Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
PER3	8863	broad.mit.edu	37	1	7863187	7863187	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr1:7863187C>G	uc001aoo.2	+	8	1125	c.950C>G	c.(949-951)TCT>TGT	p.S317C	PER3_uc009vmg.1_Missense_Mutation_p.S318C|PER3_uc009vmh.1_Missense_Mutation_p.S318C|PER3_uc001aop.2_Missense_Mutation_p.S318C|PER3_uc010nzw.1_5'UTR|PER3_uc001aon.2_Missense_Mutation_p.S317C	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	317	PAS 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		GAAGATCGTTCTCTGATGGTT	0.423000													44	59					0	0	0	0
COL16A1	1307	broad.mit.edu	37	1	32154073	32154073	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr1:32154073C>T	uc001btk.1	-	26	2163	c.1798G>A	c.(1798-1800)GAG>AAG	p.E600K	COL16A1_uc001btj.1_Missense_Mutation_p.E429K|COL16A1_uc001btl.3_Missense_Mutation_p.E600K	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	600	Triple-helical region 7 (COL7) with 1 imperfection.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		CTCACCTTCTCTCCTTTCAGC	0.567000													41	107					0	0	0	0
ROR1	4919	broad.mit.edu	37	1	64643424	64643424	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr1:64643424G>T	uc001dbj.2	+	9	2099	c.1700G>T	c.(1699-1701)AGA>ATA	p.R567I	uc001dbm.2_5'Flank	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	567	Cytoplasmic (Potential).|Protein kinase.		R -> I (in a colorectal adenocarcinoma sample; somatic mutation).		transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding	p.R567I(1)		ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						CTCATCATGAGATCCCCACAC	0.468000													28	49					2.79863e-10	3.00341e-10	1	0
CD2	914	broad.mit.edu	37	1	117297336	117297336	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr1:117297336C>T	uc001egu.3	+	2	174	c.145C>T	c.(145-147)CAA>TAA	p.Q49*	CD2_uc010owz.1_Nonsense_Mutation_p.Q49*|CD2_uc010oxa.1_Nonsense_Mutation_p.Q49*	NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	49	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	TCCTAGTTTTCAAATGAGTGA	0.373000													32	43					0	0	0	0
RFX5	5993	broad.mit.edu	37	1	151315612	151315612	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr1:151315612C>T	uc001exv.1	-	11	1115	c.901G>A	c.(901-903)GCA>ACA	p.A301T	RFX5_uc001exw.1_Missense_Mutation_p.A301T|RFX5_uc009wmr.1_Missense_Mutation_p.A301T|RFX5_uc010pcx.1_Missense_Mutation_p.A261T	NM_001025603	NP_001020774	P48382	RFX5_HUMAN	regulatory factor X, 5	301						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TCTCCACGTGCGAGAGGACCG	0.542000													26	74					0	0	0	0
DISC1	27185	broad.mit.edu	37	1	231830149	231830149	+	Silent	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr1:231830149C>T	uc001huz.2	+	2	698	c.645C>T	c.(643-645)CTC>CTT	p.L215L	TSNAX-DISC1_uc010pwe.1_Silent_p.L170L|TSNAX-DISC1_uc010pwf.1_Silent_p.L170L|TSNAX-DISC1_uc010pwg.1_Silent_p.L204L|TSNAX-DISC1_uc010pwh.1_Silent_p.L170L|TSNAX-DISC1_uc010pwi.1_Silent_p.L170L|TSNAX-DISC1_uc010pwj.1_Silent_p.L204L|TSNAX-DISC1_uc010pwk.1_Silent_p.L204L|TSNAX-DISC1_uc010pwl.1_RNA|DISC1_uc010pwo.1_Silent_p.L215L|DISC1_uc010pwp.1_Silent_p.L215L|DISC1_uc010pwq.1_Silent_p.L215L|DISC1_uc010pwr.1_Silent_p.L215L|DISC1_uc010pws.1_Silent_p.L215L|DISC1_uc010pwt.1_Silent_p.L215L|DISC1_uc010pwu.1_Intron|DISC1_uc010pwv.1_RNA|DISC1_uc010pww.1_Silent_p.L215L|DISC1_uc010pwx.1_RNA|DISC1_uc010pwy.1_RNA|DISC1_uc010pwz.1_RNA|DISC1_uc010pxa.1_RNA|DISC1_uc001huy.2_Silent_p.L215L|DISC1_uc010pxb.1_Silent_p.L215L|DISC1_uc010pxc.1_Silent_p.L215L|DISC1_uc010pxd.1_5'UTR|DISC1_uc010pxe.1_Silent_p.L215L|DISC1_uc009xfr.2_Silent_p.L170L|DISC1_uc010pxf.1_Silent_p.L215L|DISC1_uc010pxg.1_Silent_p.L215L|DISC1_uc010pxh.1_Silent_p.L215L|DISC1_uc010pxi.1_RNA|DISC1_uc010pxj.1_5'UTR|DISC1_uc010pxk.1_RNA|DISC1_uc010pxl.1_RNA|DISC1_uc010pxm.1_Silent_p.L215L|DISC1_uc010pxn.1_5'UTR|DISC1_uc001hva.2_Silent_p.L215L|DISC1_uc010pwm.1_Silent_p.L215L|DISC1_uc001hux.1_Silent_p.L215L|DISC1_uc001hvc.3_Silent_p.L215L|DISC1_uc010pwn.1_Silent_p.L215L	NM_018662	NP_061132	Q9NRI5	DISC1_HUMAN	disrupted in schizophrenia 1 isoform L	215	Interaction with MAP1A.				microtubule cytoskeleton organization|neuron migration|positive regulation of neuroblast proliferation|positive regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	centrosome|microtubule	protein binding			skin(1)	1		all_cancers(173;0.0208)|Prostate(94;0.0975)				TTATTCGGCTCTCGCTTGGCT	0.607000													20	43					0	0	0	0
KIAA1462	57608	broad.mit.edu	37	10	30317108	30317108	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr10:30317108C>T	uc001iux.2	-	2	2028	c.1969G>A	c.(1969-1971)GAA>AAA	p.E657K	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.E519K|KIAA1462_uc009xle.1_Missense_Mutation_p.E657K	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	657										ovary(4)	4						TGTCTGTCTTCTTCTGGTTCC	0.517000													15	25					0	0	0	0
ZEB1	6935	broad.mit.edu	37	10	31809260	31809260	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr10:31809260G>C	uc001ivs.3	+	7	1060	c.997G>C	c.(997-999)GAG>CAG	p.E333Q	ZEB1_uc001ivr.3_Missense_Mutation_p.E115Q|ZEB1_uc010qee.1_Missense_Mutation_p.E115Q|ZEB1_uc010qef.1_Missense_Mutation_p.E115Q|ZEB1_uc009xlj.1_Missense_Mutation_p.E259Q|ZEB1_uc010qeg.1_Missense_Mutation_p.E192Q|ZEB1_uc009xlk.1_Missense_Mutation_p.E115Q|ZEB1_uc001ivt.3_Missense_Mutation_p.E115Q|ZEB1_uc001ivu.3_Missense_Mutation_p.E334Q|ZEB1_uc001ivv.3_Missense_Mutation_p.E313Q|ZEB1_uc010qeh.1_Missense_Mutation_p.E266Q|ZEB1_uc009xlo.1_Missense_Mutation_p.E316Q|ZEB1_uc009xlp.2_Missense_Mutation_p.E317Q	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	333					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				GCAAAAGATAGAGAATAAACC	0.438000													15	26					0	0	0	0
