Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAM15	8751	genome.wustl.edu	37	1	155029769	155029769	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	155029769	155029769	C	A	SNP	ADAM15	NM_207197.1	human	genbank	58_37c	+1	reviewed	silent	c.1254	p.P418	0.000	NULL	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AKAP9	10142	genome.wustl.edu	37	7	91632416	91632416	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	7	91632416	91632416	G	A	SNP	AKAP9	NM_005751.4	human	genbank	58_37c	+1	reviewed	missense	c.3185	p.G1062E	0.002	NULL	PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil	-	no_errors
ANGEL2	90806	genome.wustl.edu	37	1	213168400	213168400	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	213168400	213168400	A	C	SNP	ANGEL2	NM_144567.3	human	genbank	58_37c	-1	validated	missense	c.1618	p.F540V	1.000	HMMPfam_Exo_endo_phos,superfamily_DNase I-like	HMMPfam_Exo_endo_phos,superfamily_DNase I-like	-	no_errors
ANO2	57101	genome.wustl.edu	37	12	5744346	5744346	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	5744346	5744346	G	A	SNP	ANO2	NM_020373.2	human	genbank	58_37c	-1	validated	silent	c.1788	p.G596	0.016	NULL	HMMPfam_DUF590	-	no_errors
ARNT	405	genome.wustl.edu	37	1	150801630	150801630	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	150801630	150801630	A	G	SNP	ARNT	NM_001668.2	human	genbank	58_37c	-1	reviewed	missense	c.1106	p.I369T	0.998	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,HMMSmart_SM00086,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),superfamily_Positive stranded ssRNA viruses	-	no_errors
BMP6	654	genome.wustl.edu	37	6	7845400	7845400	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	6	7845400	7845400	G	A	SNP	BMP6	NM_001718.4	human	genbank	58_37c	+1	reviewed	missense	c.692	p.R231H	0.992	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1,superfamily_SSF57501	-	no_errors
CCNB1	891	genome.wustl.edu	37	5	68467280	68467283	+	Splice_Site	DEL	GTAA	GTAA	-	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	GTAA	GTAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	5	68467280	68467283	GTAA	-	DEL	CCNB1	NM_031966.2	human	genbank	58_37c	+1	reviewed	splice_site_del	c.546+1_546+1	e4+1	1.000:1.000:0.985:0.992	-	-	-	no_errors
CD69	969	genome.wustl.edu	37	12	9907797	9907797	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	9907797	9907797	G	C	SNP	CD69	NM_001781.2	human	genbank	58_37c	-1	reviewed	missense	c.248	p.S83C	0.091	NULL	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	-	no_errors
CDK16	0	genome.wustl.edu	37	X	47086098	47086098	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	X	47086098	47086098	A	C	SNP	CDK16	NM_033018.3	human	genbank	58_37c	+1	reviewed	missense	c.1051	p.M351L	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CDKN1B	1027	genome.wustl.edu	37	12	12871175	12871175	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	12871175	12871175	G	-	DEL	CDKN1B	NM_004064.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.402	p.T135fs	1.000	NULL	HMMPfam_CDI	-	no_errors
CNTNAP4	85445	genome.wustl.edu	37	16	76572193	76572193	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	16	76572193	76572193	G	A	SNP	CNTNAP4	NM_138994.3	human	genbank	58_37c	+1	validated	missense	c.2957	p.S986N	1.000	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00282,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
CYBB	1536	genome.wustl.edu	37	X	37665784	37665784	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	X	37665784	37665784	C	T	SNP	CYBB	NM_000397.3	human	genbank	58_37c	+1	reviewed	nonsense	c.1459	p.Q487*	1.000	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	HMMPfam_FAD_binding_8,HMMPfam_NAD_binding_6,HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
