Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AARS	16	genome.wustl.edu	37	16	70292941	70292941	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	16	70292941	70292941	G	C	SNP	AARS	NM_001605.2	human	genbank	58_37c	-1	reviewed	missense	c.1934	p.S645C	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit	HMMPfam_DHHA1,HMMPfam_tRNA_SAD,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA-synt_2c,superfamily_SSF55681	-	no_errors
ABCA1	19	genome.wustl.edu	37	9	107556793	107556794	+	Splice_Site	INS	-	-	AAA	novel	unknown	TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	9	107556793	107556794	-	AAA	INS	ABCA1	NM_005502.2	human	genbank	58_37c	-1	reviewed	splice_site_ins	c.5383-3_5383-2	e39-2	1.000:0.061	-	-	-	no_errors
B3GNT3	10331	genome.wustl.edu	37	19	17922586	17922586	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	19	17922586	17922586	G	A	SNP	B3GNT3	NM_014256.3	human	genbank	58_37c	+1	reviewed	silent	c.774	p.V258	0.730	HMMPfam_Galactosyl_T	HMMPfam_Galactosyl_T,PatternScan_TONB_DEPENDENT_REC_1	-	no_errors
C5orf41	153222	genome.wustl.edu	37	5	172537628	172537628	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	5	172537628	172537628	G	C	SNP	C5orf41	NM_153607.2	human	genbank	58_37c	+1	validated	missense	c.1521	p.K507N	1.000	NULL	PatternScan_BZIP_BASIC	-	no_errors
CDH24	64403	genome.wustl.edu	37	14	23518908	23518908	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	14	23518908	23518908	C	G	SNP	CDH24	NM_022478.3	human	genbank	58_37c	-1	validated	missense	c.1639	p.G547R	0.984	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
ENSG00000247918	0	genome.wustl.edu	37	17	40126012	40126012	+	RNA	SNP	G	G	T	novel	unknown	TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	17	40126012	40126012	G	T	SNP	ENSG00000247918	ENST00000499234	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.076	-	-	-	no_errors
GPR98	84059	genome.wustl.edu	37	5	89979505	89979505	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	5	89979505	89979505	G	C	SNP	GPR98	NM_032119.3	human	genbank	58_37c	+1	reviewed	missense	c.5767	p.E1923Q	1.000	HMMSmart_SM00237	HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
KCNJ12	3768	genome.wustl.edu	37	17	21318821	21318821	+	Missense_Mutation	SNP	A	A	C	rs1714865	byCluster;byFrequency	TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	17	21318821	21318821	A	C	SNP	KCNJ12	NM_021012.4	human	genbank	58_37c	+1	validated	missense	c.167	p.E56A	1.000	HMMPfam_IRK,superfamily_SSF81324	HMMPfam_IRK,HMMPfam_IRK_N,superfamily_Ig_E-set,superfamily_SSF81324	-	no_errors
MKRN3	7681	genome.wustl.edu	37	15	23811712	23811712	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	15	23811712	23811712	C	T	SNP	MKRN3	NM_005664.3	human	genbank	58_37c	+1	reviewed	silent	c.783	p.L261	0.999	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
NOTCH4	4855	genome.wustl.edu	37	6	32191658	32191659	+	In_Frame_Ins	INS	-	-	AGC	rs72110219	unknown	TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	6	32191658	32191659	-	AGC	INS	NOTCH4	NM_004557.3	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.48_47	p.17in_frame_insL	0.002:0.003	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_Notch,HMMSmart_SM00004,superfamily_Notch domain,HMMSmart_SM00179,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_NODP,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
PRG4	10216	genome.wustl.edu	37	1	186276520	186276520	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	1	186276520	186276520	A	C	SNP	PRG4	NM_005807.3	human	genbank	58_37c	+1	reviewed	missense	c.1669	p.T557P	0.000	NULL	superfamily_Hemopexin-like domain,HMMPfam_Somatomedin_B,HMMSmart_SM00201,PatternScan_SMB_1,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_SM00120,superfamily_Somatomedin B domain	-	no_errors
SCGB1C1	147199	genome.wustl.edu	37	11	193146	193146	+	Missense_Mutation	SNP	G	G	A	rs61736219	byFrequency;by1000genomes	TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	11	193146	193146	G	A	SNP	SCGB1C1	NM_145651.2	human	genbank	58_37c	+1	validated	missense	c.47	p.C16Y	0.223	HMMPfam_Uteroglobin	HMMPfam_Uteroglobin,superfamily_Secretoglobin	-	no_errors
TSKU	25987	genome.wustl.edu	37	11	76506673	76506675	+	In_Frame_Del	DEL	CTG	CTG	-	rs149062181	by1000genomes	TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	11	76506673	76506675	CTG	-	DEL	TSKU	NM_015516.3	human	genbank	58_37c	+1	validated	in_frame_del	c.13_15	p.L8in_frame_del	0.997:1.000:0.997	NULL	HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047	-	no_errors
ZNF280C	55609	genome.wustl.edu	37	X	129377634	129377634	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	X	129377634	129377634	C	G	SNP	ZNF280C	NM_017666.4	human	genbank	58_37c	-1	validated	missense	c.284	p.R95T	0.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
