Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CHD5	26038	genome.wustl.edu	37	1	6211198	6211198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015557.1	-1	provisional	p.R296S	1.000	40	0%	35	28.6%	0	-	possibly_damaging(0.847)	tolerated(0.72)	neutral(0.327)	NULL
RERE	473	genome.wustl.edu	37	1	8425908	8425908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001042681.1	-1	reviewed	p.V471I	1.000	36	0%	26	46.2%	5	60%	probably_damaging(0.985)	tolerated(0.37)	neutral(0.451)	NULL
TARDBP	23435	genome.wustl.edu	37	1	11080531	11080531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_007375.3	+1	reviewed	p.R197C	1.000	111	0%	119	37.8%	42	40.4%	possibly_damaging(0.919)	deleterious(0)	deleterious(0.814)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PHC2	1912	genome.wustl.edu	37	1	33840972	33840972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_198040.2	-1	reviewed	p.V57M	1.000	25	0%	30	30%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
CSMD2	114784	genome.wustl.edu	37	1	34006795	34006795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_052896.3	-1	validated	p.H2987R	0.335	73	0%	99	46.5%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ZMYM6	9204	genome.wustl.edu	37	1	35474490	35474490	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_007167.3	-1	validated	p.R510*	1.000	142	0%	198	41.4%	3	66.6%	-	-	-	HMMPfam_zf-FCS
GRIK3	2899	genome.wustl.edu	37	1	37307343	37307343	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_000831.3	-1	reviewed	p.I508	0.267	26	0%	34	38.2%	0	-	-	-	-	HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53850
RLF	6018	genome.wustl.edu	37	1	40705784	40705784	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_012421.3	+1	validated	p.S1804A	0.821	84	0%	132	40.9%	11	54.5%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
SZT2	23334	genome.wustl.edu	37	1	43896737	43896737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015284.2	+1	predicted	p.T732M	0.649	43	0%	30	40%	1	100%	benign(0.323)	deleterious(0.04)	neutral(0.450)	NULL
DMAP1	55929	genome.wustl.edu	37	1	44685127	44685127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001034023.1	+1	reviewed	p.G319A	1.000	31	0%	25	24%	106	47.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DMAP1
ORC1	4998	genome.wustl.edu	37	1	52850321	52850321	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004153.2	-1	reviewed	p.Q552	1.000	35	0%	43	37.2%	1	0%	-	-	-	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
ZCCHC11	23318	genome.wustl.edu	37	1	52981598	52981598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001009881.1	-1	validated	p.R283C	1.000	199	0%	334	42.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM48	55706	genome.wustl.edu	37	1	54273375	54273375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_018087.4	-1	validated	p.T282M	0.855	99	0%	132	40.9%	3	0%	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_Ndc1_Nup
USP24	23358	genome.wustl.edu	37	1	55560963	55560963	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015306.2	-1	validated	p.V1896	0.999	151	0%	185	24.3%	4	25%	-	-	-	NULL
USP24	23358	genome.wustl.edu	37	1	55563339	55563339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015306.2	-1	validated	p.I1723V	1.000	111	0%	171	33.9%	2	50%	benign(0.279)	tolerated(0.11)	neutral(0.301)	HMMPfam_UCH,superfamily_Cysteine proteinases
HOOK1	51361	genome.wustl.edu	37	1	60294499	60294499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000371208	+1	known	p.D66G	1.000	216	0%	290	43.4%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_HOOK
INADL	10207	genome.wustl.edu	37	1	62582249	62582249	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_176877.2	+1	reviewed	p.A1567	0.004	75	0%	76	48.7%	12	50%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
INADL	10207	genome.wustl.edu	37	1	62594568	62594568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_176877.2	+1	reviewed	p.A1741E	0.927	82	0%	66	30.3%	5	40%	possibly_damaging(0.88)	tolerated(1)	neutral(0.343)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
FUBP1	8880	genome.wustl.edu	37	1	78432410	78432410	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_003902.3	-1	reviewed	p.S147	0.958	112	0%	199	43.7%	15	80%	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
GBP2	2634	genome.wustl.edu	37	1	89587571	89587572	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004120.3	-1	reviewed	p.A26fs	0.024:0.008	-	-	-	-	-	-	-	-	-	HMMPfam_GBP,superfamily_SSF52540
GBP7	388646	genome.wustl.edu	37	1	89613329	89613329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_207398.2	-1	validated	p.P429L	0.055	307	0%	340	11.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
ZNF644	84146	genome.wustl.edu	37	1	91383650	91383650	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_201269.1	-1	validated	p.T1250	0.981	402	0%	574	35.4%	13	53.8%	-	-	-	NULL
ABCA4	24	genome.wustl.edu	37	1	94564497	94564497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_000350.2	-1	reviewed	p.E207D	0.974	16	0%	16	43.8%	0	-	benign(0.429)	tolerated(0.61)	neutral(0.144)	NULL
VAV3	10451	genome.wustl.edu	37	1	108313328	108313328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_006113.4	-1	reviewed	p.R193Q	1.000	286	0%	780	43.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_DBL homology domain (DH-domain),superfamily_Calponin-homology domain CH-domain
PI4KB	5298	genome.wustl.edu	37	1	151266606	151266606	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000446339	-1	known	p.A25V	0.014	32	0%	40	35%	28	39.2%	-	-	-	superfamily_Protein kinase-like (PK-like)
S100A8	6279	genome.wustl.edu	37	1	153362953	153362953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_002964.3	-1	reviewed	p.S20F	0.978	93	0%	103	34%	26	11.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_S_100,superfamily_SSF47473
IQGAP3	128239	genome.wustl.edu	37	1	156518182	156518182	+	Silent	SNP	G	G	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_178229.4	-1	validated	p.G697	0.029	47	0%	43	20.9%	2	50%	-	-	-	NULL
ISG20L2	81875	genome.wustl.edu	37	1	156697181	156697181	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_030980.1	-1	provisional	p.S88	0.003	82	0%	83	43.4%	3	66.6%	-	-	-	NULL
OR10T2	128360	genome.wustl.edu	37	1	158368475	158368475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001004475.1	-1	provisional	p.R261L	0.312	52	0%	36	47.2%	0	-	benign(0.26)	deleterious(0.01)	neutral(0.433)	HMMPfam_7tm_1,superfamily_SSF81321
PRRC2C	23215	genome.wustl.edu	37	1	171544168	171544168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015172.3	+1	validated	p.S2284G	0.938	112	0%	148	32.4%	15	13.3%	possibly_damaging(0.94)	-	-	NULL
RABGAP1L	9910	genome.wustl.edu	37	1	174200461	174200461	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_014857.3	+1	validated	p.L170	0.992	179	0%	236	41.1%	1	0%	-	-	-	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
NMNAT2	23057	genome.wustl.edu	37	1	183262858	183262858	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015039.2	-1	reviewed	p.H52	1.000	74	0%	98	43.9%	0	-	-	-	-	HMMPfam_CTP_transf_2,superfamily_Nucleotidylyl transferase
TPR	7175	genome.wustl.edu	37	1	186302265	186302265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_003292.2	-1	reviewed	p.V1815A	1.000	52	0%	52	38.5%	27	55.5%	possibly_damaging(0.448)	tolerated(0.08)	neutral(0.447)	NULL
HADHB	3032	genome.wustl.edu	37	2	26486333	26486333	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_000183.2	+1	reviewed	p.L65	1.000	190	0%	256	37.5%	34	38.2%	-	-	-	HMMPfam_Thiolase_N,superfamily_Thiolase-like
DHX57	90957	genome.wustl.edu	37	2	39088340	39088340	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_198963.1	-1	provisional	p.S404	0.350	121	0%	187	39.6%	2	0%	-	-	-	HMMPfam_RWD
THADA	63892	genome.wustl.edu	37	2	43768345	43768345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001083953.1	-1	validated	p.M1073V	0.000	78	0%	56	14.3%	0	-	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_DUF2428