PLAC9	219348	broad.mit.edu	37	10	81904065	81904065	+	Silent	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr10:81904065G>A	uc001kbp.1	+	3	510	c.249G>A	c.(247-249)CCG>CCA	p.P83P		NM_001012973	NP_001012991	Q5JTB6	PLAC9_HUMAN	placenta-specific 9 precursor	83						extracellular region					0	Prostate(51;0.0095)|all_epithelial(25;0.175)		Colorectal(32;0.109)			ACCTGCCCCCGGGACCCTTCA	0.657000											OREG0020321	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	14					0	0	0	0
C11orf35	256329	broad.mit.edu	37	11	558714	558714	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr11:558714G>A	uc001lpx.2	-	3	274	c.211C>T	c.(211-213)CGA>TGA	p.R71*	uc001lpy.2_RNA|uc001lpz.2_5'Flank|RASSF7_uc001lqa.2_5'Flank|RASSF7_uc001lqb.2_5'Flank|RASSF7_uc001lqc.2_5'Flank|RASSF7_uc001lqd.2_5'Flank	NM_173573	NP_775844	Q8IXW0	CK035_HUMAN	hypothetical protein LOC256329	71										pancreas(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.18e-28)|Epithelial(43;6.93e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.97e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TCCAGTTCTCGCTGTCTCCAC	0.667000													4	10					0	0	0	0
OR52B6	340980	broad.mit.edu	37	11	5602330	5602330	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr11:5602330T>A	uc010qzi.1	+	1	224	c.224T>A	c.(223-225)CTG>CAG	p.L75Q	HBG2_uc001mak.1_Intron	NM_001005162	NP_001005162	Q8NGF0	O52B6_HUMAN	olfactory receptor, family 52, subfamily B,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;3.56e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGGCAATCCTGCATGAGCCC	0.502000													21	76					0	0	0	0
HPX	3263	broad.mit.edu	37	11	6461935	6461935	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr11:6461935C>T	uc001mdg.2	-	2	170	c.109G>A	c.(109-111)GAA>AAA	p.E37K	HPX_uc001mdf.2_5'Flank|HPX_uc009yfc.2_RNA|HPX_uc010rai.1_Missense_Mutation_p.E37K	NM_000613	NP_000604	P02790	HEMO_HUMAN	hemopexin precursor	37	O-glycosylated at one, two and three sites.				cellular iron ion homeostasis|interspecies interaction between organisms	extracellular space	heme transporter activity|metal ion binding|protein binding				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;5.46e-08)|BRCA - Breast invasive adenocarcinoma(625;0.19)		GTCTCGCCTTCAGCAACATTC	0.502000													33	82					0	0	0	0
B3GAT3	26229	broad.mit.edu	37	11	62384595	62384595	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr11:62384595C>T	uc001ntw.2	-	3	511	c.482G>A	c.(481-483)CGG>CAG	p.R161Q	B3GAT3_uc009ynz.2_Missense_Mutation_p.R154Q|B3GAT3_uc001ntx.2_RNA|B3GAT3_uc010rlz.1_Missense_Mutation_p.R161Q	NM_012200	NP_036332	O94766	B3GA3_HUMAN	beta-1,3-glucuronyltransferase 3	161	Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|manganese ion binding				0						GGCCTTGTTCCGCTGCTCGAC	0.662000													20	68					0	0	0	0
PLEKHA5	54477	broad.mit.edu	37	12	19498823	19498823	+	Splice_Site	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr12:19498823G>A	uc001reb.2	+	18	2486	c.2400_splice	c.e18+1	p.E800_splice	PLEKHA5_uc010sie.1_Splice_Site_p.E898_splice|PLEKHA5_uc001rea.2_Splice_Site_p.E858_splice|PLEKHA5_uc009zin.2_Splice_Site_p.E558_splice|PLEKHA5_uc010sif.1_Splice_Site_p.E726_splice|PLEKHA5_uc010sig.1_Splice_Site_p.E719_splice|PLEKHA5_uc010sih.1_Splice_Site_p.E692_splice|PLEKHA5_uc001rec.1_Splice_Site_p.E546_splice|PLEKHA5_uc009zio.2_Intron	NM_019012	NP_061885	Q9HAU0	PKHA5_HUMAN	pleckstrin homology domain containing, family A								1-phosphatidylinositol binding|protein binding			ovary(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.00804)					CAAAAATGAGGTAAGTTTGGA	0.234000													6	23					0	0	0	0
MLL2	8085	broad.mit.edu	37	12	49444054	49444054	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr12:49444054G>A	uc001rta.3	-	11	3317	c.3317C>T	c.(3316-3318)CCC>CTC	p.P1106L		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1106	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGCAGGGCTGGGGGCGGGGCA	0.612000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			12	22					0	0	0	0
C12orf51	283450	broad.mit.edu	37	12	112688011	112688011	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr12:112688011C>T	uc009zwc.2	-	18	2639	c.2621G>A	c.(2620-2622)GGA>GAA	p.G874E	C12orf51_uc010syk.1_Missense_Mutation_p.G696E|C12orf51_uc001tts.2_Missense_Mutation_p.G687E|C12orf51_uc001ttt.3_Missense_Mutation_p.G685E	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						TATCATGATTCCTGGAGGCAG	0.458000													9	30					0	0	0	0
C13orf34	79866	broad.mit.edu	37	13	73320857	73320857	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr13:73320857G>C	uc001viv.1	+	10	1209	c.1090G>C	c.(1090-1092)GAT>CAT	p.D364H	C13orf34_uc010thq.1_Missense_Mutation_p.D139H|C13orf34_uc010aen.1_Missense_Mutation_p.D439H|C13orf34_uc010thr.1_Missense_Mutation_p.D294H|C13orf34_uc001viw.1_Missense_Mutation_p.D313H	NM_024808	NP_079084	Q6PGQ7	BORA_HUMAN	aurora borealis	364					cell division|mitosis|regulation of mitosis|regulation of mitotic spindle organization|regulation of protein localization		protein kinase binding				0		Breast(118;0.0735)		GBM - Glioblastoma multiforme(99;0.000227)		AGATGAGGAAGATAAAGAGAA	0.448000													44	101					0	0	0	0
C13orf34	79866	broad.mit.edu	37	13	73321010	73321010	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr13:73321010G>A	uc001viv.1	+	10	1362	c.1243G>A	c.(1243-1245)GAG>AAG	p.E415K	C13orf34_uc010thq.1_Missense_Mutation_p.E190K|C13orf34_uc010aen.1_Missense_Mutation_p.E490K|C13orf34_uc010thr.1_Missense_Mutation_p.E345K|C13orf34_uc001viw.1_Missense_Mutation_p.E364K	NM_024808	NP_079084	Q6PGQ7	BORA_HUMAN	aurora borealis	415					cell division|mitosis|regulation of mitosis|regulation of mitotic spindle organization|regulation of protein localization		protein kinase binding				0		Breast(118;0.0735)		GBM - Glioblastoma multiforme(99;0.000227)		CAGTGCTTCTGAGAAAGAATT	0.423000													18	59					0	0	0	0
