Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
LOC100129876	0	genome.wustl.edu	36	X	55215216	55215216	+	Silent	SNP	G	G	A			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	X	55215216	55215216	G	A	SNP	LOC100129876	XM_001715675.1	human	genbank	54_36p	1	model	silent	c.105	p.E35	0.007	NULL	HMMPfam_GAGE	-	no_errors	238	3	1.24	21	146	87.43	NA	NA	NA
RBMX	0	genome.wustl.edu	36	X	135789240	135789240	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	X	135789240	135789240	C	A	SNP	RBMX	NM_002139.2	human	genbank	54_36p	-1	reviewed	missense	c.13	p.D5Y	1	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RBM1CTR,superfamily_RNA-binding domain RBD	-	no_errors	284	8	2.739726027	37	240	86.64259928	8	143	94.08
TP73	0	genome.wustl.edu	36	1	3628599	3628599	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	1	3628599	3628599	C	T	SNP	TP73	NM_005427.1	human	genbank	54_36p	1	reviewed	missense	c.584	p.P195L	1	superfamily_p53-like transcription factors,HMMPfam_P53	HMMSmart_SM00454,PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,HMMPfam_P53	-	no_errors	473	7	1.458333333	272	207	43.21503132	NA	NA	NA
GBP4	0	genome.wustl.edu	36	1	89433568	89433568	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	1	89433568	89433568	C	A	SNP	GBP4	NM_052941.4	human	genbank	54_36p	-1	validated	missense	c.363	p.K121N	1	HMMPfam_GBP,superfamily_SSF52540	HMMPfam_GBP_C,HMMPfam_GBP,superfamily_GBP,superfamily_SSF52540	-	no_errors	572	1	0.17452007	650	9	1.365705615	35	0	0
ARHGEF2	0	genome.wustl.edu	36	1	154189110	154189110	+	Silent	SNP	G	G	T			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	1	154189110	154189110	G	T	SNP	ARHGEF2	NM_004723.2	human	genbank	54_36p	-1	reviewed	silent	c.1833	p.G611	0.971	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	no_errors	558	8	1.41	294	238	44.65	48	57	54.29
LGTN	0	genome.wustl.edu	36	1	204839488	204839488	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	1	204839488	204839488	T	C	SNP	LGTN	NM_006893.2	human	genbank	54_36p	-1	reviewed	missense	c.1154	p.Y385C	1	superfamily_SWIB/MDM2 domain	HMMPfam_SUI1,superfamily_eIF1-like,HMMSmart_SM00359,superfamily_SWIB/MDM2 domain,superfamily_PUA domain-like	-	no_errors	539	11	2	335	305	47.51	47	50	51.55
DDX1	0	genome.wustl.edu	36	2	15674817	15674817	+	Splice_Site	SNP	A	A	G			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	2	15674817	15674817	A	G	SNP	DDX1	NM_004939.1	human	genbank	54_36p	1	reviewed	splice_site	c.1018-2	e15-2	0.994	-	-	-	no_errors	547	10	1.795332136	383	335	46.65738162	0	3	100
ATG16L1	0	genome.wustl.edu	36	2	233837397	233837397	+	Silent	SNP	C	C	T			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	2	233837397	233837397	C	T	SNP	ATG16L1	NM_030803.3	human	genbank	54_36p	1	validated	silent	c.336	p.D112	1	superfamily_WD40 repeat-like,HMMPfam_ATG16	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_ATG16,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors	637	10	1.545595054	366	297	44.79638009	29	6	17.14
HJURP	0	genome.wustl.edu	36	2	234415280	234415280	+	Silent	SNP	G	G	A			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	2	234415280	234415280	G	A	SNP	HJURP	NM_018410.3	human	genbank	54_36p	-1	validated	silent	c.885	p.S295	0	NULL	NULL	-	no_errors	675	4	0.58910162	450	331	42.3815621	15	9	37.5
FBN2	0	genome.wustl.edu	36	5	127725400	127725400	+	Silent	SNP	G	G	A			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	5	127725400	127725400	G	A	SNP	FBN2	NM_001999.3	human	genbank	54_36p	-1	reviewed	silent	c.2469	p.N823	0.992	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors	1154	9	0.773860705	640	498	43.76098418	2	0	0
PCDHA13	0	genome.wustl.edu	36	5	140243210	140243210	+	Silent	SNP	G	G	A			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	5	140243210	140243210	G	A	SNP	PCDHA13	NM_018904.2	human	genbank	54_36p	1	reviewed	silent	c.1173	p.P391	0	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors	758	11	1.430429129	446	379	45.93939394	NA	NA	NA
