Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABT1	29777	genome.wustl.edu	37	6	26598210	26598210	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	6	26598210	26598210	G	T	SNP	ABT1	NM_013375.2	human	genbank	58_37c	+1	reviewed	missense	c.310	p.D104Y	1.000	superfamily_SSF54928	superfamily_SSF54928	-	no_errors
ACVR2A	92	genome.wustl.edu	37	2	148680662	148680662	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	2	148680662	148680662	C	T	SNP	ACVR2A	NM_001616.3	human	genbank	58_37c	+1	reviewed	missense	c.1198	p.R400C	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_Activin_recp,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,superfamily_Snake toxin-like	-	no_errors
AOX1	316	genome.wustl.edu	37	2	201523988	201523988	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	2	201523988	201523988	T	A	SNP	AOX1	NM_001159.3	human	genbank	58_37c	+1	reviewed	missense	c.3272	p.V1091E	0.997	HMMPfam_Ald_Xan_dh_C2,superfamily_Molybdenum cofactor-binding domain	PatternScan_MOLYBDOPTERIN_EUK,HMMPfam_Ald_Xan_dh_C,superfamily_CO dehydrogenase molybdoprotein N-domain-like,HMMPfam_Fer2,superfamily_2Fe-2S ferredoxin-like,HMMPfam_FAD_binding_5,HMMPfam_Fer2_2,superfamily_CO dehydrogenase ISP C-domain like,HMMPfam_CO_deh_flav_C,superfamily_CO dehydrogenase flavoprotein C-terminal domain-like,PatternScan_2FE2S_FER_1,HMMPfam_Ald_Xan_dh_C2,superfamily_Molybdenum cofactor-binding domain,superfamily_FAD-binding domain	-	no_errors
ATIC	471	genome.wustl.edu	37	2	216177253	216177253	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	2	216177253	216177253	G	A	SNP	ATIC	NM_004044.6	human	genbank	58_37c	+1	reviewed	missense	c.52	p.V18M	0.994	HMMPfam_MGS,superfamily_SSF52335	HMMPfam_MGS,HMMPfam_AICARFT_IMPCHas,HMMSmart_AICARFT_IMPCHas,superfamily_AICARFT_IMPCHas_formly,superfamily_SSF52335	-	no_errors
ATN1	1822	genome.wustl.edu	37	12	7045892	7045894	+	In_Frame_Del	DEL	CAG	CAG	-	rs67074116	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	12	7045892	7045894	CAG	-	DEL	ATN1	NM_001007026.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1462_1464	p.Q491in_frame_del	0.834:0.709:0.730	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
ATP9A	10079	genome.wustl.edu	37	20	50287755	50287755	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	20	50287755	50287755	C	T	SNP	ATP9A	NM_006045.1	human	genbank	58_37c	-1	validated	nonsense	c.1079	p.W360*	1.000	NULL	HMMPfam_Hydrolase,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
C18orf54	162681	genome.wustl.edu	37	18	51889197	51889197	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	18	51889197	51889197	G	A	SNP	C18orf54	NM_173529.4	human	genbank	58_37c	+1	validated	missense	c.646	p.E216K	0.811	NULL	NULL	-	no_errors
CRHR2	1395	genome.wustl.edu	37	7	30704716	30704716	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	7	30704716	30704716	G	A	SNP	CRHR2	NM_001883.3	human	genbank	58_37c	-1	validated	silent	c.513	p.L171	1.000	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_2,HMMPfam_HRM,HMMSmart_SM00008,PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Family A G protein-coupled receptor-like	-	no_errors
ENSG00000245620	0	genome.wustl.edu	37	17	56381883	56381883	+	RNA	DEL	G	G	-	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	17	56381883	56381883	G	-	DEL	BZRAP1	NM_004758.2	human	genbank	58_37c	-1	validated	intronic	c.5545-123	e31-123	0.000	-	-	-	no_errors
FKBP1AP1	0	genome.wustl.edu	37	19	58337889	58337889	+	RNA	SNP	T	T	A	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	19	58337889	58337889	T	A	SNP	FKBP1AP1	NR_024162.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.991	-	-	-	pseudogene