NALCN	259232	broad.mit.edu	37	13	101742207	101742207	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr13:101742207C>T	uc001vox.1	-	29	3569	c.3380G>A	c.(3379-3381)CGT>CAT	p.R1127H		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1127	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CGGCCCCACACGATGAATAAT	0.423000													88	197					0	0	0	0
OR4K13	390433	broad.mit.edu	37	14	20502654	20502654	+	Silent	SNP	T	C	C			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr14:20502654T>C	uc010tkz.1	-	1	264	c.264A>G	c.(262-264)GAA>GAG	p.E88E		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		TGGTCTTACGTTCTCGGAGGA	0.448000													11	34					0	0	0	0
MYH7	4625	broad.mit.edu	37	14	23900628	23900628	+	Silent	SNP	G	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr14:23900628G>T	uc001wjx.2	-	9	901	c.795C>A	c.(793-795)ACC>ACA	p.T265T		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	265	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GGCACTCACAGGTCTCTATGT	0.413000													47	138					1.64573e-32	1.81031e-32	1	0
RPS6KA5	9252	broad.mit.edu	37	14	91372495	91372495	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr14:91372495G>A	uc001xys.2	-	8	1170	c.955C>T	c.(955-957)CAG>TAG	p.Q319*	RPS6KA5_uc010twi.1_Nonsense_Mutation_p.Q240*|RPS6KA5_uc001xyt.2_Nonsense_Mutation_p.Q319*|RPS6KA5_uc010att.1_RNA	NM_004755	NP_004746	O75582	KS6A5_HUMAN	ribosomal protein S6 kinase, polypeptide 5	319	AGC-kinase C-terminal.				axon guidance|epidermal growth factor receptor signaling pathway|histone phosphorylation|innate immune response|interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|nucleoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1		all_cancers(154;0.0148)|Melanoma(154;0.099)|all_epithelial(191;0.146)		Epithelial(152;0.182)|BRCA - Breast invasive adenocarcinoma(234;0.201)		AATTTCACCTGAAAGAAGAGA	0.413000													24	48					0	0	0	0
KIAA0284	283638	broad.mit.edu	37	14	105349504	105349504	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr14:105349504C>T	uc010axb.2	+	8	934	c.710C>T	c.(709-711)TCG>TTG	p.S237L	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Missense_Mutation_p.S167L|KIAA0284_uc001yps.2_Missense_Mutation_p.S143L	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	237						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		CCGCAGCCGTCGCAGCCCCCC	0.711000													4	16					0	0	0	0
AHNAK2	113146	broad.mit.edu	37	14	105415731	105415731	+	Silent	SNP	C	T	T	rs139340205	by1000genomes	TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr14:105415731C>T	uc010axc.1	-	7	6177	c.6057G>A	c.(6055-6057)GAG>GAA	p.E2019E	AHNAK2_uc001ypx.2_Silent_p.E1919E	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2019						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TCACGTCGGCCTCCACCTTGG	0.617000													22	59					0	0	0	0
CXADRP2	646243	broad.mit.edu	37	15	22016259	22016259	+	Missense_Mutation	SNP	T	C	C	rs140087837	by1000genomes	TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr15:22016259T>C	uc010tzk.1	-	1	620	c.458A>G	c.(457-459)GAC>GGC	p.D153G		NR_024387				RecName: Full=Coxsackievirus and adenovirus receptor; AltName: Full=Coxsackievirus B-adenovirus receptor; AltName: Full=HCVADR;          Short=hCAR; AltName: Full=CVB3-binding protein; Flags: Precursor;												0						TTTCTGTGAGTCAGACAATTT	0.363000													3	8					0	0	0	0
ATP10A	57194	broad.mit.edu	37	15	25972326	25972326	+	Silent	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr15:25972326G>A	uc010ayu.2	-	4	934	c.828C>T	c.(826-828)GTC>GTT	p.V276V		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	276	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		TGACAATGCCGACGACTGCGT	0.552000													22	24					0	0	0	0
ITPKA	3706	broad.mit.edu	37	15	41793928	41793928	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr15:41793928C>T	uc001znz.2	+	3	693	c.682C>T	c.(682-684)CGC>TGC	p.R228C		NM_002220	NP_002211	P23677	IP3KA_HUMAN	1D-myo-inositol-trisphosphate 3-kinase A	228					signal transduction		ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity				0		all_cancers(109;1.89e-19)|all_epithelial(112;2.28e-16)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.172)		OV - Ovarian serous cystadenocarcinoma(18;7.63e-17)|GBM - Glioblastoma multiforme(113;1.34e-06)|Colorectal(105;0.0148)|BRCA - Breast invasive adenocarcinoma(123;0.113)		TGACGCGCTGCGCGGCTGCGT	0.682000													6	21					0	0	0	0
Unknown	0	broad.mit.edu	37	15	82620272	82620272	+	RNA	SNP	A	T	T	rs141755317	by1000genomes	TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr15:82620272A>T	uc010bls.1	+	1		c.365A>T								Homo sapiens mRNA for FLJ00317 protein.																		GGGGACTCCCACCTTCCCAAC	0.637000													3	7					0	0	0	0
SGSM2	9905	broad.mit.edu	37	17	2275526	2275526	+	Silent	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr17:2275526C>T	uc002fun.3	+	13	1660	c.1485C>T	c.(1483-1485)ATC>ATT	p.I495I	SGSM2_uc002fum.3_Silent_p.I540I|SGSM2_uc010vqw.1_Silent_p.I495I|SGSM2_uc002fuo.2_Silent_p.I83I	NM_001098509	NP_001091979	O43147	SGSM2_HUMAN	RUN and TBC1 domain containing 1 isoform 2	495						intracellular	Rab GTPase activator activity				0				Colorectal(2;5.15e-05)|READ - Rectum adenocarcinoma(2;0.000115)		AGAGGCAGATCGTGTCCCGGG	0.706000													14	60					0	0	0	0
SGSM2	9905	broad.mit.edu	37	17	2276633	2276633	+	Silent	SNP	A	G	G			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr17:2276633A>G	uc002fun.3	+	16	1966	c.1791A>G	c.(1789-1791)GCA>GCG	p.A597A	SGSM2_uc002fum.3_Silent_p.A642A|SGSM2_uc010vqw.1_Silent_p.A597A|SGSM2_uc002fuo.2_3'UTR|SGSM2_uc002fup.1_5'Flank	NM_001098509	NP_001091979	O43147	SGSM2_HUMAN	RUN and TBC1 domain containing 1 isoform 2	597	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0				Colorectal(2;5.15e-05)|READ - Rectum adenocarcinoma(2;0.000115)		AGGTGGACGCAGTGGTGGCAG	0.662000													12	56					0	0	0	0
