Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AAAS	8086	genome.wustl.edu	37	12	53714438	53714438	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	12	53714438	53714438	G	A	SNP	AAAS	NM_015665.5	human	genbank	58_37c	-1	reviewed	silent	c.162	p.P54	0.915	NULL	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
C9orf43	257169	genome.wustl.edu	37	9	116186580	116186580	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	9	116186580	116186580	A	G	SNP	C9orf43	NM_152786.1	human	genbank	58_37c	+1	predicted	missense	c.791	p.H264R	0.870	NULL	NULL	-	no_errors
CFB	629	genome.wustl.edu	37	6	31914024	31914024	+	Missense_Mutation	SNP	T	A	A	rs4151667	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	6	31914024	31914024	T	A	SNP	CFB	NM_001710.5	human	genbank	58_37c	+1	reviewed	missense	c.26	p.L9H	0.989	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Trypsin,HMMSmart_SM00020,HMMPfam_VWA,HMMSmart_SM00327,superfamily_Trypsin-like serine proteases,superfamily_Complement control module/SCR domain,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,superfamily_vWA-like	-	no_errors
ENSG00000188403	0	genome.wustl.edu	37	15	20170042	20170042	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	15	20170042	20170042	G	A	SNP	VSIG7	ENST00000338912	human	ensembl	58_37c	-1	known	missense	c.230	p.T77I	0.114	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
ENSG00000246457	0	genome.wustl.edu	37	7	134870856	134870856	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	7	134870856	134870856	C	T	SNP	WDR91	ENST00000466182	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-134870856	NULL	0.000	-	-	-	no_coding_region
GNL2	29889	genome.wustl.edu	37	1	38034775	38034775	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	1	38034775	38034775	G	C	SNP	GNL2	NM_013285.2	human	genbank	58_37c	-1	validated	missense	c.1545	p.H515Q	0.000	NULL	HMMPfam_MMR_HSR1,HMMPfam_NGP1NT,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
HCN1	348980	genome.wustl.edu	37	5	45396610	45396610	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	5	45396610	45396610	C	T	SNP	HCN1	NM_021072.2	human	genbank	58_37c	-1	validated	missense	c.1214	p.R405Q	1.000	superfamily_cNMP_binding,superfamily_SSF81324	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Ion_trans_N,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324	-	no_errors
KCNT2	343450	genome.wustl.edu	37	1	196300389	196300389	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	1	196300389	196300389	T	C	SNP	KCNT2	NM_198503.2	human	genbank	58_37c	-1	validated	missense	c.2000	p.Y667C	1.000	NULL	HMMPfam_BK_channel_a,HMMPfam_Ion_trans_2,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Voltage-gated potassium channels	-	no_errors
KIAA1704	55425	genome.wustl.edu	37	13	45580344	45580344	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	13	45580344	45580344	A	G	SNP	KIAA1704	NM_018559.2	human	genbank	58_37c	+1	predicted	missense	c.229	p.R77G	0.982	NULL	NULL	-	no_errors
LCTL	197021	genome.wustl.edu	37	15	66853388	66853388	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	15	66853388	66853388	G	C	SNP	LCTL	NM_207338.2	human	genbank	58_37c	-1	validated	missense	c.661	p.L221V	1.000	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_1,PatternScan_GLYCOSYL_HYDROL_F1_2	-	no_errors
LOC100289598	0	genome.wustl.edu	37	3	85008572	85008572	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	3	85008572	85008572	G	T	SNP	LOC100289598	XM_002342364.1	human	genbank	58_37c	+1	model	missense	c.469	p.V157L	1.000	NULL	NULL	-	no_errors
