Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
ADAMTS19	171019	hgsc.bcm.edu	37	5	128797315	128797316	+	In_Frame_Ins	INS	-	-	CCCGGC	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
ANKH	56172	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	14751238	14751238	+	Silent	SNP	G	G	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
ASTN1	460	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	176993851	176993851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
ASTN2	23245	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	119204736	119204736	+	Silent	SNP	T	T	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
B3GNT8	374907	hgsc.bcm.edu	37	19	41931983	41931984	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
BDH1	622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	197238941	197238941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
BMP3	651	broad.mit.edu;hgsc.bcm.edu	37	4	81952663	81952663	+	Silent	SNP	A	A	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
C10orf35	219738	broad.mit.edu;hgsc.bcm.edu	37	10	71392632	71392632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
C2orf47	79568	broad.mit.edu;hgsc.bcm.edu	37	2	200826508	200826508	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
CCT8	10694	broad.mit.edu;hgsc.bcm.edu	37	21	30442608	30442608	+	Silent	SNP	C	C	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
CTNNA2	1496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	80097056	80097056	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
CYP1A1	1543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75013623	75013623	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
DENND1A	57706	hgsc.bcm.edu	37	9	126146189	126146197	+	Frame_Shift_Del	DEL	CGGCCTGTC	CGGCCTGTC	-	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	CGGCCTGTC	CGGCCTGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
DMXL2	23312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51758414	51758414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
DNAH2	146754	broad.mit.edu;ucsc.edu	37	17	7630455	7630455	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
DNAJA4	55466	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	78572439	78572439	+	Silent	SNP	C	C	G	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
EP300	2033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	41566499	41566499	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
EPHB4	2050	broad.mit.edu;hgsc.bcm.edu	37	7	100401094	100401094	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
ERCC2	2068	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45857991	45857991	+	Silent	SNP	C	C	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
FAM50B	26240	broad.mit.edu;ucsc.edu	37	6	3850568	3850568	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
FAM75D1	0	hgsc.bcm.edu;ucsc.edu	37	9	84608721	84608721	+	Missense_Mutation	SNP	C	C	A	rs12340292	bycluster;by2hit2allele;by1000genomes;alternate_allele	TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
FMO1	2326	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	171244561	171244561	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
FMO5	2330	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	146696569	146696569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
FRZB	2487	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	183731161	183731161	+	Silent	SNP	G	G	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
GALNTL4	374378	hgsc.bcm.edu;ucsc.edu	37	11	11470318	11470318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
GPR125	166647	broad.mit.edu;hgsc.bcm.edu	37	4	22437012	22437012	+	Silent	SNP	A	A	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
HIPK2	28996	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	139281488	139281488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
IFIT1	3434	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	91162071	91162071	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
IGSF22	283284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	18736130	18736130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
KCNN3	3782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154744736	154744736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
KRT82	3888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52793886	52793886	+	Silent	SNP	C	C	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
LELP1	149018	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153177408	153177408	+	Silent	SNP	C	C	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
LRBA	987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	151511932	151511932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
LRDD	0	broad.mit.edu;hgsc.bcm.edu	37	11	803579	803579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
LRRC61	65999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150034457	150034457	+	Silent	SNP	T	T	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
LRRIQ1	84125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	85546098	85546098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
MAGEB6	158809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	26212326	26212326	+	Silent	SNP	C	C	G	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
MAK16	84549	hgsc.bcm.edu	37	8	33354235	33354236	+	In_Frame_Ins	INS	-	-	GAT	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
MITF	4286	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	69928509	69928509	+	Missense_Mutation	SNP	C	C	T	rs190215588	by1000genomes	TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
MTUS2	23281	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	29608253	29608253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
MUC2	4583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	1087470	1087470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
MYO1A	4640	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57437906	57437906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
NMT2	9397	hgsc.bcm.edu	37	10	15151779	15151779	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
NRAP	4892	hgsc.bcm.edu;ucsc.edu	37	10	115389356	115389356	+	Silent	SNP	G	G	C	rs2286736	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes;alternate_allele	TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
OR2J3	442186	broad.mit.edu;hgsc.bcm.edu	37	6	29079901	29079901	+	Silent	SNP	C	C	G	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
PDC	5132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186415580	186415580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
PDCD6IP	10015	broad.mit.edu;hgsc.bcm.edu	37	3	33887039	33887039	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
PI4K2B	55300	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	25258214	25258214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
PKHD1	5314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	51524031	51524031	+	Silent	SNP	A	A	G	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
PLG	5340	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	161152232	161152232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
POLR2A	5430	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7417116	7417116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
PPWD1	23398	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	64867889	64867889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
PRSS12	8492	hgsc.bcm.edu;ucsc.edu	37	4	119239601	119239601	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
PXDN	7837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	1677555	1677555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
RHCG	51458	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	90039695	90039695	+	Silent	SNP	C	C	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
SATB2	23314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	200213434	200213434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
SENP1	29843	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	48442848	48442848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
SERPING1	710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57373959	57373959	+	Missense_Mutation	SNP	C	C	G	rs61761890	bycluster;alternate_allele	TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
SLC20A2	6575	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	42317465	42317465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
SYDE2	84144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	85648743	85648743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
TNKS1BP1	85456	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57077445	57077445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
USP24	23358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	55622657	55622657	+	Silent	SNP	C	C	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
USP32	84669	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	58282987	58282987	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
ZBTB1	22890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	64988623	64988623	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
ZNF107	51427	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	64166913	64166913	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
ZNF182	7569	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	47836772	47836772	+	Silent	SNP	T	T	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
ZNF445	353274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	44488853	44488853	+	Silent	SNP	G	G	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
ZNF543	125919	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57839655	57839655	+	Silent	SNP	G	G	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
ANGPTL4	51129	broad.mit.edu	37	19	8429515	8429515	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
CHRNA1	1134	broad.mit.edu	37	2	175612767	175612767	+	3'UTR	SNP	T	A	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
DOPEY2	9980	broad.mit.edu	37	21	37653892	37653892	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
FAM131C	348487	broad.mit.edu	37	1	16361916	16361916	+	Silent	SNP	G	A	A	rs80300125		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
GZMH	2999	broad.mit.edu	37	14	25076508	25076508	+	Silent	SNP	A	C	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
HIF3A	64344	broad.mit.edu	37	19	46811988	46811988	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
HSF5	124535	broad.mit.edu	37	17	56565201	56565201	+	Silent	SNP	G	T	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
JAKMIP3	282973	broad.mit.edu	37	10	133961472	133961472	+	Missense_Mutation	SNP	C	T	T	rs138739966	by1000genomes	TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
LGALS9B	284194	broad.mit.edu	37	17	20370782	20370783	+	Frame_Shift_Ins	INS	-	TC	TC	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
PDS5B	23047	broad.mit.edu	37	13	33332255	33332255	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
PTTG3P	26255	broad.mit.edu	37	8	67680233	67680233	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
Unknown	0	broad.mit.edu	37	12	92018	92018	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
Unknown	0	broad.mit.edu	37	16	15023180	15023180	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
Unknown	0	broad.mit.edu	37	9	68413572	68413572	+	RNA	SNP	C	T	T	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
Unknown	0	broad.mit.edu	37	9	68413573	68413573	+	RNA	SNP	G	C	C	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
ZDHHC18	84243	broad.mit.edu	37	1	27176851	27176851	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-A3-3378-01A-01D-0966-08	TCGA-A3-3378-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04f3a00-e743-4fed-a0b0-e6a81bdd6ddd	eacc4f56-30de-4978-a291-68a378436c34	
