Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AFF2	0	genome.wustl.edu	37	X	148039966	148039966	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	X	148039966	148039966	C	T	SNP	AFF2	NM_002025.3	human	genbank	58_37c	+1	reviewed	missense	c.2668	p.H890Y	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
ARVP6125	0	genome.wustl.edu	37	3	129762944	129762945	+	RNA	DEL	AC	AC	-	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	3	129762944	129762945	AC	-	DEL	ARVP6125	XR_041956.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.102:0.099	-	-	-	no_errors
C14orf167	0	genome.wustl.edu	37	14	24409932	24409933	+	RNA	DEL	GT	GT	-	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	14	24409932	24409933	GT	-	DEL	C14orf167	NR_023921.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors
CEP70	0	genome.wustl.edu	37	3	138290122	138290122	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	3	138290122	138290122	C	T	SNP	CEP70	NM_024491.2	human	genbank	58_37c	-1	validated	missense	c.146	p.R49K	0.700	NULL	NULL	-	no_errors
CLEC17A	0	genome.wustl.edu	37	19	14706127	14706127	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	19	14706127	14706127	G	A	SNP	CLEC17A	NM_207390.2	human	genbank	58_37c	+1	validated	missense	c.394	p.A132T	0.017	NULL	HMMPfam_Lectin_C,superfamily_C-type lectin-like	-	no_errors
DPY19L2P4	0	genome.wustl.edu	37	7	89749091	89749091	+	RNA	SNP	G	G	C	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	7	89749091	89749091	G	C	SNP	DPY19L2P4	NR_003551.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.143	-	-	-	pseudogene
ENSG00000198938	0	genome.wustl.edu	37	MT	9850	9850	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	MT	9850	9850	T	C	SNP	ENSG00000198938	ENST00000362079	human	ensembl	58_37c	+1	known	missense	c.644	p.L215P	NULL	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000216173	0	genome.wustl.edu	37	14	99828698	99828699	+	RNA	DEL	CA	CA	-	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	14	99828698	99828699	CA	-	DEL	ENSG00000216173	ENST00000401354	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors
ENSG00000228632	0	genome.wustl.edu	37	2	122368198	122368199	+	In_Frame_Ins	INS	-	-	GGA	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	2	122368198	122368199	-	GGA	INS	ENSG00000228632	ENST00000417150	human	ensembl	58_37c	+1	known	in_frame_ins	c.260_261	p.91in_frame_insE	0.018:0.017	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000231751	0	genome.wustl.edu	37	17	79499526	79499527	+	In_Frame_Ins	INS	-	-	TGA	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	17	79499526	79499527	-	TGA	INS	ENSG00000231751	ENST00000412561	human	ensembl	58_37c	+1	known	in_frame_ins	c.1001_1002	p.337in_frame_insD	0.008:0.007	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000233389	0	genome.wustl.edu	37	19	24064117	24064118	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	19	24064117	24064118	AG	-	DEL	ENSG00000233389	ENST00000449355	human	ensembl	58_37c	+1	known	frame_shift_del	c.177_178	p.E60fs	0.000:0.000	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	In_Frame_Ins	INS	-	-	GCA	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	9	141107536	141107537	-	GCA	INS	FAM157B	NM_001145249.1	human	genbank	58_37c	+1	inferred	in_frame_ins	c.218_219	p.77in_frame_insQ	0.033:0.036	NULL	NULL	-	no_errors
GPR110	0	genome.wustl.edu	37	6	46976736	46976736	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	6	46976736	46976736	A	C	SNP	GPR110	NM_153840.2	human	genbank	58_37c	-1	validated	missense	c.2435	p.V812G	0.452	HMMPfam_7tm_2	HMMPfam_SEA,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,superfamily_SEA domain	-	no_errors
ILF3	0	genome.wustl.edu	37	19	10781834	10781834	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	19	10781834	10781834	A	G	SNP	ILF3	NM_017620.2	human	genbank	58_37c	+1	reviewed	missense	c.188	p.D63G	0.137	NULL	HMMPfam_dsrm,HMMSmart_SM00358,HMMPfam_DZF,HMMSmart_SM00572,superfamily_dsRNA-binding domain-like	-	no_errors
