs12096312		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71512593	71512593	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209315480	209315480	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK7	5754	broad.mit.edu	37	6	43126749	43126749	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK7	5754	broad.mit.edu	37	6	43128366	43128366	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87689140	87689140	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN4	5775	broad.mit.edu	37	2	120714508	120714508	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN6	5777	broad.mit.edu	37	12	7064898	7064898	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70954551	70954551	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70960398	70960398	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	71029809	71029809	+	Silent	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8319768	8319768	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55711935	55711935	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128411251	128411251	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRS	5802	broad.mit.edu	37	19	5215197	5215197	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121568130	121568130	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52366151	52366151	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1653320	1653320	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB38	23682	broad.mit.edu	37	11	87847049	87847049	+	3'UTR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3IP	117177	broad.mit.edu	37	12	70209151	70209151	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABL2A	11159	broad.mit.edu	37	2	114391843	114391843	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RADIL	55698	broad.mit.edu	37	7	4856039	4856039	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP17	64901	broad.mit.edu	37	5	170305251	170305251	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP4	5928	broad.mit.edu	37	1	33133872	33133872	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBL1	5933	broad.mit.edu	37	20	35695054	35695054	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM26	64062	broad.mit.edu	37	13	79928561	79928561	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM4	5936	broad.mit.edu	37	11	66411619	66411619	+	3'UTR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMX2	51634	broad.mit.edu	37	X	129537746	129537746	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBX1	9978	broad.mit.edu	37	22	41347408	41347408	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCC2	55920	broad.mit.edu	37	1	17736577	17736577	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103338560	103338560	+	Intron	DEL	G	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8424286	8424286	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8684419	8684419	+	Missense_Mutation	SNP	G	A	A	rs142952294	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REXO4	57109	broad.mit.edu	37	9	136276070	136276070	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72932395	72932395	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS8	85397	broad.mit.edu	37	1	182635138	182635138	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49582494	49582494	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDF2	79651	broad.mit.edu	37	17	74473863	74473863	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOXF2B	727940	broad.mit.edu	37	X	119293138	119293138	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130963548	130963548	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104987714	104987715	+	Frame_Shift_Ins	INS	-	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLN2	6019	broad.mit.edu	37	9	5304603	5304603	+	5'Flank	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEL	6041	broad.mit.edu	37	1	182554909	182554909	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF145	153830	broad.mit.edu	37	5	158595822	158595822	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25341431	25341431	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25399700	25399700	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNMT	8731	broad.mit.edu	37	18	13731883	13731883	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROD1	9991	broad.mit.edu	37	9	115060049	115060049	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROGDI	79641	broad.mit.edu	37	16	4847789	4847789	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10465553	10465553	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55541388	55541388	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68912605	68912605	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL10L	140801	broad.mit.edu	37	14	47120967	47120967	+	5'UTR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL14	9045	broad.mit.edu	37	3	40503438	40503438	+	Silent	SNP	A	G	G	rs145518013		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL5	6125	broad.mit.edu	37	1	93306043	93306043	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPN2	6185	broad.mit.edu	37	20	35826893	35826893	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RQCD1	9125	broad.mit.edu	37	2	219458847	219458847	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93026711	93026711	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX2	860	broad.mit.edu	37	6	45399574	45399574	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP3	51289	broad.mit.edu	37	5	33937275	33937275	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP3	51289	broad.mit.edu	37	5	33938220	33938220	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39002871	39002871	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237620007	237620007	+	Silent	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237664013	237664013	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237806676	237806676	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237817625	237817625	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237896933	237896933	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237941962	237941962	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33873611	33873611	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100P	6286	broad.mit.edu	37	4	6695620	6695620	+	5'UTR	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51171014	51171014	+	3'UTR	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92731109	92731109	+	Silent	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50902833	50902833	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML2	10389	broad.mit.edu	37	X	18338426	18338426	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML4	256380	broad.mit.edu	37	6	108042097	108042097	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38760296	38760296	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38936142	38936142	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165987815	