FKSG83	83954	genome.wustl.edu	37	6	27293456	27293456	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	6	27293456	27293456	C	T	SNP	FKSG83	NM_032030.2	human	genbank	58_37c	+1	validated	missense	c.395	p.S132L	0.005	NULL	HMMPfam_V1R	-	no_errors
INO80	54617	genome.wustl.edu	37	15	41275191	41275191	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	15	41275191	41275191	G	A	SNP	INO80	NM_017553.1	human	genbank	58_37c	-1	reviewed	missense	c.4322	p.A1441V	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56177098	56177117	+	Frame_Shift_Del	DEL	AGGTAATTTTTCTTCTGAAA	AGGTAATTTTTCTTCTGAAA	-	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	AGGTAATTTTTCTTCTGAAA	AGGTAATTTTTCTTCTGAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	5	56177098	56177117	AGGTAATTTTTCTTCTGAAA	-	DEL	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.2368_2369	p.R790fs	1.000:1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MKRN3	7681	genome.wustl.edu	37	15	23811331	23811331	+	Silent	SNP	G	G	A	rs149344478	byFrequency	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	15	23811331	23811331	G	A	SNP	MKRN3	NM_005664.3	human	genbank	58_37c	+1	reviewed	silent	c.402	p.P134	0.000	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
NT5DC3	51559	genome.wustl.edu	37	12	104208866	104208866	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	12	104208866	104208866	T	A	SNP	NT5DC3	NM_001031701.2	human	genbank	58_37c	-1	validated	missense	c.242	p.N81I	1.000	NULL	HMMPfam_5_nucleotid,superfamily_HAD-like	-	no_errors
PDZRN3	23024	genome.wustl.edu	37	3	73433946	73433946	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	3	73433946	73433946	C	T	SNP	PDZRN3	NM_015009.1	human	genbank	58_37c	-1	provisional	missense	c.1771	p.D591N	1.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00184,superfamily_TRAF domain-like,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
PHLDB1	23187	genome.wustl.edu	37	11	118486807	118486807	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	11	118486807	118486807	G	A	SNP	PHLDB1	NM_001144758.1	human	genbank	58_37c	+1	validated	missense	c.236	p.G79D	1.000	HMMPfam_FHA,superfamily_SMAD/FHA domain	HMMPfam_FHA,HMMPfam_PH,HMMSmart_SM00233,superfamily_SMAD/FHA domain,superfamily_PH domain-like	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PTPRM	5797	genome.wustl.edu	37	18	8088802	8088802	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	18	8088802	8088802	C	T	SNP	PTPRM	NM_001105244.1	human	genbank	58_37c	+1	reviewed	silent	c.1809	p.T603	0.007	HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMSmart_SM00404,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_ig,PatternScan_TYR_PHOSPHATASE_1,superfamily_Immunoglobulin,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RCSD1	92241	genome.wustl.edu	37	1	167667018	167667018	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	1	167667018	167667018	G	T	SNP	RCSD1	NM_052862.3	human	genbank	58_37c	+1	validated	missense	c.1157	p.G386V	0.000	NULL	HMMPfam_RCSD	-	no_errors
ROR1	4919	genome.wustl.edu	37	1	64643303	64643303	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	1	64643303	64643303	A	C	SNP	ROR1	NM_005012.2	human	genbank	58_37c	+1	validated	missense	c.1579	p.M527L	0.865	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,superfamily_Kringle-like,PatternScan_KRINGLE_1,HMMPfam_Fz,superfamily_Immunoglobulin	-	no_errors
SH3PXD2B	285590	genome.wustl.edu	37	5	171766645	171766645	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	5	171766645	171766645	C	A	SNP	SH3PXD2B	NM_001017995.2	human	genbank	58_37c	-1	validated	missense	c.1464	p.W488C	1.000	NULL	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PX,HMMSmart_PX,superfamily_PX	-	no_errors