MOGS	7841	genome.wustl.edu	37	2	74688908	74688908	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_006302.2	-1	reviewed	p.Q670E	1.000	31	0%	20	40%	59	44%	possibly_damaging(0.906)	tolerated(0.78)	neutral(0.360)	HMMPfam_Glyco_hydro_63,superfamily_Six-hairpin glycosidases
LOC730268	730268	genome.wustl.edu	37	2	88019352	88019352	+	Silent	SNP	T	T	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	XM_002342213.1	+1	model	p.G302	1.000	49	0%	62	19.4%	0	-	-	-	-	NULL
INPP4A	3631	genome.wustl.edu	37	2	99154393	99154394	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001134224.1	+1	reviewed	p.R180fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
INPP4A	3631	genome.wustl.edu	37	2	99181122	99181122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001134224.1	+1	reviewed	p.G688D	1.000	15	0%	20	35%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EIF5B	9669	genome.wustl.edu	37	2	99976805	99976805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015904.3	+1	reviewed	p.K48E	1.000	116	0%	317	38.2%	10	40%	unknown(0)	deleterious(0)	-	NULL
NEB	4703	genome.wustl.edu	37	2	152510504	152510504	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004543.4	-1	reviewed	e50+2	1.000	151	0%	169	38.5%	0	-	-	-	-	-
GALNT5	11227	genome.wustl.edu	37	2	158115956	158115956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_014568.1	+1	provisional	p.E454D	1.000	74	0%	125	37.6%	0	-	benign(0.132)	tolerated(0.07)	neutral(0.330)	NULL
TTN	7273	genome.wustl.edu	37	2	179408965	179408965	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_133378.4	-1	reviewed	p.A29429V	0.203	98	0%	70	32.9%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179474467	179474467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000356127	-1	known	p.A14660V	1.000	141	0%	35	51.4%	0	-	benign(0.29)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179638970	179638970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_133379.3	-1	reviewed	p.D2341N	1.000	107	0%	110	15.5%	0	-	probably_damaging(0.965)	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
SPEG	10290	genome.wustl.edu	37	2	220353340	220353340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_005876.4	+1	validated	p.T2660I	0.993	22	0%	11	36.4%	0	-	possibly_damaging(0.919)	tolerated(0.07)	deleterious(0.689)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SPATA3	130560	genome.wustl.edu	37	2	231861028	231861028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_139073.3	+1	validated	p.T27I	0.000	116	0%	129	47.3%	0	-	possibly_damaging(0.901)	tolerated(0.08)	deleterious(0.657)	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233704620	233704620	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001103147.1	+1	reviewed	p.T964fs	0.968	-	-	-	-	-	-	-	-	-	NULL
DGKD	8527	genome.wustl.edu	37	2	234346920	234346920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_152879.2	+1	reviewed	p.N327S	1.000	61	0%	87	28.7%	0	-	probably_damaging(0.964)	deleterious(0.02)	deleterious(0.789)	HMMPfam_DAGK_cat,HMMSmart_SM00046
NDUFA10	4705	genome.wustl.edu	37	2	240957252	240957252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000307300	-1	known	p.R216K	0.000	4	0.000	33	0.182	0	-	benign(0.104)	deleterious(0.05)	neutral(0.353)	superfamily_SSF52540
GRIP2	80852	genome.wustl.edu	37	3	14549147	14549147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001080423.1	-1	provisional	p.R812W	1.000	35	0%	24	45.8%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
METTL6	131965	genome.wustl.edu	37	3	15452936	15452936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_152396.2	-1	validated	p.A228T	1.000	187	0%	197	10.7%	6	16.6%	benign(0.001)	tolerated(0.59)	neutral(0.004)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ANKRD28	23243	genome.wustl.edu	37	3	15727522	15727522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015199.2	-1	provisional	p.A689E	1.000	172	0%	237	52.7%	1	0%	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ZNF501	115560	genome.wustl.edu	37	3	44776365	44776365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_145044.2	+1	validated	p.R151H	0.009	188	0%	316	38.3%	0	-	possibly_damaging(0.922)	tolerated(0.21)	neutral(0.415)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TRAIP	10293	genome.wustl.edu	37	3	49885601	49885601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_005879.2	-1	reviewed	p.R44Q	1.000	64	0%	77	50.6%	1	100%	possibly_damaging(0.666)	tolerated(0.13)	deleterious(0.488)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
VPRBP	9730	genome.wustl.edu	37	3	51459868	51459868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_014703.2	-1	validated	p.R568L	1.000	91	0%	116	47.4%	4	75%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	superfamily_ARM repeat
BAP1	8314	genome.wustl.edu	37	3	52436395	52436395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004656.2	-1	reviewed	p.R700Q	1.000	12	0%	13	53.8%	29	44.8%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	NULL
ACOX2	8309	genome.wustl.edu	37	3	58510265	58510266	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_003500.3	-1	reviewed	p.P472fs	0.063:0.059	-	-	-	-	-	-	-	-	-	NULL
MAGI1	9223	genome.wustl.edu	37	3	65346923	65346923	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000460329	-1	known	p.A1102V	0.999	128	0%	167	11.4%	14	7.1%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
COPB2	9276	genome.wustl.edu	37	3	139079976	139079976	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004766.2	-1	validated	p.A719	0.022	128	0%	100	10%	97	10.3%	-	-	-	HMMPfam_Coatomer_WDAD
HLTF	6596	genome.wustl.edu	37	3	148789143	148789143	+	Missense_Mutation	SNP	A	A	G	rs140551459		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_003071.3	-1	reviewed	p.W264R	1.000	338	0%	506	43.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
PIK3CA	5290	genome.wustl.edu	37	3	178916891	178916891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_006218.2	+1	reviewed	p.R93Q	1.000	109	0%	212	42%	0	-	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
SPON2	10417	genome.wustl.edu	37	4	1164359	1164359	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000290902	-1	known	p.T214	0.013	91	0%	63	25.4%	57	24.5%	-	-	-	HMMPfam_Spond_N
HTT	3064	genome.wustl.edu	37	4	3127339	3127339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_002111.6	+1	reviewed	p.S462N	1.000	88	0%	86	27.9%	0	-	possibly_damaging(0.538)	deleterious(0.03)	deleterious(0.546)	superfamily_ARM repeat
NPFFR2	10886	genome.wustl.edu	37	4	73013008	73013008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004885.2	+1	reviewed	p.R350G	0.981	42	0%	50	40%	0	-	benign(0.106)	tolerated(0.4)	neutral(0.024)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PTPN13	5783	genome.wustl.edu	37	4	87683990	87683990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_080685.2	+1	reviewed	p.R1222C	0.580	58	0%	38	31.6%	2	50%	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	NULL
RAP1GDS1	5910	genome.wustl.edu	37	4	99358094	99358094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001100426.1	+1	validated	p.T525I	1.000	255	0%	523	44.9%	17	47%	probably_damaging(0.959)	tolerated(0.2)	neutral(0.452)	superfamily_ARM repeat
MTTP	4547	genome.wustl.edu	37	4	100540225	100540225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_000253.2	+1	reviewed	p.Y771C	1.000	277	0%	314	28%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
MANBA	4126	genome.wustl.edu	37	4	103635609	103635609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_005908.3	-1	reviewed	p.F220S	0.985	152	0%	266	38.7%	0	-	benign(0.008)	tolerated(0.23)	neutral(0.042)	NULL
EGF	1950	genome.wustl.edu	37	4	110909858	110909858	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001963.4	+1	reviewed	p.H909	0.722	99	0%	64	40.6%	0	-	-	-	-	HMMSmart_EGF_CA,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_SSF57196