CYP26A1	1592	genome.wustl.edu	37	10	94836315	94836315	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	10	94836315	94836315	G	C	SNP	CYP26A1	NM_000783.3	human	genbank	58_37c	+1	reviewed	missense	c.1014	p.K338N	0.996	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DICER1	23405	genome.wustl.edu	37	14	95560349	95560349	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	14	95560349	95560349	G	A	SNP	DICER1	NM_030621.3	human	genbank	58_37c	-1	reviewed	missense	c.5240	p.S1747L	1.000	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,superfamily_RNase_III	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,PatternScan_RNASE_3_1,superfamily_RNase_III,HMMPfam_dsrm,HMMSmart_DSRM,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_PAZ,HMMPfam_dsRNA_bind,HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF101690,superfamily_SSF52540,superfamily_SSF54768	-	no_errors
DMD	1756	genome.wustl.edu	37	X	32382795	32382795	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	X	32382795	32382795	C	T	SNP	DMD	NM_004006.2	human	genbank	58_37c	-1	reviewed	silent	c.5058	p.Q1686	1.000	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,superfamily_Prefoldin,superfamily_t-snare proteins,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
DMXL1	1657	genome.wustl.edu	37	5	118525430	118525430	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	5	118525430	118525430	A	G	SNP	DMXL1	NM_005509.4	human	genbank	58_37c	+1	validated	missense	c.7163	p.K2388R	1.000	NULL	PatternScan_SUBTILASE_ASP,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
DNAH11	8701	genome.wustl.edu	37	7	21730485	21730485	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	7	21730485	21730485	C	T	SNP	DNAH11	NM_003777.3	human	genbank	58_37c	+1	reviewed	silent	c.6048	p.L2016	1.000	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000185182	0	genome.wustl.edu	37	15	22709084	22709084	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	15	22709084	22709084	G	A	SNP	GOLGA8DP	ENST00000341390	human	ensembl	58_37c	-1	known	missense	c.415	p.R139W	0.891	NULL	NULL	-	no_errors
ENSG00000210196	0	genome.wustl.edu	37	MT	16019	16019	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	MT	16019	16019	C	A	SNP	ENSG00000210196	ENST00000387461	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
EVI5	7813	genome.wustl.edu	37	1	93168985	93168985	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	93168985	93168985	G	C	SNP	EVI5	NM_005665.4	human	genbank	58_37c	-1	validated	missense	c.663	p.S221R	1.000	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
FAH	2184	genome.wustl.edu	37	15	80454614	80454614	+	Missense_Mutation	SNP	C	C	T	rs147946196	by1000genomes	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	15	80454614	80454614	C	T	SNP	FAH	NM_000137.1	human	genbank	58_37c	+1	reviewed	missense	c.391	p.R131W	0.801	HMMPfam_FAA_hydrolase,superfamily_FAH	HMMPfam_FAA_hydrolase,superfamily_FAH,HMMPfam_DUF1969,superfamily_Fumarylacetoacetate hydrolase FAH N-terminal domain	-	no_errors
FAM179A	165186	genome.wustl.edu	37	2	29259479	29259479	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	2	29259479	29259479	G	A	SNP	FAM179A	NM_199280.2	human	genbank	58_37c	+1	validated	missense	c.2491	p.A831T	0.007	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
FBN1	2200	genome.wustl.edu	37	15	48818433	48818433	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	15	48818433	48818433	G	A	SNP	FBN1	NM_000138.4	human	genbank	58_37c	-1	reviewed	silent	c.882	p.T294	0.822	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FBXL13	222235	genome.wustl.edu	37	7	102603988	102603988	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	7	102603988	102603988	C	T	SNP	FBXL13	NM_145032.3	human	genbank	58_37c	-1	validated	missense	c.716	p.R239K	0.021	superfamily_RNI-like	HMMPfam_F-box,HMMSmart_SM00367,superfamily_RNI-like	-	no_errors
FHL1	2273	genome.wustl.edu	37	X	135291482	135291482	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	X	135291482	135291482	C	T	SNP	FHL1	ENST00000345434	human	ensembl	58_37c	+1	known	missense	c.769	p.L257F	1.000	NULL	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
FNBP1	23048	genome.wustl.edu	37	9	132689621	132689621	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	9	132689621	132689621	C	T	SNP	FNBP1	NM_015033.2	human	genbank	58_37c	-1	reviewed	splice_site	c.643-1	e8-1	1.000	-	-	-	no_errors
GLE1	2733	genome.wustl.edu	37	9	131277847	131277847	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	9	131277847	131277847	C	T	SNP	GLE1	NM_001003722.1	human	genbank	58_37c	+1	reviewed	nonsense	c.361	p.Q121*	0.471	NULL	HMMPfam_GLE1	-	no_errors