MAN2B2	23324	genome.wustl.edu	37	4	6610855	6610855	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	4	6610855	6610855	C	T	SNP	MAN2B2	ENST00000505907	human	ensembl	58_37c	+1	known	missense	c.1832	p.A611V	0.001	superfamily_Galactose mutarotase-like,HMMPfam_Glyco_hydro_38C	HMMPfam_Glyco_hydro_38,superfamily_Galactose mutarotase-like,superfamily_Glycoside hydrolase/deacetylase,HMMPfam_Glyco_hydro_38C,HMMPfam_Alpha-mann_mid,superfamily_Families 57/38 glycoside transferase middle domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
MRPL2	51069	genome.wustl.edu	37	6	43022206	43022206	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	6	43022206	43022206	C	A	SNP	MRPL2	NM_015950.3	human	genbank	58_37c	-1	reviewed	missense	c.724	p.A242S	1.000	HMMPfam_Ribosomal_L2_C,superfamily_Transl_SH3_like	HMMPfam_Ribosomal_L2,HMMPfam_Ribosomal_L2_C,superfamily_Transl_SH3_like,superfamily_Nucleic_acid_OB	-	no_errors
MUC4	4585	genome.wustl.edu	37	3	195508115	195508115	+	Missense_Mutation	SNP	T	T	G	rs77145082	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	3	195508115	195508115	T	G	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.9952	p.T3318P	0.077	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
REXO1L1	254958	genome.wustl.edu	37	8	86573790	86573790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	8	86573790	86573790	C	T	SNP	REXO1L1	NM_172239.4	human	genbank	58_37c	-1	validated	missense	c.1937	p.C646Y	0.011	HMMSmart_EXOIII,superfamily_RNaseH_fold,HMMPfam_Exonuc_X-T	HMMSmart_EXOIII,superfamily_RNaseH_fold,HMMPfam_Exonuc_X-T	-	no_errors
RTN4	57142	genome.wustl.edu	37	2	55252287	55252287	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	2	55252287	55252287	G	T	SNP	RTN4	NM_020532.4	human	genbank	58_37c	-1	reviewed	missense	c.2948	p.S983Y	0.989	NULL	HMMPfam_Reticulon	-	no_errors
RYR2	6262	genome.wustl.edu	37	1	237955580	237955580	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	1	237955580	237955580	C	T	SNP	RYR2	NM_001035.2	human	genbank	58_37c	+1	reviewed	missense	c.13739	p.T4580M	1.000	HMMPfam_RR_TM4-6	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SHANK2	22941	genome.wustl.edu	37	11	70332515	70332515	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	11	70332515	70332515	T	C	SNP	SHANK2	NM_012309.3	human	genbank	58_37c	-1	reviewed	missense	c.2098	p.K700E	1.000	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology	-	no_errors
SORCS1	114815	genome.wustl.edu	37	10	108337210	108337210	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	10	108337210	108337210	G	A	SNP	SORCS1	NM_052918.3	human	genbank	58_37c	-1	reviewed	missense	c.3475	p.R1159W	1.000	NULL	HMMPfam_PKD,superfamily_PKD domain,HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase	-	no_errors
TRIM64B	0	genome.wustl.edu	37	11	89609144	89609144	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	11	89609144	89609144	A	C	SNP	TRIM64B	ENST00000329862	human	ensembl	58_37c	-1	known	missense	c.42	p.I14M	0.100	superfamily_SSF57850	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
UBC	7316	genome.wustl.edu	37	12	125397989	125398001	+	Frame_Shift_Del	DEL	TCCTTGTCCTGGA	TCCTTGTCCTGGA	-	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	TCCTTGTCCTGGA	TCCTTGTCCTGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	12	125397989	125398001	TCCTTGTCCTGGA	-	DEL	UBC	NM_021009.4	human	genbank	58_37c	-1	validated	frame_shift_del	c.329_317	p.I106fs	1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.993:1.000:1.000:1.000:1.000	HMMPfam_ubiquitin,HMMSmart_SM00213,PatternScan_UBIQUITIN_1,superfamily_Ubiquitin-like	HMMPfam_ubiquitin,HMMSmart_SM00213,PatternScan_UBIQUITIN_1,superfamily_Ubiquitin-like	-	no_errors
UBR5	51366	genome.wustl.edu	37	8	103298799	103298799	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	8	103298799	103298799	C	A	SNP	UBR5	NM_015902.4	human	genbank	58_37c	-1	reviewed	silent	c.5004	p.S1668	0.976	NULL	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_PABP,HMMSmart_PolyA,superfamily_PABP_HYD,HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1	-	no_errors
