Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
IFI44L	10964	genome.wustl.edu	37	1	79095582	79095582	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_006820.2	+1	validated	p.I235	0.004	182	0%	174	28.7%	11	9%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SYCP1	6847	genome.wustl.edu	37	1	115417186	115417189	+	Splice_Site	DEL	GTGA	GTGA	-	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	GTGA	GTGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_003176.2	+1	validated	e8+1	1.000:1.000	-	-	-	-	-	-	-	-	-	-
CERS2	29956	genome.wustl.edu	37	1	150939049	150939049	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_022075.3	-1	reviewed	p.Y302S	1.000	161	0%	144	29.9%	98	33.6%	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
FCRLB	127943	genome.wustl.edu	37	1	161695631	161695631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_001002901.2	+1	validated	p.P110S	1.000	124	0%	116	26.7%	0	-	benign(0.322)	tolerated(0.39)	neutral(0.117)	HMMSmart_SM00409,superfamily_Immunoglobulin
UCHL5	51377	genome.wustl.edu	37	1	192992090	192992090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_015984.2	-1	validated	p.I271T	1.000	164	0%	261	33.3%	35	25.7%	possibly_damaging(0.897)	deleterious(0)	deleterious(0.798)	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232581277	232581277	+	Silent	SNP	C	C	T	rs140868197	by1000genomes	TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_020808.3	-1	validated	p.T1117	0.913	78	0%	75	20%	5	0%	-	-	-	NULL
WDR33	55339	genome.wustl.edu	37	2	128479537	128479537	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_018383.3	-1	reviewed	p.I515S	1.000	99	0%	158	29.1%	7	42.8%	unknown(0)	deleterious(0)	-	superfamily_WD40_like
KIAA1715	80856	genome.wustl.edu	37	2	176829288	176829288	+	Nonsense_Mutation	SNP	G	G	T	rs181413679	by1000genomes	TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_030650.1	-1	validated	p.Y129*	0.962	145	0%	257	26.8%	5	0%	-	-	-	NULL
SPHKAP	80309	genome.wustl.edu	37	2	228884216	228884216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_001142644.1	-1	validated	p.V452I	1.000	73	0%	88	33%	0	-	benign(0)	tolerated(1)	-	NULL
GRM2	2912	genome.wustl.edu	37	3	51746689	51746689	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_000839.3	+1	reviewed	p.G217	0.001	16	0%	137	93.4%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
FRMD4B	23150	genome.wustl.edu	37	3	69242895	69242895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_015123.1	-1	validated	p.D540N	1.000	59	0%	113	32.7%	9	33.3%	benign(0.03)	tolerated(0.38)	neutral(0.019)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916876	178916876	+	Missense_Mutation	SNP	G	G	A	rs121913287		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_006218.2	+1	reviewed	p.R88Q	1.000	184	0%	334	64.4%	5	100%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
FXR1	8087	genome.wustl.edu	37	3	180687964	180687964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_005087.2	+1	reviewed	p.S474N	1.000	134	0%	141	31.9%	148	41.8%	benign(0.007)	tolerated(0.11)	neutral(0.272)	NULL
LOC441016	441016	genome.wustl.edu	37	4	54442113	54442113	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	XM_496693.4	+1	model	p.P127	0.002	29	0%	32	46.9%	0	-	-	-	-	HMMPfam_HCaRG
FRAS1	80144	genome.wustl.edu	37	4	79202577	79202577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_025074.6	+1	reviewed	p.K366R	0.994	50	0%	59	27.1%	0	-	probably_damaging(0.998)	tolerated(0.88)	deleterious(0.474)	HMMSmart_SM00214
C9	735	genome.wustl.edu	37	5	39311409	39311411	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_001737.3	-1	reviewed	p.V314in_frame_del	0.002:0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_MACPF,HMMSmart_MACPF
DHX29	54505	genome.wustl.edu	37	5	54579264	54579264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_019030.2	-1	validated	p.R578W	0.979	349	0.3%	416	46.6%	9	66.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
PRL	5617	genome.wustl.edu	37	6	22287819	22287819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_000948.4	-1	validated	p.H166Y	1.000	71	0%	107	32.7%	1	0%	benign(0.001)	tolerated(0.55)	neutral(0.007)	HMMPfam_Hormone_1,superfamily_4-helical cytokines
FILIP1	27145	genome.wustl.edu	37	6	76024552	76024552	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_015687.2	-1	validated	p.R332S	0.999	242	0.4%	671	21.8%	1	0%	benign(0.043)	tolerated(0.15)	neutral(0.243)	HMMPfam_CortBP2
PLEKHG1	57480	genome.wustl.edu	37	6	151161857	151161857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_001029884.1	+1	provisional	p.R1328H	0.406	128	0.8%	272	30.5%	9	55.5%	benign(0.012)	deleterious(0.05)	neutral(0.346)	NULL
CHRNA2	1135	genome.wustl.edu	37	8	27327458	27327458	+	Silent	SNP	T	T	C	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_000742.3	-1	reviewed	p.G38	0.004	12	0%	22	40.9%	0	-	-	-	-	NULL
TRHR	7201	genome.wustl.edu	37	8	110100248	110100248	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_003301.4	+1	reviewed	p.S169	0.179	187	0%	360	30.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CSMD3	114788	genome.wustl.edu	37	8	113240997	113240997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_198123.1	-1	validated	p.L3651P	1.000	152	0%	242	29.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CYP11B1	1584	genome.wustl.edu	37	8	143957666	143957666	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_000497.3	-1	reviewed	p.S315	0.943	28	0%	42	50%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