SLC25A2	83884	genome.wustl.edu	37	5	140682837	140682837	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	5	140682837	140682837	G	A	SNP	SLC25A2	NM_031947.2	human	genbank	58_37c	-1	reviewed	missense	c.596	p.A199V	0.995	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
SLC44A2	57153	genome.wustl.edu	37	19	10742416	10742416	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	19	10742416	10742416	A	G	SNP	SLC44A2	NM_020428.3	human	genbank	58_37c	+1	validated	missense	c.617	p.E206G	1.000	NULL	HMMPfam_DUF580	-	no_errors
SLC4A11	83959	genome.wustl.edu	37	20	3214874	3214874	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	20	3214874	3214874	G	A	SNP	SLC4A11	NM_032034.3	human	genbank	58_37c	-1	reviewed	silent	c.426	p.N142	0.722	superfamily_Phoshotransferase/anion transport protein	HMMPfam_HCO3_cotransp,superfamily_Phoshotransferase/anion transport protein	-	no_errors
TAF3	83860	genome.wustl.edu	37	10	8006100	8006103	+	Frame_Shift_Del	DEL	ATTG	ATTG	-	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	ATTG	ATTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	10	8006100	8006103	ATTG	-	DEL	TAF3	NM_031923.2	human	genbank	58_37c	+1	provisional	frame_shift_del	c.627_630	p.L210fs	0.166:0.220:0.877:0.928	NULL	HMMSmart_PHD,HMMPfam_Bromo_TP,HMMSmart_BTP,superfamily_Histone-fold,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
THNSL2	55258	genome.wustl.edu	37	2	88482500	88482500	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	2	88482500	88482500	C	-	DEL	THNSL2	NM_018271.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.985	p.L329fs	1.000	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes	-	no_errors
THNSL2	55258	genome.wustl.edu	37	2	88482502	88482517	+	Frame_Shift_Del	DEL	CTCTGGCTCTGACAGC	CTCTGGCTCTGACAGC	-	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	CTCTGGCTCTGACAGC	CTCTGGCTCTGACAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	2	88482502	88482517	CTCTGGCTCTGACAGC	-	DEL	THNSL2	NM_018271.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.987_1002	p.S330fs	0.898:0.931:0.937:0.598:0.933:0.974:0.967:0.926:0.859:0.530:0.580:0.998:1.000:1.000:1.000:0.951	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes	-	no_errors
TNFRSF8	943	genome.wustl.edu	37	1	12157238	12157238	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	1	12157238	12157238	G	T	SNP	TNFRSF8	NM_001243.3	human	genbank	58_37c	+1	reviewed	missense	c.232	p.A78S	0.000	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like	-	no_errors
WDFY3	23001	genome.wustl.edu	37	4	85600076	85600076	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	4	85600076	85600076	T	A	SNP	WDFY3	NM_014991.4	human	genbank	58_37c	-1	reviewed	missense	c.10143	p.K3381N	0.998	superfamily_WD40 repeat-like	HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,superfamily_FYVE/PHD zinc finger,superfamily_Cyclin-like,superfamily_WD40 repeat-like,superfamily_ARM repeat,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
XRCC6BP1	91419	genome.wustl.edu	37	12	58339430	58339430	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	12	58339430	58339430	G	-	DEL	XRCC6BP1	NM_033276.2	human	genbank	58_37c	+1	provisional	frame_shift_del	c.207	p.D71fs	0.001	HMMPfam_Peptidase_M76	PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M76	-	no_errors
XRCC6BP1	91419	genome.wustl.edu	37	12	58339432	58339432	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	12	58339432	58339432	T	-	DEL	XRCC6BP1	NM_033276.2	human	genbank	58_37c	+1	provisional	frame_shift_del	c.209	p.D71fs	0.993	HMMPfam_Peptidase_M76	PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M76	-	no_errors