GOLGA3	2802	genome.wustl.edu	37	12	133381492	133381492	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	133381492	133381492	C	A	SNP	GOLGA3	NM_005895.3	human	genbank	58_37c	-1	reviewed	missense	c.1407	p.E469D	0.990	NULL	superfamily_Prefoldin,superfamily_Spectrin repeat	-	no_errors
HIST1H2BK	85236	genome.wustl.edu	37	6	27114440	27114440	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	6	27114440	27114440	C	T	SNP	HIST1H2BK	NM_080593.1	human	genbank	58_37c	-1	reviewed	silent	c.138	p.L46	1.000	HMMSmart_SM00427,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00427,PatternScan_HISTONE_H2B,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
HSD17B13	345275	genome.wustl.edu	37	4	88239546	88239546	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	4	88239546	88239546	C	T	SNP	HSD17B13	NM_178135.3	human	genbank	58_37c	-1	validated	missense	c.253	p.V85I	0.886	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
ING4	51147	genome.wustl.edu	37	12	6762144	6762144	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	6762144	6762144	C	T	SNP	ING4	NM_001127582.1	human	genbank	58_37c	-1	reviewed	missense	c.349	p.E117K	1.000	NULL	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
INHBA	3624	genome.wustl.edu	37	7	41729911	41729911	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	7	41729911	41729911	G	C	SNP	INHBA	NM_002192.2	human	genbank	58_37c	-1	reviewed	silent	c.618	p.L206	0.078	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines	-	no_errors
KRT86	3892	genome.wustl.edu	37	12	52699981	52699981	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	52699981	52699981	G	T	SNP	KRT86	NM_002284.3	human	genbank	58_37c	+1	reviewed	missense	c.1164	p.E388D	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
LCOR	84458	genome.wustl.edu	37	10	98714962	98714962	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	10	98714962	98714962	G	C	SNP	LCOR	NM_032440.3	human	genbank	58_37c	+1	validated	missense	c.585	p.W195C	1.000	NULL	HMMPfam_HTH_psq	-	no_errors
LCP2	3937	genome.wustl.edu	37	5	169720329	169720329	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	5	169720329	169720329	A	G	SNP	LCP2	NM_005565.3	human	genbank	58_37c	-1	reviewed	silent	c.126	p.D42	0.018	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_SH2 domain	-	no_errors
LELP1	149018	genome.wustl.edu	37	1	153177188	153177188	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	153177188	153177188	C	T	SNP	LELP1	NM_001010857.1	human	genbank	58_37c	+1	provisional	missense	c.5	p.S2L	0.999	NULL	NULL	-	no_errors
LOC100131539	0	genome.wustl.edu	37	11	71528103	71528103	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	11	71528103	71528103	C	G	SNP	LOC100131539	XM_001723234.2	human	genbank	58_37c	-1	model	missense	c.358	p.D120H	0.003	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC100287688	0	genome.wustl.edu	37	2	90414180	90414180	+	Missense_Mutation	SNP	A	A	T	rs113891831	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	2	90414180	90414180	A	T	SNP	LOC100287688	XM_002342229.1	human	genbank	58_37c	-1	model	missense	c.77	p.L26H	0.999	NULL	NULL	-	no_errors
LRRK1	79705	genome.wustl.edu	37	15	101566209	101566209	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	15	101566209	101566209	C	T	SNP	LRRK1	NM_024652.3	human	genbank	58_37c	+1	validated	missense	c.2272	p.H758Y	1.000	HMMPfam_Miro,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00219,HMMPfam_LRR_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00220,HMMSmart_SM00369,superfamily_Protein kinase-like (PK-like),HMMPfam_Miro,HMMPfam_Pkinase,HMMSmart_SM00364,superfamily_L domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MIR1304	0	genome.wustl.edu	37	11	93466920	93466921	+	RNA	INS	-	-	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	11	93466920	93466921	-	T	INS	MIR1304	ENST00000408243	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.011:0.009	-	-	-	no_errors
