Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AIM1L	0	genome.wustl.edu	37	1	26658074	26658074	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	26658074	26658074	T	C	SNP	AIM1L	NM_001039775.2	human	genbank	58_37c	-1	validated	missense	c.1085	p.D362G	0.929	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF	HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_RicinB_like,superfamily_G_crystallin_SF	-	no_errors
ANKK1	0	genome.wustl.edu	37	11	113269704	113269715	+	In_Frame_Del	DEL	AGCGGGCCCTTC	AGCGGGCCCTTC	-	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	AGCGGGCCCTTC	AGCGGGCCCTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	11	113269704	113269715	AGCGGGCCCTTC	-	DEL	ANKK1	NM_178510.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1013_1024	p.RALQ339in_frame_del	0.958:0.977:0.962:0.987:0.997:0.007:0.001:0.000:0.004:0.024:0.026:0.077	superfamily_ANK	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
APOBEC1	0	genome.wustl.edu	37	12	7802275	7802275	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	12	7802275	7802275	T	C	SNP	APOBEC1	NM_001644.3	human	genbank	58_37c	-1	reviewed	silent	c.579	p.L193	0.058	NULL	HMMPfam_APOBEC_C,HMMPfam_APOBEC_N,PatternScan_CYT_DCMP_DEAMINASES,superfamily_Cytidine_deaminase-like	-	no_errors
ASNSD1	0	genome.wustl.edu	37	2	190530910	190530910	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	2	190530910	190530910	G	C	SNP	ASNSD1	NM_019048.2	human	genbank	58_37c	+1	validated	missense	c.52	p.D18H	0.081	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	HMMPfam_Asn_synthase,superfamily_Adenine nucleotide alpha hydrolases-like,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	-	no_errors
ASTE1	0	genome.wustl.edu	37	3	130743882	130743882	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	3	130743882	130743882	G	T	SNP	ASTE1	NM_014065.2	human	genbank	58_37c	-1	validated	missense	c.269	p.T90K	0.000	HMMPfam_XPG_N,superfamily_SSF88723	HMMPfam_XPG_N,superfamily_SSF88723	-	no_errors
ASTN1	0	genome.wustl.edu	37	1	176926869	176926869	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	176926869	176926869	C	A	SNP	ASTN1	NM_004319.1	human	genbank	58_37c	-1	validated	missense	c.1832	p.C611F	1.000	HMMSmart_EGF	HMMSmart_MACPF,HMMSmart_FN3,HMMSmart_EGF,superfamily_FN_III-like	-	no_errors
BRCA1	0	genome.wustl.edu	37	17	41245615	41245617	+	In_Frame_Del	DEL	AAC	AAC	-	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	17	41245615	41245617	AAC	-	DEL	BRCA1	NM_007294.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1933_1931	p.C644in_frame_del	0.863:0.861:0.848	NULL	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
C14orf21	0	genome.wustl.edu	37	14	24769849	24769850	+	In_Frame_Ins	INS	-	-	GAGGAGGAG	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	14	24769849	24769850	-	GAGGAGGAG	INS	C14orf21	NM_174913.1	human	genbank	58_37c	+1	provisional	in_frame_ins	c.483_484	p.165in_frame_insEEE	0.000:0.015	superfamily_ARM-type_fold	HMMPfam_PUF,HMMSmart_Pumilio,superfamily_ARM-type_fold	-	no_errors
C9orf163	0	genome.wustl.edu	37	9	139379382	139379382	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	9	139379382	139379382	G	A	SNP	C9orf163	NM_152571.2	human	genbank	58_37c	+1	validated	nonsense	c.482	p.W161*	0.000	NULL	NULL	-	no_errors
C9orf51	0	genome.wustl.edu	37	9	38527736	38527736	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	9	38527736	38527736	T	A	SNP	C9orf51	ENST00000377689	human	ensembl	58_37c	+1	known	missense	c.643	p.S215T	0.245	NULL	NULL	-	no_errors
CACNG5	0	genome.wustl.edu	37	17	64876780	64876780	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	17	64876780	64876780	G	A	SNP	CACNG5	NM_014404.1	human	genbank	58_37c	+1	reviewed	silent	c.390	p.L130	1.000	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin	-	no_errors
