Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
CCDC105	126402	genome.wustl.edu	37	19	15131381	15131381	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	19	15131381	15131381	C	T	SNP	CCDC105	NM_173482.2	human	genbank	58_37c	+1	validated	missense	c.784	p.H262Y	0.995	NULL	NULL	-	no_errors
COL27A1	85301	genome.wustl.edu	37	9	117004482	117004482	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	9	117004482	117004482	A	T	SNP	COL27A1	NM_032888.2	human	genbank	58_37c	+1	validated	missense	c.2851	p.M951L	0.985	HMMPfam_Collagen	HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
CPN1	1369	genome.wustl.edu	37	10	101835672	101835672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	10	101835672	101835672	G	A	SNP	CPN1	NM_001308.2	human	genbank	58_37c	-1	reviewed	missense	c.416	p.A139V	0.003	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases	HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain,superfamily_Zn-dependent exopeptidases	-	no_errors
CROCCL1	84809	genome.wustl.edu	37	1	16955128	16955128	+	RNA	SNP	A	A	G	rs1762949	byCluster;byFrequency;by2Hit2Allele;byHapmap	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	1	16955128	16955128	A	G	SNP	CROCCL1	NR_026752.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.562	-	-	-	pseudogene
FGF11	2256	genome.wustl.edu	37	17	7346061	7346061	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	17	7346061	7346061	G	A	SNP	FGF11	NM_004112.2	human	genbank	58_37c	+1	reviewed	missense	c.557	p.R186Q	1.000	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like	HMMPfam_FGF,HMMSmart_FGF,PatternScan_HBGF_FGF,superfamily_Cytok_IL1_like	-	no_errors
GALNT10	55568	genome.wustl.edu	37	5	153760044	153760044	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	5	153760044	153760044	C	G	SNP	GALNT10	NM_198321.3	human	genbank	58_37c	+1	reviewed	missense	c.791	p.P264R	1.000	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GPR143	4935	genome.wustl.edu	37	X	9716674	9716674	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	X	9716674	9716674	C	T	SNP	GPR143	NM_000273.2	human	genbank	58_37c	-1	reviewed	missense	c.548	p.G183D	1.000	HMMPfam_Ocular_alb	HMMPfam_Ocular_alb	-	no_errors
HRH2	3274	genome.wustl.edu	37	5	175110783	175110783	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	5	175110783	175110783	G	A	SNP	HRH2	NM_001131055.1	human	genbank	58_37c	+1	reviewed	missense	c.547	p.G183R	0.990	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
HSP90AB4P	664618	genome.wustl.edu	37	15	58983683	58983683	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	15	58983683	58983683	C	G	SNP	HSP90AB4P	ENST00000380522	human	ensembl	58_37c	-1	known	missense	c.1137	p.E379D	1.000	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90,superfamily_SSF110942	-	no_errors
MAGEL2	54551	genome.wustl.edu	37	15	23890165	23890165	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	15	23890165	23890165	G	A	SNP	MAGEL2	NM_019066.4	human	genbank	58_37c	-1	reviewed	nonsense	c.916	p.Q306*	0.780	NULL	HMMPfam_MAGE	-	no_errors
MUC2	4583	genome.wustl.edu	37	11	1092598	1092599	+	In_Frame_Ins	INS	-	-	CAA	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	11	1092598	1092599	-	CAA	INS	MUC2	NM_002457.2	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.4417_4418	p.1477in_frame_insT	0.290:0.230	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_EGF_1,HMMPfam_C8	-	no_errors
MUC21	394263	genome.wustl.edu	37	6	30954356	30954356	+	Missense_Mutation	SNP	C	C	T	rs138756149	byFrequency	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	6	30954356	30954356	C	T	SNP	MUC21	NM_001010909.2	human	genbank	58_37c	+1	validated	missense	c.404	p.A135V	0.499	NULL	NULL	-	no_errors
MYEF2	50804	genome.wustl.edu	37	15	48441260	48441260	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	15	48441260	48441260	C	T	SNP	MYEF2	NM_016132.3	human	genbank	58_37c	-1	validated	nonsense	c.1608	p.W536*	1.000	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
MYO7A	4647	genome.wustl.edu	37	11	76910861	76910861	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	11	76910861	76910861	C	A	SNP	MYO7A	NM_000260.3	human	genbank	58_37c	+1	reviewed	missense	c.4850	p.P1617H	1.000	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_MyTH4,HMMSmart_SM00139,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_FERM_N,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PCDHA11	56138	genome.wustl.edu	37	5	140248828	140248828	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	5	140248828	140248828	G	A	SNP	PCDHA11	NM_018902.3	human	genbank	58_37c	+1	reviewed	missense	c.140	p.R47H	1.000	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	3	178952085	178952085	A	T	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047L	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLCB4	5332	genome.wustl.edu	37	20	9401989	9401989	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	20	9401989	9401989	G	A	SNP	PLCB4	NM_000933.3	human	genbank	58_37c	+1	reviewed	missense	c.2164	p.V722I	1.000	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,HMMPfam_PI-PLC-X,HMMSmart_PLCXc,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMPfam_DUF1154,HMMPfam_efhand_like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF47473,superfamily_SSF50729	-	no_errors
PPP1R13B	23368	genome.wustl.edu	37	14	104224078	104224078	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	14	104224078	104224078	G	T	SNP	PPP1R13B	NM_015316.2	human	genbank	58_37c	-1	reviewed	missense	c.365	p.P122Q	0.997	NULL	HMMPfam_SH3_1,HMMSmart_SH3,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
RCOR1	23186	genome.wustl.edu	37	14	103167650	103167650	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	14	103167650	103167650	G	T	SNP	RCOR1	NM_015156.2	human	genbank	58_37c	+1	validated	missense	c.472	p.G158W	1.000	NULL	HMMPfam_ELM2,HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding	-	no_errors
SGCZ	137868	genome.wustl.edu	37	8	14412415	14412415	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	8	14412415	14412415	T	-	DEL	SGCZ	NM_139167.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.60	p.L21fs	0.953	NULL	HMMPfam_Sarcoglycan_1	-	no_errors
TPP1	1200	genome.wustl.edu	37	11	6638532	6638532	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	11	6638532	6638532	C	T	SNP	TPP1	NM_000391.3	human	genbank	58_37c	-1	reviewed	missense	c.508	p.V170M	1.000	superfamily_Protease propeptides/inhibitors,HMMPfam_Pro-kuma_activ	superfamily_Subtilisin-like,superfamily_Protease propeptides/inhibitors,HMMPfam_Pro-kuma_activ	-	no_errors
XIRP2	129446	genome.wustl.edu	37	2	168115850	168115850	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	2	168115850	168115850	A	T	SNP	XIRP2	NM_001079810.2	human	genbank	58_37c	+1	validated	missense	c.2794	p.R932W	0.989	NULL	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716	-	no_errors
ZNF70	7621	genome.wustl.edu	37	22	24086804	24086804	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	22	24086804	24086804	T	C	SNP	ZNF70	NM_021916.2	human	genbank	58_37c	-1	provisional	missense	c.524	p.K175R	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
