Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AKAP11	11215	genome.wustl.edu	37	13	42876409	42876409	+	Missense_Mutation	SNP	G	G	A	rs146952263	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	13	42876409	42876409	G	A	SNP	AKAP11	NM_016248.2	human	genbank	58_37c	+1	reviewed	missense	c.3527	p.S1176N	0.996	NULL	NULL	-	no_errors
BRAF	673	genome.wustl.edu	37	7	140439646	140439646	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	7	140439646	140439646	T	C	SNP	BRAF	NM_004333.4	human	genbank	58_37c	-1	reviewed	missense	c.2093	p.K698R	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,HMMPfam_RBD,HMMSmart_SM00455,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Ubiquitin-like,superfamily_Cysteine-rich domain	-	no_errors
CPA2	1358	genome.wustl.edu	37	7	129915037	129915037	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	7	129915037	129915037	C	A	SNP	CPA2	NM_001869.2	human	genbank	58_37c	+1	reviewed	missense	c.535	p.H179N	1.000	HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases	HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2,HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors,superfamily_Zn-dependent exopeptidases	-	no_errors
CSMD2	114784	genome.wustl.edu	37	1	34123560	34123560	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	1	34123560	34123560	G	A	SNP	CSMD2	NM_052896.3	human	genbank	58_37c	-1	validated	missense	c.4313	p.P1438L	1.000	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain	-	no_errors
ELN	2006	genome.wustl.edu	37	7	73452051	73452051	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	7	73452051	73452051	G	C	SNP	ELN	NM_000501.2	human	genbank	58_37c	+1	reviewed	missense	c.178	p.G60R	1.000	NULL	PatternScan_ENDONUCLEASE_III_2,PatternScan_HEXAPEP_TRANSFERASES	-	no_errors
ENSG00000246438	0	genome.wustl.edu	37	16	1470627	1470628	+	RNA	INS	-	-	G	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	16	1470627	1470628	-	G	INS	C16orf91	NM_001010878.1	human	genbank	58_37c	-1	provisional	intronic	c.504-15_504-14	e4-14	0.007:0.029	-	-	-	no_errors
ENSG00000247428	0	genome.wustl.edu	37	16	23424711	23424711	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	16	23424711	23424711	C	G	SNP	COG7	NM_153603.3	human	genbank	58_37c	-1	reviewed	intronic	c.1409+58	e10+58	0.000	-	-	-	no_errors
ESRP2	80004	genome.wustl.edu	37	16	68266395	68266395	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	16	68266395	68266395	G	T	SNP	ESRP2	NM_024939.2	human	genbank	58_37c	-1	validated	missense	c.833	p.A278E	1.000	superfamily_SSF54928	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
FGF9	2254	genome.wustl.edu	37	13	22255226	22255226	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	13	22255226	22255226	G	A	SNP	FGF9	NM_002010.2	human	genbank	58_37c	+1	reviewed	missense	c.323	p.R108Q	1.000	HMMPfam_FGF,HMMSmart_SM00442,superfamily_Cytokine	HMMPfam_FGF,HMMSmart_SM00442,PatternScan_HBGF_FGF,superfamily_Cytokine	-	no_errors
LOC100289444	0	genome.wustl.edu	37	7	27208959	27208959	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	7	27208959	27208959	G	-	DEL	LOC100289444	XM_002342713.1	human	genbank	58_37c	+1	model	frame_shift_del	c.2198	p.L734fs	0.001	NULL	NULL	-	no_errors
LRRN4	164312	genome.wustl.edu	37	20	6025283	6025283	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	20	6025283	6025283	G	A	SNP	LRRN4	NM_152611.3	human	genbank	58_37c	-1	validated	nonsense	c.904	p.Q302*	0.919	superfamily_L domain-like	HMMPfam_LRR_1,HMMSmart_SM00369,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_L domain-like	-	no_errors
MLL3	58508	genome.wustl.edu	37	7	151874090	151874090	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	7	151874090	151874090	G	-	DEL	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.8448	p.T2817fs	0.000	NULL	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
POLR3GL	84265	genome.wustl.edu	37	1	145457994	145457994	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	1	145457994	145457994	C	T	SNP	POLR3GL	NM_032305.1	human	genbank	58_37c	-1	provisional	missense	c.266	p.R89H	1.000	NULL	NULL	-	no_errors
PPP1R3F	89801	genome.wustl.edu	37	X	49126982	49126983	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	X	49126982	49126983	-	G	INS	PPP1R3F	NM_033215.4	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.650_651	p.I217fs	1.000:0.999	HMMPfam_CBM_21	HMMPfam_CBM_21	-	no_errors
PTGFRN	5738	genome.wustl.edu	37	1	117492009	117492009	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	1	117492009	117492009	C	T	SNP	PTGFRN	NM_020440.2	human	genbank	58_37c	+1	provisional	missense	c.1028	p.S343L	0.685	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
RALGAPA2	57186	genome.wustl.edu	37	20	20517353	20517353	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	20	20517353	20517353	G	A	SNP	RALGAPA2	NM_020343.2	human	genbank	58_37c	-1	validated	silent	c.3361	p.L1121	0.836	NULL	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
SLC2A5	6518	genome.wustl.edu	37	1	9101751	9101751	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	1	9101751	9101751	G	A	SNP	SLC2A5	NM_001135585.1	human	genbank	58_37c	-1	validated	missense	c.664	p.L222F	0.000	NULL	HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,superfamily_MFS_gen_substrate_transporter	-	no_errors
SORL1	6653	genome.wustl.edu	37	11	121466411	121466411	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	11	121466411	121466411	G	T	SNP	SORL1	NM_003105.4	human	genbank	58_37c	+1	reviewed	silent	c.4449	p.T1483	0.996	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,superfamily_LDL receptor-like module	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_COPPER_BLUE,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00602,superfamily_Fibronectin type III,PatternScan_EGF_2,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,superfamily_YWTD domain	-	no_errors
TNXB	7148	genome.wustl.edu	37	6	32063513	32063514	+	Frame_Shift_Del	DEL	AC	AC	-	rs144556766	by1000genomes	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	6	32063513	32063514	AC	-	DEL	TNXB	NM_019105.6	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.2117_2116	p.V706fs	0.972:0.989	HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00181,superfamily_Fibronectin type III,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin	-	no_errors
ZNF791	163049	genome.wustl.edu	37	19	12739046	12739046	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	19	12739046	12739046	G	A	SNP	ZNF791	NM_153358.2	human	genbank	58_37c	+1	validated	missense	c.703	p.E235K	0.476	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