C4orf21	55345	genome.wustl.edu	37	4	113462392	113462392	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000505019	-1	known	p.Y1877	0.997	121	0%	124	33.1%	4	50%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
PET112	5188	genome.wustl.edu	37	4	152594036	152594036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004564.2	-1	validated	p.L475M	0.207	19	0%	42	33.3%	24	29.1%	benign(0.025)	tolerated(1)	neutral(0.001)	superfamily_GatB/YqeY domain,HMMPfam_GatB_Yqey
NPY2R	4887	genome.wustl.edu	37	4	156135236	156135236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_000910.2	+1	provisional	p.V49I	1.000	163	0%	158	46.2%	0	-	possibly_damaging(0.938)	deleterious(0.05)	deleterious(0.729)	superfamily_Family A G protein-coupled receptor-like
RXFP1	59350	genome.wustl.edu	37	4	159529174	159529174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_021634.2	+1	provisional	p.G172E	1.000	148	0%	222	26.1%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
RAPGEF2	9693	genome.wustl.edu	37	4	160273951	160273951	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_014247.2	+1	validated	p.S1166*	0.141	147	0%	177	36.7%	2	100%	-	-	-	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56161195	56161195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_005921.1	+1	validated	p.C355Y	1.000	136	0%	142	38%	5	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_SWIM
KCNN2	3781	genome.wustl.edu	37	5	113740267	113740267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_021614.2	+1	reviewed	p.A239T	1.000	219	0%	186	40.9%	0	-	benign(0.017)	tolerated(0.32)	neutral(0.025)	NULL
DMXL1	1657	genome.wustl.edu	37	5	118485645	118485645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_005509.4	+1	validated	p.T1375A	1.000	84	0%	88	39.8%	0	-	benign(0.413)	deleterious(0.01)	deleterious(0.539)	NULL
PCDHA7	56141	genome.wustl.edu	37	5	140214923	140214923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_018910.2	+1	reviewed	p.P319T	0.292	168	0%	178	14.6%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140229035	140229035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_031857.1	+1	reviewed	p.P319T	0.001	83	0%	113	32.7%	0	-	benign(0.009)	tolerated(0.46)	neutral(0.013)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140230488	140230488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_014005.3	+1	reviewed	p.S803N	0.000	56	0%	70	38.6%	0	-	benign(0.041)	tolerated(0.28)	neutral(0.034)	NULL
PCDHGB6	56100	genome.wustl.edu	37	5	140787977	140787977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_018926.2	+1	reviewed	p.A70T	0.000	125	0%	214	27.6%	0	-	benign(0.017)	tolerated(0.57)	neutral(0.007)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
GPR151	134391	genome.wustl.edu	37	5	145895279	145895279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_194251.2	-1	provisional	p.A133V	1.000	71	0%	47	46.8%	0	-	probably_damaging(0.995)	tolerated(0.2)	deleterious(0.507)	HMMPfam_7tm_1,superfamily_SSF81321
HTR4	3360	genome.wustl.edu	37	5	147900486	147900486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001040172.2	-1	reviewed	p.A183V	0.004	76	0%	39	38.5%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000251133	0	genome.wustl.edu	37	5	175716453	175716453	+	RNA	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000505928	-1	novel	NULL	0.000	14	0%	17	47.1%	0	-	-	-	-	-
JARID2	3720	genome.wustl.edu	37	6	15520402	15520402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004973.2	+1	reviewed	p.R1221C	1.000	63	0%	55	34.5%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NUP153	9972	genome.wustl.edu	37	6	17688850	17688850	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_005124.2	-1	reviewed	e2-1	1.000	102	0%	135	37%	0	-	-	-	-	-
RNF144B	255488	genome.wustl.edu	37	6	18457581	18457581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_182757.2	+1	validated	p.T176I	0.930	41	0%	42	38.1%	0	-	benign(0.045)	tolerated(0.19)	neutral(0.052)	NULL
HIST1H4E	8367	genome.wustl.edu	37	6	26204929	26204941	+	Frame_Shift_Del	DEL	CCGTAAGGTCCTG	CCGTAAGGTCCTG	-	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	CCGTAAGGTCCTG	CCGTAAGGTCCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_003545.3	+1	reviewed	p.R20fs	1.000:1.000:1.000:0.832:0.998:1.000:1.000:1.000:1.000:0.972:0.989:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00417,superfamily_Histone-fold
ZNF184	7738	genome.wustl.edu	37	6	27420247	27420247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_007149.2	-1	validated	p.C364F	1.000	92	0%	126	38.9%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF192	7745	genome.wustl.edu	37	6	28121102	28121102	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_006298.2	+1	validated	p.K348N	0.998	92	0%	111	38.7%	0	-	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	superfamily_C2H2 and C2HC zinc fingers
C6orf136	221545	genome.wustl.edu	37	6	30617510	30617510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001109938.2	+1	validated	p.W83L	0.856	75	0%	83	38.6%	4	25%	possibly_damaging(0.462)	tolerated(0.29)	neutral(0.180)	NULL
LEMD2	221496	genome.wustl.edu	37	6	33747922	33747922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_181336.3	-1	validated	p.A322V	0.975	43	0%	69	44.9%	24	58.3%	probably_damaging(0.978)	tolerated(0.26)	neutral(0.455)	NULL
FGD2	221472	genome.wustl.edu	37	6	36982668	36982668	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_173558.3	+1	validated	p.E295Q	1.000	13	0%	12	58.3%	0	-	probably_damaging(0.974)	tolerated(0.1)	deleterious(0.702)	superfamily_DBL homology domain (DH-domain)
C6orf130	221443	genome.wustl.edu	37	6	41035088	41035088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_145063.2	-1	predicted	p.V149M	0.997	161	0%	142	31%	22	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52949
SLC29A1	2030	genome.wustl.edu	37	6	44198193	44198193	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001078174.1	+1	reviewed	p.S188	0.002	49	0%	26	34.6%	7	0%	-	-	-	HMMPfam_Nucleoside_tran
FILIP1	27145	genome.wustl.edu	37	6	76072525	76072525	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015687.2	-1	validated	p.R129*	1.000	67	0%	73	27.4%	0	-	-	-	-	HMMPfam_CortBP2
PNISR	25957	genome.wustl.edu	37	6	99849181	99849183	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015491.1	-1	validated	p.S551in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ARMC2	84071	genome.wustl.edu	37	6	109190136	109190136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_032131.4	+1	validated	p.R134H	0.996	44	2.3%	42	38.1%	7	14.2%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
FAM54A	113115	genome.wustl.edu	37	6	136560837	136560837	+	Silent	SNP	T	T	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001099286.1	-1	validated	p.P212	0.719	96	0%	192	40.1%	5	20%	-	-	-	HMMPfam_DUF729
MAP7	9053	genome.wustl.edu	37	6	136683831	136683831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_003980.3	-1	reviewed	p.A428V	0.013	42	0%	29	44.8%	5	0%	unknown(0)	tolerated(1)	-	NULL
SDK1	221935	genome.wustl.edu	37	7	4008911	4008911	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_152744.3	+1	validated	p.G523	1.000	22	0%	41	51.2%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ZDHHC4	55146	genome.wustl.edu	37	7	6620230	6620230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001134387.1	+1	validated	p.S13L	0.001	323	0%	362	43.6%	22	50%	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21847595	21847595	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_003777.3	+1	reviewed	p.Y3427	0.001	70	0%	59	10.2%	1	0%	-	-	-	NULL
IKZF1	10320	genome.wustl.edu	37	7	50455151	50455151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000331340	+1	known	p.P233L	1.000	30	0%	49	49%	0	-	benign(0.025)	tolerated(0.09)	neutral(0.297)	NULL