MRM1	79922	broad.mit.edu	37	17	34964135	34964135	+	Silent	SNP	C	T	T	rs113915340		TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr17:34964135C>T	uc002hne.2	+	3	881	c.666C>T	c.(664-666)GCC>GCT	p.A222A	MRM1_uc002hnf.2_Silent_p.A27A	NM_024864	NP_079140	Q6IN84	MRM1_HUMAN	mitochondrial rRNA methyltransferase 1 homolog	222					RNA processing	mitochondrion	RNA binding|RNA methyltransferase activity				0		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		GGCTCGTGGCCGGCACGGTGG	0.463000													72	164					0	0	0	0
Unknown	0	broad.mit.edu	37	17	39296254	39296254	+	RNA	SNP	C	T	T	rs72483263	by1000genomes	TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr17:39296254C>T	uc010cxk.1	-	1		c.450G>A								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		ggcagcagcacgggcggcagc	0.323000													4	14					0	0	0	0
STAT3	6774	broad.mit.edu	37	17	40474419	40474419	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr17:40474419T>A	uc002hzl.1	-	21	2222	c.1982A>T	c.(1981-1983)GAT>GTT	p.D661V	STAT3_uc002hzk.1_Missense_Mutation_p.D661V|STAT3_uc002hzm.1_Missense_Mutation_p.D661V|STAT3_uc010wgh.1_Missense_Mutation_p.D563V|STAT3_uc002hzn.1_Missense_Mutation_p.D661V	NM_139276	NP_644805	P40763	STAT3_HUMAN	signal transducer and activator of transcription	661	SH2.				cellular component movement|eating behavior|eye photoreceptor cell differentiation|glucose homeostasis|interleukin-6-mediated signaling pathway|interspecies interaction between organisms|JAK-STAT cascade involved in growth hormone signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein import into nucleus|response to estradiol stimulus|sexual reproduction|temperature homeostasis	cytosol|nucleus|plasma membrane	calcium ion binding|ligand-regulated transcription factor activity|protein dimerization activity|protein kinase binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		all_cancers(22;1.39e-06)|all_epithelial(22;2.95e-05)|Breast(137;0.000135)		BRCA - Breast invasive adenocarcinoma(366;0.139)		ATTGGTAGCATCCATGATCTT	0.483000									Hyperimmunoglobulin_E_Recurrent_Infection_Syndrome				61	143					0	0	0	0
FOXK2	3607	broad.mit.edu	37	17	80540627	80540627	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr17:80540627G>A	uc002kfn.2	+	5	1091	c.920G>A	c.(919-921)CGC>CAC	p.R307H	FOXK2_uc002kfm.1_Missense_Mutation_p.R307H|FOXK2_uc010diu.2_Intron	NM_004514	NP_004505	Q01167	FOXK2_HUMAN	forkhead box K2	307	DNA-binding; major groove.|Fork-head.			R->A: Abolishes DNA-binding.	embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0	Breast(20;0.00106)|all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0371)|BRCA - Breast invasive adenocarcinoma(99;0.0415)			AATTCAATTCGCCACAATCTC	0.393000													9	26					0	0	0	0
CCDC11	220136	broad.mit.edu	37	18	47753897	47753897	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr18:47753897C>T	uc002lee.2	-	8	1490	c.1399G>A	c.(1399-1401)GAA>AAA	p.E467K		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	467	Potential.									ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		CGTTTCTCTTCCTTCTCTGCT	0.488000													35	87					0	0	0	0
CLEC4M	10332	broad.mit.edu	37	19	7830969	7830969	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr19:7830969G>C	uc002mih.2	+	5	709	c.591G>C	c.(589-591)GAG>GAC	p.E197D	CLEC4M_uc010xjv.1_Missense_Mutation_p.E192D|CLEC4M_uc002mhy.2_Missense_Mutation_p.E164D|CLEC4M_uc010xjw.1_Intron|CLEC4M_uc010dvt.2_Missense_Mutation_p.E174D|CLEC4M_uc010dvs.2_Missense_Mutation_p.E196D|CLEC4M_uc010xjx.1_Missense_Mutation_p.E169D|CLEC4M_uc002mhz.2_Intron|CLEC4M_uc002mic.2_Missense_Mutation_p.E192D|CLEC4M_uc002mia.2_Intron	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	220	Extracellular (Probable).|5.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						AGTTGCCAGAGAAATCCAAGC	0.557000													27	116					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9090538	9090538	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr19:9090538C>A	uc002mkp.2	-	1	1481	c.1277G>T	c.(1276-1278)GGA>GTA	p.G426V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	426	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTTTCCTTTCCACTCGTGGA	0.512000													16	44					0.00316338	0.00316338	1	0
ELL	8178	broad.mit.edu	37	19	18576334	18576334	+	Silent	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr19:18576334C>T	uc002njh.2	-	4	429	c.357G>A	c.(355-357)ACG>ACA	p.T119T	ELL_uc010ebq.2_Silent_p.T62T|ELL_uc002njg.2_5'UTR	NM_006532	NP_006523	P55199	ELL_HUMAN	elongation factor RNA polymerase II	119					positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	Cajal body|nuclear speck|transcription elongation factor complex	protein binding			lung(1)	1				GBM - Glioblastoma multiforme(1328;7.81e-07)		TGGCACACACCGTGATCTTGT	0.622000			T	MLL	AL								15	33					0	0	0	0
LOC284441	284441	broad.mit.edu	37	19	20369726	20369726	+	Silent	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr19:20369726G>A	uc002nov.2	+	1	1270	c.519G>A	c.(517-519)GTG>GTA	p.V173V		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						ATAATATTGTGCAAGAGCAGA	0.403000													18	41					0	0	0	0
ZNF208	7757	broad.mit.edu	37	19	22155677	22155677	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr19:22155677G>C	uc002nqp.2	-	5	2008	c.1859C>G	c.(1858-1860)CCC>CGC	p.P620R	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				ACATTTGTAGGGTTTCTCTCC	0.378000													7	24					0	0	0	0