MRGPRD	116512	genome.wustl.edu	37	11	68747936	68747936	+	Missense_Mutation	SNP	G	G	A	rs149242697	byFrequency	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	11	68747936	68747936	G	A	SNP	MRGPRD	NM_198923.2	human	genbank	58_37c	-1	validated	missense	c.520	p.R174W	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
MTIF2	4528	genome.wustl.edu	37	2	55463838	55463840	+	In_Frame_Del	DEL	AAC	AAC	-	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	2	55463838	55463840	AAC	-	DEL	MTIF2	NM_001005369.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.2130_2128	p.V710in_frame_del	0.995:0.997:0.854	superfamily_Translat_factor	PatternScan_IF2,HMMPfam_GTP_EFTU,HMMPfam_GTP_EFTU_D2,superfamily_Translat_factor,superfamily_SSF52156,superfamily_SSF52540	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9058646	9058646	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	19	9058646	9058646	T	C	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	silent	c.28800	p.T9600	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9059401	9059401	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	19	9059401	9059401	T	C	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.28045	p.T9349A	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MYO3A	53904	genome.wustl.edu	37	10	26462851	26462851	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	10	26462851	26462851	G	T	SNP	MYO3A	NM_017433.4	human	genbank	58_37c	+1	reviewed	missense	c.3658	p.D1220Y	0.017	superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52540	-	no_errors
OR51A4	401666	genome.wustl.edu	37	11	4967817	4967817	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	11	4967817	4967817	T	A	SNP	OR51A4	NM_001005329.1	human	genbank	58_37c	-1	provisional	nonsense	c.514	p.K172*	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PARP1	142	genome.wustl.edu	37	1	226561965	226561965	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	226561965	226561965	C	G	SNP	PARP1	NM_001618.3	human	genbank	58_37c	-1	reviewed	missense	c.2032	p.D678H	1.000	HMMPfam_PARP_reg,superfamily_Domain of poly(ADP-ribose) polymerase	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMPfam_zf-PARP,PatternScan_PARP_ZN_FINGER_1,HMMPfam_PARP_reg,superfamily_Domain of poly(ADP-ribose) polymerase,HMMPfam_WGR,HMMSmart_SM00773,HMMPfam_PARP,HMMPfam_PADR1,superfamily_ADP-ribosylation,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
PAX2	5076	genome.wustl.edu	37	10	102587349	102587353	+	Frame_Shift_Del	DEL	TGCTG	TGCTG	-	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	TGCTG	TGCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	10	102587349	102587353	TGCTG	-	DEL	PAX2	ENST00000370294	human	ensembl	58_37c	+1	known	frame_shift_del	c.1227_1231	p.A410fs	1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_PAX,HMMSmart_SM00351,PatternScan_PAIRED_1,superfamily_Homeodomain-like	-	no_errors
PDK4	5166	genome.wustl.edu	37	7	95216806	95216806	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	7	95216806	95216806	A	C	SNP	PDK4	NM_002612.3	human	genbank	58_37c	-1	reviewed	missense	c.905	p.I302S	1.000	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain	-	no_errors
PID1	55022	genome.wustl.edu	37	2	230020681	230020681	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	2	230020681	230020681	C	T	SNP	PID1	NM_017933.4	human	genbank	58_37c	-1	validated	splice_site	c.124-1	e2-1	1.000	-	-	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	G	G			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIWIL1	9271	genome.wustl.edu	37	12	130847321	130847321	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	130847321	130847321	C	T	SNP	PIWIL1	NM_004764.3	human	genbank	58_37c	+1	reviewed	missense	c.1981	p.R661C	0.984	HMMPfam_Piwi,superfamily_Ribonuclease H-like	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like,superfamily_PAZ domain	-	no_errors
PSG1	5669	genome.wustl.edu	37	19	43373185	43373185	+	Silent	SNP	C	C	T	rs4030951	byCluster	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	19	43373185	43373185	C	T	SNP	PSG1	NM_006905.2	human	genbank	58_37c	-1	validated	silent	c.711	p.P237	0.431	superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
