Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
ADAMTS16	170690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	5209271	5209271	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
ANKRD42	338699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	82905759	82905759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
BAZ1B	9031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	72856668	72856668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
BCAN	63827	hgsc.bcm.edu;ucsc.edu	37	1	156627509	156627509	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
BID	637	broad.mit.edu;hgsc.bcm.edu	37	22	18220987	18220987	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
BRCA2	675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	32910986	32910986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
CAMLG	819	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	134079711	134079711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
CBARA1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	74128087	74128087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
CBLC	23624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45284600	45284600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
COPS4	51138	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	83970374	83970374	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
CYP4A11	1579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	47403749	47403749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
DNAJC16	23341	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	15855691	15855691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
FN1	2335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	216236992	216236992	+	Silent	SNP	C	C	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
GAK	2580	broad.mit.edu;ucsc.edu	37	4	843678	843678	+	Splice_Site	SNP	A	G	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
GAK	2580	hgsc.bcm.edu	37	4	884397	884397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
GPR126	57211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	142691426	142691426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
ITM2B	9445	hgsc.bcm.edu	37	13	48835350	48835350	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
JAKMIP2	9832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	147009293	147009293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
JKAMP	51528	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	59954452	59954452	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
JUP	3728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39919273	39919273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
MLL2	8085	broad.mit.edu;ucsc.edu	37	12	49447312	49447312	+	Silent	SNP	G	A	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
MLL2	8085	broad.mit.edu;ucsc.edu	37	12	49447313	49447313	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq;PacBio			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
NFIB	4781	hgsc.bcm.edu;ucsc.edu	37	9	14307384	14307385	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
PCDHGC5	56097	broad.mit.edu;ucsc.edu	37	5	140869551	140869551	+	Silent	SNP	T	A	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
PSMD6	9861	broad.mit.edu;hgsc.bcm.edu	37	3	64007994	64007994	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
PTPN13	5783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	87653571	87653571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
RTN4	57142	broad.mit.edu;ucsc.edu	37	2	55253832	55253832	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
SGCA	6442	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48252717	48252717	+	Silent	SNP	C	C	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
SIK2	23235	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	111591712	111591712	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
SIPA1L2	57568	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	232650730	232650730	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
SLC9A9	285195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	143297454	143297454	+	Silent	SNP	C	C	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
VAPB	9217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	57015985	57015985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
ZAN	7455	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100361427	100361427	+	Splice_Site	SNP	A	A	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
ZNF292	23036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	87966445	87966445	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
ZNF324B	388569	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58967919	58967919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
EFHA1	221154	broad.mit.edu	37	13	22067484	22067484	+	Silent	SNP	T	C	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
EN1	2019	broad.mit.edu	37	2	119604102	119604103	+	Frame_Shift_Del	DEL	CG	-	-	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
FAM150B	285016	broad.mit.edu	37	2	283140	283140	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
GSPT1	2935	broad.mit.edu	37	16	11984971	11984971	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
L1CAM	3897	broad.mit.edu	37	X	153135050	153135050	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
MYO10	4651	broad.mit.edu	37	5	16671643	16671643	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
ZNF534	147658	broad.mit.edu	37	19	52942423	52942423	+	Missense_Mutation	SNP	T	A	A	rs112113280	bycluster;byfrequency	TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	