ZNF492	57615	broad.mit.edu	37	19	22847039	22847039	+	Missense_Mutation	SNP	A	C	C			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr19:22847039A>C	uc002nqw.3	+	4	812	c.568A>C	c.(568-570)ATT>CTT	p.I190L		NM_020855	NP_065906	Q9P255	ZN492_HUMAN	zinc finger protein 492	190	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.0266)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00203)|Hepatocellular(1079;0.244)				ACATAAAAGAATTCATACTGG	0.368000													3	8					0	0	0	0
ZNF540	163255	broad.mit.edu	37	19	38103616	38103616	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr19:38103616C>T	uc002ogq.2	+	5	1767	c.1435C>T	c.(1435-1437)CGT>TGT	p.R479C	ZNF540_uc002ogu.2_Missense_Mutation_p.R479C|ZNF540_uc010efq.2_Missense_Mutation_p.R447C	NM_152606	NP_689819	Q8NDQ6	ZN540_HUMAN	zinc finger protein 540	479	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CTTTCGAGTTCGTTCTCAAAT	0.403000													11	40					0	0	0	0
ZNF45	7596	broad.mit.edu	37	19	44426335	44426335	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr19:44426335C>G	uc002oxu.1	-	1	102	c.3G>C	c.(1-3)ATG>ATC	p.M1I	ZNF45_uc002oxw.1_Missense_Mutation_p.M1I|ZNF45_uc002oxv.1_Missense_Mutation_p.M1I	NM_003425	NP_003416	Q02386	ZNF45_HUMAN	zinc finger protein 45	1					multicellular organismal development	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						TAGACTTCGTCATTTTGTCCT	0.403000													10	12					0	0	0	0
ZNF880	400713	broad.mit.edu	37	19	52887427	52887427	+	Missense_Mutation	SNP	A	C	C	rs8104808	by1000genomes	TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr19:52887427A>C	uc002pzc.2	+	4	643	c.594A>C	c.(592-594)AGA>AGC	p.R198S		NM_001145434	NP_001138906	Q6PDB4	ZN880_HUMAN	zinc finger protein LOC400713	198	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						TGTCTTCAAGACTTGCTAACA	0.373000													4	7					0	0	0	0
ZNF702P	79986	broad.mit.edu	37	19	53473621	53473621	+	RNA	SNP	G	C	C			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr19:53473621G>C	uc002qan.3	-	4		c.880C>G				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						ACATTGGAAAGATTTTTCTCT	0.318000													8	25					0	0	0	0
ZNF787	126208	broad.mit.edu	37	19	56599489	56599489	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr19:56599489C>G	uc010eth.1	-	3	1171	c.1052G>C	c.(1051-1053)GGA>GCA	p.G351A		NM_001002836	NP_001002836	Q6DD87	ZN787_HUMAN	zinc finger protein 787	351					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;3.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0559)		GTAGCTCTGTCCGCAGCTGCT	0.741000													10	21					0	0	0	0
ZNF513	130557	broad.mit.edu	37	2	27600843	27600843	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr2:27600843G>A	uc002rkk.2	-	4	1395	c.1195C>T	c.(1195-1197)CAT>TAT	p.H399Y	ZNF513_uc002rkj.2_Missense_Mutation_p.H337Y	NM_144631	NP_653232	Q8N8E2	ZN513_HUMAN	zinc finger protein 513	399	C2H2-type 5.				regulation of transcription, DNA-dependent|response to stimulus|retina development in camera-type eye|transcription, DNA-dependent|visual perception	nucleus	transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTATCCAGATGAGCAGAGGCA	0.587000													56	160					0	0	0	0
DNAH7	56171	broad.mit.edu	37	2	196636519	196636519	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr2:196636519G>C	uc002utj.3	-	61	11399	c.11298C>G	c.(11296-11298)ATC>ATG	p.I3766M	DNAH7_uc002uti.3_Missense_Mutation_p.I249M	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3766					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TGGCAGCCTCGATGTCGAAGT	0.453000													54	148					0	0	0	0
GTF3C3	9330	broad.mit.edu	37	2	197637642	197637642	+	Silent	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr2:197637642G>A	uc002uts.2	-	14	2157	c.2067C>T	c.(2065-2067)ATC>ATT	p.I689I	GTF3C3_uc010zgu.1_Silent_p.I660I	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	689						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						GAAATCACCTGATATAGTTGT	0.323000													10	22					0	0	0	0
GTSE1	51512	broad.mit.edu	37	22	46725995	46725995	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr22:46725995G>T	uc011aqy.1	+	12	2400	c.2188G>T	c.(2188-2190)GAG>TAG	p.E730*	GTSE1_uc011aqz.1_Nonsense_Mutation_p.E577*|GTSE1_uc003bhn.2_RNA|uc011ara.1_5'Flank|uc003bho.3_5'Flank	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	711					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		GGCTGACAAGGAGAACGTGGA	0.532000													19	36					5.35267e-07	5.60756e-07	1	0
CELSR3	1951	broad.mit.edu	37	3	48669776	48669776	+	Missense_Mutation	SNP	G	A	A	rs140373134	by1000genomes	TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr3:48669776G>A	uc003cuf.1	-	41	10702	c.10702C>T	c.(10702-10704)CCG>TCG	p.P3568S	SLC26A6_uc003cug.2_Missense_Mutation_p.P142S|SLC26A6_uc003cuh.2_Missense_Mutation_p.P163S|SLC26A6_uc010hke.2_Missense_Mutation_p.P14S|SLC26A6_uc003cuk.2_Intron|SLC26A6_uc003cui.2_Missense_Mutation_p.P163S|SLC26A6_uc003cuj.2_Missense_Mutation_p.P163S|SLC26A6_uc011bbp.1_Intron	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	Error:Variant_position_missing_in_Q9NYQ7_after_alignment					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		AAGGCCTGCGGGGCCAGGGAT	0.597000													8	30					0	0	0	0