PCDHGC4	0	genome.wustl.edu	36	5	140846278	140846278	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	5	140846278	140846278	C	G	SNP	PCDHGC4	NM_018928.2	human	genbank	54_36p	1	reviewed	missense	c.1354	p.P452A	0.999	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors	930	15	1.587301587	540	360	40	12	13	52
DDX41	0	genome.wustl.edu	36	5	176872959	176872959	+	Splice_Site	SNP	C	C	T			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	5	176872959	176872959	C	T	SNP	DDX41	NM_016222.2	human	genbank	54_36p	-1	reviewed	splice_site	c.1230+1	e11+1	1	-	-	-	no_errors	675	3	0.442477876	556	149	21.13475177	8	3	27.27
EZR	0	genome.wustl.edu	36	6	159108034	159108034	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	6	159108034	159108034	T	C	SNP	EZR	NM_003379.1	human	genbank	54_36p	-1	reviewed	missense	c.1661	p.H554R	1	superfamily_Moesin,HMMPfam_ERM	superfamily_Moesin,HMMPfam_ERM,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF54236	-	no_errors	687	5	0.72	558	443	44.21	72	58	44.62
RP1L1	0	genome.wustl.edu	36	8	10506675	10506675	+	Silent	SNP	G	G	A			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	8	10506675	10506675	G	A	SNP	RP1L1	NM_178857.5	human	genbank	54_36p	-1	validated	silent	c.2343	p.S781	0.026	NULL	HMMPfam_DCX,HMMPfam_S-antigen,superfamily_SSF89837	-	no_errors	338	4	1.169590643	187	146	43.84384384	NA	NA	NA
RP1	0	genome.wustl.edu	36	8	55700208	55700208	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	8	55700208	55700208	G	A	SNP	RP1	ENST00000220676	human	ensembl	54_36p	1	known	missense	c.1213	p.A405T	0	NULL	HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837	-	no_errors	688	11	1.573676681	489	376	43.46820809	NA	NA	NA
CNTLN	0	genome.wustl.edu	36	9	17216283	17216283	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	9	17216283	17216283	C	T	SNP	CNTLN	NM_017738.1	human	genbank	54_36p	1	validated	nonsense	c.532	p.Q178*	1	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	386	6	1.530612245	257	226	46.79089027	6	9	60
LOC100129901	0	genome.wustl.edu	36	9	87569444	87569444	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	9	87569444	87569444	C	T	SNP	LOC100129901	XM_001716099.1	human	genbank	54_36p	1	model	missense	c.128	p.A43V	0.997	NULL	NULL	-	no_errors	460	11	2.335456476	275	214	43.76278119	1	0	0
COL27A1	0	genome.wustl.edu	36	9	116084387	116084387	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	9	116084387	116084387	G	A	SNP	COL27A1	NM_032888.2	human	genbank	54_36p	1	provisional	missense	c.3727	p.G1243R	1	HMMPfam_Collagen	HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors	429	6	1.379310345	285	196	40.74844075	NA	NA	NA
OR1J2	0	genome.wustl.edu	36	9	124312959	124312959	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	9	124312959	124312959	C	T	SNP	OR1J2	NM_054107.1	human	genbank	54_36p	1	provisional	missense	c.58	p.R20W	0.002	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	891	8	0.89	608	449	42.4	NA	NA	NA
P2RY2	0	genome.wustl.edu	36	11	72623244	72623244	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	11	72623244	72623244	G	T	SNP	P2RY2	NM_002564.2	human	genbank	54_36p	1	reviewed	missense	c.392	p.R131L	1	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	798	3	0.37	278	242	46.54	5	6	54.55
DRD2	0	genome.wustl.edu	36	11	112788535	112788535	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	11	112788535	112788535	G	A	SNP	DRD2	NM_000795.3	human	genbank	54_36p	-1	reviewed	missense	c.1091	p.S364F	1	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	661	8	1.195814649	483	353	42.22488038	NA	NA	NA
DAZAP2	0	genome.wustl.edu	36	12	49922439	49922439	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	12	49922439	49922439	A	G	SNP	DAZAP2	NM_014764.1	human	genbank	54_36p	1	reviewed	missense	c.437	p.N146S	1	NULL	NULL	-	no_errors	1029	5	0.48	505	419	45.35	202	152	42.94
TMEM132C	0	genome.wustl.edu	36	12	127744443	127744443	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	12	127744443	127744443	G	A	SNP	TMEM132C	ENST00000315208	human	ensembl	54_36p	1	known	nonsense	c.414	p.W138*	1	NULL	NULL	-	no_errors	523	4	0.76	352	237	40.24	NA	NA	NA
