Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ARHGEF1	9138	genome.wustl.edu	37	19	42396193	42396193	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	19	42396193	42396193	C	T	SNP	ARHGEF1	NM_199002.1	human	genbank	58_37c	+1	reviewed	missense	c.368	p.A123V	1.000	HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMSmart_PH,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_SSF50729	-	no_errors
ARHGEF10L	55160	genome.wustl.edu	37	1	17964411	17964411	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	1	17964411	17964411	C	A	SNP	ARHGEF10L	NM_018125.3	human	genbank	58_37c	+1	validated	silent	c.1956	p.L652	1.000	superfamily_PH domain-like	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),superfamily_WD40 repeat-like,superfamily_PH domain-like	-	no_errors
ARID2	196528	genome.wustl.edu	37	12	46230605	46230605	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	12	46230605	46230605	G	A	SNP	ARID2	NM_152641.2	human	genbank	58_37c	+1	validated	missense	c.854	p.R285Q	1.000	NULL	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,PatternScan_ZINC_FINGER_C2H2_1,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
CASP2	835	genome.wustl.edu	37	7	142985571	142985571	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	7	142985571	142985571	C	T	SNP	CASP2	NM_032982.2	human	genbank	58_37c	+1	reviewed	missense	c.23	p.S8F	0.000	NULL	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS,superfamily_Caspase-like	-	no_errors
CHAF1A	10036	genome.wustl.edu	37	19	4432011	4432011	+	Missense_Mutation	SNP	G	G	T	rs11556317	byCluster;byFrequency	TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	19	4432011	4432011	G	T	SNP	CHAF1A	NM_005483.2	human	genbank	58_37c	+1	validated	missense	c.2010	p.E670D	0.991	NULL	NULL	-	no_errors
CLSTN2	64084	genome.wustl.edu	37	3	140251267	140251267	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	3	140251267	140251267	C	T	SNP	CLSTN2	NM_022131.2	human	genbank	58_37c	+1	validated	silent	c.1446	p.N482	0.984	superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	-	no_errors
DNAH14	127602	genome.wustl.edu	37	1	225328430	225328431	+	Splice_Site	INS	-	-	AG	novel	unknown	TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	1	225328430	225328431	-	AG	INS	DNAH14	NM_001373.1	human	genbank	58_37c	+1	validated	splice_site_ins	c.4167-3_4167-2	e26-2	0.008:0.010	-	-	-	no_errors
ENSG00000224435	0	genome.wustl.edu	37	22	16346045	16346045	+	Splice_Site	SNP	T	T	C	rs56234788	unknown	TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	22	16346045	16346045	T	C	SNP	ENSG00000224435	ENST00000426025	human	ensembl	58_37c	+1	known	splice_site	c.NULL	NULL	0.998	-	-	-	no_coding_region:pseudogene
GPI	2821	genome.wustl.edu	37	19	34856187	34856188	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	19	34856187	34856188	-	G	INS	GPI	NM_000175.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.16_17	p.D7fs	0.460:0.410	superfamily_SSF53697	HMMPfam_PGI,PatternScan_P_GLUCOSE_ISOMERASE_2,PatternScan_P_GLUCOSE_ISOMERASE_1,superfamily_SSF53697	-	no_errors
HECW1	23072	genome.wustl.edu	37	7	43590145	43590145	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	7	43590145	43590145	C	T	SNP	HECW1	NM_015052.3	human	genbank	58_37c	+1	validated	silent	c.4350	p.R1450	0.091	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT	HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB	-	no_errors
MST1	4485	genome.wustl.edu	37	3	49723112	49723112	+	Frame_Shift_Del	DEL	T	T	-	rs11295598	unknown	TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	3	49723112	49723112	T	-	DEL	MST1	NM_020998.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1304	p.N435fs	1.000	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like,PatternScan_KRINGLE_1	HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Trypsin,HMMSmart_SM00020,HMMPfam_PAN_1,HMMSmart_SM00473,superfamily_Trypsin-like serine proteases,superfamily_Kringle-like,PatternScan_KRINGLE_1,superfamily_Hairpin loop containing domain-like	-	no_errors
NF1	4763	genome.wustl.edu	37	17	29548939	29548939	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	17	29548939	29548939	G	A	SNP	NF1	NM_001042492.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1713	p.W571*	1.000	NULL	HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP	-	no_errors
SEC31B	25956	genome.wustl.edu	37	10	102247512	102247512	+	Missense_Mutation	SNP	C	C	T	rs149714301	unknown	TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	10	102247512	102247512	C	T	SNP	SEC31B	NM_015490.3	human	genbank	58_37c	-1	reviewed	missense	c.3401	p.R1134Q	0.989	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
TEKT1	83659	genome.wustl.edu	37	17	6733605	6733605	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	17	6733605	6733605	T	G	SNP	TEKT1	NM_053285.1	human	genbank	58_37c	-1	reviewed	silent	c.91	p.R31	0.728	HMMPfam_Tektin	HMMPfam_Tektin	-	no_errors