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr3:178936091G>A	uc003fjk.2	+	10	1790	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	545	PI3K helical.		E -> G (in KERSEB).|E -> A (in cancer).|E -> K (in KERSEB; shows an increase in lipid kinase activity; oncogenic in vivo; occurs in the interface between the PI3K helical domain and the nSH2 (N-terminal SH2) region of the p85 regulatory subunit and may reduce the inhibitory effect of p85; requires interaction with RAS to induce cellular transformation; enhances invadopodia-mediated extracellular matrix degradation and invasion in breast cancer cells).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E545K(735)|p.E545A(75)|p.E545G(55)|p.E545?(19)|p.E545D(15)|p.E545Q(12)|p.E545V(4)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TGAAATCACTGAGCAGGAGAA	0.353000	E545K(RERFLCSQ1_LUNG)|E545K(KYSE510_OESOPHAGUS)|E545K(NCIH508_LARGE_INTESTINE)|E545K(HCC202_BREAST)|E545K(BFTC909_KIDNEY)|E545K(HCT15_LARGE_INTESTINE)|E545K(NCIH596_LUNG)|E545K(L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|E545K(DLD1_LARGE_INTESTINE)|E545K(ESS1_ENDOMETRIUM)|E545K(MDAMB361_BREAST)|E545K(MKN1_STOMACH)|E545K(MCF7_BREAST)|E545K(NCIH460_LUNG)|E545K(TCCSUP_URINARY_TRACT)|E545K(HSC4_UPPER_AERODIGESTIVE_TRACT)|E545K(BC3C_URINARY_TRACT)|E545K(HUH28_BILIARY_TRACT)|E545K(HT1197_URINARY_TRACT)|E545K(TE5_OESOPHAGUS)	57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			12	24					0	0	0	0
DLG1	1739	broad.mit.edu	37	3	197009663	197009663	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr3:197009663G>T	uc003fxo.3	-	4	395	c.205C>A	c.(205-207)CGT>AGT	p.R69S	DLG1_uc011bud.1_5'UTR|DLG1_uc003fxn.3_Missense_Mutation_p.R69S|DLG1_uc011bue.1_Missense_Mutation_p.R69S|DLG1_uc010ial.2_Missense_Mutation_p.R69S|DLG1_uc011buf.1_RNA|DLG1_uc003fxp.2_RNA|DLG1_uc010iam.1_Missense_Mutation_p.R69S	NM_001098424	NP_001091894	Q12959	DLG1_HUMAN	discs, large homolog 1 isoform 1	69					actin filament organization|axon guidance|cell-cell adhesion|cortical actin cytoskeleton organization|endothelial cell proliferation|establishment or maintenance of cell polarity|interspecies interaction between organisms|mitotic cell cycle G1/S transition checkpoint|negative regulation of mitotic cell cycle|protein localization in plasma membrane|synaptic transmission|tight junction assembly	basolateral plasma membrane|cytosol|endoplasmic reticulum membrane|immunological synapse|MPP7-DLG1-LIN7 complex|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|tight junction	cytoskeletal protein binding|guanylate kinase activity|L27 domain binding|phosphatase binding|phosphoprotein phosphatase activity|potassium channel regulator activity|protein binding|protein C-terminus binding|protein kinase binding			ovary(3)	3	all_cancers(143;6.22e-10)|Ovarian(172;0.0418)|Breast(254;0.0589)	Lung NSC(153;0.133)	Epithelial(36;3.23e-24)|all cancers(36;2.15e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.0148)		GGCTTTGAACGATCTATACAT	0.358000													46	103					5.57489e-27	6.05667e-27	1	0
PCDHGB1	56104	broad.mit.edu	37	5	140731511	140731511	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr5:140731511G>A	uc003ljo.1	+	1	1684	c.1684G>A	c.(1684-1686)GCG>ACG	p.A562T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.A562T	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	562	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTGTACCCCGCGCTGGGGCC	0.697000													29	60					0	0	0	0
BTN2A2	10385	broad.mit.edu	37	6	26392980	26392980	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr6:26392980G>A	uc003nhq.2	+	8	1443	c.1357G>A	c.(1357-1359)GAA>AAA	p.E453K	BTN2A2_uc011dkg.1_3'UTR|BTN2A2_uc003nhr.2_Missense_Mutation_p.E337K|BTN2A2_uc011dkh.1_Missense_Mutation_p.E243K|BTN2A2_uc003nhs.2_Intron|BTN2A2_uc003nht.2_Missense_Mutation_p.E453K|BTN2A2_uc011dki.1_3'UTR	NM_006995	NP_008926	Q8WVV5	BT2A2_HUMAN	butyrophilin, subfamily 2, member A2 isoform a	453	B30.2/SPRY.|Cytoplasmic (Potential).				negative regulation of activated T cell proliferation|negative regulation of cellular metabolic process|negative regulation of cytokine secretion	integral to membrane					0						CCTGGACTATGAAGCTGGAGA	0.542000													17	43					0	0	0	0
FOXO3	2309	broad.mit.edu	37	6	108882906	108882906	+	Silent	SNP	G	A	A	rs149906214		TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr6:108882906G>A	uc003psk.2	+	2	811	c.495G>A	c.(493-495)CTG>CTA	p.L165L	FOXO3_uc003psn.2_Silent_p.L165L|FOXO3_uc003psm.2_Silent_p.L165L	NM_201559	NP_963853	O43524	FOXO3_HUMAN	forkhead box O3A	165	Fork-head.				antral ovarian follicle growth|apoptosis|embryo development|glucose homeostasis|induction of apoptosis|initiation of primordial ovarian follicle growth|insulin receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|oocyte maturation|ovulation from ovarian follicle|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of erythrocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			central_nervous_system(4)|lung(2)	6		all_cancers(87;1.78e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;3.88e-05)|Colorectal(196;0.0294)|all_lung(197;0.0487)|Lung SC(18;0.152)		Epithelial(106;0.000759)|all cancers(137;0.00121)|BRCA - Breast invasive adenocarcinoma(108;0.00163)|OV - Ovarian serous cystadenocarcinoma(136;0.00718)		ACGCGGACCTGATCACCCGCG	0.672000													6	18					0	0	0	0
EYA4	2070	broad.mit.edu	37	6	133802648	133802648	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr6:133802648G>A	uc003qec.3	+	12	1476	c.1018G>A	c.(1018-1020)GAT>AAT	p.D340N	EYA4_uc011ecq.1_Missense_Mutation_p.D286N|EYA4_uc011ecr.1_Missense_Mutation_p.D292N|EYA4_uc003qed.3_Missense_Mutation_p.D340N|EYA4_uc003qee.3_Missense_Mutation_p.D317N|EYA4_uc011ecs.1_Missense_Mutation_p.D346N|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	340					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		CAAAGATCTTGATGAGAGAAC	0.458000													46	111					0	0	0	0
GPR146	115330	broad.mit.edu	37	7	1097172	1097172	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr7:1097172C>G	uc003sjw.2	+	2	97	c.21C>G	c.(19-21)TTC>TTG	p.F7L	C7orf50_uc003sju.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron|GPR146_uc003sjx.3_Missense_Mutation_p.F7L|GPR146_uc003sjy.1_Missense_Mutation_p.F7L	NM_138445	NP_612454	Q96CH1	GP146_HUMAN	G protein-coupled receptor 146	7	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Ovarian(82;0.0779)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;1.74e-15)		GCAGCTGGTTCAACGGCACAG	0.687000													10	17					0	0	0	0