GRM3	2913	genome.wustl.edu	37	7	86469106	86469106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_000840.2	+1	reviewed	p.R759Q	1.000	89	0%	72	45.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_3
CLDN12	9069	genome.wustl.edu	37	7	90042675	90042675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_012129.3	+1	validated	p.R229S	1.000	39	0%	70	35.7%	2	50%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
MUC3A	4584	genome.wustl.edu	37	7	100550032	100550033	+	In_Frame_Ins	INS	-	-	CCT	rs111723000		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	XM_001725354.2	+1	model	p.208in_frame_insS	0.165:0.003	-	-	-	-	-	-	-	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100612955	100612956	+	In_Frame_Ins	INS	-	-	CTG	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000379442	+1	known	p.19in_frame_insA	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100636231	100636231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000379442	+1	known	p.T939M	0.002	304	0%	325	14.2%	0	-	probably_damaging(1)	-	-	NULL
CHRM2	1129	genome.wustl.edu	37	7	136700369	136700369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_000739.2	+1	reviewed	p.D253N	0.958	45	0%	22	27.3%	0	-	benign(0.018)	tolerated(0.36)	neutral(0.021)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
EPHB6	2051	genome.wustl.edu	37	7	142561896	142561896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004445.3	+1	reviewed	p.A113V	0.997	6	0.000	10	0.500	4	75%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
OR7E8P	346708	genome.wustl.edu	37	8	12542232	12542232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000317826	-1	known	p.C152Y	1.000	64	0%	132	42.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
PDGFRL	5157	genome.wustl.edu	37	8	17486234	17486234	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_006207.1	+1	reviewed	p.A248	0.004	58	0%	53	20.8%	0	-	-	-	-	superfamily_Immunoglobulin
CCDC25	55246	genome.wustl.edu	37	8	27614246	27614246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_018246.2	-1	validated	p.R53Q	1.000	145	0.7%	178	37.6%	7	28.5%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_DUF814
HMBOX1	79618	genome.wustl.edu	37	8	28908593	28908593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001135726.1	+1	validated	p.A395V	1.000	106	0%	68	50%	1	100%	benign(0.04)	tolerated(0.28)	neutral(0.034)	NULL
ASH2L	9070	genome.wustl.edu	37	8	37967910	37967910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004674.3	+1	validated	p.F139L	1.000	111	0%	144	38.2%	7	28.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CYP7B1	9420	genome.wustl.edu	37	8	65537090	65537090	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004820.3	-1	reviewed	p.P43	1.000	112	0%	196	48%	0	-	-	-	-	superfamily_Cytochrome P450
FAM91A1	157769	genome.wustl.edu	37	8	124781001	124781001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_144963.2	+1	validated	p.A20V	1.000	14	0.000	8	0.875	0	-	benign(0.174)	tolerated(0.49)	neutral(0.027)	NULL
KIF24	347240	genome.wustl.edu	37	9	34256198	34256198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_194313.2	-1	validated	p.R1136H	0.144	13	0%	12	66.7%	2	0%	benign(0.002)	tolerated(0.59)	neutral(0.004)	NULL
C9orf71	169693	genome.wustl.edu	37	9	71152302	71152302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_153237.1	-1	provisional	p.T129M	0.010	82	0%	32	28.1%	5	60%	probably_damaging(0.969)	tolerated(0.22)	neutral(0.453)	NULL
APBA1	320	genome.wustl.edu	37	9	72130951	72130951	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001163.3	-1	reviewed	p.D392	0.113	19	0%	15	26.7%	0	-	-	-	-	NULL
ZCCHC6	79670	genome.wustl.edu	37	9	88938314	88938314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_024617.3	-1	validated	p.E784G	0.089	162	0%	171	47.4%	2	50%	benign(0.014)	deleterious(0)	neutral(0.445)	NULL
BAAT	570	genome.wustl.edu	37	9	104130497	104130497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001127610.1	-1	reviewed	p.A192T	0.985	113	0%	83	37.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF53474
SVEP1	79987	genome.wustl.edu	37	9	113209210	113209210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_153366.3	-1	validated	p.P1411S	1.000	139	0%	220	38.2%	0	-	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
CNTRL	11064	genome.wustl.edu	37	9	123912589	123912589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_007018.4	+1	reviewed	p.A1264V	1.000	107	0%	66	33.3%	1	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ZBTB6	10773	genome.wustl.edu	37	9	125673282	125673282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_006626.4	-1	provisional	p.T357I	0.015	59	0%	79	36.7%	1	0%	benign(0.072)	tolerated(0.12)	neutral(0.266)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NAIF1	203245	genome.wustl.edu	37	9	130825822	130825822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_197956.3	-1	validated	p.R290Q	1.000	26	0%	15	33.3%	4	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MED22	6837	genome.wustl.edu	37	9	136213509	136213509	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_133640.3	-1	reviewed	p.Q3	0.991	58	0%	60	45%	1	0%	-	-	-	HMMPfam_SURF5
BRD3	8019	genome.wustl.edu	37	9	136910513	136910513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_007371.3	-1	reviewed	p.A373T	1.000	11	0%	19	42.1%	6	50%	probably_damaging(0.957)	tolerated(0.06)	deleterious(0.723)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
KCNT1	57582	genome.wustl.edu	37	9	138669247	138669247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_020822.2	+1	validated	p.V805I	1.000	25	0%	26	42.3%	0	-	possibly_damaging(0.842)	deleterious(0.03)	deleterious(0.686)	NULL
FAM208B	54906	genome.wustl.edu	37	10	5803347	5803347	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_017782.4	+1	validated	p.R2363*	0.085	125	0%	145	46.9%	26	34.6%	-	-	-	NULL
ARMC4	55130	genome.wustl.edu	37	10	28149666	28149666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_018076.2	-1	validated	p.R970H	0.999	47	0%	36	27.8%	13	61.5%	benign(0.083)	tolerated(0.15)	neutral(0.247)	HMMSmart_SM00185,superfamily_ARM repeat
ITGB1	3688	genome.wustl.edu	37	10	33212526	33212526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_033667.2	-1	reviewed	p.M310T	1.000	80	0%	103	37.9%	13	38.4%	possibly_damaging(0.895)	tolerated(0.59)	neutral(0.357)	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300
ALOX5	240	genome.wustl.edu	37	10	45941070	45941072	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_000698.2	+1	reviewed	p.K656in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
ZCCHC24	219654	genome.wustl.edu	37	10	81154182	81154182	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000372333	-1	known	p.R95*	0.269	56	0%	37	43.2%	0	-	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000371953	+1	known	p.R130G	1.000	181	0%	249	41%	26	19.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PYROXD2	84795	genome.wustl.edu	37	10	100159901	100159901	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_032709.2	-1	validated	p.E143	0.999	27	0%	28	35.7%	0	-	-	-	-	superfamily_SSF51905
CALHM3	119395	genome.wustl.edu	37	10	105233278	105233278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001129742.1	-1	validated	p.V243M	1.000	4	0.000	9	0.556	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
ACSL5	51703	genome.wustl.edu	37	10	114177682	114177682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_016234.3	+1	reviewed	p.A489T	1.000	78	0%	69	31.9%	12	16.6%	benign(0.417)	tolerated(0.11)	neutral(0.407)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
FGFR2	2263	genome.wustl.edu	37	10	123279677	123279677	+	Missense_Mutation	SNP	G	G	C	rs79184941	byCluster	TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_022970.3	-1	reviewed	p.S252W	1.000	43	0%	48	31.2%	12	41.6%	probably_damaging(0.963)	tolerated(0.07)	deleterious(0.725)	NULL