165987815	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE1	80274	broad.mit.edu	37	22	43625262	43625262	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCYL2	55681	broad.mit.edu	37	12	100728058	100728058	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCYL2	55681	broad.mit.edu	37	12	100732925	100732925	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDR16C5	195814	broad.mit.edu	37	8	57218027	57218027	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31B	25956	broad.mit.edu	37	10	102249088	102249088	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SECISBP2	79048	broad.mit.edu	37	9	91940394	91940394	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L3	23231	broad.mit.edu	37	4	25823605	25823605	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L	6400	broad.mit.edu	37	14	81965717	81965717	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA7A	8482	broad.mit.edu	37	15	74709697	74709697	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA7A	8482	broad.mit.edu	37	15	74709982	74709982	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT11	55752	broad.mit.edu	37	4	77926987	77926987	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT8	23176	broad.mit.edu	37	5	132097248	132097248	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERINC2	347735	broad.mit.edu	37	1	31898241	31898241	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERINC5	256987	broad.mit.edu	37	5	79473158	79473158	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB8	5271	broad.mit.edu	37	18	61645624	61645624	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD5	55209	broad.mit.edu	37	3	9475768	9475768	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETDB1	9869	broad.mit.edu	37	1	150936752	150936752	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L2	26470	broad.mit.edu	37	16	29907150	29907150	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7247935	7247935	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRP4	6424	broad.mit.edu	37	7	37946949	37946949	+	3'UTR	SNP	G	T	T	rs62446002	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS16	11129	broad.mit.edu	37	19	45571859	45571859	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGOL2	151246	broad.mit.edu	37	2	201436413	201436413	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP5	9467	broad.mit.edu	37	3	15311335	15311335	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC2	25759	broad.mit.edu	37	19	440980	440980	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC5	8778	broad.mit.edu	37	19	52132731	52132731	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC6	946	broad.mit.edu	37	19	52033926	52033926	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIX5	147912	broad.mit.edu	37	19	46270388	46270388	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164760753	164760753	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC11A1	6556	broad.mit.edu	37	2	219256057	219256058	+	Intron	DNP	CC	AA	AA			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56920205	56920205	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A6	9990	broad.mit.edu	37	15	34542848	34542848	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122787429	122787429	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A2	9058	broad.mit.edu	37	17	26821004	26821004	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A1	6563	broad.mit.edu	37	18	43310394	43310395	+	Missense_Mutation	DNP	TA	CT	CT			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A2	6506	broad.mit.edu	37	11	35395908	35395908	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A16	85413	broad.mit.edu	37	6	110746219	110746219	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A7	10864	broad.mit.edu	37	6	43267156	43267156	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A3	1811	broad.mit.edu	37	7	107427257	107427257	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103015135	103015135	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92307685	92307685	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92346639	92346639	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92352516	92352516	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A3	11000	broad.mit.edu	37	1	153747848	153747848	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B1	10237	broad.mit.edu	37	17	47778717	47778717	+	3'UTR	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75708813	75708813	+	Intron	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A1	50651	broad.mit.edu	37	1	8390452	8390452	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162751275	162751275	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A9	83697	broad.mit.edu	37	5	139745219	139745219	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A10P	386757	broad.mit.edu	37	16	32893958	32893958	+	5'Flank	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85266824	85266824	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85285811	85285811	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55703372	55703372	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55730144	55730144	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A3	6531	broad.mit.edu	37	5	1414769	1414769	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A4	389015	broad.mit.edu	37	2	103120017	103120017	+	Silent	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20619120	20619120	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144905684	144905684	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK4	139065	broad.mit.edu	37	X	142716539	142716539	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88327942	88327943	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAP2	64744	broad.mit.edu	37	1	40882385	40882385	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD1	6609	broad.mit.edu	37	11	6414414	6414414	+	Intron	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAI2	6591	broad.mit.edu	37	8	49832731	49832731	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNCAIP	9627	broad.mit.edu	37	5	121726747	121726747	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD113-9	767569	broad.mit.edu	37	14	101412023	101412024	+	RNA	DNP	GG	TT	TT			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25312894	25312894	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPC	6631	broad.mit.edu	37	6	34725633	34725633	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNW1	22938	broad.mit.edu	37	14	78189634	78189634	+	Intron	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX31	169166	broad.mit.edu	37	8	101601149	101601149	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOBP	55084	broad.mit.edu	37	6	107955303	107955303	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SON	6651	broad.mit.edu	37	21	34923232	34923232	+	Silent	SNP	G	T	T	rs146602176		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS1	