RAB28	9364	genome.wustl.edu	37	4	13383134	13383134	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	4	13383134	13383134	G	A	SNP	RAB28	ENST00000504644	human	ensembl	58_37c	-1	known	nonsense	c.85	p.Q29*	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
RASGEF1C	255426	genome.wustl.edu	37	5	179545842	179545842	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	5	179545842	179545842	G	A	SNP	RASGEF1C	NM_175062.3	human	genbank	58_37c	-1	validated	missense	c.932	p.S311F	1.000	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF	HMMPfam_RasGEF_N,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF	-	no_errors
RBM25	58517	genome.wustl.edu	37	14	73572680	73572680	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	14	73572680	73572680	G	A	SNP	RBM25	NM_021239.2	human	genbank	58_37c	+1	validated	missense	c.1268	p.R423Q	0.845	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_PWI,HMMSmart_SM00311,superfamily_PWI domain,superfamily_RNA-binding domain RBD	-	no_errors
RYR3	6263	genome.wustl.edu	37	15	34130404	34130404	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	15	34130404	34130404	G	A	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	missense	c.12223	p.E4075K	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SATL1	340562	genome.wustl.edu	37	X	84349940	84349940	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	X	84349940	84349940	C	T	SNP	SATL1	NM_001012980.2	human	genbank	58_37c	-1	validated	missense	c.1195	p.D399N	0.000	superfamily_Acyl_CoA_acyltransferase	superfamily_Acyl_CoA_acyltransferase	-	no_errors
SLC25A14	9016	genome.wustl.edu	37	X	129474326	129474326	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	X	129474326	129474326	G	T	SNP	SLC25A14	NM_003951.2	human	genbank	58_37c	+1	reviewed	missense	c.74	p.G25V	1.000	NULL	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
SLC30A5	64924	genome.wustl.edu	37	5	68419204	68419204	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	5	68419204	68419204	G	C	SNP	SLC30A5	ENST00000511158	human	ensembl	58_37c	+1	known	nonstop	c.35	p.*12S	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SLC31A1	1317	genome.wustl.edu	37	9	116018517	116018517	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	9	116018517	116018517	C	T	SNP	SLC31A1	NM_001859.3	human	genbank	58_37c	+1	validated	missense	c.89	p.S30L	0.217	NULL	HMMPfam_Ctr	-	no_errors
SLCO1C1	53919	genome.wustl.edu	37	12	20893300	20893300	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	20893300	20893300	G	A	SNP	SLCO1C1	NM_017435.4	human	genbank	58_37c	+1	reviewed	silent	c.1731	p.L577	1.000	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter	HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895	-	no_errors
SORBS1	10580	genome.wustl.edu	37	10	97096417	97096417	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	10	97096417	97096417	G	C	SNP	SORBS1	NM_001034954.1	human	genbank	58_37c	-1	validated	nonsense	c.3500	p.S1167*	0.983	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Sorb,HMMSmart_SM00459	-	no_errors
SPPL2A	84888	genome.wustl.edu	37	15	51024842	51024842	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	15	51024842	51024842	G	C	SNP	SPPL2A	NM_032802.3	human	genbank	58_37c	-1	reviewed	missense	c.972	p.F324L	1.000	HMMSmart_SM00730,HMMPfam_Peptidase_A22B	HMMPfam_PA,HMMSmart_SM00730,HMMPfam_Peptidase_A22B,superfamily_Transferrin receptor ectodomain apical domain	-	no_errors
SUSD4	55061	genome.wustl.edu	37	1	223408322	223408322	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	223408322	223408322	G	A	SNP	SUSD4	NM_001037175.2	human	genbank	58_37c	-1	validated	missense	c.845	p.S282L	0.003	NULL	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	-	no_errors
TBX6	6911	genome.wustl.edu	37	16	30097589	30097589	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	16	30097589	30097589	G	A	SNP	TBX6	NM_004608.3	human	genbank	58_37c	-1	reviewed	missense	c.1268	p.A423V	0.211	NULL	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