DCLK1	0	genome.wustl.edu	36	13	35326695	35326695	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	13	35326695	35326695	G	A	SNP	DCLK1	NM_004734.3	human	genbank	54_36p	-1	validated	missense	c.976	p.R326C	0.998	NULL	HMMSmart_S_TKc,HMMPfam_DCX,HMMSmart_DCX,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF89837	-	no_errors	399	0	0	537	3	0.555555556	2	0	0
IDH2	0	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	A	rs121913502		TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	15	88432938	88432938	C	A	SNP	IDH2	NM_002168.2	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140L	1	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	740	12	1.595744681	381	307	44.62209302	155	138	47.1
ITGAX	0	genome.wustl.edu	36	16	31290499	31290499	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	16	31290499	31290499	C	T	SNP	ITGAX	NM_000887.3	human	genbank	54_36p	1	reviewed	missense	c.2053	p.R685C	1	HMMPfam_Integrin_alpha2,superfamily_SSF69179	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF53300,superfamily_SSF69179,superfamily_SSF69318	-	no_errors	952	28	2.85	283	236	45.3	16	25	60.98
MIR632	0	genome.wustl.edu	36	17	27701282	27701282	+	RNA	SNP	C	C	A			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	17	27701282	27701282	C	A	SNP	MIRN632	ENST00000385193	human	ensembl	54_36p	1	known	rna	NULL	NULL	0.749	-	-	-	no_errors	320	0	0	361	5	1.366120219	15	0	0
MIR142	0	genome.wustl.edu	36	17	53763621	53763621	+	RNA	SNP	C	C	G			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	17	53763621	53763621	C	G	SNP	MIRN142	ENST00000384835	human	ensembl	54_36p	-1	known	rna	NULL	NULL	1	-	-	-	no_errors	1707	17	0.98	169	138	44.95	29	4	11.76
MIR142	0	genome.wustl.edu	36	17	53763624	53763624	+	RNA	SNP	T	T	C			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	17	53763624	53763624	T	C	SNP	MIRN142	ENST00000384835	human	ensembl	54_36p	-1	known	rna	NULL	NULL	1	-	-	-	no_errors	1692	14	0.82	181	121	40.07	5	25	83.33
MYO1F	0	genome.wustl.edu	36	19	8512789	8512789	+	Splice_Site	SNP	C	C	T			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	19	8512789	8512789	C	T	SNP	MYO1F	NM_012335.2	human	genbank	54_36p	-1	provisional	splice_site	c.1610+1	e15+1	1	-	-	-	no_errors	542	8	1.454545455	319	257	44.61805556	18	11	36.67
ZNF260	0	genome.wustl.edu	36	19	41696897	41696897	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	19	41696897	41696897	A	G	SNP	ZNF260	NM_001012756.1	human	genbank	54_36p	-1	validated	missense	c.1084	p.C362R	0.744	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors	501	0	0	582	7	1.188455008	8	0	0
LOC388553	0	genome.wustl.edu	36	19	50958451	50958451	+	Silent	SNP	C	C	T			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	19	50958451	50958451	C	T	SNP	LOC388553	XM_373809.1	human	genbank	54_36p	1	model	silent	c.1554	p.T518	0.395	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box	HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_HLH,superfamily_HMG-box	-	no_errors	395	2	0.503778338	222	203	47.76470588	NA	NA	NA
NCR1	0	genome.wustl.edu	36	19	60109826	60109826	+	Silent	SNP	C	C	T			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	19	60109826	60109826	C	T	SNP	NCR1	NM_004829.1	human	genbank	54_36p	1	validated	silent	c.204	p.A68	0	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00409,superfamily_Immunoglobulin	-	no_errors	723	0	0	821	10	1.203369434	1	0	0
KCNQ2	0	genome.wustl.edu	36	20	61515246	61515246	+	Splice_Site	SNP	C	C	T			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	20	61515246	61515246	C	T	SNP	KCNQ2	NM_172107.4	human	genbank	54_36p	-1	reviewed	splice_site	c.1763+1	e15+1	1	-	-	-	no_errors	251	9	3.461538462	132	117	46.98795181	0	0	0
LOC441957	0	genome.wustl.edu	36	21	14058883	14058883	+	RNA	SNP	C	C	T			TCGA-AB-3002-03A-01D-0739-09	TCGA-AB-3002-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	320ebe6f-48bd-40f1-9be5-1401a3bff328	f0b052b2-f9c8-48b4-a333-936b3da6f164	21	14058883	14058883	C	T	SNP	LOC441957	XR_016199.1	human	genbank	54_36p	1	model	rna	NULL	NULL	0.375	-	-	-	pseudogene	341	6	1.729106628	230	182	44.17475728	0	0	0