10580	broad.mit.edu	37	10	97144023	97144023	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108489838	108489838	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX10	6663	broad.mit.edu	37	22	38369875	38369876	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140L	93349	broad.mit.edu	37	2	231222756	231222756	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN1	494118	broad.mit.edu	37	X	144337221	144337221	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA6	54558	broad.mit.edu	37	1	48860919	48860919	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYC	387778	broad.mit.edu	37	11	64940419	64940419	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEM1	374768	broad.mit.edu	37	17	7324723	7324723	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG7	6687	broad.mit.edu	37	16	89612990	89612990	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPNS3	201305	broad.mit.edu	37	17	4349456	4349456	+	Silent	SNP	C	T	T	rs146044768		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55910469	55910469	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2B	6701	broad.mit.edu	37	1	153043164	153043164	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158592861	158592861	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158622476	158622476	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64502733	64502733	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149483226	149483226	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107459724	107459724	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG2	10735	broad.mit.edu	37	X	123215182	123215182	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD13	90627	broad.mit.edu	37	13	33739517	33739517	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT5B	6777	broad.mit.edu	37	17	40359680	40359680	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STBD1	8987	broad.mit.edu	37	4	77231140	77231140	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIM2	57620	broad.mit.edu	37	4	27019384	27019384	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK38L	23012	broad.mit.edu	37	12	27470173	27470173	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK4	6789	broad.mit.edu	37	20	43623806	43623806	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRC	161497	broad.mit.edu	37	15	43901484	43901484	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUFU	51684	broad.mit.edu	37	10	104377247	104377247	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT6H	6830	broad.mit.edu	37	17	27000440	27000440	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2B	9899	broad.mit.edu	37	15	91835638	91835638	+	Silent	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113312459	113312459	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152466647	152466647	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152527394	152527394	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152748945	152748945	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152774700	152774700	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64516501	64516501	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL4	94121	broad.mit.edu	37	X	99944996	99944998	+	Intron	DEL	TTC	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123844295	123844295	+	Silent	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK3	51347	broad.mit.edu	37	12	118671547	118671547	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS1R1	80835	broad.mit.edu	37	1	6636489	6636489	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS1R2	80834	broad.mit.edu	37	1	19167002	19167002	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R41	259287	broad.mit.edu	37	7	143175790	143175790	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115117548	115117548	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114803965	114803965	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114803991	114803991	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139661722	139661722	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEAL3	85012	broad.mit.edu	37	X	102864488	102864488	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEAL6	158931	broad.mit.edu	37	X	101395808	101395808	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB3B	51224	broad.mit.edu	37	18	44561625	44561625	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDP1	55775	broad.mit.edu	37	14	90429941	90429942	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD3	81550	broad.mit.edu	37	13	61059946	61059946	+	Missense_Mutation	SNP	A	G	G	rs17855091		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD9	122402	broad.mit.edu	37	14	104508469	104508469	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151748189	151748189	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TES	26136	broad.mit.edu	37	7	115857786	115857786	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX11	56159	broad.mit.edu	37	X	69828958	69828958	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56738345	56738345	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30701025	30701025	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFR2	7036	broad.mit.edu	37	7	100231030	100231030	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBI	7045	broad.mit.edu	37	5	135390519	135390519	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169637732	169637732	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS4	7060	broad.mit.edu	37	5	79378216	79378216	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRAP3	9967	broad.mit.edu	37	1	36759490	36759490	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137928454	137928454	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164394505	164394505	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166964396	166964396	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	167021825	167021825	+	Intron	SNP	G	A	A	rs113057991		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR10	81793	broad.mit.edu	37	4	38777210	38777210	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120475175	120475175	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120476002	120476002	+	Missense_Mutation	SNP	C	A	A	rs34953464		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF4	81501	broad.mit.edu	37	8	105361289	105361289	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC5	79838	broad.mit.edu	37	16	19475097	19475097	+	Splice_Site	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO1	54499	broad.mit.edu	37	1	165788762	165788762	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED6	146456	broad.mit.edu	37	16	69377433	69377433	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF2	23671	broad.mit.edu	37	2	192863879	192863879	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF2	23671	broad.mit.edu	37	2	193059059	193059059	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM108	