COL5A1	1289	genome.wustl.edu	37	9	137716565	137716565	+	Silent	SNP	C	C	T	rs190912679	by1000genomes	TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	ENST00000371820	+1	known	p.R26W	0.908	25	0%	28	50%	46	2.1%	-	-	-	NULL
CLP1	10978	genome.wustl.edu	37	11	57428510	57428510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_006831.2	+1	validated	p.R294W	1.000	152	0.7%	170	30.6%	29	48.2%	benign(0.279)	deleterious(0.05)	neutral(0.375)	HMMPfam_Clp1
TBX10	347853	genome.wustl.edu	37	11	67401752	67401752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_005995.3	-1	provisional	p.D153N	0.999	8	0.000	16	0.375	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2
FAT3	120114	genome.wustl.edu	37	11	92086748	92086748	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_001008781.2	+1	validated	p.S490	0.001	128	0%	163	28.8%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
UBE4A	9354	genome.wustl.edu	37	11	118239433	118239433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_004788.2	+1	reviewed	p.R70H	1.000	469	0%	567	30.7%	3	0%	possibly_damaging(0.667)	tolerated(0.05)	deleterious(0.581)	NULL
OPCML	4978	genome.wustl.edu	37	11	132527171	132527171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_002545.3	-1	reviewed	p.R71C	1.000	49	0%	79	29.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SPTB	6710	genome.wustl.edu	37	14	65241939	65241939	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_001024858.2	-1	reviewed	p.D1582	0.006	26	0%	38	26.3%	1	100%	-	-	-	HMMPfam_Spectrin,superfamily_Spectrin
NPRL3	8131	genome.wustl.edu	37	16	138772	138773	+	Frame_Shift_Ins	INS	-	-	G	rs75244038	byCluster;by1000genomes	TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	ENST00000399953	-1	known	p.S489fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_UPF0171
LOC654780	654780	genome.wustl.edu	37	16	84228613	84228613	+	RNA	DEL	T	T	-	rs140074913	byCluster;by1000genomes	TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	XR_040612.2	-1	model	NULL	0.005	-	-	-	-	-	-	-	-	-	-
ATP1B2	482	genome.wustl.edu	37	17	7557429	7557429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_001678.3	+1	reviewed	p.E136K	1.000	454	0%	268	48.5%	5	0%	benign(0.054)	tolerated(0.91)	neutral(0.004)	HMMPfam_Na_K-ATPase
TP53	7157	genome.wustl.edu	37	17	7577153	7577153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_000546.4	-1	reviewed	p.G262V	1.000	79	0%	55	36.4%	48	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_P53
NUFIP2	57532	genome.wustl.edu	37	17	27613774	27613774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_020772.2	-1	validated	p.N413S	0.081	99	0%	117	31.6%	18	38.8%	benign(0)	tolerated(1)	-	NULL
STAT3	6774	genome.wustl.edu	37	17	40489799	40489799	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_139276.2	-1	reviewed	p.A209	0.017	70	0%	92	21.7%	39	38.4%	-	-	-	HMMPfam_STAT_alpha,superfamily_STAT
DNAH17	8632	genome.wustl.edu	37	17	76475711	76475711	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	ENST00000389840	-1	known	p.H2572fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CEP192	55125	genome.wustl.edu	37	18	13056360	13056360	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_032142.3	+1	validated	p.S661	0.000	82	0%	170	37.1%	3	66.6%	-	-	-	NULL
LOC646359	646359	genome.wustl.edu	37	18	14378543	14378543	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	XM_929288.3	-1	model	p.R74*	0.005	20	0%	38	47.4%	0	-	-	-	-	HMMPfam_TRF,superfamily_Telomeric repeat binding factor (TRF) dimerisation domain
ZNF343	79175	genome.wustl.edu	37	20	2464696	2464696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_024325.4	-1	validated	p.R304Q	0.000	189	0%	154	45.5%	2	50%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
EMILIN3	90187	genome.wustl.edu	37	20	39991058	39991058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_052846.1	-1	validated	p.C384Y	1.000	12	0%	17	47.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000210082	0	genome.wustl.edu	37	MT	2697	2697	+	RNA	SNP	G	G	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	ENST00000387347	+1	known	NULL	NULL	66	0%	61	90.2%	2668	27.6%	-	-	-	-
ENSG00000198888	0	genome.wustl.edu	37	MT	3643	3643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	ENST00000361390	+1	known	p.V113I	NULL	101	0%	106	88.7%	8036	90.5%	possibly_damaging(0.615)	deleterious(0)	deleterious(0.658)	HMMPfam_NADHdh
SMC1A	8243	genome.wustl.edu	37	X	53440264	53440264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_006306.2	-1	reviewed	p.A178V	1.000	148	0%	113	51.3%	7	42.8%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_SMC_N,superfamily_SSF52540
GRIA3	2892	genome.wustl.edu	37	X	122599615	122599615	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_000828.4	+1	reviewed	p.A805V	1.000	142	0%	73	38.4%	1	0%	-	-	-	NULL
CLIC2	1193	genome.wustl.edu	37	X	154508586	154508586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06B-01A-11W-A027-09	TCGA-AX-A06B-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	632c4bdd-24fd-404b-a4d3-bddec5defd11	acfa7e26-a9fa-43ea-9eac-bcdf23e962e8	NM_001289.4	-1	reviewed	p.R145H	0.998	202	0%	203	46.3%	8	12.5%	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	superfamily_Glutathione S-transferase (GST) C-terminal domain