CDHR5	53841	genome.wustl.edu	37	11	619357	619357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_021924.4	-1	reviewed	p.A443T	0.001	47	0%	42	47.6%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	superfamily_Cadherin-like
MUC5B	727897	genome.wustl.edu	37	11	1270448	1270448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_002458.1	+1	validated	p.S4116N	0.001	83	0%	89	10.1%	0	-	unknown(0)	-	-	NULL
OR51B6	390058	genome.wustl.edu	37	11	5373165	5373165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001004750.1	+1	provisional	p.G143D	0.929	137	0%	141	27.7%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_7tm_1,superfamily_SSF81321
ANO3	63982	genome.wustl.edu	37	11	26463464	26463464	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_031418.2	+1	validated	e2-1	1.000	64	0%	116	46.6%	0	-	-	-	-	-
DCDC5	100506627	genome.wustl.edu	37	11	30944140	30944140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	XM_002343054.1	-1	model	p.I166V	0.039	269	0%	298	44%	0	-	benign(0.026)	tolerated(0.86)	neutral(0.002)	superfamily_Doublecortin (DC)
CSTF3	1479	genome.wustl.edu	37	11	33124658	33124658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001326.2	-1	reviewed	p.A220T	1.000	273	0%	393	42.5%	3	33.3%	benign(0.087)	tolerated(0.21)	neutral(0.050)	superfamily_TPR-like
ZBTB3	79842	genome.wustl.edu	37	11	62520788	62520788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_024784.3	-1	validated	p.R167W	1.000	27	0%	20	40%	2	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
KCNK7	10089	genome.wustl.edu	37	11	65361004	65361004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_033347.1	-1	reviewed	p.G221S	0.020	16	0%	12	41.7%	0	-	benign(0.426)	deleterious(0.01)	deleterious(0.544)	superfamily_Voltage-gated potassium channels
SPTBN2	6712	genome.wustl.edu	37	11	66478492	66478492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_006946.2	-1	reviewed	p.V261M	1.000	47	0%	67	41.8%	3	0%	possibly_damaging(0.816)	tolerated(0.18)	neutral(0.364)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
INTS4	92105	genome.wustl.edu	37	11	77594924	77594924	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_033547.3	-1	validated	p.R889	0.474	61	0%	36	38.9%	39	41%	-	-	-	NULL
ENSG00000214391	0	genome.wustl.edu	37	11	90016631	90016631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000318973	+1	known	p.A269V	1.000	135	0%	144	41.7%	0	-	-	-	-	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
KIAA1731	85459	genome.wustl.edu	37	11	93417145	93417145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_033395.1	+1	validated	p.L322P	1.000	62	0%	74	28.4%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
PIWIL4	143689	genome.wustl.edu	37	11	94301960	94301960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_152431.2	+1	validated	p.R51K	0.000	164	0%	250	44.8%	0	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
PGR	5241	genome.wustl.edu	37	11	100920786	100920786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_000926.4	-1	reviewed	p.R788G	1.000	81	0%	47	72.3%	5	20%	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
CXCR5	643	genome.wustl.edu	37	11	118764338	118764338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001716.3	+1	validated	p.D29N	0.024	16	0%	19	47.4%	0	-	benign(0.006)	tolerated(0.52)	neutral(0.009)	superfamily_Family A G protein-coupled receptor-like
PRDM10	56980	genome.wustl.edu	37	11	129793189	129793189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_020228.2	-1	reviewed	p.S667L	1.000	63	1.6%	53	39.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_C2H2 and C2HC zinc fingers
IGSF9B	22997	genome.wustl.edu	37	11	133807732	133807732	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_014987.1	-1	validated	p.T178	0.000	51	0%	38	52.6%	1	0%	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
FBXL14	144699	genome.wustl.edu	37	12	1702201	1702201	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_152441.2	-1	validated	p.T344	0.576	17	0%	15	40%	14	35.7%	-	-	-	superfamily_SSF52047
GAPDH	2597	genome.wustl.edu	37	12	6646115	6646115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_002046.3	+1	reviewed	p.D89G	1.000	42	0%	32	59.4%	2550	46.1%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_Gp_dh_N,superfamily_NAD(P)-binding Rossmann-fold domains
KLHDC5	57542	genome.wustl.edu	37	12	27934137	27934137	+	Splice_Site	SNP	T	T	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_020782.1	+1	validated	e1+2	1.000	14	0%	23	56.5%	2	100%	-	-	-	-
KIF21A	55605	genome.wustl.edu	37	12	39716651	39716651	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_017641.3	-1	validated	p.L1151	1.000	99	0%	95	49.5%	3	66.6%	-	-	-	superfamily_WD40 repeat-like
TMEM106C	79022	genome.wustl.edu	37	12	48359109	48359109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001143842.1	+1	validated	p.R78G	1.000	137	0%	197	41.1%	35	48.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF1356
MCRS1	10445	genome.wustl.edu	37	12	49952730	49952730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001012300.1	-1	validated	p.G413S	0.999	40	0%	55	41.8%	69	52.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_FHA,HMMSmart_FHA,superfamily_SMAD_FHA
NCKAP5L	57701	genome.wustl.edu	37	12	50187163	50187163	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000433948	-1	known	p.R819*	0.811	18	0%	13	30.8%	23	26%	-	-	-	NULL
MIR1293	100302220	genome.wustl.edu	37	12	50627995	50627997	+	RNA	DEL	TTT	TTT	-	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	TTT	TTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000408677	-1	known	NULL	0.541	-	-	-	-	-	-	-	-	-	-
ZBTB39	9880	genome.wustl.edu	37	12	57398045	57398045	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_014830.1	-1	provisional	p.T219	0.000	46	0%	53	43.4%	0	-	-	-	-	NULL
MBD6	114785	genome.wustl.edu	37	12	57920771	57920771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_052897.3	+1	validated	p.S615P	0.965	139	0%	104	19.2%	49	26.5%	unknown(0)	deleterious(0.02)	-	NULL
NAV3	89795	genome.wustl.edu	37	12	78579429	78579429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_014903.4	+1	validated	p.R1892H	1.000	233	0%	152	17.8%	0	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
TMCC3	57458	genome.wustl.edu	37	12	94975882	94975882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_020698.2	-1	validated	p.H171N	1.000	25	0%	19	42.1%	0	-	benign(0.005)	tolerated(0.37)	neutral(0.019)	HMMPfam_Tmemb_cc2
CCDC53	51019	genome.wustl.edu	37	12	102455066	102455066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_016053.2	-1	validated	p.T37I	1.000	169	0%	272	40.1%	28	39.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF2360
CCDC63	160762	genome.wustl.edu	37	12	111311755	111311755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_152591.1	+1	provisional	p.R160H	0.438	96	1%	151	42.4%	0	-	benign(0.064)	tolerated(0.12)	neutral(0.265)	NULL
OAS2	4939	genome.wustl.edu	37	12	113440758	113440758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_016817.2	+1	reviewed	p.P344T	0.225	113	0.9%	58	27.6%	3	33.3%	possibly_damaging(0.802)	deleterious(0)	deleterious(0.746)	superfamily_Nucleotidyltransferase
MED13L	23389	genome.wustl.edu	37	12	116408546	116408546	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015335.3	-1	validated	p.R1974*	1.000	69	0%	44	34.1%	1	100%	-	-	-	NULL
PUS1	80324	genome.wustl.edu	37	12	132426095	132426095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_025215.5	+1	reviewed	p.C268Y	1.000	41	0%	31	32.3%	53	45.2%	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	HMMPfam_PseudoU_synth_1,superfamily_Pseudouridine synthase
SACS	26278	genome.wustl.edu	37	13	23929962	23929962	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000455470	-1	known	p.R163W	0.012	163	0%	228	47.4%	1	0%	-	-	-	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
MTUS2	23281	genome.wustl.edu	37	13	30062109	30062109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001033602.2	+1	validated	p.I1168V	0.412	28	0%	34	47.1%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