66000	broad.mit.edu	37	3	133100012	133100012	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM149	79713	broad.mit.edu	37	19	36230816	36230816	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM155	132332	broad.mit.edu	37	4	122682991	122682991	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM161A	54929	broad.mit.edu	37	19	19232527	19232527	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM175	84286	broad.mit.edu	37	4	952220	952220	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM18	129787	broad.mit.edu	37	2	675509	675509	+	Splice_Site	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15433927	15433927	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM40	55287	broad.mit.edu	37	3	12779900	12779900	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM49	81671	broad.mit.edu	37	17	57917156	57917156	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM59L	25789	broad.mit.edu	37	19	18729267	18729267	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM8C	389827	broad.mit.edu	37	9	136384029	136384029	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM97	27346	broad.mit.edu	37	17	26652401	26652401	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68688290	68688290	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68929046	68929046	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68934315	68934315	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS13	84000	broad.mit.edu	37	11	117787940	117787940	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS9	360200	broad.mit.edu	37	19	2410317	2410317	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF4	7293	broad.mit.edu	37	1	1148426	1148426	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74801830	74801830	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74929264	74929264	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNPO1	3842	broad.mit.edu	37	5	72201204	72201204	+	Silent	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6A	27327	broad.mit.edu	37	16	24820838	24820838	+	Intron	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578290	7578290	+	Splice_Site	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578457	7578457	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPD52L3	89882	broad.mit.edu	37	9	6328769	6328769	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH1	7166	broad.mit.edu	37	11	18047940	18047941	+	Intron	INS	-	A	A	rs66864134		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH1	7166	broad.mit.edu	37	11	18050811	18050811	+	Frame_Shift_Del	DEL	A	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPRX1	284355	broad.mit.edu	37	19	48305217	48305217	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186322924	186322925	+	Missense_Mutation	DNP	CA	TT	TT			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2P1	646405	broad.mit.edu	37	13	25517755	25517755	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10969090	10969090	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPX2	22974	broad.mit.edu	37	20	30366632	30366632	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRA2B	6434	broad.mit.edu	37	3	185655540	185655540	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123892288	123892288	+	Intron	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREM2	54209	broad.mit.edu	37	6	41127558	41127558	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM42	287015	broad.mit.edu	37	3	140406835	140406835	+	Silent	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM42	287015	broad.mit.edu	37	3	140406842	140406842	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248023844	248023844	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM72	493829	broad.mit.edu	37	16	31234185	31234185	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189026059	189026059	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP11	9321	broad.mit.edu	37	14	92491728	92491728	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72948636	72948636	+	Silent	SNP	C	A	A	rs146434598	byFrequency	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31362532	31362532	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45784045	45784045	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234891682	234891682	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10IP	254187	broad.mit.edu	37	11	65721001	65721001	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31767930	31767930	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768285	31768285	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK2	146057	broad.mit.edu	37	15	43086818	43086818	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC24	164118	broad.mit.edu	37	1	156554984	156554984	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179395788	179395788	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179424097	179424097	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179427802	179427802	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179578925	179578925	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179640673	179640673	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA4A	7277	broad.mit.edu	37	2	220115780	220115780	+	Missense_Mutation	SNP	C	A	A	rs146165952	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUT1	64852	broad.mit.edu	37	11	62358944	62358944	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXK	7294	broad.mit.edu	37	4	48112639	48112640	+	Intron	INS	-	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNRD1	7296	broad.mit.edu	37	12	104705135	104705135	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRO3	7301	broad.mit.edu	37	15	41865602	41865602	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW3	127253	broad.mit.edu	37	1	75204454	75204454	+	Silent	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF2	11338	broad.mit.edu	37	19	56173908	56173908	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2Q2	92912	broad.mit.edu	37	15	76168549	76168549	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN1	29979	broad.mit.edu	37	9	86293365	86293365	+	Silent	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19478267	19478267	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN10	127733	broad.mit.edu	37	1	20517691	20517691	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A3	79799	broad.mit.edu	37	4	69795752	69795752	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A3	79799	broad.mit.edu	37	4	69817245	69817245	+	Silent	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B28	54490	broad.mit.edu	37	4	70152549	70152549	+	Missense_Mutation	SNP	C	A	A	rs144043239		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1	54887	broad.mit.edu	37	6	34835154	34835154	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UIMC1	51720	broad.mit.edu	37	5	176396453	176396453	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17756920	