NOS3	4846	broad.mit.edu	37	7	150706129	150706129	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr7:150706129G>A	uc003wif.2	+	18	2520	c.2224G>A	c.(2224-2226)GAG>AAG	p.E742K	NOS3_uc011kuy.1_Missense_Mutation_p.E536K	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	742					anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	CGCCCAGGCCGAGGGCCTGCA	0.682000											OREG0018442	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	13					0	0	0	0
RP1	6101	broad.mit.edu	37	8	55537326	55537326	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr8:55537326T>C	uc003xsd.1	+	4	1032	c.884T>C	c.(883-885)GTT>GCT	p.V295A	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	295					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TATTCTTTTGTTCCTGAAAAG	0.308000													18	26					0	0	0	0
FAM135B	51059	broad.mit.edu	37	8	139164197	139164197	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr8:139164197C>T	uc003yuy.2	-	13	2692	c.2521G>A	c.(2521-2523)GGC>AGC	p.G841S	FAM135B_uc003yux.2_Missense_Mutation_p.G742S|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.G403S|FAM135B_uc003yvb.2_Missense_Mutation_p.G403S	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	841										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TATCCGGGGCCCTGCTGGTTG	0.517000										HNSCC(54;0.14)			17	48					0	0	0	0
RANBP6	26953	broad.mit.edu	37	9	6015424	6015424	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr9:6015424C>T	uc003zjr.2	-	1	195	c.184G>A	c.(184-186)GCA>ACA	p.A62T	RANBP6_uc011lmf.1_Missense_Mutation_p.A62T|RANBP6_uc003zjs.2_Intron	NM_012416	NP_036548	O60518	RNBP6_HUMAN	RAN binding protein 6	62					protein transport	cytoplasm|nucleus	binding			ovary(3)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00522)|Lung(218;0.101)		TCATAACCTGCTCTTCTATTT	0.483000													35	70					0	0	0	0
MCART1	92014	broad.mit.edu	37	9	37887677	37887677	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr9:37887677C>G	uc004aau.2	-	3	1615	c.871G>C	c.(871-873)GAG>CAG	p.E291Q	MCART1_uc004aar.1_Intron|MCART1_uc004aaq.1_Intron|uc004aat.1_5'Flank|MCART1_uc004aav.2_Missense_Mutation_p.E291Q	NM_033412	NP_219480	Q9H1U9	MCAR1_HUMAN	mitochondrial carrier triple repeat 1	291	Solcar 3.				transport	integral to membrane|mitochondrial inner membrane				ovary(2)|breast(1)	3				GBM - Glioblastoma multiforme(29;0.00559)|Lung(182;0.0422)		AACAAGAACTCATAAGTTGCA	0.383000													20	52					0	0	0	0
NANS	54187	broad.mit.edu	37	9	100819144	100819144	+	Silent	SNP	G	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr9:100819144G>T	uc004ayb.2	+	2	696	c.54G>T	c.(52-54)CCG>CCT	p.P18P	NANS_uc004ayc.2_Silent_p.P18P	NM_018946	NP_061819	Q9NR45	SIAS_HUMAN	N-acetylneuraminic acid phosphate synthase	18					lipopolysaccharide biosynthetic process	cytoplasm	N-acetylneuraminate synthase activity|N-acylneuraminate cytidylyltransferase activity|N-acylneuraminate-9-phosphate synthase activity			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				GGCAACACCCGTGCTTCATCA	0.647000													9	32					0.000673444	0.000681185	1	0
PPP2R4	5524	broad.mit.edu	37	9	131873256	131873256	+	5'Flank	SNP	A	C	C	rs3118625	by1000genomes	TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr9:131873256A>C	uc004bxm.1	+						CRAT_uc004bxg.2_5'Flank|CRAT_uc004bxk.3_5'Flank|CRAT_uc004bxh.2_5'Flank|CRAT_uc004bxj.2_5'Flank|PPP2R4_uc004bxl.1_5'UTR|PPP2R4_uc011mbo.1_5'Flank|PPP2R4_uc010myr.1_5'Flank|PPP2R4_uc004bxn.1_5'Flank|PPP2R4_uc004bxo.1_5'Flank|PPP2R4_uc011mbp.1_5'Flank|PPP2R4_uc011mbq.1_5'Flank|PPP2R4_uc010mys.1_5'Flank	NM_178001	NP_821068	Q15257	PTPA_HUMAN	protein phosphatase 2A, regulatory subunit B'						ATP catabolic process|negative regulation of phosphoprotein phosphatase activity|negative regulation of protein dephosphorylation|positive regulation of apoptosis|positive regulation of phosphoprotein phosphatase activity|positive regulation of protein dephosphorylation	calcium channel complex|cytoplasm|nucleus|protein phosphatase type 2A complex|soluble fraction	ATP binding|peptidyl-prolyl cis-trans isomerase activity|protein heterodimerization activity|protein homodimerization activity|protein phosphatase 2A binding|protein phosphatase type 2A regulator activity|protein tyrosine phosphatase activator activity|receptor binding			ovary(1)|lung(1)|pancreas(1)	3		Medulloblastoma(224;0.235)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)		AGGAAGGAGGAGGTCACCGTC	0.642000											OREG0003932	type=REGULATORY REGION|Gene=CRAT|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	15	67					0	0	0	0
DCAF8L2	347442	broad.mit.edu	37	X	27766045	27766045	+	Missense_Mutation	SNP	A	G	G	rs5926895	by1000genomes	TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chrX:27766045A>G	uc011mjy.1	+	1	1120	c.1033A>G	c.(1033-1035)ACC>GCC	p.T345A		NM_001136533	NP_001130005			DDB1 and CUL4 associated factor 8-like 2											central_nervous_system(1)|pancreas(1)	2						TGTTGTCTTCACCATTGACCT	0.478000													4	8					0	0	0	0
SLC7A3	84889	broad.mit.edu	37	X	70145695	70145695	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chrX:70145695C>A	uc004dyn.2	-	12	1986	c.1828G>T	c.(1828-1830)GAT>TAT	p.D610Y	SLC7A3_uc004dyo.2_Missense_Mutation_p.D610Y	NM_032803	NP_116192	Q8WY07	CTR3_HUMAN	solute carrier family 7 (cationic amino acid	610	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to membrane|plasma membrane				ovary(1)|kidney(1)	2	Renal(35;0.156)				L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	GTGCCGGGATCAAGGTCTACA	0.498000													19	24					1.9806e-07	2.09991e-07	1	0