SLITRK6	84189	genome.wustl.edu	37	13	86368978	86368978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_032229.2	-1	validated	p.E556K	0.979	165	0%	149	42.3%	0	-	benign(0.003)	tolerated(0.14)	neutral(0.249)	HMMSmart_SM00082,superfamily_L domain-like
LOC643677	643677	genome.wustl.edu	37	13	103398758	103398758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	XM_002344085.1	-1	model	p.A1359V	0.000	164	0.6%	136	52.2%	0	-	-	-	-	NULL
MYO16	23026	genome.wustl.edu	37	13	109496759	109496759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015011.1	+1	validated	p.A367V	0.857	106	0%	70	38.6%	0	-	benign(0.386)	tolerated(0.07)	neutral(0.443)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CUL4A	8451	genome.wustl.edu	37	13	113891192	113891192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001008895.1	+1	validated	p.I302V	1.000	201	0%	410	43.9%	7	57.1%	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_Cullin,superfamily_Cullin repeat
POTEG	404785	genome.wustl.edu	37	14	19553610	19553610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001005356.2	+1	validated	p.C65F	0.029	94	0%	113	8.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
POTEG	404785	genome.wustl.edu	37	14	19571395	19571395	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001005356.2	+1	validated	p.G392*	0.000	736	0%	824	11.8%	0	-	-	-	-	NULL
POTEM	641455	genome.wustl.edu	37	14	20020027	20020027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001145442.1	-1	provisional	p.C65F	0.040	94	0%	75	9.3%	0	-	unknown(0)	deleterious(0)	-	NULL
TTC5	91875	genome.wustl.edu	37	14	20768861	20768861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_138376.2	-1	validated	p.E101K	0.966	48	0%	38	36.8%	5	60%	benign(0)	tolerated(0.78)	neutral(0.001)	superfamily_SSF48452
NOVA1	4857	genome.wustl.edu	37	14	27064736	27064736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_002515.2	-1	reviewed	p.V54I	1.000	209	0%	252	42.1%	0	-	unknown(0)	tolerated(0.85)	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
TRMT5	57570	genome.wustl.edu	37	14	61445998	61445998	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_020810.2	-1	validated	p.I206	0.960	129	0%	254	47.2%	7	42.8%	-	-	-	HMMPfam_Met_10,superfamily_SSF53335
PSMC1	5700	genome.wustl.edu	37	14	90734747	90734747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_002802.2	+1	reviewed	p.G291W	1.000	97	0%	117	29.9%	82	23.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SERPINA1	5265	genome.wustl.edu	37	14	94849388	94849388	+	Missense_Mutation	SNP	G	G	A	rs28931570	byCluster;byFrequency;by1000genomes	TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_000295.4	-1	reviewed	p.R63C	0.974	84	0%	88	53.4%	114	34.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
MIR409	574413	genome.wustl.edu	37	14	101531680	101531680	+	RNA	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000362237	+1	known	NULL	1.000	31	0%	30	36.7%	0	-	-	-	-	-
ACTC1	70	genome.wustl.edu	37	15	35085610	35085610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_005159.4	-1	reviewed	p.R97H	1.000	41	2.4%	35	34.3%	0	-	benign(0.166)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
SHF	90525	genome.wustl.edu	37	15	45490991	45490991	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_138356.2	-1	validated	p.R94	0.000	48	0%	46	50%	1	0%	-	-	-	NULL
DMXL2	23312	genome.wustl.edu	37	15	51792189	51792189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015263.3	-1	validated	p.Y1078H	1.000	125	0%	284	29.2%	0	-	benign(0.067)	tolerated(0.53)	neutral(0.012)	NULL
IGDCC3	9543	genome.wustl.edu	37	15	65622724	65622724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004884.3	-1	validated	p.V589M	1.000	24	0%	20	50%	0	-	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TBC1D21	161514	genome.wustl.edu	37	15	74177418	74177418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_153356.1	+1	provisional	p.L185F	1.000	30	0%	38	42.1%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_TBC,superfamily_RabGAP_TBC
CLK3	1198	genome.wustl.edu	37	15	74922131	74922131	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001130028.1	+1	reviewed	p.R608	1.000	25	0%	24	58.3%	81	49.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SNUPN	10073	genome.wustl.edu	37	15	75909889	75909889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001042581.1	-1	reviewed	p.R55W	1.000	343	0%	546	40.7%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SH2D7	646892	genome.wustl.edu	37	15	78393428	78393428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001101404.1	+1	provisional	p.R278K	0.139	18	0%	17	52.9%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
SLCO3A1	28232	genome.wustl.edu	37	15	92638148	92638148	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_013272.3	+1	validated	p.C228	0.991	254	0%	371	41.2%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
ITFG3	83986	genome.wustl.edu	37	16	313266	313266	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000424016	+1	known	p.E18*	0.675	7	0.000	13	0.462	51	47%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MSLNL	401827	genome.wustl.edu	37	16	830748	830767	+	Frame_Shift_Del	DEL	GTGTGCACGGGTAGGTGACG	GTGTGCACGGGTAGGTGACG	-	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	GTGTGCACGGGTAGGTGACG	GTGTGCACGGGTAGGTGACG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001025190.1	-1	provisional	p.V79fs	0.379:0.375:0.374:0.201:0.160:0.068:0.036:0.007:0.004:0.001:0.001:0.000:0.001:0.003:0.009:0.010:0.010:0.006:0.004:0.006	-	-	-	-	-	-	-	-	-	NULL
CREBBP	1387	genome.wustl.edu	37	16	3777856	3777856	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004380.2	-1	reviewed	p.G2398*	1.000	42	0%	35	25.7%	31	35.4%	-	-	-	NULL
LOC342346	342346	genome.wustl.edu	37	16	4643237	4643237	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001145011.1	+1	predicted	p.T929	0.984	8	0.000	12	0.417	0	-	-	-	-	NULL
ABCC6	368	genome.wustl.edu	37	16	16308268	16308268	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001171.5	-1	reviewed	p.Y171*	0.969	31	0%	42	28.6%	0	-	-	-	-	NULL
ABCC6P1	653190	genome.wustl.edu	37	16	18591553	18591553	+	RNA	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NR_003569.1	+1	provisional	NULL	0.906	33	0%	37	29.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	-
ACSM3	6296	genome.wustl.edu	37	16	20797562	20797562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_202000.2	+1	validated	p.S436P	0.001	167	0%	177	42.9%	5	40%	unknown(0)	-	-	NULL
IGSF6	10261	genome.wustl.edu	37	16	21658498	21658498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_005849.2	-1	validated	p.A128V	0.006	39	0%	54	42.6%	11	0%	benign(0.039)	deleterious(0.04)	neutral(0.351)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
PRKCB	5579	genome.wustl.edu	37	16	23999887	23999887	+	Silent	SNP	C	C	T	rs115750906	by1000genomes	TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_002738.6	+1	reviewed	p.G88	0.046	130	0%	117	41%	0	-	-	-	-	HMMPfam_C1_1,superfamily_Cysteine-rich domain
GSG1L	146395	genome.wustl.edu	37	16	27974490	27974490	+	Silent	SNP	C	C	T	rs189933895	by1000genomes	TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001109763.1	-1	validated	p.P128	0.789	54	0%	55	50.9%	0	-	-	-	-	HMMPfam_GSG-1
CTCF	10664	genome.wustl.edu	37	16	67654643	67654643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_006565.2	+1	reviewed	p.R377H	1.000	38	0%	62	51.6%	11	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
DHODH	1723	genome.wustl.edu	37	16	72057419	72057419	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001361.3	+1	reviewed	p.D340	0.943	22	0%	23	21.7%	13	7.6%	-	-	-	PatternScan_DHODEHASE_2,HMMPfam_DHO_dh,superfamily_SSF51395
PSMD7	5713	genome.wustl.edu	37	16	74334017	74334017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_002811.3	+1	reviewed	p.G27S	1.000	152	0%	174	50%	22	31.8%	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_Mov34,HMMSmart_JAB_MPN