17756920	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35579942	35579942	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USF2	7392	broad.mit.edu	37	19	35769860	35769860	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215802171	215802171	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215987022	215987022	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216173810	216173810	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216405371	216405371	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216420237	216420237	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP14	9097	broad.mit.edu	37	18	196747	196747	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP49	25862	broad.mit.edu	37	6	41774568	41774568	+	Missense_Mutation	SNP	C	T	T	rs148441118	byFrequency	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP4	7375	broad.mit.edu	37	3	49336075	49336075	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP51	158880	broad.mit.edu	37	X	55513497	55513497	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP8	9101	broad.mit.edu	37	15	50785682	50785682	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144745141	144745141	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107446521	107446521	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	17619316	17619316	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	22498484	22498485	+	IGR	INS	-	AGA	AGA	rs140751641	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	122484617	122484617	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	41681497	41681497	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4496245	4496245	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49088628	49088628	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49104581	49104581	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49104587	49104587	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71888732	71888732	+	IGR	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90848510	90848510	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31769248	31769248	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	44053852	44053852	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	93518163	93518163	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19940848	19940848	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19413384	19413384	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19413404	19413404	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19422367	19422367	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19475451	19475451	+	IGR	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20085021	20085021	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	50517504	50517504	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59261754	59261754	+	IGR	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20178178	20178178	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22448512	22448512	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22448780	22448780	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22448782	22448782	+	IGR	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79025977	79025977	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32077748	32077748	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32186842	32186842	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32374991	32374991	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32402320	32402320	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32447450	32447450	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32621069	32621069	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32621174	32621174	+	IGR	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33021010	33021010	+	IGR	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33401393	33401393	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33410781	33410781	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48752127	48752127	+	IGR	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	18301764	18301764	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	18554506	18554506	+	IGR	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20629971	20629971	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25351543	25351543	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26034158	26034158	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14146631	14146631	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41901728	41901728	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57597429	57597429	+	IGR	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22551521	22551521	+	IGR	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148853942	148853942	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149091479	149091479	+	IGR	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	154351004	154351004	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157680173	157680173	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158424629	158424629	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158425042	158425042	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158507344	158507344	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166246619	166246619	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175014203	175014203	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247902226	247902227	+	IGR	INS	-	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248486819	248486819	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14917071	14917071	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31720676	31720676	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32410442	32410442	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16868528	16868528	+	IGR	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107314855	107314855	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130987327	130987327	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132384535	132384535	+	IGR	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	174350988	174350988	+	IGR	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	174351039	174351039	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17567315	17567315	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177065756	177065756	+	IGR	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194994999	194994999	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58689036	58689036	+	IGR	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	65432832	65432832	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81424484	81424484	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91795554	91795554	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91801049	91801049	+	IGR	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91893931	91893931	+	IGR	