PCDH11Y	83259	broad.mit.edu	37	Y	4924992	4924992	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chrY:4924992C>T	uc004fqo.2	+	1	862	c.128C>T	c.(127-129)GCG>GTG	p.A43V	PCDH11Y_uc010nwg.1_Missense_Mutation_p.A32V|PCDH11Y_uc004fql.1_Missense_Mutation_p.A32V|PCDH11Y_uc004fqm.1_Missense_Mutation_p.A32V|PCDH11Y_uc004fqn.1_Missense_Mutation_p.A43V	NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	43	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						TACATTTTCGCGGTCCTGCTA	0.473000													9	8					0	0	0	0
S100A7A	338324	broad.mit.edu	37	1	153390616	153390617	+	Frame_Shift_Ins	INS	-	A	A	rs138663810	byFrequency	TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr1:153390616_153390617insA	uc001fbt.1	+	2	115_116	c.58_59insA	c.(58-60)TACfs	p.Y20fs		NM_176823	NP_789793	Q86SG5	S1A7A_HUMAN	S100 calcium binding protein A7-like 1	20	EF-hand 1.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTTTCACAAATACACCGGACGT	0.450													---	---	---							
FCRL5	83416	broad.mit.edu	37	1	157509156	157509157	+	Splice_Site	INS	-	GA	GA			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr1:157509156_157509157insGA	uc001fqu.2	-	7	1282	c.1124_splice	c.e7-1	p.V375_splice	FCRL5_uc009wsm.2_Splice_Site_p.V375_splice|FCRL5_uc010phv.1_Splice_Site_p.V375_splice|FCRL5_uc010phw.1_Splice_Site_p.V290_splice|FCRL5_uc001fqv.1_Splice_Site_p.V375_splice|FCRL5_uc010phx.1_Splice_Site_p.V126_splice	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5							integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ACACGGGAACTGAGAGAGAGAA	0.366													---	---	---							
LOC642587	642587	broad.mit.edu	37	1	209605573	209605574	+	Frame_Shift_Ins	INS	-	GC	GC			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr1:209605573_209605574insGC	uc009xcn.2	+	4	571_572	c.188_189insGC	c.(187-189)AGGfs	p.R63fs	LOC642587_uc010psk.1_RNA|MIR205_hsa-mir-205|MI0000285_RNA	NM_001104548	NP_001098018			hypothetical protein LOC642587												0				OV - Ovarian serous cystadenocarcinoma(81;0.0422)		AAGTTCAGGAGGCATGGAGCTG	0.292													---	---	---							
Unknown	0	broad.mit.edu	37	10	42400455	42400455	+	IGR	DEL	T	-	-	rs71264011		TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr10:42400455delT								None (None upstream) : LOC441666 (426860 downstream)																							cttctttgtgttgtgtgtatt	0.000													---	---	---							
LOH12CR1	118426	broad.mit.edu	37	12	12618499	12618500	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr12:12618499_12618500delCT	uc001ral.2	+	4	746_747	c.380_381delCT	c.(379-381)ACTfs	p.T127fs	LOH12CR1_uc009zhu.2_Frame_Shift_Del_p.T79fs	NM_058169	NP_477517	Q969J3	L12R1_HUMAN	LOH1CR12	127										ovary(1)	1		Prostate(47;0.0802)		BRCA - Breast invasive adenocarcinoma(232;0.0205)		TCTGTAGAAACTCTGTTCAGCT	0.515													---	---	---							
Unknown	0	broad.mit.edu	37	17	19091400	19091401	+	IGR	INS	-	T	T			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr17:19091400_19091401insT								GRAPL (29252 upstream) : EPN2 (49289 downstream)																							tagagcaccgaaaaccacgagg	0.084													---	---	---							
FUT1	2523	broad.mit.edu	37	19	49253657	49253658	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr19:49253657_49253658delAA	uc002pkk.2	-	4	1856_1857	c.881_882delTT	c.(880-882)TTTfs	p.F294fs		NM_000148	NP_000139	P19526	FUT1_HUMAN	fucosyltransferase 1	294	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to plasma membrane|membrane fraction	galactoside 2-alpha-L-fucosyltransferase activity			ovary(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000135)|all cancers(93;0.000354)|Epithelial(262;0.0191)|GBM - Glioblastoma multiforme(486;0.0222)		TGAGCAGGGCAAAGTCTTTCCA	0.564													---	---	---							
MMRN1	22915	broad.mit.edu	37	4	90844391	90844393	+	In_Frame_Del	DEL	AGC	-	-			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr4:90844391_90844393delAGC	uc003hst.2	+	4	994_996	c.923_925delAGC	c.(922-927)GAGCAG>GAG	p.Q313del	MMRN1_uc010iku.2_In_Frame_Del_p.Q279del|MMRN1_uc011cds.1_In_Frame_Del_p.Q55del	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	313	Poly-Gln.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		GGAGTAGCTGAGCAGCAGCAGCA	0.448													---	---	---							
Unknown	0	broad.mit.edu	37	8	66777916	66777916	+	IGR	DEL	C	-	-			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr8:66777916delC								PDE7A (24161 upstream) : DNAJC5B (155875 downstream)																							ctgtgggtggcccccacaagg	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	9	138571635	138571636	+	IGR	INS	-	C	C			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chr9:138571635_138571636insC								LCN9 (13880 upstream) : SOHLH1 (13621 downstream)																							CACTATCCCCTCCCCTCCCCAC	0.584													---	---	---							
Unknown	0	broad.mit.edu	37	X	3442803	3442805	+	IGR	DEL	CAT	-	-			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chrX:3442803_3442805delCAT								MXRA5 (178119 upstream) : PRKX (79608 downstream)																							ccaccaccaccatcaccatcacc	0.000													---	---	---							
NXF4	55999	broad.mit.edu	37	X	101804818	101804818	+	5'Flank	DEL	C	-	-	rs112443744		TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chrX:101804818delC	uc004ejf.1	+							NR_002216				Homo sapiens cDNA FLJ42710 fis, clone BRAMY3007609, moderately similar to Homo sapiens nuclear RNA export factor 2 (NXF2).												0						TGTGGCAGCACCCCCCCCCCA	0.537													---	---	---							
Unknown	0	broad.mit.edu	37	Y	13483364	13483364	+	IGR	DEL	T	-	-			TCGA-BB-7866-01A-11D-2229-08	TCGA-BB-7866-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d6ae619-b33e-453c-aa6d-dda14cd5a337	2a133813-bed7-462f-a34b-4462f5b40b81	g.chrY:13483364delT								None (None upstream) : None (None downstream)																							tctgtcacaattcccctttag	0.000													---	---	---							