CELF2	0	genome.wustl.edu	37	10	11299805	11299805	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	10	11299805	11299805	A	C	SNP	CELF2	NM_006561.3	human	genbank	58_37c	+1	reviewed	missense	c.508	p.I170L	1.000	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
CTNNA2	0	genome.wustl.edu	37	2	80773146	80773146	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	2	80773146	80773146	G	C	SNP	CTNNA2	NM_004389.3	human	genbank	58_37c	+1	validated	missense	c.1498	p.V500L	1.000	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	PatternScan_VINCULIN_1,HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
CTU2	0	genome.wustl.edu	37	16	88780635	88780636	+	Frame_Shift_Ins	INS	-	-	GTGT	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	16	88780635	88780636	-	GTGT	INS	CTU2	NM_001012759.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1097_1098	p.T367fs	1.000:1.000	HMMPfam_DUF2392,superfamily_Adenine nucleotide alpha hydrolases-like	HMMPfam_DUF2392,superfamily_Adenine nucleotide alpha hydrolases-like	-	no_errors
CYBRD1	0	genome.wustl.edu	37	2	172411303	172411303	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	2	172411303	172411303	C	T	SNP	CYBRD1	NM_024843.3	human	genbank	58_37c	+1	validated	missense	c.827	p.A276V	0.000	NULL	HMMPfam_Cytochrom_B561,HMMSmart_B561	-	no_errors
DCP1B	0	genome.wustl.edu	37	12	2062323	2062324	+	In_Frame_Ins	INS	-	-	TGC	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	12	2062323	2062324	-	TGC	INS	DCP1B	NM_152640.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.783_782	p.262in_frame_insQ	0.742:0.836	NULL	HMMPfam_DCP1,superfamily_PH domain-like	-	no_errors
DMGDH	0	genome.wustl.edu	37	5	78338302	78338302	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	5	78338302	78338302	A	T	SNP	DMGDH	NM_013391.2	human	genbank	58_37c	-1	reviewed	missense	c.997	p.F333I	1.000	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain	HMMPfam_DAO,HMMPfam_GCV_T,HMMPfam_GCV_T_C,superfamily_Aminomethyltransferase beta-barrel domain,superfamily_Aminomethyltransferase folate-binding domain,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
DNAH17	0	genome.wustl.edu	37	17	76482127	76482127	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	17	76482127	76482127	T	A	SNP	DNAH17	ENST00000389840	human	ensembl	58_37c	-1	known	missense	c.7148	p.Y2383F	1.000	NULL	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNMT3L	0	genome.wustl.edu	37	21	45670749	45670749	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	21	45670749	45670749	C	A	SNP	DNMT3L	NM_013369.2	human	genbank	58_37c	-1	reviewed	missense	c.853	p.V285L	0.948	NULL	superfamily_FYVE/PHD zinc finger	-	no_errors
DSG4	0	genome.wustl.edu	37	18	28991149	28991149	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	18	28991149	28991149	T	C	SNP	DSG4	NM_001134453.1	human	genbank	58_37c	+1	reviewed	missense	c.2150	p.L717P	0.000	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
EIF2AK4	0	genome.wustl.edu	37	15	40265856	40265856	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	15	40265856	40265856	T	C	SNP	EIF2AK4	NM_001013703.2	human	genbank	58_37c	+1	validated	missense	c.1724	p.F575S	1.000	superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_tRNA-synt_2b,HMMPfam_RWD,HMMSmart_SM00591,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),superfamily_UBC-like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_DNA_POLYMERASE_B,superfamily_Class II aaRS and biotin synthetases	-	no_errors
ENSG00000214793	0	genome.wustl.edu	37	11	59666083	59666083	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	11	59666083	59666083	G	A	SNP	ENSG00000214793	ENST00000398993	human	ensembl	58_37c	+1	known	missense	c.416	p.R139H	0.998	NULL	NULL	-	no_stop_codon
EPS8L1	0	genome.wustl.edu	37	19	55597838	55597838	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	19	55597838	55597838	C	G	SNP	EPS8L1	NM_133180.2	human	genbank	58_37c	+1	reviewed	missense	c.1729	p.R577G	0.990	superfamily_SH3-domain	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00462,HMMPfam_PTB	-	no_errors
