Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
BCMO1	53630	genome.wustl.edu	37	16	81303769	81303769	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	16	81303769	81303769	T	A	SNP	BCMO1	NM_017429.2	human	genbank	58_37c	+1	reviewed	nonsense	c.849	p.Y283*	0.965	HMMPfam_RPE65	HMMPfam_RPE65	-	no_errors
BRPF1	7862	genome.wustl.edu	37	3	9783065	9783065	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	3	9783065	9783065	A	C	SNP	BRPF1	NM_001003694.1	human	genbank	58_37c	+1	reviewed	missense	c.1796	p.E599A	1.000	NULL	HMMPfam_PWWP,HMMSmart_PWWP,HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMSmart_PHD,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE_PHD_ZnF,HMMSmart_ZnF_C2H2,HMMPfam_EPL1,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SSF63748	-	no_errors
ELOVL5	60481	genome.wustl.edu	37	6	53156612	53156612	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	6	53156612	53156612	G	A	SNP	ELOVL5	NM_021814.3	human	genbank	58_37c	-1	provisional	missense	c.208	p.L70F	1.000	HMMPfam_ELO	HMMPfam_ELO,PatternScan_ELO	-	no_errors
ENSG00000246452	0	genome.wustl.edu	37	X	100871711	100871711	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	X	100871711	100871711	C	G	SNP	ARMCX6	NM_001009584.1	human	genbank	58_37c	-1	validated	5_prime_untranslated_region	c.-101	NULL	0.000	-	-	-	no_errors
GNAS	2778	genome.wustl.edu	37	20	57485019	57485019	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	20	57485019	57485019	A	G	SNP	GNAS	NM_080425.2	human	genbank	58_37c	+1	reviewed	missense	c.2782	p.I928V	1.000	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
HLA-A	3105	genome.wustl.edu	37	6	29911925	29911925	+	Missense_Mutation	SNP	C	C	T	rs149288080	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	6	29911925	29911925	C	T	SNP	HLA-A	NM_002116.6	human	genbank	58_37c	+1	reviewed	missense	c.646	p.H216Y	0.050	HMMPfam_C1-set,superfamily_Immunoglobulin	HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,HMMPfam_MHC_I_C,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
HLA-DRB6	3128	genome.wustl.edu	37	6	32521160	32521160	+	RNA	SNP	C	C	G	rs62621247	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	6	32521160	32521160	C	G	SNP	HLA-DRB6	NR_001298.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.953	-	-	-	pseudogene
LILRA1	11024	genome.wustl.edu	37	19	55107152	55107152	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	19	55107152	55107152	C	T	SNP	LILRA1	NM_006863.1	human	genbank	58_37c	+1	provisional	missense	c.710	p.A237V	0.000	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
MAGEA11	4110	genome.wustl.edu	37	X	148798316	148798316	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	X	148798316	148798316	C	G	SNP	MAGEA11	NM_005366.4	human	genbank	58_37c	+1	reviewed	silent	c.1170	p.A390	0.116	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MPZL1	9019	genome.wustl.edu	37	1	167741689	167741689	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	1	167741689	167741689	C	T	SNP	MPZL1	NM_003953.5	human	genbank	58_37c	+1	validated	nonsense	c.436	p.Q146*	0.446	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9007506	9007506	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	19	9007506	9007506	G	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	silent	c.39462	p.S13154	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
NF1	4763	genome.wustl.edu	37	17	29586058	29586058	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	17	29586058	29586058	G	C	SNP	NF1	NM_001042492.2	human	genbank	58_37c	+1	reviewed	missense	c.4341	p.Q1447H	1.000	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP	HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP	-	no_errors
PCDH19	57526	genome.wustl.edu	37	X	99662740	99662740	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	X	99662740	99662740	G	A	SNP	PCDH19	NM_001105243.1	human	genbank	58_37c	-1	reviewed	missense	c.856	p.R286C	0.115	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PHF6	84295	genome.wustl.edu	37	X	133559244	133559244	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	X	133559244	133559244	A	T	SNP	PHF6	NM_001015877.1	human	genbank	58_37c	+1	reviewed	missense	c.982	p.N328Y	1.000	HMMSmart_SM00249	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RASAL2	9462	genome.wustl.edu	37	1	178411925	178411925	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	1	178411925	178411925	G	A	SNP	RASAL2	NM_170692.2	human	genbank	58_37c	+1	reviewed	missense	c.989	p.R330H	1.000	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,HMMSmart_PH,HMMPfam_RasGAP,HMMSmart_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_Rho_GAP,superfamily_C2_CaLB,superfamily_SSF50729	-	no_errors
SOCS4	122809	genome.wustl.edu	37	14	55510028	55510028	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	14	55510028	55510028	C	A	SNP	SOCS4	NM_080867.2	human	genbank	58_37c	+1	reviewed	missense	c.269	p.S90Y	1.000	NULL	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_SOCS_box,HMMSmart_SM00253,superfamily_SH2 domain	-	no_errors
SYTL4	94121	genome.wustl.edu	37	X	99936233	99936233	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	X	99936233	99936233	G	A	SNP	SYTL4	NM_001129896.2	human	genbank	58_37c	-1	reviewed	missense	c.1549	p.R517W	0.997	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RPH3A_effector,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343	byCluster	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	17	7577121	7577121	G	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.817	p.R273C	0.830	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRANK1	9881	genome.wustl.edu	37	3	36879889	36879889	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	3	36879889	36879889	C	A	SNP	TRANK1	NM_014831.2	human	genbank	58_37c	-1	provisional	missense	c.3709	p.A1237S	0.999	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