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96240721	96240721	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	98018459	98018459	+	IGR	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	155705187	155705187	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31495571	31495571	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75378236	75378236	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90262972	90262972	+	IGR	SNP	C	G	G	rs116126561	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	118496655	118496655	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	125384679	125384679	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	156306596	156306596	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	46726383	46726383	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64216646	64216646	+	IGR	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	68416534	68416534	+	IGR	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70274755	70274755	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70284763	70284763	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70304147	70304147	+	IGR	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9386318	9386318	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9424017	9424017	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110528115	110528115	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	115387951	115387951	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	126506571	126506571	+	IGR	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154871844	154871844	+	IGR	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30365673	30365673	+	IGR	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	44113725	44113725	+	IGR	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	55571732	55571732	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	78004740	78004740	+	IGR	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	98869623	98869623	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	122004659	122004659	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27491645	27491645	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	42467520	42467520	+	IGR	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	46173896	46173896	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	51402104	51402104	+	IGR	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	68643903	68643903	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80777107	80777107	+	IGR	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87607216	87607216	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144707780	144707780	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38695587	38695587	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53256248	53256248	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930637	53930637	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56570399	56570399	+	IGR	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56636283	56636284	+	IGR	DNP	GG	TT	TT			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217026	57217026	+	IGR	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57316687	57316687	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57659519	57659519	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62910167	62910167	+	IGR	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63020409	63020409	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63032776	63032776	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6969405	6969405	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	82219172	82219172	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111821781	111821781	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	125933312	125933312	+	IGR	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	31077510	31077510	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47885737	47885737	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48076636	48076636	+	IGR	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86529688	86529688	+	IGR	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92610560	92610560	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98636605	98636605	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	136944061	136944061	+	IGR	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29825695	29825695	+	IGR	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29826469	29826469	+	IGR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44170478	44170478	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67329255	67329255	+	IGR	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106516499	106516499	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122648461	122648461	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134738434	134738434	+	IGR	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134741636	134741636	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134772342	134772342	+	IGR	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139161820	139161820	+	IGR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147546423	147546423	+	IGR	SNP	A	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147546580	147546580	+	IGR	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	72989477	72989477	+	IGR	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108322134	108322134	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIM	7431	broad.mit.edu	37	10	17277910	17277910	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS11	55823	broad.mit.edu	37	11	118944473	118944473	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100026338	100026339	+	Intron	INS	-	TTT	TTT			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS36	51028	broad.mit.edu	37	13	53007716	53007716	+	Intron	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS36	51028	broad.mit.edu	37	13	53007718	53007718	+	Intron	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38810739	38810739	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR16	146845	broad.mit.edu	37	17	9536125	9536125	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR24	84219	broad.mit.edu	37	16	739444	739444	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR91	29062	broad.mit.edu	37	7	134896260	134896260	+	5'UTR	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPI1	55062	broad.mit.edu	37	17	66440705	66440705	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPI2	26100	broad.mit.edu	37	7	5239104	5239104	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP1	8840	broad.mit.edu	37	8	134225226	134225226	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WLS	79971	broad.mit.edu	37	1	68627438	68627438	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WLS	79971	broad.mit.edu	37	1	68659674	68659674	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT3A	89780	