TMOD4	29765	genome.wustl.edu	37	1	151143396	151143396	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	151143396	151143396	C	T	SNP	TMOD4	NM_013353.2	human	genbank	58_37c	-1	validated	silent	c.870	p.Q290	1.000	HMMPfam_Tropomodulin,superfamily_RNI-like	HMMPfam_Tropomodulin,superfamily_RNI-like	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577568	7577568	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	17	7577568	7577568	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.713	p.C238Y	1.000	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TPTE2	93492	genome.wustl.edu	37	13	20048120	20048120	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	13	20048120	20048120	C	T	SNP	TPTE2	NM_199254.2	human	genbank	58_37c	-1	validated	missense	c.326	p.R109H	0.000	superfamily_Voltage-gated potassium channels	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_Voltage-gated potassium channels	-	no_errors
TRPM4	54795	genome.wustl.edu	37	19	49674925	49674925	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	19	49674925	49674925	G	A	SNP	TRPM4	NM_017636.2	human	genbank	58_37c	+1	provisional	missense	c.949	p.D317N	1.000	NULL	HMMPfam_Ion_trans	-	no_errors
UBE2J1	51465	genome.wustl.edu	37	6	90039635	90039636	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	6	90039635	90039636	-	G	INS	UBE2J1	NM_016021.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.720_719	p.T241fs	0.004:0.007	NULL	HMMPfam_UQ_con,HMMSmart_UBCc,PatternScan_UBIQUITIN_CONJUGAT_1,superfamily_UBQ-conjugat/RWD-like	-	no_errors
UBN1	29855	genome.wustl.edu	37	16	4920875	4920875	+	Silent	SNP	G	G	A	rs138336007	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	16	4920875	4920875	G	A	SNP	UBN1	NM_001079514.1	human	genbank	58_37c	+1	validated	silent	c.1461	p.Q487	1.000	NULL	NULL	-	no_errors
UBR1	197131	genome.wustl.edu	37	15	43282235	43282235	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	15	43282235	43282235	C	T	SNP	UBR1	NM_174916.2	human	genbank	58_37c	-1	reviewed	missense	c.3841	p.E1281K	1.000	NULL	HMMPfam_zf-UBR,HMMPfam_ClpS,HMMSmart_SM00396,superfamily_ClpS-like,PatternScan_RIBOSOMAL_S16	-	no_errors
UQCR10	0	genome.wustl.edu	37	22	30163499	30163499	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	22	30163499	30163499	C	T	SNP	UQCR10	NM_013387.3	human	genbank	58_37c	+1	validated	nonsense	c.112	p.Q38*	0.997	HMMPfam_UCR_UQCRX_QCR9,superfamily_Ubiquinol_cytC_Reductase_QCR9	HMMPfam_UCR_UQCRX_QCR9,superfamily_Ubiquinol_cytC_Reductase_QCR9	-	no_errors
WDR11	55717	genome.wustl.edu	37	10	122649430	122649430	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	10	122649430	122649430	G	C	SNP	WDR11	NM_018117.11	human	genbank	58_37c	+1	reviewed	missense	c.2252	p.W751S	1.000	HMMSmart_WD40,superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
WDR82	80335	genome.wustl.edu	37	3	52293228	52293228	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	3	52293228	52293228	G	A	SNP	WDR82	NM_025222.3	human	genbank	58_37c	-1	validated	nonsense	c.754	p.Q252*	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ZEB2	9839	genome.wustl.edu	37	2	145147374	145147374	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	2	145147374	145147374	C	T	SNP	ZEB2	NM_014795.3	human	genbank	58_37c	-1	reviewed	missense	c.3289	p.E1097K	1.000	NULL	HMMSmart_HOX,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1,superfamily_SSF57667	-	no_errors
ZHX2	22882	genome.wustl.edu	37	8	123963911	123963911	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	8	123963911	123963911	C	G	SNP	ZHX2	NM_014943.3	human	genbank	58_37c	+1	reviewed	missense	c.161	p.S54C	0.998	NULL	HMMPfam_Homeobox,HMMSmart_HOX,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1	-	no_errors
ZHX2	22882	genome.wustl.edu	37	8	123964167	123964167	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	8	123964167	123964167	C	G	SNP	ZHX2	NM_014943.3	human	genbank	58_37c	+1	reviewed	missense	c.417	p.F139L	1.000	NULL	HMMPfam_Homeobox,HMMSmart_HOX,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1	-	no_errors
ZNF682	91120	genome.wustl.edu	37	19	20117297	20117297	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	19	20117297	20117297	C	T	SNP	ZNF682	NM_033196.2	human	genbank	58_37c	-1	validated	silent	c.1014	p.E338	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