FAM119A	0	genome.wustl.edu	37	2	208477909	208477909	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	2	208477909	208477909	C	T	SNP	FAM119A	NM_001127395.1	human	genbank	58_37c	-1	validated	missense	c.518	p.C173Y	1.000	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
FAM49B	0	genome.wustl.edu	37	8	130891704	130891704	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	8	130891704	130891704	C	A	SNP	FAM49B	NM_016623.3	human	genbank	58_37c	-1	predicted	missense	c.4	p.G2W	1.000	NULL	HMMPfam_DUF1394	-	no_errors
FBXL7	0	genome.wustl.edu	37	5	15500794	15500794	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	5	15500794	15500794	G	C	SNP	FBXL7	NM_012304.3	human	genbank	58_37c	+1	reviewed	silent	c.9	p.A3	1.000	NULL	HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00367,superfamily_RNI-like	-	no_errors
FRG1	0	genome.wustl.edu	37	4	190878577	190878577	+	Missense_Mutation	SNP	A	A	G	rs75883191	byFrequency	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	4	190878577	190878577	A	G	SNP	FRG1	NM_004477.2	human	genbank	58_37c	+1	reviewed	missense	c.457	p.N153D	1.000	superfamily_Actin-crosslinking proteins,HMMPfam_FRG1	PatternScan_LIPOCALIN,superfamily_Actin-crosslinking proteins,HMMPfam_FRG1	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29633945	29633945	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	20	29633945	29633945	G	A	SNP	FRG1B	NR_003579.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.975	-	-	-	pseudogene
GNAI3	0	genome.wustl.edu	37	1	110121878	110121878	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	110121878	110121878	T	C	SNP	GNAI3	NM_006496.2	human	genbank	58_37c	+1	validated	missense	c.356	p.M119T	1.000	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
HERC3	0	genome.wustl.edu	37	4	89577057	89577057	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	4	89577057	89577057	G	A	SNP	HERC3	NM_014606.1	human	genbank	58_37c	+1	provisional	missense	c.940	p.G314R	1.000	superfamily_RCC1/BLIP-II	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,superfamily_RCC1/BLIP-II	-	no_errors
HRC	0	genome.wustl.edu	37	19	49656737	49656737	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	19	49656737	49656737	G	C	SNP	HRC	NM_002152.2	human	genbank	58_37c	-1	reviewed	missense	c.1758	p.I586M	1.000	NULL	HMMPfam_Hist_rich_Ca-bd	-	no_errors
INTS6	0	genome.wustl.edu	37	13	51948544	51948544	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	13	51948544	51948544	A	C	SNP	INTS6	NM_012141.2	human	genbank	58_37c	-1	reviewed	missense	c.1904	p.V635G	1.000	PatternScan_DEAD_ATP_HELICASE	PatternScan_DEAD_ATP_HELICASE,superfamily_vWA-like	-	no_errors
ITGB4	0	genome.wustl.edu	37	17	73723282	73723282	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	17	73723282	73723282	C	A	SNP	ITGB4	NM_000213.3	human	genbank	58_37c	+1	reviewed	silent	c.87	p.R29	1.000	HMMSmart_SM00423	HMMPfam_Integrin_beta,HMMSmart_SM00187,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMSmart_SM00423,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_Integrin_B_tail,superfamily_Integrin beta tail domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA,superfamily_vWA-like,superfamily_EGF/Laminin,superfamily_Integrin domains	-	no_errors
KIAA1429	0	genome.wustl.edu	37	8	95504889	95504889	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	8	95504889	95504889	A	T	SNP	KIAA1429	NM_015496.3	human	genbank	58_37c	-1	validated	missense	c.4799	p.I1600K	1.000	NULL	NULL	-	no_errors
KIAA1609	0	genome.wustl.edu	37	16	84514235	84514235	+	Missense_Mutation	SNP	G	G	A	rs148516272	byFrequency	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	16	84514235	84514235	G	A	SNP	KIAA1609	NM_020947.3	human	genbank	58_37c	-1	validated	missense	c.1157	p.T386M	0.042	HMMPfam_TLD,HMMSmart_SM00584	HMMPfam_TLD,HMMSmart_SM00584	-	no_errors