CNTNAP4	85445	genome.wustl.edu	37	16	76486506	76486506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_138994.3	+1	validated	p.E318D	0.006	179	0%	219	50.2%	0	-	benign(0.013)	tolerated(0.52)	neutral(0.009)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
VAT1L	57687	genome.wustl.edu	37	16	78011494	78011494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_020927.1	+1	provisional	p.M388V	1.000	80	0%	105	34.3%	0	-	benign(0.407)	tolerated(1)	neutral(0.132)	NULL
FANCA	2175	genome.wustl.edu	37	16	89809342	89809342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_000135.2	-1	reviewed	p.L1211I	0.945	72	0%	60	35%	9	11.1%	possibly_damaging(0.49)	tolerated(0.19)	neutral(0.213)	NULL
KIAA0664	23277	genome.wustl.edu	37	17	2598369	2598369	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015229.3	-1	validated	p.A839	0.106	21	0%	19	47.4%	11	36.3%	-	-	-	NULL
KRBA2	124751	genome.wustl.edu	37	17	8274834	8274834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_213597.2	-1	provisional	p.P7S	0.009	71	0%	96	31.2%	0	-	unknown(0)	-	-	NULL
USP43	124739	genome.wustl.edu	37	17	9603566	9603566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_153210.3	+1	validated	p.R512H	0.975	60	0%	52	40.4%	3	0%	probably_damaging(0.997)	tolerated(0.55)	deleterious(0.473)	HMMPfam_UCH,superfamily_SSF54001
LOC100287863	100287863	genome.wustl.edu	37	17	37331704	37331704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	XM_002343513.1	+1	model	p.P6L	0.998	33	0%	17	58.8%	4	0%	-	-	-	NULL
GAST	2520	genome.wustl.edu	37	17	39871803	39871803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_000805.3	+1	reviewed	p.N39D	0.008	19	0%	18	38.9%	0	-	benign(0.224)	deleterious(0)	neutral(0.467)	HMMPfam_Gastrin
WNK4	65266	genome.wustl.edu	37	17	40936018	40936018	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_032387.4	+1	reviewed	p.L285	0.144	25	0%	29	37.9%	4	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ACSF2	80221	genome.wustl.edu	37	17	48551137	48551138	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_025149.4	+1	validated	p.P532fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
ACSF2	80221	genome.wustl.edu	37	17	48551331	48551331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_025149.4	+1	validated	p.T565M	0.955	68	0%	91	35.2%	37	18.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF56801
MTMR4	9110	genome.wustl.edu	37	17	56572372	56572372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004687.4	-1	validated	p.R1044H	1.000	90	0%	76	10.5%	8	0%	probably_damaging(0.999)	tolerated(0.59)	deleterious(0.495)	NULL
SYNGR2	9144	genome.wustl.edu	37	17	76166923	76166923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004710.3	+1	reviewed	p.C42Y	1.000	14	0%	14	28.6%	85	15.2%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_MARVEL
EPR1	8475	genome.wustl.edu	37	17	76219856	76219857	+	RNA	DEL	TC	TC	-	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NR_002219.1	-1	provisional	NULL	0.000:0.001	-	-	-	-	-	-	-	-	-	-
FOXK2	3607	genome.wustl.edu	37	17	80526021	80526021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_004514.3	+1	reviewed	p.A236T	0.987	43	2.3%	55	45.5%	1	0%	benign(0.007)	tolerated(0.21)	neutral(0.044)	NULL
ANKRD12	23253	genome.wustl.edu	37	18	9256590	9256590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015208.3	+1	validated	p.R1109W	0.996	104	1%	230	40.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
PTPN2	5771	genome.wustl.edu	37	18	12830961	12830961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_002828.2	-1	reviewed	p.R114H	1.000	90	0%	121	47.9%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
FAM59A	64762	genome.wustl.edu	37	18	29890219	29890219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_022751.1	-1	provisional	p.E110D	1.000	200	0%	209	46.9%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
SMAD2	4087	genome.wustl.edu	37	18	45391500	45391501	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001003652.2	-1	reviewed	p.P221fs	0.891:1.000	-	-	-	-	-	-	-	-	-	superfamily_SMAD/FHA domain
SAFB	6294	genome.wustl.edu	37	19	5654396	5654396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_002967.2	+1	reviewed	p.R562W	1.000	154	0%	180	41.1%	55	60%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF54928
DENND1C	79958	genome.wustl.edu	37	19	6475306	6475306	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_024898.2	-1	validated	p.R344	0.938	8	0.000	9	0.444	6	0%	-	-	-	HMMPfam_dDENN,HMMSmart_dDENN
NANOS3	342977	genome.wustl.edu	37	19	13988362	13988362	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001098622.1	+1	provisional	p.G100	1.000	6	0.000	16	0.312	0	-	-	-	-	HMMPfam_zf-nanos
CHERP	10523	genome.wustl.edu	37	19	16631278	16631278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_006387.5	-1	validated	p.R748C	0.996	50	0%	43	23.3%	41	46.3%	unknown(0)	deleterious(0.02)	-	NULL
PLVAP	83483	genome.wustl.edu	37	19	17476280	17476280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_031310.1	-1	provisional	p.R332W	0.062	26	0%	29	41.4%	8	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_PV-1
MAP1S	55201	genome.wustl.edu	37	19	17836983	17836983	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_018174.4	+1	validated	p.L264	1.000	14	0%	19	31.6%	11	27.2%	-	-	-	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31768350	31768350	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_020856.2	-1	validated	p.H783	0.606	95	0%	71	53.5%	0	-	-	-	-	NULL
DMKN	93099	genome.wustl.edu	37	19	35990910	35990910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_033317.3	-1	reviewed	p.A437T	0.015	88	0%	71	53.5%	186	39.7%	possibly_damaging(0.888)	deleterious(0.04)	deleterious(0.696)	NULL
KIRREL2	84063	genome.wustl.edu	37	19	36349434	36349434	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_199180.2	+1	validated	p.S112	0.010	20	0%	21	28.6%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
WDR87	83889	genome.wustl.edu	37	19	38376398	38376398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_031951.3	-1	provisional	p.L2599P	0.012	181	0%	180	34.4%	0	-	unknown(0)	-	-	NULL
ZNF234	10780	genome.wustl.edu	37	19	44661109	44661109	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001144824.1	+1	validated	p.K314fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
CCDC9	26093	genome.wustl.edu	37	19	47761875	47761875	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_015603.2	+1	validated	p.I21	0.986	45	0%	38	36.8%	14	57.1%	-	-	-	NULL
HRC	3270	genome.wustl.edu	37	19	49657958	49657958	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_002152.2	-1	reviewed	p.R179	0.925	56	0%	52	38.5%	0	-	-	-	-	NULL
VSIG10L	147645	genome.wustl.edu	37	19	51840497	51840497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000335624	-1	known	p.R322L	0.139	26	0%	21	42.9%	1	0%	possibly_damaging(0.656)	deleterious(0)	deleterious(0.675)	NULL
KIR3DL1	3811	genome.wustl.edu	37	19	55329012	55329012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_013289.2	+1	reviewed	p.G20S	0.001	219	0%	245	36.7%	0	-	benign(0.013)	tolerated(0.94)	neutral(0.001)	NULL
NLRP8	126205	genome.wustl.edu	37	19	56466271	56466271	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_176811.2	+1	provisional	p.L283	0.402	82	0%	65	41.5%	0	-	-	-	-	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF667	63934	genome.wustl.edu	37	19	56953573	56953576	+	Frame_Shift_Del	DEL	TGAT	TGAT	-	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	TGAT	TGAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_022103.3	-1	validated	p.N263fs	0.000:0.001:0.002:0.023	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF460	10794	genome.wustl.edu	37	19	57802927	57802927	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_006635.3	+1	validated	p.E340Q	0.007	93	0%	65	52.3%	0	-	possibly_damaging(0.644)	tolerated(0.06)	deleterious(0.548)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RASSF2	9770	genome.wustl.edu	37	20	4771179	4771179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_014737.2	-1	reviewed	p.R152H	1.000	34	0%	31	35.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PROKR2	128674	genome.wustl.edu	37	20	5282794	5282794	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_144773.2	-1	reviewed	p.L349	1.000	64	0%	68	42.6%	0	-	-	-	-	superfamily_SSF81321
