Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
ARID4B	0	genome.wustl.edu	36	1	233412089	233412089	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	1	233412089	233412089	T	A	SNP	ARID4B	NM_016374.5	human	genbank	54_36p	-1	reviewed	missense	c.2768	p.D923V	1	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00333,HMMPfam_RBB1NT	-	no_errors	109	7	6.03	58	72	55.38	NA	NA	NA
ENSG00000124399	0	genome.wustl.edu	36	4	43595902	43595902	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	4	43595902	43595902	G	A	SNP	ENSG00000124399	ENST00000244249	human	ensembl	54_36p	1	known	missense	c.167	p.R56H	0.091	HMMPfam_NDUF_B4	HMMPfam_NDUF_B4	-	no_start_codon	57	6	9.52	68	55	44.72	NA	NA	NA
CHIC2	0	genome.wustl.edu	36	4	54575000	54575000	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	4	54575000	54575000	C	T	SNP	CHIC2	NM_012110.2	human	genbank	54_36p	-1	reviewed	missense	c.374	p.R125K	1	HMMPfam_Erf4	HMMPfam_Erf4	-	no_errors	74	14	15.91	39	53	57.61	NA	NA	NA
FAT4	0	genome.wustl.edu	36	4	126556077	126556077	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	4	126556077	126556077	G	A	SNP	FAT4	NM_024582.4	human	genbank	54_36p	1	validated	missense	c.6509	p.G2170E	1	HMMPfam_Cadherin,superfamily_Cadherin	PatternScan_ASX_HYDROXYL,HMMSmart_LamG,HMMSmart_EGF_CA,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_EGF,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_Cadherin,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors	44	0	0	41	24	36.92	NA	NA	NA
MAP1B	0	genome.wustl.edu	36	5	71531412	71531412	+	Silent	SNP	C	C	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	5	71531412	71531412	C	A	SNP	MAP1B	NM_005909.3	human	genbank	54_36p	1	validated	silent	c.6474	p.T2158	0.567	NULL	HMMPfam_MAP1B_neuraxin,PatternScan_MAP1B_NEURAXIN	-	no_errors	102	11	9.73	94	89	48.63	NA	NA	NA
VCAN	0	genome.wustl.edu	36	5	82868814	82868814	+	Silent	SNP	T	T	C			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	5	82868814	82868814	T	C	SNP	VCAN	NM_004385.1	human	genbank	54_36p	1	validated	silent	c.4236	p.N1412	0.996	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMSmart_SM00179,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_V-set,superfamily_Complement control module/SCR domain,superfamily_C-type lectin-like,PatternScan_EGF_CA,PatternScan_C_TYPE_LECTIN_1,superfamily_Immunoglobulin,superfamily_EGF/Laminin	-	no_errors	103	18	14.88	77	92	54.44	NA	NA	NA
PCDHB1	0	genome.wustl.edu	36	5	140413379	140413379	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	5	140413379	140413379	G	A	SNP	PCDHB1	NM_013340.2	human	genbank	54_36p	1	reviewed	missense	c.2140	p.V714I	0.032	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors	82	11	11.83	71	57	44.53	NA	NA	NA
PLG	0	genome.wustl.edu	36	6	161055850	161055850	+	Silent	SNP	C	C	T			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	6	161055850	161055850	C	T	SNP	PLG	NM_000301.2	human	genbank	54_36p	1	validated	silent	c.582	p.D194	0.917	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like	HMMPfam_Kringle,HMMSmart_KR,HMMPfam_Trypsin,HMMSmart_Tryp_SPc,HMMPfam_PAN_1,HMMSmart_PAN_AP,superfamily_Pept_Ser_Cys,superfamily_Kringle-like,PatternScan_KRINGLE_1,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,superfamily_SSF57414	-	no_errors	69	7	9.21	51	79	60.77	NA	NA	NA
KCNU1	0	genome.wustl.edu	36	8	36895547	36895547	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	8	36895547	36895547	G	A	SNP	KCNU1	NM_001031836.2	human	genbank	54_36p	1	validated	missense	c.2570	p.R857Q	0.781	NULL	HMMPfam_BK_channel_a,HMMPfam_Ion_trans,superfamily_NAD(P)-bd,superfamily_SSF81324	-	no_errors	140	15	9.68	138	92	39.83	NA	NA	NA
MTA2	0	genome.wustl.edu	36	11	62120701	62120701	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	11	62120701	62120701	T	C	SNP	MTA2	NM_004739.2	human	genbank	54_36p	-1	reviewed	missense	c.866	p.D289G	1	HMMSmart_SANT,HMMPfam_Myb_DNA-binding	HMMPfam_GATA,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_ELM2,HMMSmart_SANT,HMMPfam_BAH,HMMSmart_BAH,HMMPfam_Myb_DNA-binding,superfamily_SSF57716	-	no_errors	283	36	11.21	161	108	40.15	NA	NA	NA
CBX5	0	genome.wustl.edu	36	12	52937580	52937580	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	12	52937580	52937580	C	T	SNP	CBX5	NM_012117.1	human	genbank	54_36p	-1	reviewed	nonsense	c.122	p.W41*	1	HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,superfamily_Chromo domain-like	HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,HMMPfam_Chromo_shadow,superfamily_Chromo domain-like,HMMSmart_SM00300	-	no_errors	65	13	16.67	90	71	44.1	NA	NA	NA
KCNK13	0	genome.wustl.edu	36	14	89721002	89721002	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	14	89721002	89721002	C	A	SNP	KCNK13	NM_022054.2	human	genbank	54_36p	1	reviewed	missense	c.1129	p.Q377K	0.625	NULL	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels	-	no_errors	16	1	5.88	24	17	41.46	NA	NA	NA
NECAB2	0	genome.wustl.edu	36	16	82585470	82585470	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	16	82585470	82585470	C	T	SNP	NECAB2	NM_019065.2	human	genbank	54_36p	1	provisional	missense	c.659	p.A220V	0.001	NULL	HMMSmart_EFh,HMMPfam_ABM,superfamily_Dimer_A_B_barrel,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors	40	2	4.76	51	48	48.48	NA	NA	NA
LOC401218	0	genome.wustl.edu	36	5	172122401	172122402	+	RNA	INS	-	-	AG	rs57435005		TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	-	-	-	AG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	5	172122401	172122402	-	AG	INS	LOC401218	XR_042344.1	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene	131	2	1.5	31	22	41.51	NA	NA	NA
FLT3	0	genome.wustl.edu	36	13	27506275	27506276	+	In_Frame_Ins	INS	-	-	AATCAACGTAGAAGTACTCATTATCTTCCGGGG			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	-	-	-	AATCAACGTAGAAGTACTCATTATCTTCCGGGG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	13	27506275	27506276	-	AATCAACGTAGAAGTACTCATTATCTTCCGGGG	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1781_1780	p.594in_frame_insSPEDNEYFYVD	1.000:1.000	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
KIAA1683	0	genome.wustl.edu	36	19	18237111	18237112	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	-	-	-	C	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0eb1f4d2-4a5e-4faf-9652-d90f21cc03c8	61430182-d37f-40e8-a096-0cb3cb7b8d7b	19	18237111	18237112	-	C	INS	KIAA1683	NM_025249.1	human	genbank	54_36p	-1	validated	frame_shift_ins	c.2239_2238	p.Q746fs	0.000:0.000	NULL	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	14	0	0	44	26	37.14	NA	NA	NA