KRT9	0	genome.wustl.edu	37	17	39724452	39724452	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	17	39724452	39724452	C	T	SNP	KRT9	NM_000226.3	human	genbank	58_37c	-1	reviewed	silent	c.1356	p.E452	0.004	HMMPfam_Filament,PatternScan_IF	HMMPfam_Filament,PatternScan_IF	-	no_errors
LASS5	0	genome.wustl.edu	37	12	50524370	50524370	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	12	50524370	50524370	C	G	SNP	LASS5	NM_147190.2	human	genbank	58_37c	-1	provisional	silent	c.1137	p.R379	0.346	NULL	HMMPfam_Homeobox,HMMSmart_HOX,HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
LGALS9B	0	genome.wustl.edu	37	17	20370782	20370783	+	Frame_Shift_Ins	INS	-	-	TC	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	17	20370782	20370783	-	TC	INS	LGALS9B	NM_001042685.1	human	genbank	58_37c	-1	validated	frame_shift_ins	c.2_1	p.M1fs	0.878:0.831	NULL	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl	-	no_errors
LOC441416	0	genome.wustl.edu	37	9	44175382	44175382	+	RNA	SNP	G	G	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	9	44175382	44175382	G	T	SNP	LOC441416	XR_016304.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.763	-	-	-	pseudogene
LOR	0	genome.wustl.edu	37	1	153233488	153233489	+	In_Frame_Ins	INS	-	-	GGCGGT	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	153233488	153233489	-	GGCGGT	INS	LOR	NM_000427.2	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.63_64	p.25in_frame_insGG	0.924:0.986	NULL	NULL	-	no_errors
LRRC40	0	genome.wustl.edu	37	1	70621394	70621394	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	70621394	70621394	G	C	SNP	LRRC40	NM_017768.4	human	genbank	58_37c	-1	validated	missense	c.1306	p.Q436E	1.000	superfamily_SSF52058	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
MPG	0	genome.wustl.edu	37	16	129524	129524	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	16	129524	129524	G	C	SNP	MPG	NM_002434.2	human	genbank	58_37c	+1	validated	missense	c.140	p.S47T	0.000	NULL	HMMPfam_Pur_DNA_glyco,superfamily_FMT C-terminal domain-like	-	no_errors
MTR	0	genome.wustl.edu	37	1	237015844	237015844	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	237015844	237015844	A	C	SNP	MTR	NM_000254.2	human	genbank	58_37c	+1	reviewed	silent	c.1719	p.I573	1.000	HMMPfam_Pterin_bind,superfamily_Dihydropteroate synthetase-like	HMMPfam_Pterin_bind,HMMPfam_S-methyl_trans,superfamily_Homocysteine S-methyltransferase,HMMPfam_B12-binding_2,superfamily_Methionine synthase domain,HMMPfam_Met_synt_B12,superfamily_Methionine synthase activation domain-like,HMMPfam_B12-binding,superfamily_Cobalamin (vitamin B12)-binding domain,superfamily_Dihydropteroate synthetase-like	-	no_errors
NBPF1	0	genome.wustl.edu	37	1	16902844	16902844	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	16902844	16902844	G	T	SNP	NBPF1	NM_017940.3	human	genbank	58_37c	-1	predicted	missense	c.2037	p.D679E	0.001	NULL	HMMPfam_DUF1220	-	no_errors
NLRP12	0	genome.wustl.edu	37	19	54299149	54299149	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	19	54299149	54299149	C	T	SNP	NLRP12	NM_144687.2	human	genbank	58_37c	-1	reviewed	missense	c.3062	p.R1021Q	0.507	HMMSmart_SM00368,superfamily_RNI-like	HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like	-	no_errors