broad.mit.edu	37	1	228238442	228238442	+	Silent	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC2	80014	broad.mit.edu	37	4	184210854	184210854	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XCL1	6375	broad.mit.edu	37	1	168550551	168550551	+	3'UTR	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31573033	31573033	+	Silent	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168114534	168114534	+	3'UTR	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO5	57510	broad.mit.edu	37	6	43498531	43498531	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF5	81555	broad.mit.edu	37	5	143545042	143545042	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB11	27107	broad.mit.edu	37	3	101371321	101371321	+	Intron	SNP	T	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB39	9880	broad.mit.edu	37	12	57398575	57398575	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC11	23318	broad.mit.edu	37	1	52901131	52901131	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC11	23318	broad.mit.edu	37	1	52930699	52930699	+	Intron	SNP	T	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145157460	145157460	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND3	60685	broad.mit.edu	37	6	38119971	38119971	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77776345	77776345	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP2	80108	broad.mit.edu	37	5	178339731	178339731	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF131	7690	broad.mit.edu	37	5	43174960	43174960	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF192	7745	broad.mit.edu	37	6	28121316	28121316	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF214	7761	broad.mit.edu	37	11	7021692	7021692	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF22	7570	broad.mit.edu	37	10	45498928	45498928	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF267	10308	broad.mit.edu	37	16	31927756	31927756	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF292	23036	broad.mit.edu	37	6	87970078	87970078	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF318	24149	broad.mit.edu	37	6	43322931	43322931	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF396	252884	broad.mit.edu	37	18	32954025	32954025	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF432	9668	broad.mit.edu	37	19	52538203	52538203	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF470	388566	broad.mit.edu	37	19	57089368	57089368	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57188660	57188661	+	Frame_Shift_Ins	INS	-	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF512B	57473	broad.mit.edu	37	20	62595355	62595355	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF532	55205	broad.mit.edu	37	18	56621091	56621091	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF534	147658	broad.mit.edu	37	19	52941164	52941164	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935819	30935819	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30936301	30936301	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF585B	92285	broad.mit.edu	37	19	37676140	37676140	+	Missense_Mutation	SNP	T	A	A	rs149106602		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22363427	22363427	+	Silent	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF704	619279	broad.mit.edu	37	8	81577099	81577099	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63679724	63679724	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF770	54989	broad.mit.edu	37	15	35275448	35275448	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF813	126017	broad.mit.edu	37	19	53995126	53995126	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57829818	57829818	+	3'UTR	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF836	162962	broad.mit.edu	37	19	52663757	52663757	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF841	284371	broad.mit.edu	37	19	52569171	52569171	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF876P	642280	broad.mit.edu	37	4	212587	212587	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF90	7643	broad.mit.edu	37	19	20215049	20215049	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22940689	22940689	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187698752	187698752	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187713785	187713785	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZW10	9183	broad.mit.edu	37	11	113631404	113631404	+	Intron	SNP	T	C	C	rs140855538	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22446833	22446833	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22934989	22934989	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102315110	102315110	+	5'Flank	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25484838	25484838	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25486978	25486978	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29394815	29394815	+	Intron	SNP	G	C	C			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33783386	33783386	+	5'Flank	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21731274	21731274	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21731278	21731278	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	151993886	151993886	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133076286	133076286	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89291893	89291893	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89987023	89987023	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90122202	90122202	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	88814226	88814226	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	13790926	13790926	+	5'Flank	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9897176	9897176	+	Intron	SNP	A	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124116403	124116403	+	5'Flank	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142099944	142099944	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142104652	142104652	+	Intron	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142161925	142161925	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142198107	142198107	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142379068	142379068	+	Intron	SNP	C	G	G			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142457308	142457308	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142499641	142499641	+	RNA	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	29757675	29757675	+	5'UTR	SNP	C	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38407338	38407338	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63370528	63370528	+	Intron	SNP	G	T	T			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73342089	73342089	+	Intron	SNP	T	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100142741	100142741	+	Intron	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