LOC100131851	0	genome.wustl.edu	37	7	39873126	39873127	+	In_Frame_Ins	INS	-	-	GCG	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	7	39873126	39873127	-	GCG	INS	LOC100131851	XM_001717865.2	human	genbank	58_37c	+1	model	in_frame_ins	c.371_372	p.125in_frame_ins	0.002:0.000	NULL	NULL	-	no_errors
LOC100132048	0	genome.wustl.edu	37	8	7585591	7585591	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	8	7585591	7585591	T	A	SNP	LOC100132048	XM_001720647.2	human	genbank	58_37c	-1	model	missense	c.109	p.T37S	0.011	NULL	NULL	-	no_errors
LOC100133078	0	genome.wustl.edu	37	1	148247844	148247844	+	RNA	SNP	C	C	T	rs495101	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	1	148247844	148247844	C	T	SNP	LOC100133078	XR_078734.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.060	-	-	-	pseudogene
LOC100287647	0	genome.wustl.edu	37	16	33939709	33939710	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	16	33939709	33939710	TC	-	DEL	LOC100287647	XM_002343473.1	human	genbank	58_37c	+1	model	frame_shift_del	c.75_76	p.L26fs	0.002:0.004	NULL	NULL	-	no_errors
LOC100292392	0	genome.wustl.edu	37	4	14105870	14105870	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	4	14105870	14105870	A	G	SNP	LOC100292392	XM_002345775.1	human	genbank	58_37c	-1	model	missense	c.590	p.I197T	0.008	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
MANEA	0	genome.wustl.edu	37	6	96034869	96034870	+	Frame_Shift_Ins	INS	-	-	TATA	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	6	96034869	96034870	-	TATA	INS	MANEA	ENST00000369293	human	ensembl	58_37c	+1	known	frame_shift_ins	c.554_555	p.I189fs	0.020:0.026	NULL	NULL	-	no_errors
MAP3K1	0	genome.wustl.edu	37	5	56184093	56184093	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	5	56184093	56184093	G	C	SNP	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	missense	c.4298	p.W1433S	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MED12	0	genome.wustl.edu	37	X	70361169	70361170	+	In_Frame_Ins	INS	-	-	CAC	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	X	70361169	70361170	-	CAC	INS	MED12	NM_005120.2	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.6357_6358	p.2119in_frame_insH	1.000:1.000	NULL	HMMPfam_Med12	-	no_errors
MED15	0	genome.wustl.edu	37	22	20920813	20920814	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	22	20920813	20920814	-	CAG	INS	MED15	NM_001003891.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.750_751	p.254in_frame_insQ	0.993:0.998	NULL	HMMPfam_ARC105_Med_act	-	no_errors
MLL3	0	genome.wustl.edu	37	7	152027750	152027750	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	7	152027750	152027750	G	A	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	nonsense	c.325	p.Q109*	0.994	NULL	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MT-CO2	0	genome.wustl.edu	37	MT	7977	7977	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	MT	7977	7977	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	58_37c	+1	known	missense	c.392	p.G131D	NULL	HMMPfam_COX2,superfamily_Cupredoxins	PatternScan_COX2,HMMPfam_COX2,superfamily_Cupredoxins,HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region	-	mismatch_between_exon_seq_and_reference
MUC4	0	genome.wustl.edu	37	3	195511465	195511465	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	3	195511465	195511465	G	A	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.6986	p.A2329V	0.040	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MYST4	0	genome.wustl.edu	37	10	76781906	76781908	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	10	76781906	76781908	GAA	-	DEL	MYST4	NM_012330.2	human	genbank	58_37c	+1	validated	in_frame_del	c.3289_3291	p.E1100in_frame_del	0.314:0.300:0.213	NULL	"HMMSmart_SM00249,HMMPfam_MOZ_SAS,HMMSmart_SM00526,superfamily_FYVE/PHD zinc finger,superfamily_Acyl-CoA N-acyltransferases (Nat),PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