OR6K6	0	genome.wustl.edu	37	1	158725496	158725496	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	158725496	158725496	G	C	SNP	OR6K6	NM_001005184.1	human	genbank	58_37c	+1	provisional	missense	c.891	p.W297C	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PCDHB8	0	genome.wustl.edu	37	5	140558924	140558924	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	5	140558924	140558924	A	T	SNP	PCDHB8	NM_019120.2	human	genbank	58_37c	+1	reviewed	missense	c.1309	p.N437Y	0.002	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PDE4B	0	genome.wustl.edu	37	1	66833528	66833528	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	66833528	66833528	G	A	SNP	PDE4B	NM_001037341.1	human	genbank	58_37c	+1	reviewed	missense	c.1534	p.D512N	1.000	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178951957	178951957	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	3	178951957	178951957	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3012	p.M1004I	1.000	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLEKHH2	0	genome.wustl.edu	37	2	43924309	43924309	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	2	43924309	43924309	G	C	SNP	PLEKHH2	NM_172069.3	human	genbank	58_37c	+1	validated	splice_site	c.503-1	e6-1	1.000	-	-	-	no_errors
PORCN	0	genome.wustl.edu	37	X	48372917	48372917	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	X	48372917	48372917	C	T	SNP	PORCN	NM_203475.1	human	genbank	58_37c	+1	reviewed	silent	c.850	p.L284	1.000	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors
POTEH	0	genome.wustl.edu	37	22	16277852	16277852	+	Silent	SNP	C	C	T	rs11489067	byFrequency	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	22	16277852	16277852	C	T	SNP	POTEH	NM_001136213.1	human	genbank	58_37c	-1	provisional	silent	c.1062	p.S354	0.004	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
PRSS27	0	genome.wustl.edu	37	16	2763623	2763623	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	16	2763623	2763623	G	A	SNP	PRSS27	NM_031948.3	human	genbank	58_37c	-1	validated	silent	c.585	p.Y195	0.994	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
RAB1A	0	genome.wustl.edu	37	2	65315695	65315695	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	2	65315695	65315695	C	A	SNP	RAB1A	NM_004161.4	human	genbank	58_37c	-1	reviewed	missense	c.550	p.G184C	1.000	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RASL11B	0	genome.wustl.edu	37	4	53731600	53731600	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	4	53731600	53731600	C	T	SNP	RASL11B	NM_023940.2	human	genbank	58_37c	+1	provisional	silent	c.375	p.S125	1.000	HMMPfam_Miro,superfamily_SSF52540	HMMPfam_Miro,superfamily_SSF52540	-	no_errors
RIMS2	0	genome.wustl.edu	37	8	104897774	104897774	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	8	104897774	104897774	G	A	SNP	RIMS2	NM_001100117.1	human	genbank	58_37c	+1	validated	missense	c.947	p.S316N	0.982	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_RPH3A_effector,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
SCNN1B	0	genome.wustl.edu	37	16	23360076	23360076	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	16	23360076	23360076	G	A	SNP	SCNN1B	NM_000336.2	human	genbank	58_37c	+1	reviewed	nonsense	c.156	p.W52*	1.000	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-	no_errors
SENP3	0	genome.wustl.edu	37	17	7468905	7468905	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	17	7468905	7468905	G	C	SNP	SENP3	ENST00000321337	human	ensembl	58_37c	+1	known	splice_site	c.1215+1	e4+1	1.000	-	-	-	no_errors
SERTAD4	0	genome.wustl.edu	37	1	210415039	210415039	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	210415039	210415039	T	C	SNP	SERTAD4	NM_019605.3	human	genbank	58_37c	+1	validated	missense	c.428	p.I143T	0.999	HMMPfam_SERTA	HMMPfam_SERTA	-	no_errors
SNTG2	0	genome.wustl.edu	37	2	1079205	1079205	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	2	1079205	1079205	C	T	SNP	SNTG2	NM_018968.3	human	genbank	58_37c	+1	reviewed	missense	c.74	p.T25M	0.995	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
SORBS1	0	genome.wustl.edu	37	10	97096374	97096374	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	10	97096374	97096374	C	G	SNP	SORBS1	NM_001034954.1	human	genbank	58_37c	-1	validated	silent	c.3543	p.L1181	0.984	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Sorb,HMMSmart_SM00459	-	no_errors