SNX5	27131	genome.wustl.edu	37	20	17933345	17933345	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_014426.2	-1	reviewed	p.L133	0.021	105	0%	159	35.8%	18	33.3%	-	-	-	HMMPfam_PX,superfamily_PX domain
PAX1	5075	genome.wustl.edu	37	20	21687685	21687685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_006192.3	+1	validated	p.R299Q	1.000	10	0.000	7	0.714	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FOXA2	3170	genome.wustl.edu	37	20	22562838	22562839	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_021784.4	-1	reviewed	p.Q348fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ZNF341	84905	genome.wustl.edu	37	20	32376706	32376706	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_032819.3	+1	validated	p.A623	0.002	85	0%	80	43.8%	4	0%	unknown(0)	tolerated(0.19)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TOP1	7150	genome.wustl.edu	37	20	39744081	39744081	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_003286.2	+1	reviewed	e16+2	1.000	112	0%	170	32.4%	4	100%	-	-	-	-
PTPRT	11122	genome.wustl.edu	37	20	40730844	40730844	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_133170.3	-1	reviewed	p.L1231	1.000	28	0%	23	34.8%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
ARFGEF2	10564	genome.wustl.edu	37	20	47607655	47607655	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_006420.2	+1	reviewed	p.Q965*	1.000	117	0%	116	31.9%	2	0%	-	-	-	superfamily_ARM-type_fold
UBE2V1	7335	genome.wustl.edu	37	20	48700776	48700776	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_021988.4	-1	reviewed	p.R86*	1.000	114	0%	294	35%	31	6.4%	-	-	-	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
LSM14B	149986	genome.wustl.edu	37	20	60705594	60705594	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_144703.2	+1	validated	p.R228*	1.000	83	0%	150	42.7%	7	14.2%	-	-	-	NULL
TTC3	7267	genome.wustl.edu	37	21	38539917	38539917	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001001894.1	+1	validated	p.R1488*	0.002	158	0%	282	39.4%	19	21%	-	-	-	superfamily_Spectrin,superfamily_SSF48452
ZNF295-AS1	150142	genome.wustl.edu	37	21	43444598	43444598	+	RNA	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NR_027273.1	+1	validated	NULL	0.000	137	0%	106	43.4%	11	54.5%	-	-	-	-
PCBP3	54039	genome.wustl.edu	37	21	47330911	47330911	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_020528.2	+1	reviewed	p.Q189H	1.000	20	0%	19	26.3%	0	-	benign(0.009)	tolerated(0.54)	neutral(0.008)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
TRMT2A	27037	genome.wustl.edu	37	22	20100339	20100339	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000404751	-1	known	p.D549	0.000	11	0%	14	35.7%	4	25%	-	-	-	superfamily_SSF53335
ZNF74	7625	genome.wustl.edu	37	22	20748844	20748844	+	RNA	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NR_003253.1	+1	validated	NULL	0.001	16	0%	11	45.5%	0	-	-	-	-	-
TTC28	23331	genome.wustl.edu	37	22	28501515	28501515	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001145418.1	-1	validated	p.H1020L	1.000	44	0%	44	43.2%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
LIMK2	3985	genome.wustl.edu	37	22	31661961	31661961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001031801.1	+1	reviewed	p.G274D	1.000	68	0%	45	31.1%	14	35.7%	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	NULL
PPARA	5465	genome.wustl.edu	37	22	46614297	46614297	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001001928.2	+1	reviewed	p.N169	0.325	76	0%	94	36.2%	0	-	-	-	-	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ALG12	79087	genome.wustl.edu	37	22	50303562	50303562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_024105.3	-1	reviewed	p.P215L	0.993	41	0%	70	14.3%	21	0%	benign(0.008)	tolerated(0.07)	neutral(0.319)	HMMPfam_Glyco_transf_22
P2RY8	286530	genome.wustl.edu	37	X	1585023	1585023	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_178129.4	-1	reviewed	p.A143	0.926	19	0%	20	40%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
DCAF8L2	347442	genome.wustl.edu	37	X	27765641	27765641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001136533.1	+1	provisional	p.G210V	1.000	35	0%	37	51.4%	0	-	-	-	-	superfamily_WD40 repeat-like
OTUD5	55593	genome.wustl.edu	37	X	48780481	48780481	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_017602.3	-1	reviewed	p.V562	1.000	127	0%	130	30%	70	0%	-	-	-	NULL
RAB41	347517	genome.wustl.edu	37	X	69503807	69503807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001032726.2	+1	reviewed	p.T155A	1.000	176	0%	220	40.9%	2	0%	benign(0.009)	deleterious(0.03)	neutral(0.365)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
GDPD2	54857	genome.wustl.edu	37	X	69646793	69646793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_017711.3	+1	reviewed	p.P212S	0.977	158	0%	151	39.7%	0	-	benign(0.138)	deleterious(0)	neutral(0.456)	NULL
ARMCX2	9823	genome.wustl.edu	37	X	100911753	100911753	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_014782.5	-1	reviewed	p.A274	0.000	79	0%	93	58.1%	13	100%	-	-	-	NULL
TMEM31	203562	genome.wustl.edu	37	X	102968606	102968606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_182541.2	+1	validated	p.S63P	0.916	152	0%	177	39.5%	2	0%	benign(0.418)	-	-	NULL
ATG4A	115201	genome.wustl.edu	37	X	107377297	107377297	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_052936.2	+1	reviewed	p.W101C	1.000	209	0%	330	37.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C54
IRS4	8471	genome.wustl.edu	37	X	107976184	107976184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_003604.2	-1	reviewed	p.S1131G	0.105	17	0%	14	28.6%	0	-	benign(0.001)	deleterious(0.05)	neutral(0.345)	NULL
LONRF3	79836	genome.wustl.edu	37	X	118151556	118151556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001031855.1	+1	reviewed	p.S728I	0.999	57	0%	69	40.6%	2	0%	possibly_damaging(0.9)	tolerated(0.12)	deleterious(0.617)	HMMPfam_LON,HMMSmart_SM00464
AKAP14	158798	genome.wustl.edu	37	X	119048729	119048729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_178813.5	+1	reviewed	p.S110N	0.000	139	0%	222	31.1%	27	100%	possibly_damaging(0.873)	tolerated(0.23)	neutral(0.381)	NULL
SPANXN3	139067	genome.wustl.edu	37	X	142596893	142596893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001009609.2	-1	validated	p.K59N	0.000	304	0%	402	36.6%	0	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMPfam_SPAN-X
IDS	3423	genome.wustl.edu	37	X	148571916	148571916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_000202.5	-1	reviewed	p.G312D	0.997	71	0%	63	11.1%	17	5.8%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
PASD1	139135	genome.wustl.edu	37	X	150817142	150817144	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_173493.2	+1	reviewed	p.A232in_frame_del	0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
ATP2B3	492	genome.wustl.edu	37	X	152835148	152835148	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	ENST00000496610	+1	known	NULL	1.000	199	0%	167	40.1%	0	-	-	-	-	-
CLIC2	1193	genome.wustl.edu	37	X	154507295	154507295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LP-01A-12D-A10B-09	TCGA-AP-A0LP-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b48069ca-a19d-461b-9a59-385f14886aac	cdd0300f-b8e6-4804-92aa-7628fa6fb31e	NM_001289.4	-1	reviewed	p.R214H	1.000	146	0%	187	29.9%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Glutathione S-transferase (GST) C-terminal domain