NONO	0	genome.wustl.edu	37	X	70511766	70511766	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	X	70511766	70511766	G	A	SNP	NONO	NM_001145408.1	human	genbank	58_37c	+1	reviewed	missense	c.292	p.G98R	1.000	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_NOPS,superfamily_RNA-binding domain RBD	-	no_errors
OSBPL11	0	genome.wustl.edu	37	3	125297815	125297815	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	3	125297815	125297815	C	G	SNP	OSBPL11	NM_022776.4	human	genbank	58_37c	-1	reviewed	missense	c.478	p.A160P	1.000	NULL	HMMPfam_Oxysterol_BP,HMMPfam_PH,HMMSmart_SM00233,PatternScan_OSBP,superfamily_PH domain-like	-	no_errors
PLXNA3	0	genome.wustl.edu	37	X	153696522	153696522	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	X	153696522	153696522	G	T	SNP	PLXNA3	NM_017514.3	human	genbank	58_37c	+1	reviewed	silent	c.3918	p.V1306	1.000	HMMPfam_Plexin_cytopl	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_IPT,HMMSmart_PSI,superfamily_Rho_GAP,HMMPfam_Plexin_cytopl,superfamily_Ig_E-set,superfamily_Plexin-like_fold	-	no_errors
PTPRQ	0	genome.wustl.edu	37	12	80928679	80928679	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	12	80928679	80928679	G	C	SNP	PTPRQ	ENST00000266688	human	ensembl	58_37c	+1	known	missense	c.2848	p.D950H	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RPS5	0	genome.wustl.edu	37	19	58904526	58904526	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	19	58904526	58904526	G	A	SNP	RPS5	NM_001009.3	human	genbank	58_37c	+1	reviewed	missense	c.292	p.E98K	1.000	HMMPfam_Ribosomal_S7,superfamily_Ribosomal protein S7	HMMPfam_Ribosomal_S7,PatternScan_RIBOSOMAL_S7,superfamily_Ribosomal protein S7	-	no_errors
SIN3A	0	genome.wustl.edu	37	15	75676715	75676732	+	In_Frame_Del	DEL	TATTTTCTGCCAGGTAAA	TATTTTCTGCCAGGTAAA	-	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	TATTTTCTGCCAGGTAAA	TATTTTCTGCCAGGTAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	15	75676715	75676732	TATTTTCTGCCAGGTAAA	-	DEL	SIN3A	NM_001145357.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.3085_3068	p.LYLAENN1023in_frame_delH	0.996:1.000:1.000:1.000:1.000:1.000:1.000:0.177:0.959:0.960:1.000:1.000:1.000:1.000:1.000:1.000:0.971:1.000	NULL	HMMPfam_PAH,superfamily_PAH,HMMPfam_HDAC_interact,HMMSmart_HDAC_interact	-	no_errors
SLC4A10	0	genome.wustl.edu	37	2	162815009	162815009	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	2	162815009	162815009	C	T	SNP	SLC4A10	NM_022058.3	human	genbank	58_37c	+1	reviewed	missense	c.2716	p.P906S	1.000	HMMPfam_HCO3_cotransp,PatternScan_HTH_ARAC_FAMILY_1	HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein,PatternScan_HTH_ARAC_FAMILY_1	-	no_errors
VAV2	0	genome.wustl.edu	37	9	136699429	136699429	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	9	136699429	136699429	G	A	SNP	VAV2	NM_001134398.1	human	genbank	58_37c	-1	reviewed	silent	c.414	p.D138	0.990	superfamily_Calponin-homology domain CH-domain	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_SH2,HMMSmart_SM00252,PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_SH3_2,superfamily_Calponin-homology domain CH-domain,superfamily_PH domain-like,superfamily_SH2 domain,superfamily_Cysteine-rich domain	-	no_errors
WDR72	0	genome.wustl.edu	37	15	54025259	54025259	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	15	54025259	54025259	G	A	SNP	WDR72	NM_182758.2	human	genbank	58_37c	-1	validated	nonsense	c.88	p.R30*	0.928	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ZHX2	0	genome.wustl.edu	37	8	123964746	123964746	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	8	123964746	123964746	G	A	SNP	ZHX2	NM_014943.3	human	genbank	58_37c	+1	reviewed	silent	c.996	p.K332	1.000	superfamily_Homeodomain_like	HMMPfam_Homeobox,HMMSmart_HOX,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1	-	no_errors
ZNF384	0	genome.wustl.edu	37	12	6777070	6777072	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	12	6777070	6777072	TGC	-	DEL	ZNF384	NM_001135734.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1544_1542	p.Q516in_frame_del	0.291:0.350:0.379	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