SPTA1	0	genome.wustl.edu	37	1	158608032	158608032	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	158608032	158608032	C	G	SNP	SPTA1	NM_003126.2	human	genbank	58_37c	-1	reviewed	splice_site	c.4981-1	e36-1	1.000	-	-	-	no_errors
SRRD	0	genome.wustl.edu	37	22	26884128	26884128	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	22	26884128	26884128	A	C	SNP	SRRD	NM_001013694.2	human	genbank	58_37c	+1	validated	silent	c.384	p.P128	0.000	NULL	HMMPfam_SRR1	-	no_errors
SS18	0	genome.wustl.edu	37	18	23612480	23612480	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	18	23612480	23612480	A	G	SNP	SS18	NM_001007559.1	human	genbank	58_37c	-1	validated	silent	c.1113	p.G371	0.970	NULL	HMMPfam_SSXT	-	no_errors
SSRP1	0	genome.wustl.edu	37	11	57099707	57099707	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	11	57099707	57099707	G	A	SNP	SSRP1	NM_003146.2	human	genbank	58_37c	-1	reviewed	missense	c.920	p.S307L	1.000	HMMPfam_SSrecog	HMMPfam_HMG_box,HMMSmart_HMG,HMMPfam_SSrecog,superfamily_HMG-box	-	no_errors
STK31	0	genome.wustl.edu	37	7	23827704	23827704	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	7	23827704	23827704	C	T	SNP	STK31	NM_031414.3	human	genbank	58_37c	+1	reviewed	missense	c.2593	p.R865C	1.000	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00220,HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Protein kinase-like (PK-like),superfamily_Tudor/PWWP/MBT	-	no_errors
TLR5	0	genome.wustl.edu	37	1	223286092	223286092	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	223286092	223286092	C	A	SNP	TLR5	NM_003268.5	human	genbank	58_37c	-1	reviewed	silent	c.282	p.L94	1.000	HMMSmart_LRR_TYP,superfamily_SSF52058	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
TNFAIP3	0	genome.wustl.edu	37	6	138197148	138197148	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	6	138197148	138197148	G	C	SNP	TNFAIP3	NM_006290.2	human	genbank	58_37c	+1	reviewed	missense	c.650	p.S217T	1.000	HMMPfam_OTU	HMMPfam_zf-A20,HMMSmart_ZnF_A20,HMMPfam_OTU	-	no_errors
VAV3	0	genome.wustl.edu	37	1	108292204	108292204	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	108292204	108292204	T	G	SNP	VAV3	NM_006113.4	human	genbank	58_37c	-1	reviewed	missense	c.1272	p.L424F	0.983	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_SH2,HMMSmart_SM00252,PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_SH3_2,superfamily_Calponin-homology domain CH-domain,superfamily_PH domain-like,superfamily_SH2 domain,superfamily_Cysteine-rich domain	-	no_errors
WBP11P1	0	genome.wustl.edu	37	18	30092638	30092638	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	18	30092638	30092638	G	A	SNP	WBP11P1	NR_003558.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.329	-	-	-	pseudogene
WDR90	0	genome.wustl.edu	37	16	705776	705776	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	16	705776	705776	C	T	SNP	WDR90	NM_145294.4	human	genbank	58_37c	+1	provisional	missense	c.1853	p.P618L	0.913	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ZFR	0	genome.wustl.edu	37	5	32420120	32420120	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	5	32420120	32420120	C	A	SNP	ZFR	NM_016107.3	human	genbank	58_37c	-1	validated	missense	c.226	p.V76F	1.000	NULL	HMMSmart_ZnF_U1,HMMPfam_DZF,HMMSmart_DZF,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF175	0	genome.wustl.edu	37	19	52090259	52090259	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	19	52090259	52090259	C	T	SNP	ZNF175	NM_007147.2	human	genbank	58_37c	+1	validated	silent	c.675	p.D225	0.482	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF229	0	genome.wustl.edu	37	19	44934254	44934254	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	19	44934254	44934254	A	G	SNP	ZNF229	NM_014518.2	human	genbank	58_37c	-1	validated	silent	c.702	p.P234	0.001	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
